Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001891', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '348', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p33120' => 'bna', 'A03p42500' => 'bna', 'A05p26910' => 'bna', 'A05p26920' => 'bna', 'Aa31LG8G8410' => 'aar', 'Aa31LG8G8420' => 'aar', 'Aa31LG9G2160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2694' => 'aag', 'Actinidia00164' => 'ach', 'Actinidia12501' => 'ach', 'Actinidia12502' => 'ach', 'Actinidia30510' => 'ach', 'Actinidia32078' => 'ach', 'Actinidia32079' => 'ach', 'Ah.01g003690' => 'amhyb', 'Ah.01g014600' => 'amhyb', 'Ah.15g093450' => 'amhyb', 'AL3G35970' => 'aly', 'AL3G35980' => 'aly', 'AL3G36020' => 'aly', 'AL5G18570' => 'aly', 'AL7G32320' => 'aly', 'Aqoxy4G02095' => 'aox', 'Aqoxy4G02096' => 'aox', 'Aqoxy4G02099' => 'aox', 'Aqoxy4G02100' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VZW82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62D34N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C63SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI1LQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FTMH30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3MG1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZYWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG5XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA654' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDYX4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX9XDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1IBZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TRUR1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAPR04' => 'arhy', 'AT3G21820' => 'ath', 'AT3G21865' => 'ath', 'ATR0008G001' => 'atr', 'ATR0618G228' => 'atr', 'ATR0804G013' => 'atr', 'Atru.chr6.3145' => 'acertr', 'Atru.chr6.3148' => 'acertr', 'Atru.chr6.3149' => 'acertr', 'Atru.chr8.690' => 'acertr', 'Atru.chr8.691' => 'acertr', 'AUR62025059' => 'cqu', 'AUR62037141' => 'cqu', 'AUR62040522' => 'cqu', 'AUR62040523' => 'cqu', 'BcaB04g19187' => 'bca', 'BcaB04g20555' => 'bca', 'BcaB06g26287' => 'bca', 'BcaB06g26288' => 'bca', 'BcaC01g03476' => 'bca', 'BcaC05g28120' => 'bca', 'BcaC05g28122' => 'bca', 'BcaC09g49122' => 'bca', 'BcaC09g49125' => 'bca', 'BcaC09g49127' => 'bca', 'BcaC09g49129' => 'bca', 'BolC1t04190H' => 'bol', 'BolC1t04191H' => 'bol', 'BolC3t17487H' => 'bol', 'BolC5t32890H' => 'bol', 'BolC5t32893H' => 'bol', 'BraA01t03435Z' => 'bra', 'BraA03t13403Z' => 'bra', 'BraA05t21571Z' => 'bra', 'BraA05t21572Z' => 'bra', 'C01p42350' => 'bna', 'C01p42360' => 'bna', 'C03p52060' => 'bna', 'C05p41520' => 'bna', 'C05p41560' => 'bna', 'CAN.G80.19' => 'can', 'CAN.G921.6' => 'can', 'CAN.G921.8' => 'can', 'CANSAT64G0421' => 'cansat', 'CANSAT64G2761' => 'cansat', 'CARHR097810' => 'chi', 'CARHR097820' => 'chi', 'Carub.0003s2190' => 'cru', 'Carub.0003s2193' => 'cru', 'Ca_27743_v3' => 'car', 'CBR_g22069' => 'cbr', 'Cc05_g05050' => 'ccan', 'Cc05_g05140' => 'ccan', 'CDE01G0775' => 'cde', 'CDE04G1330' => 'cde', 'CDE04G3419' => 'cde', 'CDE07G1567' => 'cde', 'Cfa014439' => 'cfa', 'Cfa024134' => 'cfa', 'Ciclev10015025m.g' => 'ccl', 'Ciclev10016204m.g' => 'ccl', 'CiPaw.03G162900' => 'cil', 'CiPaw.03G163000' => 'cil', 'CiPaw.04G117900' => 'cil', 'ClCG02G001770' => 'cla', 'ClCG02G008440' => 'cla', 'ClCG02G008450' => 'cla', 'COL.COLO4_12984' => 'col', 'Cpa.g.sc8.235' => 'cpa', 'Cpa.g.sc8.236' => 'cpa', 'Cre01.g041100' => 'cre', 'Cre02.g116850' => 'cre', 'Cre06.g283150' => 'cre', 'CsaV3_2G035180' => 'csa', 'CsaV3_2G035190' => 'csa', 'CsaV3_7G003770' => 'csa', 'CSS0016042' => 'camsi', 'CSS0020073' => 'camsi', 'CSS0024189' => 'camsi', 'CSS0035637' => 'camsi', 'CSS0039018' => 'camsi', 'CSS0049956' => 'camsi', 'DCAR_002621' => 'dca', 'DCAR_012956' => 'dca', 'DCAR_012957' => 'dca', 'DCAR_012959' => 'dca', 'DCAR_019211' => 'dca', 'Dinv02385' => 'din', 'Dinv18531' => 'din', 'Dinv39686' => 'din', 'Dinv39687' => 'din', 'Duzib052G0092' => 'dzi', 'Duzib052G0734' => 'dzi', 'Duzib132G0769' => 'dzi', 'Duzib248G1135' => 'dzi', 'ECA238G0562' => 'eca', 'EL10Ac7g17313' => 'bvu', 'EL10Ac9g20654' => 'bvu', 'Eucgr.K00818' => 'egr', 'Eucgr.K00819' => 'egr', 'Eucgr.K00821' => 'egr', 'Eucgr.K00822' => 'egr', 'Eucgr.K00824' => 'egr', 'Eucgr.K00825' => 'egr', 'Eucgr.K00839' => 'egr', 'Eucgr.K00860' => 'egr', 'Eucgr.K00861' => 'egr', 'FAN02G0497' => 'fan', 'FAN05G1073' => 'fan', 'FAN09G1075' => 'fan', 'FAN09G3447' => 'fan', 'FAN14G5299' => 'fan', 'FvH4_6g43540' => 'fve', 'FvH4_6g43550' => 'fve', 'Glyma.12G195700' => 'gma', 'Glyma.12G195800' => 'gma', 'Glyma.13G037950' => 'gma', 'Glyma.13G306700' => 'gma', 'Glyma.13G306800' => 'gma', 'Gohir.A01G013300' => 'ghi', 'Gohir.A03G163600' => 'ghi', 'Gohir.A12G134800' => 'ghi', 'Gohir.D01G014600' => 'ghi', 'Gohir.D02G187000' => 'ghi', 'Gohir.D12G138400' => 'ghi', 'Gorai.002G016300' => 'gra', 'Gorai.005G209300' => 'gra', 'Gorai.008G149900' => 'gra', 'GSVIVG01008772001' => 'vvi', 'GSVIVG01030624001' => 'vvi', 'GSVIVG01030625001' => 'vvi', 'HanXRQChr02g0039391' => 'han', 'HanXRQChr10g0297471' => 'han', 'HanXRQChr10g0297501' => 'han', 'HanXRQChr15g0479201' => 'han', 'HanXRQChr17g0560941' => 'han', 'Haze_12897' => 'cav', 'Haze_12898' => 'cav', 'Hma1.2p1_0439F.1_g153260' => 'hma', 'Hma1.2p1_0613F.1_g189170' => 'hma', 'HPP92_004139' => 'vpl', 'HPP92_009055' => 'vpl', 'HPP92_009391' => 'vpl', 'HPP92_009396' => 'vpl', 'Hund01107' => 'sun', 'Hund01141' => 'sun', 'Lalb_Chr01g0005561' => 'lal', 'Lalb_Chr03g0028901' => 'lal', 'Lalb_Chr14g0375711' => 'lal', 'Lalb_Chr24g0393071' => 'lal', 'Lj1A756G86' => 'lonja', 'Lj3A852T54' => 'lonja', 'Lj3g0010899' => 'lja', 'Lj3g0012140' => 'lja', 'Lj3g0025447' => 'lja', 'Lj8A122T60' => 'lonja', 'Lj8A122T61' => 'lonja', 'Lsat_1_v5_gn_3_136420' => 'lsa', 'Lsat_1_v5_gn_3_43721' => 'lsa', 'Lsat_1_v5_gn_4_69321' => 'lsa', 'Lsat_1_v5_gn_6_102801' => 'lsa', 'Lsat_1_v5_gn_8_129400' => 'lsa', 'Manes.12G078400' => 'mes', 'Manes.13G073100' => 'mes', 'Mapoly0037s0074' => 'mpo', 'Mapoly0057s0093' => 'mpo', 'MBI01_g06556_MAGBIO' => 'mbi', 'MBI01_g08957_MAGBIO' => 'mbi', 'MBI03_g22259_MAGBIO' => 'mbi', 'MBI06_g15670_MAGBIO' => 'mbi', 'MBI18_g07895_MAGBIO' => 'mbi', 'MBI18_g10800_MAGBIO' => 'mbi', 'MBI18_g17390_MAGBIO' => 'mbi', 'MBI18_g19140_MAGBIO' => 'mbi', 'MBI18_g23508_MAGBIO' => 'mbi', 'MBI18_g41217_MAGBIO' => 'mbi', 'MBI18_g41692_MAGBIO' => 'mbi', 'MCO05G707' => 'mco', 'MCO06G294' => 'mco', 'MCO15G351' => 'mco', 'MCO16G494' => 'mco', 'MD09G1105000' => 'mdo', 'MD09G1105100' => 'mdo', 'MD17G1092700' => 'mdo', 'Medtr2g088740' => 'mtr', 'Medtr2g088820' => 'mtr', 'Medtr2g088850' => 'mtr', 'MELO3C018802.2' => 'cme', 'MELO3C019235.2' => 'cme', 'MELO3C019236.2' => 'cme', 'Migut.H01220' => 'egut', 'Migut.M00394' => 'egut', 'Migut.M00395' => 'egut', 'MSTRG.12288' => 'ama', 'MSTRG.14154' => 'ama', 'Nitab4.5_0000631g0040' => 'nta', 'Nitab4.5_0001176g0130' => 'nta', 'Nitab4.5_0001176g0150' => 'nta', 'Nitab4.5_0001176g0160' => 'nta', 'Nitab4.5_0005894g0030' => 'nta', 'Nitab4.5_0005894g0040' => 'nta', 'Nitab4.5_0006207g0030' => 'nta', 'Nn1g03668' => 'nnu', 'Nn1g06995' => 'nnu', 'Oeu011080.1' => 'oeu', 'Oeu041941.2' => 'oeu', 'Oeu041959.1' => 'oeu', 'Oeu052537.1' => 'oeu', 'Oeu052538.1' => 'oeu', 'Os04g0629000' => 'osa', 'Os04g0629100' => 'osa', 'Os04g0672800' => 'osa', 'Peaxi162Scf00007g01229' => 'pax', 'Peaxi162Scf00007g01230' => 'pax', 'PGR142G0845' => 'pgr', 'PGR142G2396' => 'pgr', 'PGSC0003DMG400026174' => 'stu', 'Phvul.005G113600' => 'pvu', 'Phvul.005G113700' => 'pvu', 'Potri.007G121600' => 'ptr', 'Potri.017G038700' => 'ptr', 'Potri.017G038800' => 'ptr', 'Pp3c13_21910' => 'ppa', 'Pp3c3_16800' => 'ppa', 'Pp3c3_16810' => 'ppa', 'PRCOL_00001357' => 'pco', 'PRCOL_00003191' => 'pco', 'Prupe.3G147600' => 'ppe', 'Prupe.3G220400' => 'ppe', 'Prupe.3G220500' => 'ppe', 'Psat0s4720g0040' => 'psa', 'Psat5g265280' => 'psa', 'Psat5g265320' => 'psa', 'Psat6g077080' => 'psa', 'Psat6g077120' => 'psa', 'PSO063G3135' => 'pso', 'PSO541G2722' => 'pso', 'PSO541G4560' => 'pso', 'PSO675G1171' => 'pso', 'QL03p043045' => 'qlo', 'QL08p033823' => 'qlo', 'QL08p033836' => 'qlo', 'RcHm_v2.0_Chr2g0160071' => 'rch', 'RcHm_v2.0_Chr2g0160081' => 'rch', 'Rhsim04G0056600' => 'rsi', 'Rhsim06G0158100' => 'rsi', 'Sabra07G0098300' => 'sbr', 'Sabra08G0110200' => 'sbr', 'Sabra11G0073000' => 'sbr', 'Sabra17G0025700' => 'sbr', 'Sabra17G0025800' => 'sbr', 'SalBow1G3276' => 'sbo', 'SalBow7G2009' => 'sbo', 'SalBow7G4184' => 'sbo', 'Sc12g0002380' => 'sci', 'Sc12g0002390' => 'sci', 'Sed0013568' => 'sed', 'Sed0014701' => 'sed', 'Sed0020603' => 'sed', 'Sed0022558' => 'sed', 'SEGI_12996' => 'sgi', 'SEGI_18250' => 'sgi', 'SEGI_18604' => 'sgi', 'SEGI_20287' => 'sgi', 'SEGI_29039' => 'sgi', 'SEGI_35415' => 'sgi', 'SGA_v2.0_scaffold49G18333' => 'sas', 'SGA_v2.0_scaffold70G23419' => 'sas', 'SGA_v2.0_scaffold70G23420' => 'sas', 'SMO167G0005' => 'smo', 'SMO347G0022' => 'smo', 'SMO356G0403' => 'smo', 'Solyc07g052570.4' => 'sly', 'Solyc07g052600.3' => 'sly', 'Solyc12g005760.2' => 'sly', 'Sopen07g026180' => 'spe', 'Sopen07g026210' => 'spe', 'Sopen12g001680' => 'spe', 'Sp3g19820' => 'spa', 'Sp3g19830' => 'spa', 'TAR624G1196' => 'tar', 'TAR627G0099' => 'tar', 'TAR629G0018' => 'tar', 'TAR629G3333' => 'tar', 'THA.LOC104802537' => 'tha', 'THA.LOC104808497' => 'tha', 'THA.LOC104821752' => 'tha', 'Thecc.02G162300' => 'tca', 'Thecc.02G162400' => 'tca', 'Thhalv10020639m.g' => 'esa', 'Thhalv10021287m.g' => 'esa', 'TPR.G4158' => 'tpr', 'TPR.G4167' => 'tpr', 'TWI18G0733' => 'twi', 'TWI18G0897' => 'twi', 'TWI75G1691' => 'twi', 'unitig_21.g20003' => 'ugi', 'unitig_26.g9659' => 'ugi', 'unitig_578.g16774' => 'ugi', 'vmacro09324' => 'vma', 'vmacro10802' => 'vma', 'vmacro12227' => 'vma', 'vmacro12228' => 'vma', 'VMungo1080G1248' => 'vmu', 'VMungo1080G1612' => 'vmu', 'Zm00001eb066610' => 'zma', 'Zm00001eb069570' => 'zma', 'Zm00001eb069580' => 'zma', 'Zm00001eb431430' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001891', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001891' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001891', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '348', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001891' ) ), 