Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '351', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p33050' => 'bna', 'A02p40240' => 'bna', 'A02p40280' => 'bna', 'A02p40290' => 'bna', 'A06p08760' => 'bna', 'A06p35320' => 'bna', 'A09p63530' => 'bna', 'Aa31LG1G1870' => 'aar', 'Aa31LG4G17990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5657' => 'aag', 'Actinidia08700' => 'ach', 'Actinidia19539' => 'ach', 'Actinidia34272' => 'ach', 'Actinidia37704' => 'ach', 'Ah.03g136520' => 'amhyb', 'Ah.07g204410' => 'amhyb', 'AL1G24550' => 'aly', 'AL5G15480' => 'aly', 'AL6G36110' => 'aly', 'Aqoxy4G02477' => 'aox', 'Aqoxy5G02949' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4LT5BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL89FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7N93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6JJW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBX16R' => 'arhy', 'AT1G12910' => 'ath', 'AT3G26640' => 'ath', 'AT5G24520' => 'ath', 'ATR0582G331' => 'atr', 'ATR0661G240' => 'atr', 'ATR0820G133' => 'atr', 'Atru.chr12.2441' => 'acertr', 'Atru.chr12.2442' => 'acertr', 'Atru.chr6.2741' => 'acertr', 'Atru.chr8.1449' => 'acertr', 'AUR62004940' => 'cqu', 'AUR62005988' => 'cqu', 'AUR62017460' => 'cqu', 'AUR62028082' => 'cqu', 'AUR62032528' => 'cqu', 'BcaB08g34241' => 'bca', 'BcaC03g17966' => 'bca', 'BcaC04g22046' => 'bca', 'BcaNung01239' => 'bca', 'BcaNung02017' => 'bca', 'BcaNung02018' => 'bca', 'BcaNung07023' => 'bca', 'BcaNung07024' => 'bca', 'BolC1t01039H' => 'bol', 'BolC1t01040H' => 'bol', 'BolC2t12080H' => 'bol', 'BolC2t12081H' => 'bol', 'BolC5t29781H' => 'bol', 'BolC7t44845H' => 'bol', 'BolC8t49835H' => 'bol', 'BolC8t52243H' => 'bol', 'BolC9t55329H' => 'bol', 'BraA01t03427Z' => 'bra', 'BraA02t08997Z' => 'bra', 'BraA02t08998Z' => 'bra', 'BraA06t24073Z' => 'bra', 'BraA06t26458Z' => 'bra', 'BraA09t41704Z' => 'bra', 'C01p10790' => 'bna', 'C02p60240' => 'bna', 'C05p10350' => 'bna', 'C07p43200' => 'bna', 'C07p44020' => 'bna', 'C08p21990' => 'bna', 'C08p47030' => 'bna', 'CANSAT21G1359' => 'cansat', 'CANSAT64G2317' => 'cansat', 'CANSAT64G2623' => 'cansat', 'CARHR013240' => 'chi', 'CARHR013270' => 'chi', 'CARHR188910' => 'chi', 'Carub.0001s1268' => 'cru', 'Carub.0005s0465' => 'cru', 'Carub.0006s2233' => 'cru', 'Ca_08240_v3' => 'car', 'Ca_16797_v3' => 'car', 'CBR_g30801' => 'cbr', 'Cc00_g10940' => 'ccan', 'Cc00_g29750' => 'ccan', 'Cc02_g00780' => 'ccan', 'Cc07_g01410' => 'ccan', 'CDE02G0080' => 'cde', 'CDE02G0284' => 'cde', 'CDE02G2659' => 'cde', 'CDE04G3673' => 'cde', 'CDE09G0992' => 'cde', 'CDE12G0578' => 'cde', 'Cfa007129' => 'cfa', 'Cfa016644' => 'cfa', 'Cfa027113' => 'cfa', 'Ciclev10005375m.g' => 'ccl', 'Ciclev10013531m.g' => 'ccl', 'Ciclev10015815m.g' => 'ccl', 'CiPaw.03G000100' => 'cil', 'CiPaw.06G040900' => 'cil', 'CiPaw.09G017000' => 'cil', 'ClCG05G012420' => 'cla', 'ClCG10G008610' => 'cla', 'COL.COLO4_06008' => 'col', 'COL.COLO4_08136' => 'col', 'COL.COLO4_13412' => 'col', 'COL.COLO4_14375' => 'col', 'COL.COLO4_29674' => 'col', 'Cpa.g.sc3.159' => 'cpa', 'Cre16.g674000' => 'cre', 'CsaV3_3G020120' => 'csa', 'CsaV3_4G008980' => 'csa', 'CSS0004406' => 'camsi', 'CSS0042189' => 'camsi', 'CSS0049078' => 'camsi', 'DCAR_000204' => 'dca', 'DCAR_014316' => 'dca', 'DCAR_016686' => 'dca', 'DCAR_020377' => 'dca', 'Dinv17297' => 'din', 'Dinv25609' => 'din', 'Dinv29208' => 'din', 'Dinv33257' => 'din', 'Duzib068G0377' => 'dzi', 'Duzib084G0332' => 'dzi', 'Duzib093G0815' => 'dzi', 'Duzib205G0313' => 'dzi', 'Duzib212G0604' => 'dzi', 'ECA238G4071' => 'eca', 'ECA248G2430' => 'eca', 'EL10Ac3g05168' => 'bvu', 'EL10Ac6g13911' => 'bvu', 'Eucgr.A01400' => 'egr', 'Eucgr.A02633' => 'egr', 'Eucgr.I01562' => 'egr', 'FAN01G0715' => 'fan', 'FAN02G2100' => 'fan', 'FAN02G2214' => 'fan', 'FAN03G2906' => 'fan', 'FAN05G4979' => 'fan', 'FAN05G5250' => 'fan', 'FAN05G5498' => 'fan', 'FAN09G3975' => 'fan', 'FAN09G4781' => 'fan', 'FAN10G2792' => 'fan', 'FAN10G3764' => 'fan', 'FAN14G3497' => 'fan', 'FAN14G4833' => 'fan', 'FvH4_6g19450' => 'fve', 'FvH4_6g54470' => 'fve', 'FvH4_7g32970' => 'fve', 'Glyma.04G228000' => 'gma', 'Glyma.06G136900' => 'gma', 'Glyma.16G044800' => 'gma', 'Glyma.19G106900' => 'gma', 'Gohir.1Z049560' => 'ghi', 'Gohir.A03G095400' => 'ghi', 'Gohir.A04G059200' => 'ghi', 'Gohir.A08G104600' => 'ghi', 'Gohir.A10G126550' => 'ghi', 'Gohir.D02G113700' => 'ghi', 'Gohir.D04G000300' => 'ghi', 'Gohir.D04G084500' => 'ghi', 'Gohir.D08G116300' => 'ghi', 'Gohir.D10G140100' => 'ghi', 'Gorai.004G125200' => 'gra', 'Gorai.005G129400' => 'gra', 'Gorai.009G399800' => 'gra', 'Gorai.011G155800' => 'gra', 'Gorai.012G001200' => 'gra', 'GSVIVG01032940001' => 'vvi', 'GSVIVG01033890001' => 'vvi', 'GSVIVG01038651001' => 'vvi', 'HanXRQChr02g0040811' => 'han', 'HanXRQChr07g0197981' => 'han', 'HanXRQChr11g0336491' => 