Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p58710 Brassica napus
Aa31LG8G17650 Aethionema arabicum
Aa31LG9G15650 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3187 Anthoceros agrestis
Actinidia09897 Actinidia chinensis
Actinidia30484 Actinidia chinensis
Actinidia39300 Actinidia chinensis
Actinidia39674 Actinidia chinensis
Ah.07g207250 Amaranthus hybridus
Ah.07g207260 Amaranthus hybridus
Ah.13g068530 Amaranthus hybridus
AL3G54000 Arabidopsis lyrata
AL3G54010 Arabidopsis lyrata
Aqoxy1G02707 Aquilegia oxysepala
Aqoxy1G02709 Aquilegia oxysepala
Aqoxy6G02660 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GKFN23 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K8K0CL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PKX56S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QE9TIU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VI4L3R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y4L4RH Arachis hypogaea
AT2G20830 Arabidopsis thaliana
ATR0693G323 Amborella trichopoda
ATR1001G005 Amborella trichopoda
Atru.chr6.3052 Acer truncatum
Atru.chr6.3053 Acer truncatum
Atru.chr6.3054 Acer truncatum
AUR62003378 Chenopodium quinoa
AUR62019019 Chenopodium quinoa
AUR62025926 Chenopodium quinoa
AUR62029450 Chenopodium quinoa
AUR62029451 Chenopodium quinoa
AUR62029630 Chenopodium quinoa
BcaB08g34941 Brassica carinata
BcaC07g41194 Brassica carinata
BolC7t40460H Brassica oleracea
BolC8t51763H Brassica oleracea
BraA09t41257Z Brassica rapa
C08p42010 Brassica napus
CAN.G1310.15 Capsicum annuum
CAN.G1720.5 Capsicum annuum
CAN.G248.61 Capsicum annuum
CAN.G996.2 Capsicum annuum
CAN.G996.3 Capsicum annuum
CANSAT21G1059 Cannabis sativa
CANSAT64G2152 Cannabis sativa
CANSAT78G0375 Cannabis sativa
CARHR053830 Cardamine hirsuta
CARHR111540 Cardamine hirsuta
Carub.0003s3546 Capsella rubella
Ca_01532_v3 Cicer arietinum L.
Ca_01533_v3 Cicer arietinum L.
Ca_20693_v3 Cicer arietinum L.
Ca_30106_v3 Cicer arietinum L.
CBR_g20108 Chara braunii
Cc05_g06470 Coffea canephora
Cc05_g06480 Coffea canephora
Cc11_g01770 Coffea canephora
Cc11_g01780 Coffea canephora
CDE01G0485 Ceratophyllum demersum
CDE05G0969 Ceratophyllum demersum
CDE12G0465 Ceratophyllum demersum
Cfa003704 Carpinus fangiana
Cfa012397 Carpinus fangiana
Cfa014552 Carpinus fangiana
Ciclev10001997m.g Citrus clementina
Ciclev10015950m.g Citrus clementina
Ciclev10017445m.g Citrus clementina
CiPaw.03G170700 Carya illinoinensis
CiPaw.04G123100 Carya illinoinensis
CiPaw.04G123200 Carya illinoinensis
CiPaw.16G086600 Carya illinoinensis
ClCG02G017400 Citrullus lanatus
COL.COLO4_13690 Corchorus olitorius
COL.COLO4_13691 Corchorus olitorius
COL.COLO4_13692 Corchorus olitorius
Cpa.g.sc17.168 Carica papaya
Cre02.g075550 Chlamydomonas reinhardtii
Cre06.g267000 Chlamydomonas reinhardtii
CsaV3_6G012510 Cucumis sativus L.
CsaV3_6G012530 Cucumis sativus L.