'genes' => array( 'A01p33120' => 'bna', 'A03p42500' => 'bna', 'A05p26910' => 'bna', 'A05p26920' => 'bna', 'Aa31LG8G8410' => 'aar', 'Aa31LG8G8420' => 'aar', 'Aa31LG9G2160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2694' => 'aag', 'Actinidia00164' => 'ach', 'Actinidia12501' => 'ach', 'Actinidia12502' => 'ach', 'Actinidia30510' => 'ach', 'Actinidia32078' => 'ach', 'Actinidia32079' => 'ach', 'Ah.01g003690' => 'amhyb', 'Ah.01g014600' => 'amhyb', 'Ah.15g093450' => 'amhyb', 'AL3G35970' => 'aly', 'AL3G35980' => 'aly', 'AL3G36020' => 'aly', 'AL5G18570' => 'aly', 'AL7G32320' => 'aly', 'Aqoxy4G02095' => 'aox', 'Aqoxy4G02096' => 'aox', 'Aqoxy4G02099' => 'aox', 'Aqoxy4G02100' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VZW82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62D34N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C63SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI1LQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FTMH30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3MG1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZYWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG5XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA654' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDYX4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX9XDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1IBZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TRUR1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAPR04' => 'arhy', 'AT3G21820' => 'ath', 'AT3G21865' => 'ath', 'ATR0008G001' => 'atr', 'ATR0618G228' => 'atr', 'ATR0804G013' => 'atr', 'Atru.chr6.3145' => 'acertr', 'Atru.chr6.3148' => 'acertr', 'Atru.chr6.3149' => 'acertr', 'Atru.chr8.690' => 'acertr', 'Atru.chr8.691' => 'acertr', 'AUR62025059' => 'cqu', 'AUR62037141' => 'cqu', 'AUR62040522' => 'cqu', 'AUR62040523' => 'cqu', 'BcaB04g19187' => 'bca', 'BcaB04g20555' => 'bca', 'BcaB06g26287' => 'bca', 'BcaB06g26288' => 'bca', 'BcaC01g03476' => 'bca', 'BcaC05g28120' => 'bca', 'BcaC05g28122' => 'bca', 'BcaC09g49122' => 'bca', 'BcaC09g49125' => 'bca', 'BcaC09g49127' => 'bca', 'BcaC09g49129' => 'bca', 'BolC1t04190H' => 'bol', 'BolC1t04191H' => 'bol', 'BolC3t17487H' => 'bol', 'BolC5t32890H' => 'bol', 'BolC5t32893H' => 'bol', 'BraA01t03435Z' => 'bra', 'BraA03t13403Z' => 'bra', 'BraA05t21571Z' => 'bra', 'BraA05t21572Z' => 'bra', 'C01p42350' => 'bna', 'C01p42360' => 'bna', 'C03p52060' => 'bna', 'C05p41520' => 'bna', 'C05p41560' => 'bna', 'CAN.G80.19' => 'can', 'CAN.G921.6' => 'can', 'CAN.G921.8' => 'can', 'CANSAT64G0421' => 'cansat', 'CANSAT64G2761' => 'cansat', 'CARHR097810' => 'chi', 'CARHR097820' => 'chi', 'Carub.0003s2190' => 'cru', 'Carub.0003s2193' => 'cru', 'Ca_27743_v3' => 'car', 'CBR_g22069' => 'cbr', 'Cc05_g05050' => 'ccan', 'Cc05_g05140' => 'ccan', 'CDE01G0775' => 'cde', 'CDE04G1330' => 'cde', 'CDE04G3419' => 'cde', 'CDE07G1567' => 'cde', 'Cfa014439' => 'cfa', 'Cfa024134' => 'cfa', 'Ciclev10015025m.g' => 'ccl', 'Ciclev10016204m.g' => 'ccl', 'CiPaw.03G162900' => 'cil', 'CiPaw.03G163000' => 'cil', 'CiPaw.04G117900' => 'cil', 'ClCG02G001770' => 'cla', 'ClCG02G008440' => 'cla', 'ClCG02G008450' => 'cla', 'COL.COLO4_12984' => 'col', 'Cpa.g.sc8.235' => 'cpa', 'Cpa.g.sc8.236' => 'cpa', 'Cre01.g041100' => 'cre', 'Cre02.g116850' => 'cre', 'Cre06.g283150' => 'cre', 'CsaV3_2G035180' => 'csa', 'CsaV3_2G035190' => 'csa', 'CsaV3_7G003770' => 'csa', 'CSS0016042' => 'camsi', 'CSS0020073' => 'camsi', 'CSS0024189' => 'camsi', 'CSS0035637' => 'camsi', 'CSS0039018' => 'camsi', 'CSS0049956' => 'camsi', 'DCAR_002621' => 'dca', 'DCAR_012956' => 'dca', 'DCAR_012957' => 'dca', 'DCAR_012959' => 'dca', 'DCAR_019211' => 'dca', 'Dinv02385' => 'din', 'Dinv18531' => 'din', 'Dinv39686' => 'din', 'Dinv39687' => 'din', 'Duzib052G0092' => 'dzi', 'Duzib052G0734' => 'dzi', 'Duzib132G0769' => 'dzi', 'Duzib248G1135' => 'dzi', 'ECA238G0562' => 'eca', 'EL10Ac7g17313' => 'bvu', 'EL10Ac9g20654' => 'bvu', 'Eucgr.K00818' => 'egr', 'Eucgr.K00819' => 'egr', 'Eucgr.K00821' => 'egr', 'Eucgr.K00822' => 'egr', 'Eucgr.K00824' => 'egr', 'Eucgr.K00825' => 'egr', 'Eucgr.K00839' => 'egr', 'Eucgr.K00860' => 'egr', 'Eucgr.K00861' => 'egr', 'FAN02G0497' => 'fan', 'FAN05G1073' => 'fan', 'FAN09G1075' => 'fan', 'FAN09G3447' => 'fan', 'FAN14G5299' => 'fan', 'FvH4_6g43540' => 'fve', 'FvH4_6g43550' => 'fve', 'Glyma.12G195700' => 'gma', 'Glyma.12G195800' => 'gma', 'Glyma.13G037950' => 'gma', 'Glyma.13G306700' => 'gma', 'Glyma.13G306800' => 'gma', 'Gohir.A01G013300' => 'ghi', 'Gohir.A03G163600' => 'ghi', 'Gohir.A12G134800' => 'ghi', 'Gohir.D01G014600' => 'ghi', 'Gohir.D02G187000' => 'ghi', 'Gohir.D12G138400' => 'ghi', 'Gorai.002G016300' => 'gra', 'Gorai.005G209300' => 'gra', 'Gorai.008G149900' => 'gra', 'GSVIVG01008772001' => 'vvi', 'GSVIVG01030624001' => 'vvi', 'GSVIVG01030625001' => 'vvi', 'HanXRQChr02g0039391' => 'han', 'HanXRQChr10g0297471' => 'han', 'HanXRQChr10g0297501' => 'han', 'HanXRQChr15g0479201' => 'han', 'HanXRQChr17g0560941' => 'han', 'Haze_12897' => 'cav', 'Haze_12898' => 'cav', 'Hma1.2p1_0439F.1_g153260' => 'hma', 'Hma1.2p1_0613F.1_g189170' => 'hma', 'HPP92_004139' => 'vpl', 'HPP92_009055' => 'vpl', 'HPP92_009391' => 'vpl', 'HPP92_009396' => 'vpl', 'Hund01107' => 'sun', 'Hund01141' => 'sun', 'Lalb_Chr01g0005561' => 'lal', 'Lalb_Chr03g0028901' => 'lal', 'Lalb_Chr14g0375711' => 'lal', 'Lalb_Chr24g0393071' => 'lal', 'Lj1A756G86' => 'lonja', 'Lj3A852T54' => 'lonja', 'Lj3g0010899' => 'lja', 'Lj3g0012140' => 'lja', 'Lj3g0025447' => 'lja', 'Lj8A122T60' => 'lonja', 'Lj8A122T61' => 'lonja', 'Lsat_1_v5_gn_3_136420' => 'lsa', 'Lsat_1_v5_gn_3_43721' => 'lsa', 'Lsat_1_v5_gn_4_69321' => 'lsa', 'Lsat_1_v5_gn_6_102801' => 'lsa', 'Lsat_1_v5_gn_8_129400' => 'lsa', 'Manes.12G078400' => 'mes', 'Manes.13G073100' => 'mes', 'Mapoly0037s0074' => 'mpo', 'Mapoly0057s0093' => 'mpo', 'MBI01_g06556_MAGBIO' => 'mbi', 'MBI01_g08957_MAGBIO' => 'mbi', 'MBI03_g22259_MAGBIO' => 'mbi', 'MBI06_g15670_MAGBIO' => 'mbi', 'MBI18_g07895_MAGBIO' => 'mbi', 'MBI18_g10800_MAGBIO' => 'mbi', 'MBI18_g17390_MAGBIO' => 'mbi', 'MBI18_g19140_MAGBIO' => 'mbi', 'MBI18_g23508_MAGBIO' => 'mbi', 'MBI18_g41217_MAGBIO' => 'mbi', 'MBI18_g41692_MAGBIO' => 'mbi', 'MCO05G707' => 'mco', 'MCO06G294' => 'mco', 'MCO15G351' => 'mco', 'MCO16G494' => 'mco', 'MD09G1105000' => 'mdo', 'MD09G1105100' => 'mdo', 'MD17G1092700' => 'mdo', 'Medtr2g088740' => 'mtr', 'Medtr2g088820' => 'mtr', 'Medtr2g088850' => 'mtr', 'MELO3C018802.2' => 'cme', 'MELO3C019235.2' => 'cme', 'MELO3C019236.2' => 'cme', 'Migut.H01220' => 'egut', 'Migut.M00394' => 'egut', 'Migut.M00395' => 'egut', 'MSTRG.12288' => 'ama', 'MSTRG.14154' => 'ama', 'Nitab4.5_0000631g0040' => 'nta', 'Nitab4.5_0001176g0130' => 'nta', 'Nitab4.5_0001176g0150' => 'nta', 'Nitab4.5_0001176g0160' => 'nta', 'Nitab4.5_0005894g0030' => 'nta', 'Nitab4.5_0005894g0040' => 'nta', 'Nitab4.5_0006207g0030' => 'nta', 'Nn1g03668' => 'nnu', 'Nn1g06995' => 'nnu', 'Oeu011080.1' => 'oeu', 'Oeu041941.2' => 'oeu', 'Oeu041959.1' => 'oeu', 'Oeu052537.1' => 'oeu', 'Oeu052538.1' => 'oeu', 'Os04g0629000' => 'osa', 'Os04g0629100' => 'osa', 'Os04g0672800' => 'osa', 'Peaxi162Scf00007g01229' => 'pax', 'Peaxi162Scf00007g01230' => 'pax', 'PGR142G0845' => 'pgr', 'PGR142G2396' => 'pgr', 'PGSC0003DMG400026174' => 'stu', 'Phvul.005G113600' => 'pvu', 'Phvul.005G113700' => 'pvu', 'Potri.007G121600' => 'ptr', 'Potri.017G038700' => 'ptr', 'Potri.017G038800' => 'ptr', 'Pp3c13_21910' => 'ppa', 'Pp3c3_16800' => 'ppa', 'Pp3c3_16810' => 'ppa', 'PRCOL_00001357' => 'pco', 'PRCOL_00003191' => 'pco', 'Prupe.3G147600' => 'ppe', 'Prupe.3G220400' => 'ppe', 'Prupe.3G220500' => 'ppe', 'Psat0s4720g0040' => 'psa', 'Psat5g265280' => 'psa', 'Psat5g265320' => 'psa', 'Psat6g077080' => 'psa', 'Psat6g077120' => 'psa', 'PSO063G3135' => 'pso', 'PSO541G2722' => 'pso', 'PSO541G4560' => 'pso', 'PSO675G1171' => 'pso', 'QL03p043045' => 'qlo', 'QL08p033823' => 'qlo', 'QL08p033836' => 'qlo', 'RcHm_v2.0_Chr2g0160071' => 'rch', 'RcHm_v2.0_Chr2g0160081' => 'rch', 'Rhsim04G0056600' => 'rsi', 'Rhsim06G0158100' => 'rsi', 'Sabra07G0098300' => 'sbr', 'Sabra08G0110200' => 'sbr', 'Sabra11G0073000' => 'sbr', 'Sabra17G0025700' => 'sbr', 'Sabra17G0025800' => 'sbr', 'SalBow1G3276' => 'sbo', 'SalBow7G2009' => 'sbo', 'SalBow7G4184' => 'sbo', 'Sc12g0002380' => 'sci', 'Sc12g0002390' => 'sci', 'Sed0013568' => 'sed', 'Sed0014701' => 'sed', 'Sed0020603' => 'sed', 'Sed0022558' => 'sed', 'SEGI_12996' => 'sgi', 'SEGI_18250' => 'sgi', 'SEGI_18604' => 'sgi', 'SEGI_20287' => 'sgi', 'SEGI_29039' => 'sgi', 'SEGI_35415' => 'sgi', 'SGA_v2.0_scaffold49G18333' => 'sas', 'SGA_v2.0_scaffold70G23419' => 'sas', 'SGA_v2.0_scaffold70G23420' => 'sas', 'SMO167G0005' => 'smo', 'SMO347G0022' => 'smo', 'SMO356G0403' => 'smo', 'Solyc07g052570.4' => 'sly', 'Solyc07g052600.3' => 'sly', 'Solyc12g005760.2' => 'sly', 'Sopen07g026180' => 'spe', 'Sopen07g026210' => 'spe', 'Sopen12g001680' => 'spe', 'Sp3g19820' => 'spa', 'Sp3g19830' => 'spa', 'TAR624G1196' => 'tar', 'TAR627G0099' => 'tar', 'TAR629G0018' => 'tar', 'TAR629G3333' => 'tar', 'THA.LOC104802537' => 'tha', 'THA.LOC104808497' => 'tha', 'THA.LOC104821752' => 'tha', 'Thecc.02G162300' => 'tca', 'Thecc.02G162400' => 'tca', 'Thhalv10020639m.g' => 'esa', 'Thhalv10021287m.g' => 'esa', 'TPR.G4158' => 'tpr', 'TPR.G4167' => 'tpr', 'TWI18G0733' => 'twi', 'TWI18G0897' => 'twi', 'TWI75G1691' => 'twi', 'unitig_21.g20003' => 'ugi', 'unitig_26.g9659' => 'ugi', 'unitig_578.g16774' => 'ugi', 'vmacro09324' => 'vma', 'vmacro10802' => 'vma', 'vmacro12227' => 'vma', 'vmacro12228' => 'vma', 'VMungo1080G1248' => 'vmu', 'VMungo1080G1612' => 'vmu', 'Zm00001eb066610' => 'zma', 'Zm00001eb069570' => 'zma', 'Zm00001eb069580' => 'zma', 'Zm00001eb431430' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001891' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001891' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001891' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001891' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001891', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '348', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p33120' => 