'han', 'HanXRQChr11g0342411' => 'han', 'HanXRQChr11g0344051' => 'han', 'HanXRQChr17g0549181' => 'han', 'Haze_00312' => 'cav', 'Haze_14992' => 'cav', 'Haze_19650' => 'cav', 'Hma1.2p1_0415F.1_g148210' => 'hma', 'Hma1.2p1_0868F.1_g230400' => 'hma', 'HPP92_023103' => 'vpl', 'Hund09718' => 'sun', 'Lalb_Chr14g0364201' => 'lal', 'Lalb_Chr23g0271951' => 'lal', 'Lalb_Chr24g0403031' => 'lal', 'Lj1g0002618' => 'lja', 'Lj1g0024135' => 'lja', 'Lj1g0026985' => 'lja', 'Lj1P1028T38' => 'lonja', 'Lj2C382T12' => 'lonja', 'Lj7P285T36' => 'lonja', 'Lj9P607T48' => 'lonja', 'Lsat_1_v5_gn_1_129320' => 'lsa', 'Lsat_1_v5_gn_2_95200' => 'lsa', 'Manes.04G096000' => 'mes', 'Manes.08G081811' => 'mes', 'Manes.09G052400' => 'mes', 'Manes.10G055500' => 'mes', 'Manes.11G072300' => 'mes', 'Mapoly0027s0005' => 'mpo', 'Mapoly0161s0021' => 'mpo', 'Mapoly0259s0004' => 'mpo', 'MBI11_g13140_MAGBIO' => 'mbi', 'MBI11_g40921_MAGBIO' => 'mbi', 'MCO14G404' => 'mco', 'MD01G1228700' => 'mdo', 'MD07G1299800' => 'mdo', 'MD09G1000600' => 'mdo', 'MD09G1142200' => 'mdo', 'MD12G1030700' => 'mdo', 'MD14G1031200' => 'mdo', 'MD17G1003400' => 'mdo', 'Medtr3g092830' => 'mtr', 'Medtr3g092840' => 'mtr', 'Medtr7g084810' => 'mtr', 'MELO3C014751.2' => 'cme', 'MELO3C018988.2' => 'cme', 'Migut.F00147' => 'egut', 'Migut.H01347' => 'egut', 'Migut.M01864' => 'egut', 'MSTRG.16270' => 'ama', 'MSTRG.26973' => 'ama', 'MSTRG.7517' => 'ama', 'MSTRG.8607' => 'ama', 'Nitab4.5_0000319g0010' => 'nta', 'Nitab4.5_0009395g0010' => 'nta', 'Nitab4.5_0015003g0010' => 'nta', 'Nn2g14222' => 'nnu', 'Nn3g16189' => 'nnu', 'Nn4g22052' => 'nnu', 'Nn7g37724' => 'nnu', 'Oeu008949.1' => 'oeu', 'Oeu040092.1' => 'oeu', 'Oeu061994.1' => 'oeu', 'Oeu062807.1' => 'oeu', 'Os02g0524600' => 'osa', 'Os02g0682500' => 'osa', 'Peaxi162Scf00827g00032' => 'pax', 'Peaxi162Scf00912g00146' => 'pax', 'PGR004G2092' => 'pgr', 'PGR042G0141' => 'pgr', 'PGR042G1329' => 'pgr', 'PGSC0003DMG400000561' => 'stu', 'PGSC0003DMG400009907' => 'stu', 'PGSC0003DMG400026477' => 'stu', 'PGSC0003DMG400044039' => 'stu', 'Phvul.001G098000' => 'pvu', 'Phvul.001G192200' => 'pvu', 'Phvul.009G044700' => 'pvu', 'Potri.002G220500' => 'ptr', 'Potri.006G209000' => 'ptr', 'Potri.012G006100' => 'ptr', 'Potri.014G140700' => 'ptr', 'Potri.015G002600' => 'ptr', 'Potri.016G075800' => 'ptr', 'Pp3c19_21960' => 'ppa', 'Pp3c19_9970' => 'ppa', 'Pp3c21_21010' => 'ppa', 'Pp3c22_18860' => 'ppa', 'PRCOL_00003467' => 'pco', 'Prupe.2G319500' => 'ppe', 'Prupe.3G315600' => 'ppe', 'Prupe.7G101800' => 'ppe', 'Psat0s126g0120' => 'psa', 'Psat3g091680' => 'psa', 'Psat5g071720' => 'psa', 'PSO017G4193' => 'pso', 'PSO063G2595' => 'pso', 'PSO478G5161' => 'pso', 'PSO782G1536' => 'pso', 'QL02p068113' => 'qlo', 'QL02p068117' => 'qlo', 'QL07p038196' => 'qlo', 'QL07p038205' => 'qlo', 'QL09p007015' => 'qlo', 'RcHm_v2.0_Chr1g0382931' => 'rch', 'RcHm_v2.0_Chr2g0176751' => 'rch', 'RcHm_v2.0_Chr3g0474771' => 'rch', 'Rhsim08G0037100' => 'rsi', 'Rhsim09G0209900' => 'rsi', 'Sabra06G0160900' => 'sbr', 'Sabra12G0003600' => 'sbr', 'Sabra12G0008100' => 'sbr', 'Sabra14G0106100' => 'sbr', 'Sabra15G0001700' => 'sbr', 'SalBow6G2567' => 'sbo', 'SalBow8G1324' => 'sbo', 'Sc03g0005430' => 'sci', 'Sc19g0000550' => 'sci', 'Sed0012223' => 'sed', 'Sed0024748' => 'sed', 'SEGI_05077' => 'sgi', 'SEGI_09231' => 'sgi', 'SEGI_36794' => 'sgi', 'SGA_v2.0_scaffold157G37430' => 'sas', 'SGA_v2.0_scaffold184G39990' => 'sas', 'SGA_v2.0_scaffold191G40445' => 'sas', 'SGA_v2.0_scaffold1G00220' => 'sas', 'SGA_v2.0_scaffold223G42829' => 'sas', 'SGA_v2.0_scaffold227G43211' => 'sas', 'SGA_v2.0_scaffold44G16850' => 'sas', 'SGA_v2.0_scaffold50G18471' => 'sas', 'SGA_v2.0_scaffold61G21131' => 'sas', 'SGA_v2.0_scaffold61G21224' => 'sas', 'SHI00495' => 'shi', 'SHI34880' => 'shi', 'SHI41362' => 'shi', 'SMO367G0275' => 'smo', 'Solyc03g081200.3' => 'sly', 'Solyc03g081210.1' => 'sly', 'Solyc03g097340.1' => 'sly', 'Solyc04g082470.3' => 'sly', 'Sopen03g021930' => 'spe', 'Sopen03g021940' => 'spe', 'Sopen03g028100' => 'spe', 'Sopen04g036080' => 'spe', 'Sp1g11480' => 'spa', 'Sp2g15760' => 'spa', 'Sp2g22830' => 'spa', 'TAR374G1109' => 'tar', 'TAR374G1430' => 'tar', 'TAR629G2325' => 'tar', 'TAR636G0637' => 'tar', 'THA.LOC104798988' => 'tha', 'THA.LOC104805293' => 'tha', 'Thecc.03G209300' => 'tca', 'Thecc.04G053000' => 'tca', 'Thecc.05G095200' => 'tca', 'Thhalv10004515m.g' => 'esa', 'Thhalv10005280m.g' => 'esa', 'Thhalv10008091m.g' => 'esa', 'TPR.G20661' => 'tpr', 'TPR.G33378' => 'tpr', 'TWI23G0637' => 'twi', 'TWI32G0051' => 'twi', 'TWI34G1897' => 'twi', 'TWI39G0792' => 'twi', 'TWI74G1122' => 'twi', 'unitig_0.g2442' => 'ugi', 'vmacro10162' => 'vma', 'vmacro22929' => 'vma', 'VMungo1309G0260' => 'vmu', 'VMungo1383G1050' => 'vmu', 'VMungo1383G1741' => 'vmu', 'Zm00001eb242340' => 'zma', 