CSS0015749 Camellia sinensis var. sinensis
CSS0025708 Camellia sinensis var. sinensis
CSS0039076 Camellia sinensis var. sinensis
CSS0050003 Camellia sinensis var. sinensis
DCAR_009732 Daucus carota
DCAR_011200 Daucus carota
DCAR_012986 Daucus carota
Dinv15475 Davidia involucrata
Dinv15476 Davidia involucrata
Dinv23698 Davidia involucrata
Dinv23699 Davidia involucrata
Dinv23700 Davidia involucrata
Duzib132G0995 Durio zibethinus
Duzib248G0251 Durio zibethinus
Duzib248G0568 Durio zibethinus
ECA233G3782 Erigeron canadensis
ECA236G1367 Erigeron canadensis
EL10Ac3g05654 Beta vulgaris
EL10Ac8g18888 Beta vulgaris
Eucgr.A01786 Eucalyptus grandis
Eucgr.K00932 Eucalyptus grandis
Eucgr.K00933 Eucalyptus grandis
Eucgr.K00935 Eucalyptus grandis
Eucgr.K00936 Eucalyptus grandis
FAN02G3777 Fragaria x ananassa
FAN02G4205 Fragaria x ananassa
FAN05G0495 Fragaria x ananassa
FAN09G0082 Fragaria x ananassa
FAN09G2888 Fragaria x ananassa
FAN14G0313 Fragaria x ananassa
FAN14G0686 Fragaria x ananassa
FAN14G2141 Fragaria x ananassa
FAN14G2345 Fragaria x ananassa
FAN14G3823 Fragaria x ananassa
FAN14G4464 Fragaria x ananassa
FvH4_6g44860 Fragaria vesca
FvH4_6g44870 Fragaria vesca
Glyma.01G070400 Glycine max
Glyma.02G127600 Glycine max
Glyma.09G257600 Glycine max
Glyma.12G201700 Glycine max
Glyma.13G300500 Glycine max
Glyma.18G235000 Glycine max
Gohir.A03G159500 Gossypium hirsutum
Gohir.A03G159600 Gossypium hirsutum
Gohir.D02G182500 Gossypium hirsutum
Gohir.D02G182600 Gossypium hirsutum
Gohir.D02G182700 Gossypium hirsutum
Gorai.005G205100 Gossypium raimondii
GSVIVG01030573001 Vitis vinifera
GSVIVG01030574001 Vitis vinifera
GSVIVG01030575001 Vitis vinifera
HanXRQChr06g0167021 Helianthus annuus
HanXRQChr09g0274351 Helianthus annuus
HanXRQChr11g0350221 Helianthus annuus
HanXRQChr17g0533531 Helianthus annuus
HanXRQChr17g0533551 Helianthus annuus
HanXRQChr17g0533561 Helianthus annuus
Haze_13099 Corylus avellana
Haze_13100 Corylus avellana
Haze_15783 Corylus avellana
Hma1.2p1_0213F.1_g090530 Hydrangea macrophylla
Hma1.2p1_0213F.1_g090570 Hydrangea macrophylla
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla
Hma1.2p1_0565F.1_g179360 Hydrangea macrophylla
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla
HPP92_010084 Vanilla planifolia
HPP92_010093 Vanilla planifolia
HPP92_022510 Vanilla planifolia
Hund15989 Selenicereus undatus
Lalb_Chr19g0135421 Lupinus albus
Lalb_Chr22g0356381 Lupinus albus
Lalb_Chr22g0356391 Lupinus albus
Lj1A735T46 Lonicera japonica
Lj1C735T3 Lonicera japonica
Lj2g0006312 Lotus japonicus
Lj3g0006045 Lotus japonicus
Lj3g0021806 Lotus japonicus
Lj3g0026770 Lotus japonicus
Lju41E32T0 Lonicera japonica
Lsat_1_v5_gn_2_3941 Lactuca sativa
Lsat_1_v5_gn_3_137700 Lactuca sativa
Lsat_1_v5_gn_8_131741 Lactuca sativa
Manes.06G013500 Manihot esculenta