'bna', 'A03p42500' => 'bna', 'A05p26910' => 'bna', 'A05p26920' => 'bna', 'Aa31LG8G8410' => 'aar', 'Aa31LG8G8420' => 'aar', 'Aa31LG9G2160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2694' => 'aag', 'Actinidia00164' => 'ach', 'Actinidia12501' => 'ach', 'Actinidia12502' => 'ach', 'Actinidia30510' => 'ach', 'Actinidia32078' => 'ach', 'Actinidia32079' => 'ach', 'Ah.01g003690' => 'amhyb', 'Ah.01g014600' => 'amhyb', 'Ah.15g093450' => 'amhyb', 'AL3G35970' => 'aly', 'AL3G35980' => 'aly', 'AL3G36020' => 'aly', 'AL5G18570' => 'aly', 'AL7G32320' => 'aly', 'Aqoxy4G02095' => 'aox', 'Aqoxy4G02096' => 'aox', 'Aqoxy4G02099' => 'aox', 'Aqoxy4G02100' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VZW82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62D34N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C63SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI1LQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FTMH30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3MG1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZYWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG5XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA654' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDYX4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX9XDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1IBZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TRUR1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAPR04' => 'arhy', 'AT3G21820' => 'ath', 'AT3G21865' => 'ath', 'ATR0008G001' => 'atr', 'ATR0618G228' => 'atr', 'ATR0804G013' => 'atr', 'Atru.chr6.3145' => 'acertr', 'Atru.chr6.3148' => 'acertr', 'Atru.chr6.3149' => 'acertr', 'Atru.chr8.690' => 'acertr', 'Atru.chr8.691' => 'acertr', 'AUR62025059' => 'cqu', 'AUR62037141' => 'cqu', 'AUR62040522' => 'cqu', 'AUR62040523' => 'cqu', 'BcaB04g19187' => 'bca', 'BcaB04g20555' => 'bca', 'BcaB06g26287' => 'bca', 'BcaB06g26288' => 'bca', 'BcaC01g03476' => 'bca', 'BcaC05g28120' => 'bca', 'BcaC05g28122' => 'bca', 'BcaC09g49122' => 'bca', 'BcaC09g49125' => 'bca', 'BcaC09g49127' => 'bca', 'BcaC09g49129' => 'bca', 'BolC1t04190H' => 'bol', 'BolC1t04191H' => 'bol', 'BolC3t17487H' => 'bol', 'BolC5t32890H' => 'bol', 'BolC5t32893H' => 'bol', 'BraA01t03435Z' => 'bra', 'BraA03t13403Z' => 'bra', 'BraA05t21571Z' => 'bra', 'BraA05t21572Z' => 'bra', 'C01p42350' => 'bna', 'C01p42360' => 'bna', 'C03p52060' => 'bna', 'C05p41520' => 'bna', 'C05p41560' => 'bna', 'CAN.G80.19' => 'can', 'CAN.G921.6' => 'can', 'CAN.G921.8' => 'can', 'CANSAT64G0421' => 'cansat', 'CANSAT64G2761' => 'cansat', 'CARHR097810' => 'chi', 'CARHR097820' => 'chi', 'Carub.0003s2190' => 'cru', 'Carub.0003s2193' => 'cru', 'Ca_27743_v3' => 'car', 'CBR_g22069' => 'cbr', 'Cc05_g05050' => 'ccan', 'Cc05_g05140' => 'ccan', 'CDE01G0775' => 'cde', 'CDE04G1330' => 'cde', 'CDE04G3419' => 'cde', 'CDE07G1567' => 'cde', 'Cfa014439' => 'cfa', 'Cfa024134' => 'cfa', 'Ciclev10015025m.g' => 'ccl', 'Ciclev10016204m.g' => 'ccl', 'CiPaw.03G162900' => 'cil', 'CiPaw.03G163000' => 'cil', 'CiPaw.04G117900' => 'cil', 'ClCG02G001770' => 'cla', 'ClCG02G008440' => 'cla', 'ClCG02G008450' => 'cla', 'COL.COLO4_12984' => 'col', 'Cpa.g.sc8.235' => 'cpa', 'Cpa.g.sc8.236' => 'cpa', 'Cre01.g041100' => 'cre', 'Cre02.g116850' => 'cre', 'Cre06.g283150' => 'cre', 'CsaV3_2G035180' => 'csa', 'CsaV3_2G035190' => 'csa', 'CsaV3_7G003770' => 'csa', 'CSS0016042' => 'camsi', 'CSS0020073' => 'camsi', 'CSS0024189' => 'camsi', 'CSS0035637' => 'camsi', 'CSS0039018' => 'camsi', 'CSS0049956' => 'camsi', 'DCAR_002621' => 'dca', 'DCAR_012956' => 'dca', 'DCAR_012957' => 'dca', 'DCAR_012959' => 'dca', 'DCAR_019211' => 'dca', 'Dinv02385' => 'din', 'Dinv18531' => 'din', 'Dinv39686' => 'din', 'Dinv39687' => 'din', 'Duzib052G0092' => 'dzi', 'Duzib052G0734' => 'dzi', 'Duzib132G0769' => 'dzi', 'Duzib248G1135' => 'dzi', 'ECA238G0562' => 'eca', 'EL10Ac7g17313' => 'bvu', 'EL10Ac9g20654' => 'bvu', 'Eucgr.K00818' => 'egr', 'Eucgr.K00819' => 'egr', 'Eucgr.K00821' => 'egr', 'Eucgr.K00822' => 'egr', 'Eucgr.K00824' => 'egr', 'Eucgr.K00825' => 'egr', 'Eucgr.K00839' => 'egr', 'Eucgr.K00860' => 'egr', 'Eucgr.K00861' => 'egr', 'FAN02G0497' => 'fan', 'FAN05G1073' => 'fan', 'FAN09G1075' => 'fan', 'FAN09G3447' => 'fan', 'FAN14G5299' => 'fan', 'FvH4_6g43540' => 'fve', 'FvH4_6g43550' => 'fve', 'Glyma.12G195700' => 'gma', 'Glyma.12G195800' => 'gma', 'Glyma.13G037950' => 'gma', 'Glyma.13G306700' => 'gma', 'Glyma.13G306800' => 'gma', 'Gohir.A01G013300' => 'ghi', 'Gohir.A03G163600' => 'ghi', 'Gohir.A12G134800' => 'ghi', 'Gohir.D01G014600' => 'ghi', 'Gohir.D02G187000' => 'ghi', 'Gohir.D12G138400' => 'ghi', 'Gorai.002G016300' => 'gra', 'Gorai.005G209300' => 'gra', 'Gorai.008G149900' => 'gra', 'GSVIVG01008772001' => 'vvi', 'GSVIVG01030624001' => 'vvi', 'GSVIVG01030625001' => 'vvi', 'HanXRQChr02g0039391' => 'han', 'HanXRQChr10g0297471' => 'han', 'HanXRQChr10g0297501' => 'han', 'HanXRQChr15g0479201' => 'han', 'HanXRQChr17g0560941' => 'han', 'Haze_12897' => 'cav', 'Haze_12898' => 'cav', 'Hma1.2p1_0439F.1_g153260' => 'hma', 'Hma1.2p1_0613F.1_g189170' => 'hma', 'HPP92_004139' => 'vpl', 'HPP92_009055' => 'vpl', 'HPP92_009391' => 'vpl', 'HPP92_009396' => 'vpl', 'Hund01107' => 'sun', 'Hund01141' => 'sun', 'Lalb_Chr01g0005561' => 'lal', 'Lalb_Chr03g0028901' => 'lal', 'Lalb_Chr14g0375711' => 'lal', 'Lalb_Chr24g0393071' => 'lal', 'Lj1A756G86' => 'lonja', 'Lj3A852T54' => 'lonja', 'Lj3g0010899' => 'lja', 'Lj3g0012140' => 'lja', 'Lj3g0025447' => 'lja', 'Lj8A122T60' => 'lonja', 'Lj8A122T61' => 'lonja', 'Lsat_1_v5_gn_3_136420' => 'lsa', 'Lsat_1_v5_gn_3_43721' => 'lsa', 'Lsat_1_v5_gn_4_69321' => 'lsa', 'Lsat_1_v5_gn_6_102801' => 'lsa', 'Lsat_1_v5_gn_8_129400' => 'lsa', 'Manes.12G078400' => 'mes', 'Manes.13G073100' => 'mes', 'Mapoly0037s0074' => 'mpo', 'Mapoly0057s0093' => 'mpo', 'MBI01_g06556_MAGBIO' => 'mbi', 'MBI01_g08957_MAGBIO' => 'mbi', 'MBI03_g22259_MAGBIO' => 'mbi', 'MBI06_g15670_MAGBIO' => 'mbi', 'MBI18_g07895_MAGBIO' => 'mbi', 'MBI18_g10800_MAGBIO' => 'mbi', 'MBI18_g17390_MAGBIO' => 'mbi', 'MBI18_g19140_MAGBIO' => 'mbi', 'MBI18_g23508_MAGBIO' => 'mbi', 'MBI18_g41217_MAGBIO' => 'mbi', 'MBI18_g41692_MAGBIO' => 'mbi', 'MCO05G707' => 'mco', 'MCO06G294' => 'mco', 'MCO15G351' => 'mco', 'MCO16G494' => 'mco', 'MD09G1105000' => 'mdo', 'MD09G1105100' => 'mdo', 'MD17G1092700' => 'mdo', 'Medtr2g088740' => 'mtr', 'Medtr2g088820' => 'mtr', 'Medtr2g088850' => 'mtr', 'MELO3C018802.2' => 'cme', 'MELO3C019235.2' => 'cme', 'MELO3C019236.2' => 'cme', 'Migut.H01220' => 'egut', 'Migut.M00394' => 'egut', 'Migut.M00395' => 'egut', 'MSTRG.12288' => 'ama', 'MSTRG.14154' => 'ama', 'Nitab4.5_0000631g0040' => 'nta', 'Nitab4.5_0001176g0130' => 'nta', 'Nitab4.5_0001176g0150' => 'nta', 'Nitab4.5_0001176g0160' => 'nta', 'Nitab4.5_0005894g0030' => 'nta', 'Nitab4.5_0005894g0040' => 'nta', 'Nitab4.5_0006207g0030' => 'nta', 'Nn1g03668' => 'nnu', 'Nn1g06995' => 'nnu', 'Oeu011080.1' => 'oeu', 'Oeu041941.2' => 'oeu', 'Oeu041959.1' => 'oeu', 'Oeu052537.1' => 'oeu', 'Oeu052538.1' => 'oeu', 'Os04g0629000' => 'osa', 'Os04g0629100' => 'osa', 'Os04g0672800' => 'osa', 'Peaxi162Scf00007g01229' => 'pax', 'Peaxi162Scf00007g01230' => 'pax', 'PGR142G0845' => 'pgr', 'PGR142G2396' => 'pgr', 'PGSC0003DMG400026174' => 'stu', 'Phvul.005G113600' => 'pvu', 'Phvul.005G113700' => 'pvu', 'Potri.007G121600' => 'ptr', 'Potri.017G038700' => 'ptr', 'Potri.017G038800' => 'ptr', 'Pp3c13_21910' => 'ppa', 'Pp3c3_16800' => 'ppa', 'Pp3c3_16810' => 'ppa', 'PRCOL_00001357' => 'pco', 'PRCOL_00003191' => 'pco', 'Prupe.3G147600' => 'ppe', 'Prupe.3G220400' => 'ppe', 'Prupe.3G220500' => 'ppe', 'Psat0s4720g0040' => 'psa', 'Psat5g265280' => 'psa', 'Psat5g265320' => 'psa', 'Psat6g077080' => 'psa', 'Psat6g077120' => 'psa', 'PSO063G3135' => 'pso', 'PSO541G2722' => 'pso', 'PSO541G4560' => 'pso', 'PSO675G1171' => 'pso', 'QL03p043045' => 'qlo', 'QL08p033823' => 'qlo', 'QL08p033836' => 'qlo', 'RcHm_v2.0_Chr2g0160071' => 'rch', 'RcHm_v2.0_Chr2g0160081' => 'rch', 'Rhsim04G0056600' => 'rsi', 'Rhsim06G0158100' => 'rsi', 'Sabra07G0098300' => 'sbr', 'Sabra08G0110200' => 'sbr', 'Sabra11G0073000' => 'sbr', 'Sabra17G0025700' => 'sbr', 'Sabra17G0025800' => 'sbr', 'SalBow1G3276' => 'sbo', 'SalBow7G2009' => 'sbo', 'SalBow7G4184' => 'sbo', 'Sc12g0002380' => 'sci', 'Sc12g0002390' => 'sci', 'Sed0013568' => 'sed', 'Sed0014701' => 'sed', 'Sed0020603' => 'sed', 'Sed0022558' => 'sed', 'SEGI_12996' => 'sgi', 'SEGI_18250' => 'sgi', 'SEGI_18604' => 'sgi', 'SEGI_20287' => 'sgi', 'SEGI_29039' => 'sgi', 'SEGI_35415' => 'sgi', 'SGA_v2.0_scaffold49G18333' => 'sas', 'SGA_v2.0_scaffold70G23419' => 'sas', 'SGA_v2.0_scaffold70G23420' => 'sas', 'SMO167G0005' => 'smo', 'SMO347G0022' => 'smo', 'SMO356G0403' => 'smo', 'Solyc07g052570.4' => 'sly', 'Solyc07g052600.3' => 'sly', 'Solyc12g005760.2' => 'sly', 'Sopen07g026180' => 'spe', 'Sopen07g026210' => 'spe', 'Sopen12g001680' => 'spe', 'Sp3g19820' => 'spa', 'Sp3g19830' => 'spa', 'TAR624G1196' => 'tar', 'TAR627G0099' => 'tar', 'TAR629G0018' => 'tar', 'TAR629G3333' => 'tar', 'THA.LOC104802537' => 'tha', 'THA.LOC104808497' => 'tha', 'THA.LOC104821752' => 'tha', 'Thecc.02G162300' => 'tca', 'Thecc.02G162400' => 'tca', 'Thhalv10020639m.g' => 'esa', 'Thhalv10021287m.g' => 'esa', 'TPR.G4158' => 'tpr', 'TPR.G4167' => 'tpr', 'TWI18G0733' => 'twi', 'TWI18G0897' => 'twi', 'TWI75G1691' => 'twi', 'unitig_21.g20003' => 'ugi', 'unitig_26.g9659' => 'ugi', 'unitig_578.g16774' => 'ugi', 'vmacro09324' => 'vma', 'vmacro10802' => 'vma', 'vmacro12227' => 'vma', 'vmacro12228' => 'vma', 'VMungo1080G1248' => 'vmu', 'VMungo1080G1612' => 'vmu', 'Zm00001eb066610' => 'zma', 'Zm00001eb069570' => 'zma', 'Zm00001eb069580' => 'zma', 'Zm00001eb431430' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001891', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001891' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001891', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '348', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001891' ) ), 