'Zm00001eb250740' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001874', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001874' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '351', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001874' ) ), 'genes' => array( 'A01p33050' => 'bna', 'A02p40240' => 'bna', 'A02p40280' => 'bna', 'A02p40290' => 'bna', 'A06p08760' => 'bna', 'A06p35320' => 'bna', 'A09p63530' => 'bna', 'Aa31LG1G1870' => 'aar', 'Aa31LG4G17990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5657' => 'aag', 'Actinidia08700' => 'ach', 'Actinidia19539' => 'ach', 'Actinidia34272' => 'ach', 'Actinidia37704' => 'ach', 'Ah.03g136520' => 'amhyb', 'Ah.07g204410' => 'amhyb', 'AL1G24550' => 'aly', 'AL5G15480' => 'aly', 'AL6G36110' => 'aly', 'Aqoxy4G02477' => 'aox', 'Aqoxy5G02949' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4LT5BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL89FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7N93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6JJW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBX16R' => 'arhy', 'AT1G12910' => 'ath', 'AT3G26640' => 'ath', 'AT5G24520' => 'ath', 'ATR0582G331' => 'atr', 'ATR0661G240' => 'atr', 'ATR0820G133' => 'atr', 'Atru.chr12.2441' => 'acertr', 'Atru.chr12.2442' => 'acertr', 'Atru.chr6.2741' => 'acertr', 'Atru.chr8.1449' => 'acertr', 'AUR62004940' => 'cqu', 'AUR62005988' => 'cqu', 'AUR62017460' => 'cqu', 'AUR62028082' => 'cqu', 'AUR62032528' => 'cqu', 'BcaB08g34241' => 'bca', 'BcaC03g17966' => 'bca', 'BcaC04g22046' => 'bca', 'BcaNung01239' => 'bca', 'BcaNung02017' => 'bca', 'BcaNung02018' => 'bca', 'BcaNung07023' => 'bca', 'BcaNung07024' => 'bca', 'BolC1t01039H' => 'bol', 'BolC1t01040H' => 'bol', 'BolC2t12080H' => 'bol', 'BolC2t12081H' => 'bol', 'BolC5t29781H' => 'bol', 'BolC7t44845H' => 'bol', 'BolC8t49835H' => 'bol', 'BolC8t52243H' => 'bol', 'BolC9t55329H' => 'bol', 'BraA01t03427Z' => 'bra', 'BraA02t08997Z' => 'bra', 'BraA02t08998Z' => 'bra', 'BraA06t24073Z' => 'bra', 'BraA06t26458Z' => 'bra', 'BraA09t41704Z' => 'bra', 'C01p10790' => 'bna', 'C02p60240' => 'bna', 'C05p10350' => 'bna', 'C07p43200' => 'bna', 'C07p44020' => 'bna', 'C08p21990' => 'bna', 'C08p47030' => 'bna', 'CANSAT21G1359' => 'cansat', 'CANSAT64G2317' => 'cansat', 'CANSAT64G2623' => 'cansat', 'CARHR013240' => 'chi', 'CARHR013270' => 'chi', 'CARHR188910' => 'chi', 'Carub.0001s1268' => 'cru', 'Carub.0005s0465' => 'cru', 'Carub.0006s2233' => 'cru', 'Ca_08240_v3' => 'car', 'Ca_16797_v3' => 'car', 'CBR_g30801' => 'cbr', 'Cc00_g10940' => 'ccan', 'Cc00_g29750' => 'ccan', 'Cc02_g00780' => 'ccan', 'Cc07_g01410' => 'ccan', 'CDE02G0080' => 'cde', 'CDE02G0284' => 'cde', 'CDE02G2659' => 'cde', 'CDE04G3673' => 'cde', 'CDE09G0992' => 'cde', 'CDE12G0578' => 'cde', 'Cfa007129' => 'cfa', 'Cfa016644' => 'cfa', 'Cfa027113' => 'cfa', 'Ciclev10005375m.g' => 'ccl', 'Ciclev10013531m.g' => 'ccl', 'Ciclev10015815m.g' => 'ccl', 'CiPaw.03G000100' => 'cil', 'CiPaw.06G040900' => 'cil', 'CiPaw.09G017000' => 'cil', 'ClCG05G012420' => 'cla', 'ClCG10G008610' => 'cla', 'COL.COLO4_06008' => 'col', 'COL.COLO4_08136' => 'col', 'COL.COLO4_13412' => 'col', 'COL.COLO4_14375' => 'col', 'COL.COLO4_29674' => 'col', 'Cpa.g.sc3.159' => 'cpa', 'Cre16.g674000' => 'cre', 'CsaV3_3G020120' => 'csa', 'CsaV3_4G008980' => 'csa', 'CSS0004406' => 'camsi', 'CSS0042189' => 'camsi', 'CSS0049078' => 'camsi', 'DCAR_000204' => 'dca', 'DCAR_014316' => 'dca', 'DCAR_016686' => 'dca', 'DCAR_020377' => 'dca', 'Dinv17297' => 'din', 'Dinv25609' => 'din', 'Dinv29208' => 'din', 'Dinv33257' => 'din', 'Duzib068G0377' => 'dzi', 'Duzib084G0332' => 'dzi', 'Duzib093G0815' => 'dzi', 'Duzib205G0313' => 'dzi', 'Duzib212G0604' => 'dzi', 'ECA238G4071' => 'eca', 'ECA248G2430' => 'eca', 'EL10Ac3g05168' => 'bvu', 'EL10Ac6g13911' => 'bvu', 'Eucgr.A01400' => 'egr', 'Eucgr.A02633' => 'egr', 'Eucgr.I01562' => 'egr', 'FAN01G0715' => 'fan', 'FAN02G2100' => 'fan', 'FAN02G2214' => 'fan', 'FAN03G2906' => 'fan', 'FAN05G4979' => 'fan', 'FAN05G5250' => 'fan', 'FAN05G5498' => 'fan', 'FAN09G3975' => 'fan', 'FAN09G4781' => 'fan', 'FAN10G2792' => 'fan', 'FAN10G3764' => 'fan', 'FAN14G3497' => 'fan', 'FAN14G4833' => 'fan', 'FvH4_6g19450' => 'fve', 'FvH4_6g54470' => 'fve', 'FvH4_7g32970' => 'fve', 'Glyma.04G228000' => 'gma', 'Glyma.06G136900' => 'gma', 'Glyma.16G044800' => 'gma', 'Glyma.19G106900' => 'gma', 'Gohir.1Z049560' => 'ghi', 'Gohir.A03G095400' => 'ghi', 'Gohir.A04G059200' => 'ghi', 'Gohir.A08G104600' => 'ghi', 'Gohir.A10G126550' => 'ghi', 'Gohir.D02G113700' => 'ghi', 'Gohir.D04G000300' => 'ghi', 'Gohir.D04G084500' => 'ghi', 'Gohir.D08G116300' => 'ghi', 'Gohir.D10G140100' => 'ghi', 'Gorai.004G125200' => 'gra', 'Gorai.005G129400' => 'gra', 'Gorai.009G399800' => 'gra', 'Gorai.011G155800' => 'gra', 'Gorai.012G001200' => 'gra', 'GSVIVG01032940001' => 'vvi', 'GSVIVG01033890001' => 'vvi', 