Manes.13G150800 Manihot esculenta
Manes.13G150900 Manihot esculenta
Manes.13G150950 Manihot esculenta
Mapoly0071s0092 Marchantia polymorpha
Mapoly0085s0037 Marchantia polymorpha
MBI02_g26441_MAGBIO Magnolia biondii
MBI02_g35916_MAGBIO Magnolia biondii
MBI02_g46699_MAGBIO Magnolia biondii
MBI02_g48137_MAGBIO Magnolia biondii
MBI04_g38761_MAGBIO Magnolia biondii
MBI06_g08467_MAGBIO Magnolia biondii
MCO02G305 Micromonas commoda
MCO09G677 Micromonas commoda
MD09G1092400 Malus domestica
MD09G1092500 Malus domestica
MD09G1092600 Malus domestica
MD17G1082400 Malus domestica
MD17G1082500 Malus domestica
MD17G1082600 Malus domestica
MD17G1082700 Malus domestica
Medtr2g090055 Medicago truncatula
Medtr2g090060 Medicago truncatula
Medtr2g090070 Medicago truncatula
Medtr4g046043 Medicago truncatula
Medtr4g065010 Medicago truncatula
MELO3C013524.2 Cucumis melo
Migut.H00150 Erythranthe guttata
Migut.H01027 Erythranthe guttata
Migut.H01028 Erythranthe guttata
MSTRG.14186 Avicennia marina
MSTRG.23988 Avicennia marina
Nitab4.5_0002260g0270 Nicotiana tabacum
Nitab4.5_0003018g0040 Nicotiana tabacum
Nitab4.5_0003069g0040 Nicotiana tabacum
Nitab4.5_0003358g0010 Nicotiana tabacum
Nitab4.5_0005244g0040 Nicotiana tabacum
Nitab4.5_0006575g0040 Nicotiana tabacum
Nitab4.5_0007732g0020 Nicotiana tabacum
Nitab4.5_0008772g0020 Nicotiana tabacum
Nitab4.5_0013575g0010 Nicotiana tabacum
Nn1g03931 Nelumbo nucifera
Nn1g06728 Nelumbo nucifera
Nn1g06729 Nelumbo nucifera
Nn1g06730 Nelumbo nucifera
Oeu015786.1 Olea europaea
Oeu015814.1 Olea europaea
Oeu015815.1 Olea europaea
Oeu025510.1 Olea europaea
Oeu047331.1 Olea europaea
Os03g0582000 Oryza sativa ssp. japonica
Os06g0128000 Oryza sativa ssp. japonica
Os07g0530300 Oryza sativa ssp. japonica
Peaxi162Scf00132g00081 Petunia axillaris
Peaxi162Scf00132g00731 Petunia axillaris
Peaxi162Scf00132g00822 Petunia axillaris
Peaxi162Scf00423g00066 Petunia axillaris
PGR042G1344 Punica granatum
PGR142G0421 Punica granatum
PGSC0003DMG400018320 Solanum tuberosum
PGSC0003DMG400018321 Solanum tuberosum
PGSC0003DMG400022306 Solanum tuberosum
Phvul.003G044600 Phaseolus vulgaris
Phvul.005G107300 Phaseolus vulgaris
Phvul.011G177800 Phaseolus vulgaris
Potri.013G145600 Populus trichocarpa
Potri.013G145700 Populus trichocarpa
Potri.013G145800 Populus trichocarpa
Potri.019G104700 Populus trichocarpa
Pp3c2_17510 Physcomitrium patens
Pp3c6_17280 Physcomitrium patens
PRCOL_00005805 Prasinoderma coloniale
Prupe.3G232600 Prunus persica
Prupe.3G232700 Prunus persica
Psat5g270040 Pisum sativum
Psat5g270080 Pisum sativum
Psat7g197120 Pisum sativum
PSO017G7338 Papaver somniferum
PSO339G1404 Papaver somniferum
PSO339G1568 Papaver somniferum
PSO384G0971 Papaver somniferum
PSO384G2148 Papaver somniferum
PSO541G0359 Papaver somniferum
PSO675G2972 Papaver somniferum