'genes' => array( 'A01p33120' => 'bna', 'A03p42500' => 'bna', 'A05p26910' => 'bna', 'A05p26920' => 'bna', 'Aa31LG8G8410' => 'aar', 'Aa31LG8G8420' => 'aar', 'Aa31LG9G2160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2694' => 'aag', 'Actinidia00164' => 'ach', 'Actinidia12501' => 'ach', 'Actinidia12502' => 'ach', 'Actinidia30510' => 'ach', 'Actinidia32078' => 'ach', 'Actinidia32079' => 'ach', 'Ah.01g003690' => 'amhyb', 'Ah.01g014600' => 'amhyb', 'Ah.15g093450' => 'amhyb', 'AL3G35970' => 'aly', 'AL3G35980' => 'aly', 'AL3G36020' => 'aly', 'AL5G18570' => 'aly', 'AL7G32320' => 'aly', 'Aqoxy4G02095' => 'aox', 'Aqoxy4G02096' => 'aox', 'Aqoxy4G02099' => 'aox', 'Aqoxy4G02100' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VZW82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62D34N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C63SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI1LQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FTMH30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3MG1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZYWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG5XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA654' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDYX4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX9XDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1IBZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TRUR1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAPR04' => 'arhy', 'AT3G21820' => 'ath', 'AT3G21865' => 'ath', 'ATR0008G001' => 'atr', 'ATR0618G228' => 'atr', 'ATR0804G013' => 'atr', 'Atru.chr6.3145' => 'acertr', 'Atru.chr6.3148' => 'acertr', 'Atru.chr6.3149' => 'acertr', 'Atru.chr8.690' => 'acertr', 'Atru.chr8.691' => 'acertr', 'AUR62025059' => 'cqu', 'AUR62037141' => 'cqu', 'AUR62040522' => 'cqu', 'AUR62040523' => 'cqu', 'BcaB04g19187' => 'bca', 'BcaB04g20555' => 'bca', 'BcaB06g26287' => 'bca', 'BcaB06g26288' => 'bca', 'BcaC01g03476' => 'bca', 'BcaC05g28120' => 'bca', 'BcaC05g28122' => 'bca', 'BcaC09g49122' => 'bca', 'BcaC09g49125' => 'bca', 'BcaC09g49127' => 'bca', 'BcaC09g49129' => 'bca', 'BolC1t04190H' => 'bol', 'BolC1t04191H' => 'bol', 'BolC3t17487H' => 'bol', 'BolC5t32890H' => 'bol', 'BolC5t32893H' => 'bol', 'BraA01t03435Z' => 'bra', 'BraA03t13403Z' => 'bra', 'BraA05t21571Z' => 'bra', 'BraA05t21572Z' => 'bra', 'C01p42350' => 'bna', 'C01p42360' => 'bna', 'C03p52060' => 'bna', 'C05p41520' => 'bna', 'C05p41560' => 'bna', 'CAN.G80.19' => 'can', 'CAN.G921.6' => 'can', 'CAN.G921.8' => 'can', 'CANSAT64G0421' => 'cansat', 'CANSAT64G2761' => 'cansat', 'CARHR097810' => 'chi', 'CARHR097820' => 'chi', 'Carub.0003s2190' => 'cru', 'Carub.0003s2193' => 'cru', 'Ca_27743_v3' => 'car', 'CBR_g22069' => 'cbr', 'Cc05_g05050' => 'ccan', 'Cc05_g05140' => 'ccan', 'CDE01G0775' => 'cde', 'CDE04G1330' => 'cde', 'CDE04G3419' => 'cde', 'CDE07G1567' => 'cde', 'Cfa014439' => 'cfa', 'Cfa024134' => 'cfa', 'Ciclev10015025m.g' => 'ccl', 'Ciclev10016204m.g' => 'ccl', 'CiPaw.03G162900' => 'cil', 'CiPaw.03G163000' => 'cil', 'CiPaw.04G117900' => 'cil', 'ClCG02G001770' => 'cla', 'ClCG02G008440' => 'cla', 'ClCG02G008450' => 'cla', 'COL.COLO4_12984' => 'col', 'Cpa.g.sc8.235' => 'cpa', 'Cpa.g.sc8.236' => 'cpa', 'Cre01.g041100' => 'cre', 'Cre02.g116850' => 'cre', 'Cre06.g283150' => 'cre', 'CsaV3_2G035180' => 'csa', 'CsaV3_2G035190' => 'csa', 'CsaV3_7G003770' => 'csa', 'CSS0016042' => 'camsi', 'CSS0020073' => 'camsi', 'CSS0024189' => 'camsi', 'CSS0035637' => 'camsi', 'CSS0039018' => 'camsi', 'CSS0049956' => 'camsi', 'DCAR_002621' => 'dca', 'DCAR_012956' => 'dca', 'DCAR_012957' => 'dca', 'DCAR_012959' => 'dca', 'DCAR_019211' => 'dca', 'Dinv02385' => 'din', 'Dinv18531' => 'din', 'Dinv39686' => 'din', 'Dinv39687' => 'din', 'Duzib052G0092' => 'dzi', 'Duzib052G0734' => 'dzi', 'Duzib132G0769' => 'dzi', 'Duzib248G1135' => 'dzi', 'ECA238G0562' => 'eca', 'EL10Ac7g17313' => 'bvu', 'EL10Ac9g20654' => 'bvu', 'Eucgr.K00818' => 'egr', 'Eucgr.K00819' => 'egr', 'Eucgr.K00821' => 'egr', 'Eucgr.K00822' => 'egr', 'Eucgr.K00824' => 'egr', 'Eucgr.K00825' => 'egr', 'Eucgr.K00839' => 'egr', 'Eucgr.K00860' => 'egr', 'Eucgr.K00861' => 'egr', 'FAN02G0497' => 'fan', 'FAN05G1073' => 'fan', 'FAN09G1075' => 'fan', 'FAN09G3447' => 'fan', 'FAN14G5299' => 'fan', 'FvH4_6g43540' => 'fve', 'FvH4_6g43550' => 'fve', 'Glyma.12G195700' => 'gma', 'Glyma.12G195800' => 'gma', 'Glyma.13G037950' => 'gma', 'Glyma.13G306700' => 'gma', 'Glyma.13G306800' => 'gma', 'Gohir.A01G013300' => 'ghi', 'Gohir.A03G163600' => 'ghi', 'Gohir.A12G134800' => 'ghi', 'Gohir.D01G014600' => 'ghi', 'Gohir.D02G187000' => 'ghi', 'Gohir.D12G138400' => 'ghi', 'Gorai.002G016300' => 'gra', 'Gorai.005G209300' => 'gra', 'Gorai.008G149900' => 'gra', 'GSVIVG01008772001' => 'vvi', 'GSVIVG01030624001' => 'vvi', 'GSVIVG01030625001' => 'vvi', 'HanXRQChr02g0039391' => 'han', 'HanXRQChr10g0297471' => 'han', 'HanXRQChr10g0297501' => 'han', 'HanXRQChr15g0479201' => 'han', 'HanXRQChr17g0560941' => 'han', 'Haze_12897' => 'cav', 'Haze_12898' => 'cav', 'Hma1.2p1_0439F.1_g153260' => 'hma', 'Hma1.2p1_0613F.1_g189170' => 'hma', 'HPP92_004139' => 'vpl', 'HPP92_009055' => 'vpl', 'HPP92_009391' => 'vpl', 'HPP92_009396' => 'vpl', 'Hund01107' => 'sun', 'Hund01141' => 'sun', 'Lalb_Chr01g0005561' => 'lal', 'Lalb_Chr03g0028901' => 'lal', 'Lalb_Chr14g0375711' => 'lal', 'Lalb_Chr24g0393071' => 'lal', 'Lj1A756G86' => 'lonja', 'Lj3A852T54' => 'lonja', 'Lj3g0010899' => 'lja', 'Lj3g0012140' => 'lja', 'Lj3g0025447' => 'lja', 'Lj8A122T60' => 'lonja', 'Lj8A122T61' => 'lonja', 'Lsat_1_v5_gn_3_136420' => 'lsa', 'Lsat_1_v5_gn_3_43721' => 'lsa', 'Lsat_1_v5_gn_4_69321' => 'lsa', 'Lsat_1_v5_gn_6_102801' => 'lsa', 'Lsat_1_v5_gn_8_129400' => 'lsa', 'Manes.12G078400' => 'mes', 'Manes.13G073100' => 'mes', 'Mapoly0037s0074' => 'mpo', 'Mapoly0057s0093' => 'mpo', 'MBI01_g06556_MAGBIO' => 'mbi', 'MBI01_g08957_MAGBIO' => 'mbi', 'MBI03_g22259_MAGBIO' => 'mbi', 'MBI06_g15670_MAGBIO' => 'mbi', 'MBI18_g07895_MAGBIO' => 'mbi', 'MBI18_g10800_MAGBIO' => 'mbi', 'MBI18_g17390_MAGBIO' => 'mbi', 'MBI18_g19140_MAGBIO' => 'mbi', 'MBI18_g23508_MAGBIO' => 'mbi', 'MBI18_g41217_MAGBIO' => 'mbi', 'MBI18_g41692_MAGBIO' => 'mbi', 'MCO05G707' => 'mco', 'MCO06G294' => 'mco', 'MCO15G351' => 'mco', 'MCO16G494' => 'mco', 'MD09G1105000' => 'mdo', 'MD09G1105100' => 'mdo', 'MD17G1092700' => 'mdo', 'Medtr2g088740' => 'mtr', 'Medtr2g088820' => 'mtr', 'Medtr2g088850' => 'mtr', 'MELO3C018802.2' => 'cme', 'MELO3C019235.2' => 'cme', 'MELO3C019236.2' => 'cme', 'Migut.H01220' => 'egut', 'Migut.M00394' => 'egut', 'Migut.M00395' => 'egut', 'MSTRG.12288' => 'ama', 'MSTRG.14154' => 'ama', 'Nitab4.5_0000631g0040' => 'nta', 'Nitab4.5_0001176g0130' => 'nta', 'Nitab4.5_0001176g0150' => 'nta', 'Nitab4.5_0001176g0160' => 'nta', 'Nitab4.5_0005894g0030' => 'nta', 'Nitab4.5_0005894g0040' => 'nta', 'Nitab4.5_0006207g0030' => 'nta', 'Nn1g03668' => 'nnu', 'Nn1g06995' => 'nnu', 'Oeu011080.1' => 'oeu', 'Oeu041941.2' => 'oeu', 'Oeu041959.1' => 'oeu', 'Oeu052537.1' => 'oeu', 'Oeu052538.1' => 'oeu', 'Os04g0629000' => 'osa', 'Os04g0629100' => 'osa', 'Os04g0672800' => 'osa', 'Peaxi162Scf00007g01229' => 'pax', 'Peaxi162Scf00007g01230' => 'pax', 'PGR142G0845' => 'pgr', 'PGR142G2396' => 'pgr', 'PGSC0003DMG400026174' => 'stu', 'Phvul.005G113600' => 'pvu', 'Phvul.005G113700' => 'pvu', 'Potri.007G121600' => 'ptr', 'Potri.017G038700' => 'ptr', 'Potri.017G038800' => 'ptr', 'Pp3c13_21910' => 'ppa', 'Pp3c3_16800' => 'ppa', 'Pp3c3_16810' => 'ppa', 'PRCOL_00001357' => 'pco', 'PRCOL_00003191' => 'pco', 'Prupe.3G147600' => 'ppe', 'Prupe.3G220400' => 'ppe', 'Prupe.3G220500' => 'ppe', 'Psat0s4720g0040' => 'psa', 'Psat5g265280' => 'psa', 'Psat5g265320' => 'psa', 'Psat6g077080' => 'psa', 'Psat6g077120' => 'psa', 'PSO063G3135' => 'pso', 'PSO541G2722' => 'pso', 'PSO541G4560' => 'pso', 'PSO675G1171' => 'pso', 'QL03p043045' => 'qlo', 'QL08p033823' => 'qlo', 'QL08p033836' => 'qlo', 'RcHm_v2.0_Chr2g0160071' => 'rch', 'RcHm_v2.0_Chr2g0160081' => 'rch', 'Rhsim04G0056600' => 'rsi', 'Rhsim06G0158100' => 'rsi', 'Sabra07G0098300' => 'sbr', 'Sabra08G0110200' => 'sbr', 'Sabra11G0073000' => 'sbr', 'Sabra17G0025700' => 'sbr', 'Sabra17G0025800' => 'sbr', 'SalBow1G3276' => 'sbo', 'SalBow7G2009' => 'sbo', 'SalBow7G4184' => 'sbo', 'Sc12g0002380' => 'sci', 'Sc12g0002390' => 'sci', 'Sed0013568' => 'sed', 'Sed0014701' => 'sed', 'Sed0020603' => 'sed', 'Sed0022558' => 'sed', 'SEGI_12996' => 'sgi', 'SEGI_18250' => 'sgi', 'SEGI_18604' => 'sgi', 'SEGI_20287' => 'sgi', 'SEGI_29039' => 'sgi', 'SEGI_35415' => 'sgi', 'SGA_v2.0_scaffold49G18333' => 'sas', 'SGA_v2.0_scaffold70G23419' => 'sas', 'SGA_v2.0_scaffold70G23420' => 'sas', 'SMO167G0005' => 'smo', 'SMO347G0022' => 'smo', 'SMO356G0403' => 'smo', 'Solyc07g052570.4' => 'sly', 'Solyc07g052600.3' => 'sly', 'Solyc12g005760.2' => 'sly', 'Sopen07g026180' => 'spe', 'Sopen07g026210' => 'spe', 'Sopen12g001680' => 'spe', 'Sp3g19820' => 'spa', 'Sp3g19830' => 'spa', 'TAR624G1196' => 'tar', 'TAR627G0099' => 'tar', 'TAR629G0018' => 'tar', 'TAR629G3333' => 'tar', 'THA.LOC104802537' => 'tha', 'THA.LOC104808497' => 'tha', 'THA.LOC104821752' => 'tha', 'Thecc.02G162300' => 'tca', 'Thecc.02G162400' => 'tca', 'Thhalv10020639m.g' => 'esa', 'Thhalv10021287m.g' => 'esa', 'TPR.G4158' => 'tpr', 'TPR.G4167' => 'tpr', 'TWI18G0733' => 'twi', 'TWI18G0897' => 'twi', 'TWI75G1691' => 'twi', 'unitig_21.g20003' => 'ugi', 'unitig_26.g9659' => 'ugi', 'unitig_578.g16774' => 'ugi', 'vmacro09324' => 'vma', 'vmacro10802' => 'vma', 'vmacro12227' => 'vma', 'vmacro12228' => 'vma', 'VMungo1080G1248' => 'vmu', 'VMungo1080G1612' => 'vmu', 'Zm00001eb066610' => 'zma', 'Zm00001eb069570' => 'zma', 'Zm00001eb069580' => 'zma', 'Zm00001eb431430' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001891' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001891' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001891' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001891' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001891', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '348', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p33120' => 