'GSVIVG01038651001' => 'vvi', 'HanXRQChr02g0040811' => 'han', 'HanXRQChr07g0197981' => 'han', 'HanXRQChr11g0336491' => 'han', 'HanXRQChr11g0342411' => 'han', 'HanXRQChr11g0344051' => 'han', 'HanXRQChr17g0549181' => 'han', 'Haze_00312' => 'cav', 'Haze_14992' => 'cav', 'Haze_19650' => 'cav', 'Hma1.2p1_0415F.1_g148210' => 'hma', 'Hma1.2p1_0868F.1_g230400' => 'hma', 'HPP92_023103' => 'vpl', 'Hund09718' => 'sun', 'Lalb_Chr14g0364201' => 'lal', 'Lalb_Chr23g0271951' => 'lal', 'Lalb_Chr24g0403031' => 'lal', 'Lj1g0002618' => 'lja', 'Lj1g0024135' => 'lja', 'Lj1g0026985' => 'lja', 'Lj1P1028T38' => 'lonja', 'Lj2C382T12' => 'lonja', 'Lj7P285T36' => 'lonja', 'Lj9P607T48' => 'lonja', 'Lsat_1_v5_gn_1_129320' => 'lsa', 'Lsat_1_v5_gn_2_95200' => 'lsa', 'Manes.04G096000' => 'mes', 'Manes.08G081811' => 'mes', 'Manes.09G052400' => 'mes', 'Manes.10G055500' => 'mes', 'Manes.11G072300' => 'mes', 'Mapoly0027s0005' => 'mpo', 'Mapoly0161s0021' => 'mpo', 'Mapoly0259s0004' => 'mpo', 'MBI11_g13140_MAGBIO' => 'mbi', 'MBI11_g40921_MAGBIO' => 'mbi', 'MCO14G404' => 'mco', 'MD01G1228700' => 'mdo', 'MD07G1299800' => 'mdo', 'MD09G1000600' => 'mdo', 'MD09G1142200' => 'mdo', 'MD12G1030700' => 'mdo', 'MD14G1031200' => 'mdo', 'MD17G1003400' => 'mdo', 'Medtr3g092830' => 'mtr', 'Medtr3g092840' => 'mtr', 'Medtr7g084810' => 'mtr', 'MELO3C014751.2' => 'cme', 'MELO3C018988.2' => 'cme', 'Migut.F00147' => 'egut', 'Migut.H01347' => 'egut', 'Migut.M01864' => 'egut', 'MSTRG.16270' => 'ama', 'MSTRG.26973' => 'ama', 'MSTRG.7517' => 'ama', 'MSTRG.8607' => 'ama', 'Nitab4.5_0000319g0010' => 'nta', 'Nitab4.5_0009395g0010' => 'nta', 'Nitab4.5_0015003g0010' => 'nta', 'Nn2g14222' => 'nnu', 'Nn3g16189' => 'nnu', 'Nn4g22052' => 'nnu', 'Nn7g37724' => 'nnu', 'Oeu008949.1' => 'oeu', 'Oeu040092.1' => 'oeu', 'Oeu061994.1' => 'oeu', 'Oeu062807.1' => 'oeu', 'Os02g0524600' => 'osa', 'Os02g0682500' => 'osa', 'Peaxi162Scf00827g00032' => 'pax', 'Peaxi162Scf00912g00146' => 'pax', 'PGR004G2092' => 'pgr', 'PGR042G0141' => 'pgr', 'PGR042G1329' => 'pgr', 'PGSC0003DMG400000561' => 'stu', 'PGSC0003DMG400009907' => 'stu', 'PGSC0003DMG400026477' => 'stu', 'PGSC0003DMG400044039' => 'stu', 'Phvul.001G098000' => 'pvu', 'Phvul.001G192200' => 'pvu', 'Phvul.009G044700' => 'pvu', 'Potri.002G220500' => 'ptr', 'Potri.006G209000' => 'ptr', 'Potri.012G006100' => 'ptr', 'Potri.014G140700' => 'ptr', 'Potri.015G002600' => 'ptr', 'Potri.016G075800' => 'ptr', 'Pp3c19_21960' => 'ppa', 'Pp3c19_9970' => 'ppa', 'Pp3c21_21010' => 'ppa', 'Pp3c22_18860' => 'ppa', 'PRCOL_00003467' => 'pco', 'Prupe.2G319500' => 'ppe', 'Prupe.3G315600' => 'ppe', 'Prupe.7G101800' => 'ppe', 'Psat0s126g0120' => 'psa', 'Psat3g091680' => 'psa', 'Psat5g071720' => 'psa', 'PSO017G4193' => 'pso', 'PSO063G2595' => 'pso', 'PSO478G5161' => 'pso', 'PSO782G1536' => 'pso', 'QL02p068113' => 'qlo', 'QL02p068117' => 'qlo', 'QL07p038196' => 'qlo', 'QL07p038205' => 'qlo', 'QL09p007015' => 'qlo', 'RcHm_v2.0_Chr1g0382931' => 'rch', 'RcHm_v2.0_Chr2g0176751' => 'rch', 'RcHm_v2.0_Chr3g0474771' => 'rch', 'Rhsim08G0037100' => 'rsi', 'Rhsim09G0209900' => 'rsi', 'Sabra06G0160900' => 'sbr', 'Sabra12G0003600' => 'sbr', 'Sabra12G0008100' => 'sbr', 'Sabra14G0106100' => 'sbr', 'Sabra15G0001700' => 'sbr', 'SalBow6G2567' => 'sbo', 'SalBow8G1324' => 'sbo', 'Sc03g0005430' => 'sci', 'Sc19g0000550' => 'sci', 'Sed0012223' => 'sed', 'Sed0024748' => 'sed', 'SEGI_05077' => 'sgi', 'SEGI_09231' => 'sgi', 'SEGI_36794' => 'sgi', 'SGA_v2.0_scaffold157G37430' => 'sas', 'SGA_v2.0_scaffold184G39990' => 'sas', 'SGA_v2.0_scaffold191G40445' => 'sas', 'SGA_v2.0_scaffold1G00220' => 'sas', 'SGA_v2.0_scaffold223G42829' => 'sas', 'SGA_v2.0_scaffold227G43211' => 'sas', 'SGA_v2.0_scaffold44G16850' => 'sas', 'SGA_v2.0_scaffold50G18471' => 'sas', 'SGA_v2.0_scaffold61G21131' => 'sas', 'SGA_v2.0_scaffold61G21224' => 'sas', 'SHI00495' => 'shi', 'SHI34880' => 'shi', 'SHI41362' => 'shi', 'SMO367G0275' => 'smo', 'Solyc03g081200.3' => 'sly', 'Solyc03g081210.1' => 'sly', 'Solyc03g097340.1' => 'sly', 'Solyc04g082470.3' => 'sly', 'Sopen03g021930' => 'spe', 'Sopen03g021940' => 'spe', 'Sopen03g028100' => 'spe', 'Sopen04g036080' => 'spe', 'Sp1g11480' => 'spa', 'Sp2g15760' => 'spa', 'Sp2g22830' => 'spa', 'TAR374G1109' => 'tar', 'TAR374G1430' => 'tar', 'TAR629G2325' => 'tar', 'TAR636G0637' => 'tar', 'THA.LOC104798988' => 'tha', 'THA.LOC104805293' => 'tha', 'Thecc.03G209300' => 'tca', 'Thecc.04G053000' => 'tca', 'Thecc.05G095200' => 'tca', 'Thhalv10004515m.g' => 'esa', 'Thhalv10005280m.g' => 'esa', 'Thhalv10008091m.g' => 'esa', 'TPR.G20661' => 'tpr', 'TPR.G33378' => 'tpr', 'TWI23G0637' => 'twi', 'TWI32G0051' => 'twi', 'TWI34G1897' => 'twi', 'TWI39G0792' => 'twi', 'TWI74G1122' => 'twi', 'unitig_0.g2442' => 'ugi', 'vmacro10162' => 'vma', 'vmacro22929' => 'vma', 'VMungo1309G0260' => 'vmu', 'VMungo1383G1050' => 'vmu', 