PSO675G3871 Papaver somniferum
PSO675G3991 Papaver somniferum
PSO675G6940 Papaver somniferum
QL08p048209 Quercus lobata
QL10p048419 Quercus lobata
QL10p048424 Quercus lobata
QL10p048442 Quercus lobata
RcHm_v2.0_Chr2g0127151 Rosa chinensis
RcHm_v2.0_Chr2g0162051 Rosa chinensis
RcHm_v2.0_Chr2g0162061 Rosa chinensis
Rhsim04G0021700 Rhododendron simsii
Rhsim04G0065900 Rhododendron simsii
Rhsim06G0150200 Rhododendron simsii
Sabra13G0117300 Salix brachista
Sabra13G0117400 Salix brachista
SalBow1G0343 Salvia bowleyana
SalBow1G1242 Salvia bowleyana
SalBow1G8609 Salvia bowleyana
SalBow4G1514 Salvia bowleyana
SalBow6G0009 Salvia bowleyana
SalBow7G0057 Salvia bowleyana
SalBow7G2523 Salvia bowleyana
SalBow7G4035 Salvia bowleyana
SalBow7G4170 Salvia bowleyana
Sc03g0002190 Simmondsia chinensis
Sc06g0009180 Simmondsia chinensis
Sc12g0002730 Simmondsia chinensis
Sc12g0003980 Simmondsia chinensis
Sed0009336 Sechium edule
Sed0010350 Sechium edule
Sed0013701 Sechium edule
Sed0014445 Sechium edule
Sed0018478 Sechium edule
SEGI_15509 Sequoiadendron giganteum
SEGI_26592 Sequoiadendron giganteum
SGA_v2.0_scaffold130G34329 Striga asiatica
SGA_v2.0_scaffold135G34841 Striga asiatica
SGA_v2.0_scaffold159G37632 Striga asiatica
SGA_v2.0_scaffold3G01553 Striga asiatica
SMO351G0323 Selaginella moellendorffii
SMO356G0334 Selaginella moellendorffii
Solyc07g054420.2 Solanum lycopersicum
Solyc07g054430.3 Solanum lycopersicum
Solyc07g064840.3 Solanum lycopersicum
Sopen07g028350 Solanum pennellii
Sopen07g028360 Solanum pennellii
Sopen07g033040 Solanum pennellii
Sp3g34070 Schrenkiella parvula
TAR627G0343 Trochodendron aralioides
TAR627G0582 Trochodendron aralioides
TAR629G1647 Trochodendron aralioides
TAR629G2626 Trochodendron aralioides
TAR629G2902 Trochodendron aralioides
THA.LOC104811178 Tarenaya hassleriana
THA.LOC104814491 Tarenaya hassleriana
Thecc.02G172900 Theobroma cacao
Thecc.02G173000 Theobroma cacao
Thecc.02G173100 Theobroma cacao
Thhalv10001991m.g Eutrema salsugineum
TPR.G21647 Trifolium pratense
TPR.G27095 Trifolium pratense
TPR.G27124 Trifolium pratense
TPR.G27126 Trifolium pratense
TPR.G40142 Trifolium pratense
TWI18G1087 Tripterygium wilfordii
TWI18G1093 Tripterygium wilfordii
TWI36G0604 Tripterygium wilfordii
unitig_62.g23188 Utricularia gibba
unitig_748.g8143 Utricularia gibba
vmacro09267 Vaccinium macrocarpon
vmacro09268 Vaccinium macrocarpon
vmacro12265 Vaccinium macrocarpon
VMungo1080G0966 Vigna mungo
VMungo1127G0255 Vigna mungo
VMungo1215G0573 Vigna mungo
Zm00001eb072880 Zea mays
Zm00001eb194600 Zea mays
Zm00001eb194610 Zea mays
Zm00001eb200630 Zea mays
Zm00001eb219580 Zea mays
Zm00001eb225500 Zea mays
Zm00001eb350110 Zea mays
Zm00001eb378790 Zea mays
Zm00001eb414500 Zea mays
Zm00001eb414510 Zea mays

User provided reference genes

Program Settings