'bna', 'A03p42500' => 'bna', 'A05p26910' => 'bna', 'A05p26920' => 'bna', 'Aa31LG8G8410' => 'aar', 'Aa31LG8G8420' => 'aar', 'Aa31LG9G2160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2694' => 'aag', 'Actinidia00164' => 'ach', 'Actinidia12501' => 'ach', 'Actinidia12502' => 'ach', 'Actinidia30510' => 'ach', 'Actinidia32078' => 'ach', 'Actinidia32079' => 'ach', 'Ah.01g003690' => 'amhyb', 'Ah.01g014600' => 'amhyb', 'Ah.15g093450' => 'amhyb', 'AL3G35970' => 'aly', 'AL3G35980' => 'aly', 'AL3G36020' => 'aly', 'AL5G18570' => 'aly', 'AL7G32320' => 'aly', 'Aqoxy4G02095' => 'aox', 'Aqoxy4G02096' => 'aox', 'Aqoxy4G02099' => 'aox', 'Aqoxy4G02100' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VZW82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62D34N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C63SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI1LQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FTMH30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3MG1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZYWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG5XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA654' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDYX4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX9XDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1IBZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TRUR1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAPR04' => 'arhy', 'AT3G21820' => 'ath', 'AT3G21865' => 'ath', 'ATR0008G001' => 'atr', 'ATR0618G228' => 'atr', 'ATR0804G013' => 'atr', 'Atru.chr6.3145' => 'acertr', 'Atru.chr6.3148' => 'acertr', 'Atru.chr6.3149' => 'acertr', 'Atru.chr8.690' => 'acertr', 'Atru.chr8.691' => 'acertr', 'AUR62025059' => 'cqu', 'AUR62037141' => 'cqu', 'AUR62040522' => 'cqu', 'AUR62040523' => 'cqu', 'BcaB04g19187' => 'bca', 'BcaB04g20555' => 'bca', 'BcaB06g26287' => 'bca', 'BcaB06g26288' => 'bca', 'BcaC01g03476' => 'bca', 'BcaC05g28120' => 'bca', 'BcaC05g28122' => 'bca', 'BcaC09g49122' => 'bca', 'BcaC09g49125' => 'bca', 'BcaC09g49127' => 'bca', 'BcaC09g49129' => 'bca', 'BolC1t04190H' => 'bol', 'BolC1t04191H' => 'bol', 'BolC3t17487H' => 'bol', 'BolC5t32890H' => 'bol', 'BolC5t32893H' => 'bol', 'BraA01t03435Z' => 'bra', 'BraA03t13403Z' => 'bra', 'BraA05t21571Z' => 'bra', 'BraA05t21572Z' => 'bra', 'C01p42350' => 'bna', 'C01p42360' => 'bna', 'C03p52060' => 'bna', 'C05p41520' => 'bna', 'C05p41560' => 'bna', 'CAN.G80.19' => 'can', 'CAN.G921.6' => 'can', 'CAN.G921.8' => 'can', 'CANSAT64G0421' => 'cansat', 'CANSAT64G2761' => 'cansat', 'CARHR097810' => 'chi', 'CARHR097820' => 'chi', 'Carub.0003s2190' => 'cru', 'Carub.0003s2193' => 'cru', 'Ca_27743_v3' => 'car', 'CBR_g22069' => 'cbr', 'Cc05_g05050' => 'ccan', 'Cc05_g05140' => 'ccan', 'CDE01G0775' => 'cde', 'CDE04G1330' => 'cde', 'CDE04G3419' => 'cde', 'CDE07G1567' => 'cde', 'Cfa014439' => 'cfa', 'Cfa024134' => 'cfa', 'Ciclev10015025m.g' => 'ccl', 'Ciclev10016204m.g' => 'ccl', 'CiPaw.03G162900' => 'cil', 'CiPaw.03G163000' => 'cil', 'CiPaw.04G117900' => 'cil', 'ClCG02G001770' => 'cla', 'ClCG02G008440' => 'cla', 'ClCG02G008450' => 'cla', 'COL.COLO4_12984' => 'col', 'Cpa.g.sc8.235' => 'cpa', 'Cpa.g.sc8.236' => 'cpa', 'Cre01.g041100' => 'cre', 'Cre02.g116850' => 'cre', 'Cre06.g283150' => 'cre', 'CsaV3_2G035180' => 'csa', 'CsaV3_2G035190' => 'csa', 'CsaV3_7G003770' => 'csa', 'CSS0016042' => 'camsi', 'CSS0020073' => 'camsi', 'CSS0024189' => 'camsi', 'CSS0035637' => 'camsi', 'CSS0039018' => 'camsi', 'CSS0049956' => 'camsi', 'DCAR_002621' => 'dca', 'DCAR_012956' => 'dca', 'DCAR_012957' => 'dca', 'DCAR_012959' => 'dca', 'DCAR_019211' => 'dca', 'Dinv02385' => 'din', 'Dinv18531' => 'din', 'Dinv39686' => 'din', 'Dinv39687' => 'din', 'Duzib052G0092' => 'dzi', 'Duzib052G0734' => 'dzi', 'Duzib132G0769' => 'dzi', 'Duzib248G1135' => 'dzi', 'ECA238G0562' => 'eca', 'EL10Ac7g17313' => 'bvu', 'EL10Ac9g20654' => 'bvu', 'Eucgr.K00818' => 'egr', 'Eucgr.K00819' => 'egr', 'Eucgr.K00821' => 'egr', 'Eucgr.K00822' => 'egr', 'Eucgr.K00824' => 'egr', 'Eucgr.K00825' => 'egr', 'Eucgr.K00839' => 'egr', 'Eucgr.K00860' => 'egr', 'Eucgr.K00861' => 'egr', 'FAN02G0497' => 'fan', 'FAN05G1073' => 'fan', 'FAN09G1075' => 'fan', 'FAN09G3447' => 'fan', 'FAN14G5299' => 'fan', 'FvH4_6g43540' => 'fve', 'FvH4_6g43550' => 'fve', 'Glyma.12G195700' => 'gma', 'Glyma.12G195800' => 'gma', 'Glyma.13G037950' => 'gma', 'Glyma.13G306700' => 'gma', 'Glyma.13G306800' => 'gma', 'Gohir.A01G013300' => 'ghi', 'Gohir.A03G163600' => 'ghi', 'Gohir.A12G134800' => 'ghi', 'Gohir.D01G014600' => 'ghi', 'Gohir.D02G187000' => 'ghi', 'Gohir.D12G138400' => 'ghi', 'Gorai.002G016300' => 'gra', 'Gorai.005G209300' => 'gra', 'Gorai.008G149900' => 'gra', 'GSVIVG01008772001' => 'vvi', 'GSVIVG01030624001' => 'vvi', 'GSVIVG01030625001' => 'vvi', 'HanXRQChr02g0039391' => 'han', 'HanXRQChr10g0297471' => 'han', 'HanXRQChr10g0297501' => 'han', 'HanXRQChr15g0479201' => 'han', 'HanXRQChr17g0560941' => 'han', 'Haze_12897' => 'cav', 'Haze_12898' => 'cav', 'Hma1.2p1_0439F.1_g153260' => 'hma', 'Hma1.2p1_0613F.1_g189170' => 'hma', 'HPP92_004139' => 'vpl', 'HPP92_009055' => 'vpl', 'HPP92_009391' => 'vpl', 'HPP92_009396' => 'vpl', 'Hund01107' => 'sun', 'Hund01141' => 'sun', 'Lalb_Chr01g0005561' => 'lal', 'Lalb_Chr03g0028901' => 'lal', 'Lalb_Chr14g0375711' => 'lal', 'Lalb_Chr24g0393071' => 'lal', 'Lj1A756G86' => 'lonja', 'Lj3A852T54' => 'lonja', 'Lj3g0010899' => 'lja', 'Lj3g0012140' => 'lja', 'Lj3g0025447' => 'lja', 'Lj8A122T60' => 'lonja', 'Lj8A122T61' => 'lonja', 'Lsat_1_v5_gn_3_136420' => 'lsa', 'Lsat_1_v5_gn_3_43721' => 'lsa', 'Lsat_1_v5_gn_4_69321' => 'lsa', 'Lsat_1_v5_gn_6_102801' => 'lsa', 'Lsat_1_v5_gn_8_129400' => 'lsa', 'Manes.12G078400' => 'mes', 'Manes.13G073100' => 'mes', 'Mapoly0037s0074' => 'mpo', 'Mapoly0057s0093' => 'mpo', 'MBI01_g06556_MAGBIO' => 'mbi', 'MBI01_g08957_MAGBIO' => 'mbi', 'MBI03_g22259_MAGBIO' => 'mbi', 'MBI06_g15670_MAGBIO' => 'mbi', 'MBI18_g07895_MAGBIO' => 'mbi', 'MBI18_g10800_MAGBIO' => 'mbi', 'MBI18_g17390_MAGBIO' => 'mbi', 'MBI18_g19140_MAGBIO' => 'mbi', 'MBI18_g23508_MAGBIO' => 'mbi', 'MBI18_g41217_MAGBIO' => 'mbi', 'MBI18_g41692_MAGBIO' => 'mbi', 'MCO05G707' => 'mco', 'MCO06G294' => 'mco', 'MCO15G351' => 'mco', 'MCO16G494' => 'mco', 'MD09G1105000' => 'mdo', 'MD09G1105100' => 'mdo', 'MD17G1092700' => 'mdo', 'Medtr2g088740' => 'mtr', 'Medtr2g088820' => 'mtr', 'Medtr2g088850' => 'mtr', 'MELO3C018802.2' => 'cme', 'MELO3C019235.2' => 'cme', 'MELO3C019236.2' => 'cme', 'Migut.H01220' => 'egut', 'Migut.M00394' => 'egut', 'Migut.M00395' => 'egut', 'MSTRG.12288' => 'ama', 'MSTRG.14154' => 'ama', 'Nitab4.5_0000631g0040' => 'nta', 'Nitab4.5_0001176g0130' => 'nta', 'Nitab4.5_0001176g0150' => 'nta', 'Nitab4.5_0001176g0160' => 'nta', 'Nitab4.5_0005894g0030' => 'nta', 'Nitab4.5_0005894g0040' => 'nta', 'Nitab4.5_0006207g0030' => 'nta', 'Nn1g03668' => 'nnu', 'Nn1g06995' => 'nnu', 'Oeu011080.1' => 'oeu', 'Oeu041941.2' => 'oeu', 'Oeu041959.1' => 'oeu', 'Oeu052537.1' => 'oeu', 'Oeu052538.1' => 'oeu', 'Os04g0629000' => 'osa', 'Os04g0629100' => 'osa', 'Os04g0672800' => 'osa', 'Peaxi162Scf00007g01229' => 'pax', 'Peaxi162Scf00007g01230' => 'pax', 'PGR142G0845' => 'pgr', 'PGR142G2396' => 'pgr', 'PGSC0003DMG400026174' => 'stu', 'Phvul.005G113600' => 'pvu', 'Phvul.005G113700' => 'pvu', 'Potri.007G121600' => 'ptr', 'Potri.017G038700' => 'ptr', 'Potri.017G038800' => 'ptr', 'Pp3c13_21910' => 'ppa', 'Pp3c3_16800' => 'ppa', 'Pp3c3_16810' => 'ppa', 'PRCOL_00001357' => 'pco', 'PRCOL_00003191' => 'pco', 'Prupe.3G147600' => 'ppe', 'Prupe.3G220400' => 'ppe', 'Prupe.3G220500' => 'ppe', 'Psat0s4720g0040' => 'psa', 'Psat5g265280' => 'psa', 'Psat5g265320' => 'psa', 'Psat6g077080' => 'psa', 'Psat6g077120' => 'psa', 'PSO063G3135' => 'pso', 'PSO541G2722' => 'pso', 'PSO541G4560' => 'pso', 'PSO675G1171' => 'pso', 'QL03p043045' => 'qlo', 'QL08p033823' => 'qlo', 'QL08p033836' => 'qlo', 'RcHm_v2.0_Chr2g0160071' => 'rch', 'RcHm_v2.0_Chr2g0160081' => 'rch', 'Rhsim04G0056600' => 'rsi', 'Rhsim06G0158100' => 'rsi', 'Sabra07G0098300' => 'sbr', 'Sabra08G0110200' => 'sbr', 'Sabra11G0073000' => 'sbr', 'Sabra17G0025700' => 'sbr', 'Sabra17G0025800' => 'sbr', 'SalBow1G3276' => 'sbo', 'SalBow7G2009' => 'sbo', 'SalBow7G4184' => 'sbo', 'Sc12g0002380' => 'sci', 'Sc12g0002390' => 'sci', 'Sed0013568' => 'sed', 'Sed0014701' => 'sed', 'Sed0020603' => 'sed', 'Sed0022558' => 'sed', 'SEGI_12996' => 'sgi', 'SEGI_18250' => 'sgi', 'SEGI_18604' => 'sgi', 'SEGI_20287' => 'sgi', 'SEGI_29039' => 'sgi', 'SEGI_35415' => 'sgi', 'SGA_v2.0_scaffold49G18333' => 'sas', 'SGA_v2.0_scaffold70G23419' => 'sas', 'SGA_v2.0_scaffold70G23420' => 'sas', 'SMO167G0005' => 'smo', 'SMO347G0022' => 'smo', 'SMO356G0403' => 'smo', 'Solyc07g052570.4' => 'sly', 'Solyc07g052600.3' => 'sly', 'Solyc12g005760.2' => 'sly', 'Sopen07g026180' => 'spe', 'Sopen07g026210' => 'spe', 'Sopen12g001680' => 'spe', 'Sp3g19820' => 'spa', 'Sp3g19830' => 'spa', 'TAR624G1196' => 'tar', 'TAR627G0099' => 'tar', 'TAR629G0018' => 'tar', 'TAR629G3333' => 'tar', 'THA.LOC104802537' => 'tha', 'THA.LOC104808497' => 'tha', 'THA.LOC104821752' => 'tha', 'Thecc.02G162300' => 'tca', 'Thecc.02G162400' => 'tca', 'Thhalv10020639m.g' => 'esa', 'Thhalv10021287m.g' => 'esa', 'TPR.G4158' => 'tpr', 'TPR.G4167' => 'tpr', 'TWI18G0733' => 'twi', 'TWI18G0897' => 'twi', 'TWI75G1691' => 'twi', 'unitig_21.g20003' => 'ugi', 'unitig_26.g9659' => 'ugi', 'unitig_578.g16774' => 'ugi', 'vmacro09324' => 'vma', 'vmacro10802' => 'vma', 'vmacro12227' => 'vma', 'vmacro12228' => 'vma', 'VMungo1080G1248' => 'vmu', 'VMungo1080G1612' => 'vmu', 'Zm00001eb066610' => 'zma', 'Zm00001eb069570' => 'zma', 'Zm00001eb069580' => 'zma', 'Zm00001eb431430' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001891', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001891' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001891', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '348', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001891' ) ), 