'VMungo1383G1741' => 'vmu', 'Zm00001eb242340' => 'zma', 'Zm00001eb250740' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001874' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001874' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001874' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001874' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '351', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p33050' => 'bna', 'A02p40240' => 'bna', 'A02p40280' => 'bna', 'A02p40290' => 'bna', 'A06p08760' => 'bna', 'A06p35320' => 'bna', 'A09p63530' => 'bna', 'Aa31LG1G1870' => 'aar', 'Aa31LG4G17990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5657' => 'aag', 'Actinidia08700' => 'ach', 'Actinidia19539' => 'ach', 'Actinidia34272' => 'ach', 'Actinidia37704' => 'ach', 'Ah.03g136520' => 'amhyb', 'Ah.07g204410' => 'amhyb', 'AL1G24550' => 'aly', 'AL5G15480' => 'aly', 'AL6G36110' => 'aly', 'Aqoxy4G02477' => 'aox', 'Aqoxy5G02949' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4LT5BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL89FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7N93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6JJW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBX16R' => 'arhy', 'AT1G12910' => 'ath', 'AT3G26640' => 'ath', 'AT5G24520' => 'ath', 'ATR0582G331' => 'atr', 'ATR0661G240' => 'atr', 'ATR0820G133' => 'atr', 'Atru.chr12.2441' => 'acertr', 'Atru.chr12.2442' => 'acertr', 'Atru.chr6.2741' => 'acertr', 'Atru.chr8.1449' => 'acertr', 'AUR62004940' => 'cqu', 'AUR62005988' => 'cqu', 'AUR62017460' => 'cqu', 'AUR62028082' => 'cqu', 'AUR62032528' => 'cqu', 'BcaB08g34241' => 'bca', 'BcaC03g17966' => 'bca', 'BcaC04g22046' => 'bca', 'BcaNung01239' => 'bca', 'BcaNung02017' => 'bca', 'BcaNung02018' => 'bca', 'BcaNung07023' => 'bca', 'BcaNung07024' => 'bca', 'BolC1t01039H' => 'bol', 'BolC1t01040H' => 'bol', 'BolC2t12080H' => 'bol', 'BolC2t12081H' => 'bol', 'BolC5t29781H' => 'bol', 'BolC7t44845H' => 'bol', 'BolC8t49835H' => 'bol', 'BolC8t52243H' => 'bol', 'BolC9t55329H' => 'bol', 'BraA01t03427Z' => 'bra', 'BraA02t08997Z' => 'bra', 'BraA02t08998Z' => 'bra', 'BraA06t24073Z' => 'bra', 'BraA06t26458Z' => 'bra', 'BraA09t41704Z' => 'bra', 'C01p10790' => 'bna', 'C02p60240' => 'bna', 'C05p10350' => 'bna', 'C07p43200' => 'bna', 'C07p44020' => 'bna', 'C08p21990' => 'bna', 'C08p47030' => 'bna', 'CANSAT21G1359' => 'cansat', 'CANSAT64G2317' => 'cansat', 'CANSAT64G2623' => 'cansat', 'CARHR013240' => 'chi', 'CARHR013270' => 'chi', 'CARHR188910' => 'chi', 'Carub.0001s1268' => 'cru', 'Carub.0005s0465' => 'cru', 'Carub.0006s2233' => 'cru', 'Ca_08240_v3' => 'car', 'Ca_16797_v3' => 'car', 'CBR_g30801' => 'cbr', 'Cc00_g10940' => 'ccan', 'Cc00_g29750' => 'ccan', 'Cc02_g00780' => 'ccan', 'Cc07_g01410' => 'ccan', 'CDE02G0080' => 'cde', 'CDE02G0284' => 'cde', 'CDE02G2659' => 'cde', 'CDE04G3673' => 'cde', 'CDE09G0992' => 'cde', 'CDE12G0578' => 'cde', 'Cfa007129' => 'cfa', 'Cfa016644' => 'cfa', 'Cfa027113' => 'cfa', 'Ciclev10005375m.g' => 'ccl', 'Ciclev10013531m.g' => 'ccl', 'Ciclev10015815m.g' => 'ccl', 'CiPaw.03G000100' => 'cil', 'CiPaw.06G040900' => 'cil', 'CiPaw.09G017000' => 'cil', 'ClCG05G012420' => 'cla', 'ClCG10G008610' => 'cla', 'COL.COLO4_06008' => 'col', 'COL.COLO4_08136' => 'col', 'COL.COLO4_13412' => 'col', 'COL.COLO4_14375' => 'col', 'COL.COLO4_29674' => 'col', 'Cpa.g.sc3.159' => 'cpa', 'Cre16.g674000' => 'cre', 'CsaV3_3G020120' => 'csa', 'CsaV3_4G008980' => 'csa', 'CSS0004406' => 'camsi', 'CSS0042189' => 'camsi', 'CSS0049078' => 'camsi', 'DCAR_000204' => 'dca', 'DCAR_014316' => 'dca', 'DCAR_016686' => 'dca', 'DCAR_020377' => 'dca', 'Dinv17297' => 'din', 'Dinv25609' => 'din', 'Dinv29208' => 'din', 'Dinv33257' => 'din', 'Duzib068G0377' => 'dzi', 'Duzib084G0332' => 'dzi', 'Duzib093G0815' => 'dzi', 'Duzib205G0313' => 'dzi', 'Duzib212G0604' => 'dzi', 'ECA238G4071' => 'eca', 'ECA248G2430' => 'eca', 'EL10Ac3g05168' => 'bvu', 'EL10Ac6g13911' => 'bvu', 'Eucgr.A01400' => 'egr', 'Eucgr.A02633' => 'egr', 'Eucgr.I01562' => 'egr', 'FAN01G0715' => 'fan', 'FAN02G2100' => 'fan', 'FAN02G2214' => 'fan', 'FAN03G2906' => 'fan', 'FAN05G4979' => 'fan', 'FAN05G5250' => 'fan', 'FAN05G5498' => 'fan', 'FAN09G3975' => 'fan', 'FAN09G4781' => 'fan', 'FAN10G2792' => 'fan', 'FAN10G3764' => 'fan', 'FAN14G3497' => 'fan', 'FAN14G4833' => 'fan', 'FvH4_6g19450' => 'fve', 'FvH4_6g54470' => 'fve', 'FvH4_7g32970' => 'fve', 'Glyma.04G228000' => 'gma', 'Glyma.06G136900' => 'gma', 'Glyma.16G044800' => 'gma', 'Glyma.19G106900' => 'gma', 'Gohir.1Z049560' => 'ghi', 'Gohir.A03G095400' => 'ghi', 'Gohir.A04G059200' => 'ghi', 'Gohir.A08G104600' => 'ghi', 'Gohir.A10G126550' => 'ghi', 'Gohir.D02G113700' => 'ghi', 'Gohir.D04G000300' => 'ghi', 'Gohir.D04G084500' => 'ghi', 'Gohir.D08G116300' => 'ghi', 'Gohir.D10G140100' => 'ghi', 