'genes' => array( 'A01p33120' => 'bna', 'A03p42500' => 'bna', 'A05p26910' => 'bna', 'A05p26920' => 'bna', 'Aa31LG8G8410' => 'aar', 'Aa31LG8G8420' => 'aar', 'Aa31LG9G2160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2694' => 'aag', 'Actinidia00164' => 'ach', 'Actinidia12501' => 'ach', 'Actinidia12502' => 'ach', 'Actinidia30510' => 'ach', 'Actinidia32078' => 'ach', 'Actinidia32079' => 'ach', 'Ah.01g003690' => 'amhyb', 'Ah.01g014600' => 'amhyb', 'Ah.15g093450' => 'amhyb', 'AL3G35970' => 'aly', 'AL3G35980' => 'aly', 'AL3G36020' => 'aly', 'AL5G18570' => 'aly', 'AL7G32320' => 'aly', 'Aqoxy4G02095' => 'aox', 'Aqoxy4G02096' => 'aox', 'Aqoxy4G02099' => 'aox', 'Aqoxy4G02100' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VZW82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62D34N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C63SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI1LQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FTMH30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3MG1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZYWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG5XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA654' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDYX4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX9XDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1IBZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TRUR1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAPR04' => 'arhy', 'AT3G21820' => 'ath', 'AT3G21865' => 'ath', 'ATR0008G001' => 'atr', 'ATR0618G228' => 'atr', 'ATR0804G013' => 'atr', 'Atru.chr6.3145' => 'acertr', 'Atru.chr6.3148' => 'acertr', 'Atru.chr6.3149' => 'acertr', 'Atru.chr8.690' => 'acertr', 'Atru.chr8.691' => 'acertr', 'AUR62025059' => 'cqu', 'AUR62037141' => 'cqu', 'AUR62040522' => 'cqu', 'AUR62040523' => 'cqu', 'BcaB04g19187' => 'bca', 'BcaB04g20555' => 'bca', 'BcaB06g26287' => 'bca', 'BcaB06g26288' => 'bca', 'BcaC01g03476' => 'bca', 'BcaC05g28120' => 'bca', 'BcaC05g28122' => 'bca', 'BcaC09g49122' => 'bca', 'BcaC09g49125' => 'bca', 'BcaC09g49127' => 'bca', 'BcaC09g49129' => 'bca', 'BolC1t04190H' => 'bol', 'BolC1t04191H' => 'bol', 'BolC3t17487H' => 'bol', 'BolC5t32890H' => 'bol', 'BolC5t32893H' => 'bol', 'BraA01t03435Z' => 'bra', 'BraA03t13403Z' => 'bra', 'BraA05t21571Z' => 'bra', 'BraA05t21572Z' => 'bra', 'C01p42350' => 'bna', 'C01p42360' => 'bna', 'C03p52060' => 'bna', 'C05p41520' => 'bna', 'C05p41560' => 'bna', 'CAN.G80.19' => 'can', 'CAN.G921.6' => 'can', 'CAN.G921.8' => 'can', 'CANSAT64G0421' => 'cansat', 'CANSAT64G2761' => 'cansat', 'CARHR097810' => 'chi', 'CARHR097820' => 'chi', 'Carub.0003s2190' => 'cru', 'Carub.0003s2193' => 'cru', 'Ca_27743_v3' => 'car', 'CBR_g22069' => 'cbr', 'Cc05_g05050' => 'ccan', 'Cc05_g05140' => 'ccan', 'CDE01G0775' => 'cde', 'CDE04G1330' => 'cde', 'CDE04G3419' => 'cde', 'CDE07G1567' => 'cde', 'Cfa014439' => 'cfa', 'Cfa024134' => 'cfa', 'Ciclev10015025m.g' => 'ccl', 'Ciclev10016204m.g' => 'ccl', 'CiPaw.03G162900' => 'cil', 'CiPaw.03G163000' => 'cil', 'CiPaw.04G117900' => 'cil', 'ClCG02G001770' => 'cla', 'ClCG02G008440' => 'cla', 'ClCG02G008450' => 'cla', 'COL.COLO4_12984' => 'col', 'Cpa.g.sc8.235' => 'cpa', 'Cpa.g.sc8.236' => 'cpa', 'Cre01.g041100' => 'cre', 'Cre02.g116850' => 'cre', 'Cre06.g283150' => 'cre', 'CsaV3_2G035180' => 'csa', 'CsaV3_2G035190' => 'csa', 'CsaV3_7G003770' => 'csa', 'CSS0016042' => 'camsi', 'CSS0020073' => 'camsi', 'CSS0024189' => 'camsi', 'CSS0035637' => 'camsi', 'CSS0039018' => 'camsi', 'CSS0049956' => 'camsi', 'DCAR_002621' => 'dca', 'DCAR_012956' => 'dca', 'DCAR_012957' => 'dca', 'DCAR_012959' => 'dca', 'DCAR_019211' => 'dca', 'Dinv02385' => 'din', 'Dinv18531' => 'din', 'Dinv39686' => 'din', 'Dinv39687' => 'din', 'Duzib052G0092' => 'dzi', 'Duzib052G0734' => 'dzi', 'Duzib132G0769' => 'dzi', 'Duzib248G1135' => 'dzi', 'ECA238G0562' => 'eca', 'EL10Ac7g17313' => 'bvu', 'EL10Ac9g20654' => 'bvu', 'Eucgr.K00818' => 'egr', 'Eucgr.K00819' => 'egr', 'Eucgr.K00821' => 'egr', 'Eucgr.K00822' => 'egr', 'Eucgr.K00824' => 'egr', 'Eucgr.K00825' => 'egr', 'Eucgr.K00839' => 'egr', 'Eucgr.K00860' => 'egr', 'Eucgr.K00861' => 'egr', 'FAN02G0497' => 'fan', 'FAN05G1073' => 'fan', 'FAN09G1075' => 'fan', 'FAN09G3447' => 'fan', 'FAN14G5299' => 'fan', 'FvH4_6g43540' => 'fve', 'FvH4_6g43550' => 'fve', 'Glyma.12G195700' => 'gma', 'Glyma.12G195800' => 'gma', 'Glyma.13G037950' => 'gma', 'Glyma.13G306700' => 'gma', 'Glyma.13G306800' => 'gma', 'Gohir.A01G013300' => 'ghi', 'Gohir.A03G163600' => 'ghi', 'Gohir.A12G134800' => 'ghi', 'Gohir.D01G014600' => 'ghi', 'Gohir.D02G187000' => 'ghi', 'Gohir.D12G138400' => 'ghi', 'Gorai.002G016300' => 'gra', 'Gorai.005G209300' => 'gra', 'Gorai.008G149900' => 'gra', 'GSVIVG01008772001' => 'vvi', 'GSVIVG01030624001' => 'vvi', 'GSVIVG01030625001' => 'vvi', 'HanXRQChr02g0039391' => 'han', 'HanXRQChr10g0297471' => 'han', 'HanXRQChr10g0297501' => 'han', 'HanXRQChr15g0479201' => 'han', 'HanXRQChr17g0560941' => 'han', 'Haze_12897' => 'cav', 'Haze_12898' => 'cav', 'Hma1.2p1_0439F.1_g153260' => 'hma', 'Hma1.2p1_0613F.1_g189170' => 'hma', 'HPP92_004139' => 'vpl', 'HPP92_009055' => 'vpl', 'HPP92_009391' => 'vpl', 'HPP92_009396' => 'vpl', 'Hund01107' => 'sun', 'Hund01141' => 'sun', 'Lalb_Chr01g0005561' => 'lal', 'Lalb_Chr03g0028901' => 'lal', 'Lalb_Chr14g0375711' => 'lal', 'Lalb_Chr24g0393071' => 'lal', 'Lj1A756G86' => 'lonja', 'Lj3A852T54' => 'lonja', 'Lj3g0010899' => 'lja', 'Lj3g0012140' => 'lja', 'Lj3g0025447' => 'lja', 'Lj8A122T60' => 'lonja', 'Lj8A122T61' => 'lonja', 'Lsat_1_v5_gn_3_136420' => 'lsa', 'Lsat_1_v5_gn_3_43721' => 'lsa', 'Lsat_1_v5_gn_4_69321' => 'lsa', 'Lsat_1_v5_gn_6_102801' => 'lsa', 'Lsat_1_v5_gn_8_129400' => 'lsa', 'Manes.12G078400' => 'mes', 'Manes.13G073100' => 'mes', 'Mapoly0037s0074' => 'mpo', 'Mapoly0057s0093' => 'mpo', 'MBI01_g06556_MAGBIO' => 'mbi', 'MBI01_g08957_MAGBIO' => 'mbi', 'MBI03_g22259_MAGBIO' => 'mbi', 'MBI06_g15670_MAGBIO' => 'mbi', 'MBI18_g07895_MAGBIO' => 'mbi', 'MBI18_g10800_MAGBIO' => 'mbi', 'MBI18_g17390_MAGBIO' => 'mbi', 'MBI18_g19140_MAGBIO' => 'mbi', 'MBI18_g23508_MAGBIO' => 'mbi', 'MBI18_g41217_MAGBIO' => 'mbi', 'MBI18_g41692_MAGBIO' => 'mbi', 'MCO05G707' => 'mco', 'MCO06G294' => 'mco', 'MCO15G351' => 'mco', 'MCO16G494' => 'mco', 'MD09G1105000' => 'mdo', 'MD09G1105100' => 'mdo', 'MD17G1092700' => 'mdo', 'Medtr2g088740' => 'mtr', 'Medtr2g088820' => 'mtr', 'Medtr2g088850' => 'mtr', 'MELO3C018802.2' => 'cme', 'MELO3C019235.2' => 'cme', 'MELO3C019236.2' => 'cme', 'Migut.H01220' => 'egut', 'Migut.M00394' => 'egut', 'Migut.M00395' => 'egut', 'MSTRG.12288' => 'ama', 'MSTRG.14154' => 'ama', 'Nitab4.5_0000631g0040' => 'nta', 'Nitab4.5_0001176g0130' => 'nta', 'Nitab4.5_0001176g0150' => 'nta', 'Nitab4.5_0001176g0160' => 'nta', 'Nitab4.5_0005894g0030' => 'nta', 'Nitab4.5_0005894g0040' => 'nta', 'Nitab4.5_0006207g0030' => 'nta', 'Nn1g03668' => 'nnu', 'Nn1g06995' => 'nnu', 'Oeu011080.1' => 'oeu', 'Oeu041941.2' => 'oeu', 'Oeu041959.1' => 'oeu', 'Oeu052537.1' => 'oeu', 'Oeu052538.1' => 'oeu', 'Os04g0629000' => 'osa', 'Os04g0629100' => 'osa', 'Os04g0672800' => 'osa', 'Peaxi162Scf00007g01229' => 'pax', 'Peaxi162Scf00007g01230' => 'pax', 'PGR142G0845' => 'pgr', 'PGR142G2396' => 'pgr', 'PGSC0003DMG400026174' => 'stu', 'Phvul.005G113600' => 'pvu', 'Phvul.005G113700' => 'pvu', 'Potri.007G121600' => 'ptr', 'Potri.017G038700' => 'ptr', 'Potri.017G038800' => 'ptr', 'Pp3c13_21910' => 'ppa', 'Pp3c3_16800' => 'ppa', 'Pp3c3_16810' => 'ppa', 'PRCOL_00001357' => 'pco', 'PRCOL_00003191' => 'pco', 'Prupe.3G147600' => 'ppe', 'Prupe.3G220400' => 'ppe', 'Prupe.3G220500' => 'ppe', 'Psat0s4720g0040' => 'psa', 'Psat5g265280' => 'psa', 'Psat5g265320' => 'psa', 'Psat6g077080' => 'psa', 'Psat6g077120' => 'psa', 'PSO063G3135' => 'pso', 'PSO541G2722' => 'pso', 'PSO541G4560' => 'pso', 'PSO675G1171' => 'pso', 'QL03p043045' => 'qlo', 'QL08p033823' => 'qlo', 'QL08p033836' => 'qlo', 'RcHm_v2.0_Chr2g0160071' => 'rch', 'RcHm_v2.0_Chr2g0160081' => 'rch', 'Rhsim04G0056600' => 'rsi', 'Rhsim06G0158100' => 'rsi', 'Sabra07G0098300' => 'sbr', 'Sabra08G0110200' => 'sbr', 'Sabra11G0073000' => 'sbr', 'Sabra17G0025700' => 'sbr', 'Sabra17G0025800' => 'sbr', 'SalBow1G3276' => 'sbo', 'SalBow7G2009' => 'sbo', 'SalBow7G4184' => 'sbo', 'Sc12g0002380' => 'sci', 'Sc12g0002390' => 'sci', 'Sed0013568' => 'sed', 'Sed0014701' => 'sed', 'Sed0020603' => 'sed', 'Sed0022558' => 'sed', 'SEGI_12996' => 'sgi', 'SEGI_18250' => 'sgi', 'SEGI_18604' => 'sgi', 'SEGI_20287' => 'sgi', 'SEGI_29039' => 'sgi', 'SEGI_35415' => 'sgi', 'SGA_v2.0_scaffold49G18333' => 'sas', 'SGA_v2.0_scaffold70G23419' => 'sas', 'SGA_v2.0_scaffold70G23420' => 'sas', 'SMO167G0005' => 'smo', 'SMO347G0022' => 'smo', 'SMO356G0403' => 'smo', 'Solyc07g052570.4' => 'sly', 'Solyc07g052600.3' => 'sly', 'Solyc12g005760.2' => 'sly', 'Sopen07g026180' => 'spe', 'Sopen07g026210' => 'spe', 'Sopen12g001680' => 'spe', 'Sp3g19820' => 'spa', 'Sp3g19830' => 'spa', 'TAR624G1196' => 'tar', 'TAR627G0099' => 'tar', 'TAR629G0018' => 'tar', 'TAR629G3333' => 'tar', 'THA.LOC104802537' => 'tha', 'THA.LOC104808497' => 'tha', 'THA.LOC104821752' => 'tha', 'Thecc.02G162300' => 'tca', 'Thecc.02G162400' => 'tca', 'Thhalv10020639m.g' => 'esa', 'Thhalv10021287m.g' => 'esa', 'TPR.G4158' => 'tpr', 'TPR.G4167' => 'tpr', 'TWI18G0733' => 'twi', 'TWI18G0897' => 'twi', 'TWI75G1691' => 'twi', 'unitig_21.g20003' => 'ugi', 'unitig_26.g9659' => 'ugi', 'unitig_578.g16774' => 'ugi', 'vmacro09324' => 'vma', 'vmacro10802' => 'vma', 'vmacro12227' => 'vma', 'vmacro12228' => 'vma', 'VMungo1080G1248' => 'vmu', 'VMungo1080G1612' => 'vmu', 'Zm00001eb066610' => 'zma', 'Zm00001eb069570' => 'zma', 'Zm00001eb069580' => 'zma', 'Zm00001eb431430' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001891' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001891' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001891' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001891' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001891', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '348', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p33120' => 