'Gorai.004G125200' => 'gra', 'Gorai.005G129400' => 'gra', 'Gorai.009G399800' => 'gra', 'Gorai.011G155800' => 'gra', 'Gorai.012G001200' => 'gra', 'GSVIVG01032940001' => 'vvi', 'GSVIVG01033890001' => 'vvi', 'GSVIVG01038651001' => 'vvi', 'HanXRQChr02g0040811' => 'han', 'HanXRQChr07g0197981' => 'han', 'HanXRQChr11g0336491' => 'han', 'HanXRQChr11g0342411' => 'han', 'HanXRQChr11g0344051' => 'han', 'HanXRQChr17g0549181' => 'han', 'Haze_00312' => 'cav', 'Haze_14992' => 'cav', 'Haze_19650' => 'cav', 'Hma1.2p1_0415F.1_g148210' => 'hma', 'Hma1.2p1_0868F.1_g230400' => 'hma', 'HPP92_023103' => 'vpl', 'Hund09718' => 'sun', 'Lalb_Chr14g0364201' => 'lal', 'Lalb_Chr23g0271951' => 'lal', 'Lalb_Chr24g0403031' => 'lal', 'Lj1g0002618' => 'lja', 'Lj1g0024135' => 'lja', 'Lj1g0026985' => 'lja', 'Lj1P1028T38' => 'lonja', 'Lj2C382T12' => 'lonja', 'Lj7P285T36' => 'lonja', 'Lj9P607T48' => 'lonja', 'Lsat_1_v5_gn_1_129320' => 'lsa', 'Lsat_1_v5_gn_2_95200' => 'lsa', 'Manes.04G096000' => 'mes', 'Manes.08G081811' => 'mes', 'Manes.09G052400' => 'mes', 'Manes.10G055500' => 'mes', 'Manes.11G072300' => 'mes', 'Mapoly0027s0005' => 'mpo', 'Mapoly0161s0021' => 'mpo', 'Mapoly0259s0004' => 'mpo', 'MBI11_g13140_MAGBIO' => 'mbi', 'MBI11_g40921_MAGBIO' => 'mbi', 'MCO14G404' => 'mco', 'MD01G1228700' => 'mdo', 'MD07G1299800' => 'mdo', 'MD09G1000600' => 'mdo', 'MD09G1142200' => 'mdo', 'MD12G1030700' => 'mdo', 'MD14G1031200' => 'mdo', 'MD17G1003400' => 'mdo', 'Medtr3g092830' => 'mtr', 'Medtr3g092840' => 'mtr', 'Medtr7g084810' => 'mtr', 'MELO3C014751.2' => 'cme', 'MELO3C018988.2' => 'cme', 'Migut.F00147' => 'egut', 'Migut.H01347' => 'egut', 'Migut.M01864' => 'egut', 'MSTRG.16270' => 'ama', 'MSTRG.26973' => 'ama', 'MSTRG.7517' => 'ama', 'MSTRG.8607' => 'ama', 'Nitab4.5_0000319g0010' => 'nta', 'Nitab4.5_0009395g0010' => 'nta', 'Nitab4.5_0015003g0010' => 'nta', 'Nn2g14222' => 'nnu', 'Nn3g16189' => 'nnu', 'Nn4g22052' => 'nnu', 'Nn7g37724' => 'nnu', 'Oeu008949.1' => 'oeu', 'Oeu040092.1' => 'oeu', 'Oeu061994.1' => 'oeu', 'Oeu062807.1' => 'oeu', 'Os02g0524600' => 'osa', 'Os02g0682500' => 'osa', 'Peaxi162Scf00827g00032' => 'pax', 'Peaxi162Scf00912g00146' => 'pax', 'PGR004G2092' => 'pgr', 'PGR042G0141' => 'pgr', 'PGR042G1329' => 'pgr', 'PGSC0003DMG400000561' => 'stu', 'PGSC0003DMG400009907' => 'stu', 'PGSC0003DMG400026477' => 'stu', 'PGSC0003DMG400044039' => 'stu', 'Phvul.001G098000' => 'pvu', 'Phvul.001G192200' => 'pvu', 'Phvul.009G044700' => 'pvu', 'Potri.002G220500' => 'ptr', 'Potri.006G209000' => 'ptr', 'Potri.012G006100' => 'ptr', 'Potri.014G140700' => 'ptr', 'Potri.015G002600' => 'ptr', 'Potri.016G075800' => 'ptr', 'Pp3c19_21960' => 'ppa', 'Pp3c19_9970' => 'ppa', 'Pp3c21_21010' => 'ppa', 'Pp3c22_18860' => 'ppa', 'PRCOL_00003467' => 'pco', 'Prupe.2G319500' => 'ppe', 'Prupe.3G315600' => 'ppe', 'Prupe.7G101800' => 'ppe', 'Psat0s126g0120' => 'psa', 'Psat3g091680' => 'psa', 'Psat5g071720' => 'psa', 'PSO017G4193' => 'pso', 'PSO063G2595' => 'pso', 'PSO478G5161' => 'pso', 'PSO782G1536' => 'pso', 'QL02p068113' => 'qlo', 'QL02p068117' => 'qlo', 'QL07p038196' => 'qlo', 'QL07p038205' => 'qlo', 'QL09p007015' => 'qlo', 'RcHm_v2.0_Chr1g0382931' => 'rch', 'RcHm_v2.0_Chr2g0176751' => 'rch', 'RcHm_v2.0_Chr3g0474771' => 'rch', 'Rhsim08G0037100' => 'rsi', 'Rhsim09G0209900' => 'rsi', 'Sabra06G0160900' => 'sbr', 'Sabra12G0003600' => 'sbr', 'Sabra12G0008100' => 'sbr', 'Sabra14G0106100' => 'sbr', 'Sabra15G0001700' => 'sbr', 'SalBow6G2567' => 'sbo', 'SalBow8G1324' => 'sbo', 'Sc03g0005430' => 'sci', 'Sc19g0000550' => 'sci', 'Sed0012223' => 'sed', 'Sed0024748' => 'sed', 'SEGI_05077' => 'sgi', 'SEGI_09231' => 'sgi', 'SEGI_36794' => 'sgi', 'SGA_v2.0_scaffold157G37430' => 'sas', 'SGA_v2.0_scaffold184G39990' => 'sas', 'SGA_v2.0_scaffold191G40445' => 'sas', 'SGA_v2.0_scaffold1G00220' => 'sas', 'SGA_v2.0_scaffold223G42829' => 'sas', 'SGA_v2.0_scaffold227G43211' => 'sas', 'SGA_v2.0_scaffold44G16850' => 'sas', 'SGA_v2.0_scaffold50G18471' => 'sas', 'SGA_v2.0_scaffold61G21131' => 'sas', 'SGA_v2.0_scaffold61G21224' => 'sas', 'SHI00495' => 'shi', 'SHI34880' => 'shi', 'SHI41362' => 'shi', 'SMO367G0275' => 'smo', 'Solyc03g081200.3' => 'sly', 'Solyc03g081210.1' => 'sly', 'Solyc03g097340.1' => 'sly', 'Solyc04g082470.3' => 'sly', 'Sopen03g021930' => 'spe', 'Sopen03g021940' => 'spe', 'Sopen03g028100' => 'spe', 'Sopen04g036080' => 'spe', 'Sp1g11480' => 'spa', 'Sp2g15760' => 'spa', 'Sp2g22830' => 'spa', 'TAR374G1109' => 'tar', 'TAR374G1430' => 'tar', 'TAR629G2325' => 'tar', 'TAR636G0637' => 'tar', 'THA.LOC104798988' => 'tha', 'THA.LOC104805293' => 'tha', 'Thecc.03G209300' => 'tca', 'Thecc.04G053000' => 'tca', 'Thecc.05G095200' => 'tca', 'Thhalv10004515m.g' => 'esa', 'Thhalv10005280m.g' => 'esa', 'Thhalv10008091m.g' => 'esa', 'TPR.G20661' => 'tpr', 'TPR.G33378' => 'tpr', 'TWI23G0637' => 'twi', 'TWI32G0051' => 'twi', 'TWI34G1897' => 'twi', 'TWI39G0792' => 'twi', 'TWI74G1122' => 'twi', 'unitig_0.g2442' => 'ugi', 'vmacro10162' => 'vma', 'vmacro22929' => 'vma', 'VMungo1309G0260' => 'vmu', 'VMungo1383G1050' => 'vmu', 'VMungo1383G1741' => 'vmu', 'Zm00001eb242340' => 'zma', 'Zm00001eb250740' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001874', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001874' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '351', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001874' ) ), 'genes' => array( 'A01p33050' => 'bna', 'A02p40240' => 'bna', 'A02p40280' => 'bna', 'A02p40290' => 'bna', 'A06p08760' => 'bna', 'A06p35320' => 'bna', 'A09p63530' => 'bna', 'Aa31LG1G1870' => 'aar', 'Aa31LG4G17990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5657' => 'aag', 'Actinidia08700' => 'ach', 'Actinidia19539' => 'ach', 'Actinidia34272' => 'ach', 'Actinidia37704' => 'ach', 'Ah.03g136520' => 'amhyb', 'Ah.07g204410' => 'amhyb', 'AL1G24550' => 'aly', 'AL5G15480' => 'aly', 'AL6G36110' => 'aly', 'Aqoxy4G02477' => 'aox', 'Aqoxy5G02949' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4LT5BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL89FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7N93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6JJW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBX16R' => 'arhy', 'AT1G12910' => 'ath', 'AT3G26640' => 'ath', 'AT5G24520' => 'ath', 'ATR0582G331' => 'atr', 'ATR0661G240' => 'atr', 'ATR0820G133' => 'atr', 'Atru.chr12.2441' => 'acertr', 'Atru.chr12.2442' => 'acertr', 'Atru.chr6.2741' => 'acertr', 'Atru.chr8.1449' => 'acertr', 'AUR62004940' => 'cqu', 'AUR62005988' => 'cqu', 'AUR62017460' => 'cqu', 'AUR62028082' => 'cqu', 'AUR62032528' => 'cqu', 'BcaB08g34241' => 'bca', 'BcaC03g17966' => 'bca', 'BcaC04g22046' => 'bca', 'BcaNung01239' => 'bca', 'BcaNung02017' => 'bca', 'BcaNung02018' => 'bca', 'BcaNung07023' => 'bca', 'BcaNung07024' => 'bca', 'BolC1t01039H' => 'bol', 'BolC1t01040H' => 'bol', 'BolC2t12080H' => 'bol', 'BolC2t12081H' => 'bol', 'BolC5t29781H' => 'bol', 'BolC7t44845H' => 'bol', 'BolC8t49835H' => 'bol', 'BolC8t52243H' => 'bol', 'BolC9t55329H' => 'bol', 'BraA01t03427Z' => 'bra', 'BraA02t08997Z' => 'bra', 'BraA02t08998Z' => 'bra', 'BraA06t24073Z' => 'bra', 'BraA06t26458Z' => 'bra', 'BraA09t41704Z' => 'bra', 'C01p10790' => 'bna', 'C02p60240' => 'bna', 'C05p10350' => 'bna', 'C07p43200' => 'bna', 'C07p44020' => 'bna', 'C08p21990' => 'bna', 'C08p47030' => 'bna', 'CANSAT21G1359' => 'cansat', 'CANSAT64G2317' => 'cansat', 'CANSAT64G2623' => 'cansat', 'CARHR013240' => 'chi', 'CARHR013270' => 'chi', 'CARHR188910' => 'chi', 'Carub.0001s1268' => 'cru', 'Carub.0005s0465' => 'cru', 'Carub.0006s2233' => 'cru', 'Ca_08240_v3' => 'car', 'Ca_16797_v3' => 'car', 'CBR_g30801' => 'cbr', 'Cc00_g10940' => 'ccan', 'Cc00_g29750' => 'ccan', 'Cc02_g00780' => 'ccan', 'Cc07_g01410' => 'ccan', 'CDE02G0080' => 'cde', 'CDE02G0284' => 'cde', 'CDE02G2659' => 'cde', 'CDE04G3673' => 'cde', 'CDE09G0992' => 'cde', 'CDE12G0578' => 'cde', 'Cfa007129' => 'cfa', 'Cfa016644' => 'cfa', 'Cfa027113' => 'cfa', 'Ciclev10005375m.g' => 'ccl', 'Ciclev10013531m.g' => 'ccl', 'Ciclev10015815m.g' => 'ccl', 'CiPaw.03G000100' => 'cil', 'CiPaw.06G040900' => 'cil', 'CiPaw.09G017000' => 'cil', 'ClCG05G012420' => 'cla', 'ClCG10G008610' => 'cla', 'COL.COLO4_06008' => 'col', 'COL.COLO4_08136' => 'col', 'COL.COLO4_13412' => 'col', 'COL.COLO4_14375' => 'col', 'COL.COLO4_29674' => 'col', 'Cpa.g.sc3.159' => 'cpa', 'Cre16.g674000' => 'cre', 'CsaV3_3G020120' => 'csa', 'CsaV3_4G008980' => 'csa', 'CSS0004406' => 'camsi', 'CSS0042189' => 'camsi', 'CSS0049078' => 'camsi', 'DCAR_000204' => 'dca', 'DCAR_014316' => 'dca', 'DCAR_016686' => 'dca', 'DCAR_020377' => 'dca', 'Dinv17297' => 'din', 'Dinv25609' => 'din', 'Dinv29208' => 'din', 'Dinv33257' => 'din', 'Duzib068G0377' => 'dzi', 'Duzib084G0332' => 'dzi', 'Duzib093G0815' => 'dzi', 'Duzib205G0313' => 'dzi', 'Duzib212G0604' => 'dzi', 'ECA238G4071' => 'eca', 'ECA248G2430' => 'eca', 'EL10Ac3g05168' => 'bvu', 'EL10Ac6g13911' => 'bvu', 'Eucgr.A01400' => 'egr', 'Eucgr.A02633' => 'egr', 'Eucgr.I01562' => 'egr', 'FAN01G0715' => 'fan', 'FAN02G2100' => 'fan', 'FAN02G2214' => 'fan', 'FAN03G2906' => 'fan', 'FAN05G4979' => 'fan', 'FAN05G5250' => 'fan', 'FAN05G5498' => 'fan', 'FAN09G3975' => 'fan', 'FAN09G4781' => 'fan', 'FAN10G2792' => 'fan', 'FAN10G3764' => 'fan', 'FAN14G3497' => 'fan', 'FAN14G4833' => 'fan', 'FvH4_6g19450' => 'fve', 'FvH4_6g54470' => 'fve', 'FvH4_7g32970' => 'fve', 'Glyma.04G228000' => 'gma', 'Glyma.06G136900' => 'gma', 'Glyma.16G044800' => 'gma', 'Glyma.19G106900' => 'gma', 'Gohir.1Z049560' => 'ghi', 'Gohir.A03G095400' => 'ghi', 'Gohir.A04G059200' => 'ghi', 'Gohir.A08G104600' => 'ghi', 'Gohir.A10G126550' => 'ghi', 'Gohir.D02G113700' => 'ghi', 