'bna', 'A03p42500' => 'bna', 'A05p26910' => 'bna', 'A05p26920' => 'bna', 'Aa31LG8G8410' => 'aar', 'Aa31LG8G8420' => 'aar', 'Aa31LG9G2160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2694' => 'aag', 'Actinidia00164' => 'ach', 'Actinidia12501' => 'ach', 'Actinidia12502' => 'ach', 'Actinidia30510' => 'ach', 'Actinidia32078' => 'ach', 'Actinidia32079' => 'ach', 'Ah.01g003690' => 'amhyb', 'Ah.01g014600' => 'amhyb', 'Ah.15g093450' => 'amhyb', 'AL3G35970' => 'aly', 'AL3G35980' => 'aly', 'AL3G36020' => 'aly', 'AL5G18570' => 'aly', 'AL7G32320' => 'aly', 'Aqoxy4G02095' => 'aox', 'Aqoxy4G02096' => 'aox', 'Aqoxy4G02099' => 'aox', 'Aqoxy4G02100' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VZW82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62D34N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C63SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI1LQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FTMH30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3MG1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZYWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG5XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA654' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDYX4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX9XDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1IBZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TRUR1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAPR04' => 'arhy', 'AT3G21820' => 'ath', 'AT3G21865' => 'ath', 'ATR0008G001' => 'atr', 'ATR0618G228' => 'atr', 'ATR0804G013' => 'atr', 'Atru.chr6.3145' => 'acertr', 'Atru.chr6.3148' => 'acertr', 'Atru.chr6.3149' => 'acertr', 'Atru.chr8.690' => 'acertr', 'Atru.chr8.691' => 'acertr', 'AUR62025059' => 'cqu', 'AUR62037141' => 'cqu', 'AUR62040522' => 'cqu', 'AUR62040523' => 'cqu', 'BcaB04g19187' => 'bca', 'BcaB04g20555' => 'bca', 'BcaB06g26287' => 'bca', 'BcaB06g26288' => 'bca', 'BcaC01g03476' => 'bca', 'BcaC05g28120' => 'bca', 'BcaC05g28122' => 'bca', 'BcaC09g49122' => 'bca', 'BcaC09g49125' => 'bca', 'BcaC09g49127' => 'bca', 'BcaC09g49129' => 'bca', 'BolC1t04190H' => 'bol', 'BolC1t04191H' => 'bol', 'BolC3t17487H' => 'bol', 'BolC5t32890H' => 'bol', 'BolC5t32893H' => 'bol', 'BraA01t03435Z' => 'bra', 'BraA03t13403Z' => 'bra', 'BraA05t21571Z' => 'bra', 'BraA05t21572Z' => 'bra', 'C01p42350' => 'bna', 'C01p42360' => 'bna', 'C03p52060' => 'bna', 'C05p41520' => 'bna', 'C05p41560' => 'bna', 'CAN.G80.19' => 'can', 'CAN.G921.6' => 'can', 'CAN.G921.8' => 'can', 'CANSAT64G0421' => 'cansat', 'CANSAT64G2761' => 'cansat', 'CARHR097810' => 'chi', 'CARHR097820' => 'chi', 'Carub.0003s2190' => 'cru', 'Carub.0003s2193' => 'cru', 'Ca_27743_v3' => 'car', 'CBR_g22069' => 'cbr', 'Cc05_g05050' => 'ccan', 'Cc05_g05140' => 'ccan', 'CDE01G0775' => 'cde', 'CDE04G1330' => 'cde', 'CDE04G3419' => 'cde', 'CDE07G1567' => 'cde', 'Cfa014439' => 'cfa', 'Cfa024134' => 'cfa', 'Ciclev10015025m.g' => 'ccl', 'Ciclev10016204m.g' => 'ccl', 'CiPaw.03G162900' => 'cil', 'CiPaw.03G163000' => 'cil', 'CiPaw.04G117900' => 'cil', 'ClCG02G001770' => 'cla', 'ClCG02G008440' => 'cla', 'ClCG02G008450' => 'cla', 'COL.COLO4_12984' => 'col', 'Cpa.g.sc8.235' => 'cpa', 'Cpa.g.sc8.236' => 'cpa', 'Cre01.g041100' => 'cre', 'Cre02.g116850' => 'cre', 'Cre06.g283150' => 'cre', 'CsaV3_2G035180' => 'csa', 'CsaV3_2G035190' => 'csa', 'CsaV3_7G003770' => 'csa', 'CSS0016042' => 'camsi', 'CSS0020073' => 'camsi', 'CSS0024189' => 'camsi', 'CSS0035637' => 'camsi', 'CSS0039018' => 'camsi', 'CSS0049956' => 'camsi', 'DCAR_002621' => 'dca', 'DCAR_012956' => 'dca', 'DCAR_012957' => 'dca', 'DCAR_012959' => 'dca', 'DCAR_019211' => 'dca', 'Dinv02385' => 'din', 'Dinv18531' => 'din', 'Dinv39686' => 'din', 'Dinv39687' => 'din', 'Duzib052G0092' => 'dzi', 'Duzib052G0734' => 'dzi', 'Duzib132G0769' => 'dzi', 'Duzib248G1135' => 'dzi', 'ECA238G0562' => 'eca', 'EL10Ac7g17313' => 'bvu', 'EL10Ac9g20654' => 'bvu', 'Eucgr.K00818' => 'egr', 'Eucgr.K00819' => 'egr', 'Eucgr.K00821' => 'egr', 'Eucgr.K00822' => 'egr', 'Eucgr.K00824' => 'egr', 'Eucgr.K00825' => 'egr', 'Eucgr.K00839' => 'egr', 'Eucgr.K00860' => 'egr', 'Eucgr.K00861' => 'egr', 'FAN02G0497' => 'fan', 'FAN05G1073' => 'fan', 'FAN09G1075' => 'fan', 'FAN09G3447' => 'fan', 'FAN14G5299' => 'fan', 'FvH4_6g43540' => 'fve', 'FvH4_6g43550' => 'fve', 'Glyma.12G195700' => 'gma', 'Glyma.12G195800' => 'gma', 'Glyma.13G037950' => 'gma', 'Glyma.13G306700' => 'gma', 'Glyma.13G306800' => 'gma', 'Gohir.A01G013300' => 'ghi', 'Gohir.A03G163600' => 'ghi', 'Gohir.A12G134800' => 'ghi', 'Gohir.D01G014600' => 'ghi', 'Gohir.D02G187000' => 'ghi', 'Gohir.D12G138400' => 'ghi', 'Gorai.002G016300' => 'gra', 'Gorai.005G209300' => 'gra', 'Gorai.008G149900' => 'gra', 'GSVIVG01008772001' => 'vvi', 'GSVIVG01030624001' => 'vvi', 'GSVIVG01030625001' => 'vvi', 'HanXRQChr02g0039391' => 'han', 'HanXRQChr10g0297471' => 'han', 'HanXRQChr10g0297501' => 'han', 'HanXRQChr15g0479201' => 'han', 'HanXRQChr17g0560941' => 'han', 'Haze_12897' => 'cav', 'Haze_12898' => 'cav', 'Hma1.2p1_0439F.1_g153260' => 'hma', 'Hma1.2p1_0613F.1_g189170' => 'hma', 'HPP92_004139' => 'vpl', 'HPP92_009055' => 'vpl', 'HPP92_009391' => 'vpl', 'HPP92_009396' => 'vpl', 'Hund01107' => 'sun', 'Hund01141' => 'sun', 'Lalb_Chr01g0005561' => 'lal', 'Lalb_Chr03g0028901' => 'lal', 'Lalb_Chr14g0375711' => 'lal', 'Lalb_Chr24g0393071' => 'lal', 'Lj1A756G86' => 'lonja', 'Lj3A852T54' => 'lonja', 'Lj3g0010899' => 'lja', 'Lj3g0012140' => 'lja', 'Lj3g0025447' => 'lja', 'Lj8A122T60' => 'lonja', 'Lj8A122T61' => 'lonja', 'Lsat_1_v5_gn_3_136420' => 'lsa', 'Lsat_1_v5_gn_3_43721' => 'lsa', 'Lsat_1_v5_gn_4_69321' => 'lsa', 'Lsat_1_v5_gn_6_102801' => 'lsa', 'Lsat_1_v5_gn_8_129400' => 'lsa', 'Manes.12G078400' => 'mes', 'Manes.13G073100' => 'mes', 'Mapoly0037s0074' => 'mpo', 'Mapoly0057s0093' => 'mpo', 'MBI01_g06556_MAGBIO' => 'mbi', 'MBI01_g08957_MAGBIO' => 'mbi', 'MBI03_g22259_MAGBIO' => 'mbi', 'MBI06_g15670_MAGBIO' => 'mbi', 'MBI18_g07895_MAGBIO' => 'mbi', 'MBI18_g10800_MAGBIO' => 'mbi', 'MBI18_g17390_MAGBIO' => 'mbi', 'MBI18_g19140_MAGBIO' => 'mbi', 'MBI18_g23508_MAGBIO' => 'mbi', 'MBI18_g41217_MAGBIO' => 'mbi', 'MBI18_g41692_MAGBIO' => 'mbi', 'MCO05G707' => 'mco', 'MCO06G294' => 'mco', 'MCO15G351' => 'mco', 'MCO16G494' => 'mco', 'MD09G1105000' => 'mdo', 'MD09G1105100' => 'mdo', 'MD17G1092700' => 'mdo', 'Medtr2g088740' => 'mtr', 'Medtr2g088820' => 'mtr', 'Medtr2g088850' => 'mtr', 'MELO3C018802.2' => 'cme', 'MELO3C019235.2' => 'cme', 'MELO3C019236.2' => 'cme', 'Migut.H01220' => 'egut', 'Migut.M00394' => 'egut', 'Migut.M00395' => 'egut', 'MSTRG.12288' => 'ama', 'MSTRG.14154' => 'ama', 'Nitab4.5_0000631g0040' => 'nta', 'Nitab4.5_0001176g0130' => 'nta', 'Nitab4.5_0001176g0150' => 'nta', 'Nitab4.5_0001176g0160' => 'nta', 'Nitab4.5_0005894g0030' => 'nta', 'Nitab4.5_0005894g0040' => 'nta', 'Nitab4.5_0006207g0030' => 'nta', 'Nn1g03668' => 'nnu', 'Nn1g06995' => 'nnu', 'Oeu011080.1' => 'oeu', 'Oeu041941.2' => 'oeu', 'Oeu041959.1' => 'oeu', 'Oeu052537.1' => 'oeu', 'Oeu052538.1' => 'oeu', 'Os04g0629000' => 'osa', 'Os04g0629100' => 'osa', 'Os04g0672800' => 'osa', 'Peaxi162Scf00007g01229' => 'pax', 'Peaxi162Scf00007g01230' => 'pax', 'PGR142G0845' => 'pgr', 'PGR142G2396' => 'pgr', 'PGSC0003DMG400026174' => 'stu', 'Phvul.005G113600' => 'pvu', 'Phvul.005G113700' => 'pvu', 'Potri.007G121600' => 'ptr', 'Potri.017G038700' => 'ptr', 'Potri.017G038800' => 'ptr', 'Pp3c13_21910' => 'ppa', 'Pp3c3_16800' => 'ppa', 'Pp3c3_16810' => 'ppa', 'PRCOL_00001357' => 'pco', 'PRCOL_00003191' => 'pco', 'Prupe.3G147600' => 'ppe', 'Prupe.3G220400' => 'ppe', 'Prupe.3G220500' => 'ppe', 'Psat0s4720g0040' => 'psa', 'Psat5g265280' => 'psa', 'Psat5g265320' => 'psa', 'Psat6g077080' => 'psa', 'Psat6g077120' => 'psa', 'PSO063G3135' => 'pso', 'PSO541G2722' => 'pso', 'PSO541G4560' => 'pso', 'PSO675G1171' => 'pso', 'QL03p043045' => 'qlo', 'QL08p033823' => 'qlo', 'QL08p033836' => 'qlo', 'RcHm_v2.0_Chr2g0160071' => 'rch', 'RcHm_v2.0_Chr2g0160081' => 'rch', 'Rhsim04G0056600' => 'rsi', 'Rhsim06G0158100' => 'rsi', 'Sabra07G0098300' => 'sbr', 'Sabra08G0110200' => 'sbr', 'Sabra11G0073000' => 'sbr', 'Sabra17G0025700' => 'sbr', 'Sabra17G0025800' => 'sbr', 'SalBow1G3276' => 'sbo', 'SalBow7G2009' => 'sbo', 'SalBow7G4184' => 'sbo', 'Sc12g0002380' => 'sci', 'Sc12g0002390' => 'sci', 'Sed0013568' => 'sed', 'Sed0014701' => 'sed', 'Sed0020603' => 'sed', 'Sed0022558' => 'sed', 'SEGI_12996' => 'sgi', 'SEGI_18250' => 'sgi', 'SEGI_18604' => 'sgi', 'SEGI_20287' => 'sgi', 'SEGI_29039' => 'sgi', 'SEGI_35415' => 'sgi', 'SGA_v2.0_scaffold49G18333' => 'sas', 'SGA_v2.0_scaffold70G23419' => 'sas', 'SGA_v2.0_scaffold70G23420' => 'sas', 'SMO167G0005' => 'smo', 'SMO347G0022' => 'smo', 'SMO356G0403' => 'smo', 'Solyc07g052570.4' => 'sly', 'Solyc07g052600.3' => 'sly', 'Solyc12g005760.2' => 'sly', 'Sopen07g026180' => 'spe', 'Sopen07g026210' => 'spe', 'Sopen12g001680' => 'spe', 'Sp3g19820' => 'spa', 'Sp3g19830' => 'spa', 'TAR624G1196' => 'tar', 'TAR627G0099' => 'tar', 'TAR629G0018' => 'tar', 'TAR629G3333' => 'tar', 'THA.LOC104802537' => 'tha', 'THA.LOC104808497' => 'tha', 'THA.LOC104821752' => 'tha', 'Thecc.02G162300' => 'tca', 'Thecc.02G162400' => 'tca', 'Thhalv10020639m.g' => 'esa', 'Thhalv10021287m.g' => 'esa', 'TPR.G4158' => 'tpr', 'TPR.G4167' => 'tpr', 'TWI18G0733' => 'twi', 'TWI18G0897' => 'twi', 'TWI75G1691' => 'twi', 'unitig_21.g20003' => 'ugi', 'unitig_26.g9659' => 'ugi', 'unitig_578.g16774' => 'ugi', 'vmacro09324' => 'vma', 'vmacro10802' => 'vma', 'vmacro12227' => 'vma', 'vmacro12228' => 'vma', 'VMungo1080G1248' => 'vmu', 'VMungo1080G1612' => 'vmu', 'Zm00001eb066610' => 'zma', 'Zm00001eb069570' => 'zma', 'Zm00001eb069580' => 'zma', 'Zm00001eb431430' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001891', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001891' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001891', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '348', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001891' ) ), 'genes' => array( 'A01p33120' => 'bna', 'A03p42500' => 'bna', 'A05p26910' => 'bna', 'A05p26920' => 'bna', 'Aa31LG8G8410' => 'aar', 'Aa31LG8G8420' => 'aar', 'Aa31LG9G2160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2694' => 'aag', 'Actinidia00164' => 'ach', 'Actinidia12501' => 'ach', 'Actinidia12502' => 'ach', 'Actinidia30510' => 'ach', 'Actinidia32078' => 'ach', 'Actinidia32079' => 'ach', 'Ah.01g003690' => 'amhyb', 'Ah.01g014600' => 'amhyb', 'Ah.15g093450' => 'amhyb', 'AL3G35970' => 'aly', 'AL3G35980' => 'aly', 'AL3G36020' => 'aly', 'AL5G18570' => 'aly', 'AL7G32320' => 'aly', 'Aqoxy4G02095' => 'aox', 'Aqoxy4G02096' => 'aox', 'Aqoxy4G02099' => 'aox', 'Aqoxy4G02100' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VZW82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62D34N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C63SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI1LQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FTMH30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3MG1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZYWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG5XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA654' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDYX4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX9XDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1IBZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TRUR1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAPR04' => 'arhy', 'AT3G21820' => 'ath', 'AT3G21865' => 'ath', 'ATR0008G001' => 'atr', 'ATR0618G228' => 'atr', 'ATR0804G013' => 'atr', 'Atru.chr6.3145' => 'acertr', 'Atru.chr6.3148' => 'acertr', 'Atru.chr6.3149' => 'acertr', 'Atru.chr8.690' => 'acertr', 'Atru.chr8.691' => 'acertr', 'AUR62025059' => 'cqu', 'AUR62037141' => 'cqu', 'AUR62040522' => 'cqu', 'AUR62040523' => 'cqu', 'BcaB04g19187' => 'bca', 'BcaB04g20555' => 'bca', 'BcaB06g26287' => 'bca', 'BcaB06g26288' => 'bca', 'BcaC01g03476' => 'bca', 'BcaC05g28120' => 'bca', 'BcaC05g28122' => 'bca', 'BcaC09g49122' => 'bca', 'BcaC09g49125' => 'bca', 'BcaC09g49127' => 'bca', 'BcaC09g49129' => 'bca', 'BolC1t04190H' => 'bol', 'BolC1t04191H' => 'bol', 'BolC3t17487H' => 'bol', 'BolC5t32890H' => 'bol', 'BolC5t32893H' => 'bol', 'BraA01t03435Z' => 'bra', 'BraA03t13403Z' => 'bra', 'BraA05t21571Z' => 'bra', 'BraA05t21572Z' => 'bra', 'C01p42350' => 'bna', 'C01p42360' => 'bna', 'C03p52060' => 'bna', 'C05p41520' => 'bna', 'C05p41560' => 'bna', 'CAN.G80.19' => 'can', 'CAN.G921.6' => 'can', 'CAN.G921.8' => 'can', 'CANSAT64G0421' => 'cansat', 'CANSAT64G2761' => 'cansat', 'CARHR097810' => 'chi', 'CARHR097820' => 'chi', 'Carub.0003s2190' => 'cru', 'Carub.0003s2193' => 'cru', 'Ca_27743_v3' => 'car', 'CBR_g22069' => 'cbr', 'Cc05_g05050' => 'ccan', 'Cc05_g05140' => 'ccan', 'CDE01G0775' => 'cde', 'CDE04G1330' => 'cde', 'CDE04G3419' => 'cde', 'CDE07G1567' => 'cde', 'Cfa014439' => 'cfa', 'Cfa024134' => 'cfa', 'Ciclev10015025m.g' => 'ccl', 'Ciclev10016204m.g' => 'ccl', 'CiPaw.03G162900' => 'cil', 'CiPaw.03G163000' => 'cil', 'CiPaw.04G117900' => 'cil', 'ClCG02G001770' => 'cla', 'ClCG02G008440' => 'cla', 'ClCG02G008450' => 'cla', 'COL.COLO4_12984' => 'col', 'Cpa.g.sc8.235' => 'cpa', 'Cpa.g.sc8.236' => 'cpa', 'Cre01.g041100' => 'cre', 'Cre02.g116850' => 'cre', 'Cre06.g283150' => 'cre', 'CsaV3_2G035180' => 'csa', 'CsaV3_2G035190' => 'csa', 'CsaV3_7G003770' => 'csa', 'CSS0016042' => 'camsi', 'CSS0020073' => 'camsi', 'CSS0024189' => 'camsi', 'CSS0035637' => 'camsi', 'CSS0039018' => 'camsi', 'CSS0049956' => 'camsi', 'DCAR_002621' => 'dca', 'DCAR_012956' => 'dca', 'DCAR_012957' => 'dca', 'DCAR_012959' => 'dca', 'DCAR_019211' => 'dca', 'Dinv02385' => 'din', 'Dinv18531' => 'din', 'Dinv39686' => 'din', 'Dinv39687' => 'din', 'Duzib052G0092' => 'dzi', 'Duzib052G0734' => 'dzi', 'Duzib132G0769' => 'dzi', 'Duzib248G1135' => 'dzi', 'ECA238G0562' => 'eca', 'EL10Ac7g17313' => 'bvu', 'EL10Ac9g20654' => 'bvu', 'Eucgr.K00818' => 'egr', 'Eucgr.K00819' => 'egr', 'Eucgr.K00821' => 'egr', 'Eucgr.K00822' => 'egr', 'Eucgr.K00824' => 'egr', 'Eucgr.K00825' => 'egr', 'Eucgr.K00839' => 'egr', 'Eucgr.K00860' => 'egr', 'Eucgr.K00861' => 'egr', 'FAN02G0497' => 'fan', 'FAN05G1073' => 'fan', 'FAN09G1075' => 'fan', 'FAN09G3447' => 'fan', 'FAN14G5299' => 'fan', 'FvH4_6g43540' => 'fve', 'FvH4_6g43550' => 'fve', 'Glyma.12G195700' => 'gma', 'Glyma.12G195800' => 'gma', 'Glyma.13G037950' => 'gma', 'Glyma.13G306700' => 'gma', 'Glyma.13G306800' => 'gma', 'Gohir.A01G013300' => 'ghi', 'Gohir.A03G163600' => 'ghi', 'Gohir.A12G134800' => 'ghi', 'Gohir.D01G014600' => 'ghi', 'Gohir.D02G187000' => 'ghi', 'Gohir.D12G138400' => 'ghi', 'Gorai.002G016300' => 'gra', 'Gorai.005G209300' => 'gra', 'Gorai.008G149900' => 'gra', 'GSVIVG01008772001' => 'vvi', 'GSVIVG01030624001' => 'vvi', 'GSVIVG01030625001' => 'vvi', 'HanXRQChr02g0039391' => 'han', 'HanXRQChr10g0297471' => 'han', 'HanXRQChr10g0297501' => 'han', 'HanXRQChr15g0479201' => 'han', 'HanXRQChr17g0560941' => 'han', 'Haze_12897' => 'cav', 'Haze_12898' => 'cav', 'Hma1.2p1_0439F.1_g153260' => 'hma', 'Hma1.2p1_0613F.1_g189170' => 'hma', 'HPP92_004139' => 'vpl', 'HPP92_009055' => 'vpl', 'HPP92_009391' => 'vpl', 'HPP92_009396' => 'vpl', 'Hund01107' => 'sun', 'Hund01141' => 'sun', 'Lalb_Chr01g0005561' => 'lal', 'Lalb_Chr03g0028901' => 'lal', 'Lalb_Chr14g0375711' => 'lal', 'Lalb_Chr24g0393071' => 'lal', 'Lj1A756G86' => 'lonja', 'Lj3A852T54' => 'lonja', 'Lj3g0010899' => 'lja', 'Lj3g0012140' => 'lja', 'Lj3g0025447' => 'lja', 'Lj8A122T60' => 'lonja', 'Lj8A122T61' => 'lonja', 'Lsat_1_v5_gn_3_136420' => 'lsa', 'Lsat_1_v5_gn_3_43721' => 'lsa', 'Lsat_1_v5_gn_4_69321' => 'lsa', 'Lsat_1_v5_gn_6_102801' => 'lsa', 'Lsat_1_v5_gn_8_129400' => 'lsa', 'Manes.12G078400' => 'mes', 'Manes.13G073100' => 'mes', 'Mapoly0037s0074' => 'mpo', 'Mapoly0057s0093' => 'mpo', 'MBI01_g06556_MAGBIO' => 'mbi', 'MBI01_g08957_MAGBIO' => 'mbi', 'MBI03_g22259_MAGBIO' => 'mbi', 'MBI06_g15670_MAGBIO' => 'mbi', 'MBI18_g07895_MAGBIO' => 'mbi', 'MBI18_g10800_MAGBIO' => 'mbi', 'MBI18_g17390_MAGBIO' => 'mbi', 'MBI18_g19140_MAGBIO' => 'mbi', 'MBI18_g23508_MAGBIO' => 'mbi', 'MBI18_g41217_MAGBIO' => 'mbi', 'MBI18_g41692_MAGBIO' => 'mbi', 'MCO05G707' => 'mco', 'MCO06G294' => 'mco', 'MCO15G351' => 'mco', 'MCO16G494' => 'mco', 'MD09G1105000' => 'mdo', 'MD09G1105100' => 'mdo', 'MD17G1092700' => 'mdo', 'Medtr2g088740' => 'mtr', 'Medtr2g088820' => 'mtr', 'Medtr2g088850' => 'mtr', 'MELO3C018802.2' => 'cme', 'MELO3C019235.2' => 'cme', 'MELO3C019236.2' => 'cme', 'Migut.H01220' => 'egut', 'Migut.M00394' => 'egut', 'Migut.M00395' => 'egut', 'MSTRG.12288' => 'ama', 'MSTRG.14154' => 'ama', 'Nitab4.5_0000631g0040' => 'nta', 'Nitab4.5_0001176g0130' => 'nta', 'Nitab4.5_0001176g0150' => 'nta', 'Nitab4.5_0001176g0160' => 'nta', 'Nitab4.5_0005894g0030' => 'nta', 'Nitab4.5_0005894g0040' => 'nta', 'Nitab4.5_0006207g0030' => 'nta', 'Nn1g03668' => 'nnu', 'Nn1g06995' => 'nnu', 'Oeu011080.1' => 'oeu', 'Oeu041941.2' => 'oeu', 'Oeu041959.1' => 'oeu', 'Oeu052537.1' => 'oeu', 'Oeu052538.1' => 'oeu', 'Os04g0629000' => 'osa', 'Os04g0629100' => 'osa', 'Os04g0672800' => 'osa', 'Peaxi162Scf00007g01229' => 'pax', 'Peaxi162Scf00007g01230' => 'pax', 'PGR142G0845' => 'pgr', 'PGR142G2396' => 'pgr', 'PGSC0003DMG400026174' => 'stu', 'Phvul.005G113600' => 'pvu', 'Phvul.005G113700' => 'pvu', 'Potri.007G121600' => 'ptr', 'Potri.017G038700' => 'ptr', 'Potri.017G038800' => 'ptr', 'Pp3c13_21910' => 'ppa', 'Pp3c3_16800' => 'ppa', 'Pp3c3_16810' => 'ppa', 'PRCOL_00001357' => 'pco', 'PRCOL_00003191' => 'pco', 'Prupe.3G147600' => 'ppe', 'Prupe.3G220400' => 'ppe', 'Prupe.3G220500' => 'ppe', 'Psat0s4720g0040' => 'psa', 'Psat5g265280' => 'psa', 'Psat5g265320' => 'psa', 'Psat6g077080' => 'psa', 'Psat6g077120' => 'psa', 'PSO063G3135' => 'pso', 'PSO541G2722' => 'pso', 'PSO541G4560' => 'pso', 'PSO675G1171' => 'pso', 'QL03p043045' => 'qlo', 'QL08p033823' => 'qlo', 'QL08p033836' => 'qlo', 'RcHm_v2.0_Chr2g0160071' => 'rch', 'RcHm_v2.0_Chr2g0160081' => 'rch', 'Rhsim04G0056600' => 'rsi', 'Rhsim06G0158100' => 'rsi', 'Sabra07G0098300' => 'sbr', 'Sabra08G0110200' => 'sbr', 'Sabra11G0073000' => 'sbr', 'Sabra17G0025700' => 'sbr', 'Sabra17G0025800' => 'sbr', 'SalBow1G3276' => 'sbo', 'SalBow7G2009' => 'sbo', 'SalBow7G4184' => 'sbo', 'Sc12g0002380' => 'sci', 'Sc12g0002390' => 'sci', 'Sed0013568' => 'sed', 'Sed0014701' => 'sed', 'Sed0020603' => 'sed', 'Sed0022558' => 'sed', 'SEGI_12996' => 'sgi', 'SEGI_18250' => 'sgi', 'SEGI_18604' => 'sgi', 'SEGI_20287' => 'sgi', 'SEGI_29039' => 'sgi', 'SEGI_35415' => 'sgi', 'SGA_v2.0_scaffold49G18333' => 'sas', 'SGA_v2.0_scaffold70G23419' => 'sas', 'SGA_v2.0_scaffold70G23420' => 'sas', 'SMO167G0005' => 'smo', 'SMO347G0022' => 'smo', 'SMO356G0403' => 'smo', 'Solyc07g052570.4' => 'sly', 'Solyc07g052600.3' => 'sly', 'Solyc12g005760.2' => 'sly', 'Sopen07g026180' => 'spe', 'Sopen07g026210' => 'spe', 'Sopen12g001680' => 'spe', 'Sp3g19820' => 'spa', 'Sp3g19830' => 'spa', 'TAR624G1196' => 'tar', 'TAR627G0099' => 'tar', 'TAR629G0018' => 'tar', 'TAR629G3333' => 'tar', 'THA.LOC104802537' => 'tha', 'THA.LOC104808497' => 'tha', 'THA.LOC104821752' => 'tha', 'Thecc.02G162300' => 'tca', 'Thecc.02G162400' => 'tca', 'Thhalv10020639m.g' => 'esa', 'Thhalv10021287m.g' => 'esa', 'TPR.G4158' => 'tpr', 'TPR.G4167' => 'tpr', 'TWI18G0733' => 'twi', 'TWI18G0897' => 'twi', 'TWI75G1691' => 'twi', 'unitig_21.g20003' => 'ugi', 'unitig_26.g9659' => 'ugi', 'unitig_578.g16774' => 'ugi', 'vmacro09324' => 'vma', 'vmacro10802' => 'vma', 'vmacro12227' => 'vma', 'vmacro12228' => 'vma', 'VMungo1080G1248' => 'vmu', 'VMungo1080G1612' => 'vmu', 'Zm00001eb066610' => 'zma', 'Zm00001eb069570' => 'zma', 'Zm00001eb069580' => 'zma', 'Zm00001eb431430' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001891' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001891' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001891' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001891' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151