'Gohir.D04G000300' => 'ghi', 'Gohir.D04G084500' => 'ghi', 'Gohir.D08G116300' => 'ghi', 'Gohir.D10G140100' => 'ghi', 'Gorai.004G125200' => 'gra', 'Gorai.005G129400' => 'gra', 'Gorai.009G399800' => 'gra', 'Gorai.011G155800' => 'gra', 'Gorai.012G001200' => 'gra', 'GSVIVG01032940001' => 'vvi', 'GSVIVG01033890001' => 'vvi', 'GSVIVG01038651001' => 'vvi', 'HanXRQChr02g0040811' => 'han', 'HanXRQChr07g0197981' => 'han', 'HanXRQChr11g0336491' => 'han', 'HanXRQChr11g0342411' => 'han', 'HanXRQChr11g0344051' => 'han', 'HanXRQChr17g0549181' => 'han', 'Haze_00312' => 'cav', 'Haze_14992' => 'cav', 'Haze_19650' => 'cav', 'Hma1.2p1_0415F.1_g148210' => 'hma', 'Hma1.2p1_0868F.1_g230400' => 'hma', 'HPP92_023103' => 'vpl', 'Hund09718' => 'sun', 'Lalb_Chr14g0364201' => 'lal', 'Lalb_Chr23g0271951' => 'lal', 'Lalb_Chr24g0403031' => 'lal', 'Lj1g0002618' => 'lja', 'Lj1g0024135' => 'lja', 'Lj1g0026985' => 'lja', 'Lj1P1028T38' => 'lonja', 'Lj2C382T12' => 'lonja', 'Lj7P285T36' => 'lonja', 'Lj9P607T48' => 'lonja', 'Lsat_1_v5_gn_1_129320' => 'lsa', 'Lsat_1_v5_gn_2_95200' => 'lsa', 'Manes.04G096000' => 'mes', 'Manes.08G081811' => 'mes', 'Manes.09G052400' => 'mes', 'Manes.10G055500' => 'mes', 'Manes.11G072300' => 'mes', 'Mapoly0027s0005' => 'mpo', 'Mapoly0161s0021' => 'mpo', 'Mapoly0259s0004' => 'mpo', 'MBI11_g13140_MAGBIO' => 'mbi', 'MBI11_g40921_MAGBIO' => 'mbi', 'MCO14G404' => 'mco', 'MD01G1228700' => 'mdo', 'MD07G1299800' => 'mdo', 'MD09G1000600' => 'mdo', 'MD09G1142200' => 'mdo', 'MD12G1030700' => 'mdo', 'MD14G1031200' => 'mdo', 'MD17G1003400' => 'mdo', 'Medtr3g092830' => 'mtr', 'Medtr3g092840' => 'mtr', 'Medtr7g084810' => 'mtr', 'MELO3C014751.2' => 'cme', 'MELO3C018988.2' => 'cme', 'Migut.F00147' => 'egut', 'Migut.H01347' => 'egut', 'Migut.M01864' => 'egut', 'MSTRG.16270' => 'ama', 'MSTRG.26973' => 'ama', 'MSTRG.7517' => 'ama', 'MSTRG.8607' => 'ama', 'Nitab4.5_0000319g0010' => 'nta', 'Nitab4.5_0009395g0010' => 'nta', 'Nitab4.5_0015003g0010' => 'nta', 'Nn2g14222' => 'nnu', 'Nn3g16189' => 'nnu', 'Nn4g22052' => 'nnu', 'Nn7g37724' => 'nnu', 'Oeu008949.1' => 'oeu', 'Oeu040092.1' => 'oeu', 'Oeu061994.1' => 'oeu', 'Oeu062807.1' => 'oeu', 'Os02g0524600' => 'osa', 'Os02g0682500' => 'osa', 'Peaxi162Scf00827g00032' => 'pax', 'Peaxi162Scf00912g00146' => 'pax', 'PGR004G2092' => 'pgr', 'PGR042G0141' => 'pgr', 'PGR042G1329' => 'pgr', 'PGSC0003DMG400000561' => 'stu', 'PGSC0003DMG400009907' => 'stu', 'PGSC0003DMG400026477' => 'stu', 'PGSC0003DMG400044039' => 'stu', 'Phvul.001G098000' => 'pvu', 'Phvul.001G192200' => 'pvu', 'Phvul.009G044700' => 'pvu', 'Potri.002G220500' => 'ptr', 'Potri.006G209000' => 'ptr', 'Potri.012G006100' => 'ptr', 'Potri.014G140700' => 'ptr', 'Potri.015G002600' => 'ptr', 'Potri.016G075800' => 'ptr', 'Pp3c19_21960' => 'ppa', 'Pp3c19_9970' => 'ppa', 'Pp3c21_21010' => 'ppa', 'Pp3c22_18860' => 'ppa', 'PRCOL_00003467' => 'pco', 'Prupe.2G319500' => 'ppe', 'Prupe.3G315600' => 'ppe', 'Prupe.7G101800' => 'ppe', 'Psat0s126g0120' => 'psa', 'Psat3g091680' => 'psa', 'Psat5g071720' => 'psa', 'PSO017G4193' => 'pso', 'PSO063G2595' => 'pso', 'PSO478G5161' => 'pso', 'PSO782G1536' => 'pso', 'QL02p068113' => 'qlo', 'QL02p068117' => 'qlo', 'QL07p038196' => 'qlo', 'QL07p038205' => 'qlo', 'QL09p007015' => 'qlo', 'RcHm_v2.0_Chr1g0382931' => 'rch', 'RcHm_v2.0_Chr2g0176751' => 'rch', 'RcHm_v2.0_Chr3g0474771' => 'rch', 'Rhsim08G0037100' => 'rsi', 'Rhsim09G0209900' => 'rsi', 'Sabra06G0160900' => 'sbr', 'Sabra12G0003600' => 'sbr', 'Sabra12G0008100' => 'sbr', 'Sabra14G0106100' => 'sbr', 'Sabra15G0001700' => 'sbr', 'SalBow6G2567' => 'sbo', 'SalBow8G1324' => 'sbo', 'Sc03g0005430' => 'sci', 'Sc19g0000550' => 'sci', 'Sed0012223' => 'sed', 'Sed0024748' => 'sed', 'SEGI_05077' => 'sgi', 'SEGI_09231' => 'sgi', 'SEGI_36794' => 'sgi', 'SGA_v2.0_scaffold157G37430' => 'sas', 'SGA_v2.0_scaffold184G39990' => 'sas', 'SGA_v2.0_scaffold191G40445' => 'sas', 'SGA_v2.0_scaffold1G00220' => 'sas', 'SGA_v2.0_scaffold223G42829' => 'sas', 'SGA_v2.0_scaffold227G43211' => 'sas', 'SGA_v2.0_scaffold44G16850' => 'sas', 'SGA_v2.0_scaffold50G18471' => 'sas', 'SGA_v2.0_scaffold61G21131' => 'sas', 'SGA_v2.0_scaffold61G21224' => 'sas', 'SHI00495' => 'shi', 'SHI34880' => 'shi', 'SHI41362' => 'shi', 'SMO367G0275' => 'smo', 'Solyc03g081200.3' => 'sly', 'Solyc03g081210.1' => 'sly', 'Solyc03g097340.1' => 'sly', 'Solyc04g082470.3' => 'sly', 'Sopen03g021930' => 'spe', 'Sopen03g021940' => 'spe', 'Sopen03g028100' => 'spe', 'Sopen04g036080' => 'spe', 'Sp1g11480' => 'spa', 'Sp2g15760' => 'spa', 'Sp2g22830' => 'spa', 'TAR374G1109' => 'tar', 'TAR374G1430' => 'tar', 'TAR629G2325' => 'tar', 'TAR636G0637' => 'tar', 'THA.LOC104798988' => 'tha', 'THA.LOC104805293' => 'tha', 'Thecc.03G209300' => 'tca', 'Thecc.04G053000' => 'tca', 'Thecc.05G095200' => 'tca', 'Thhalv10004515m.g' => 'esa', 'Thhalv10005280m.g' => 'esa', 'Thhalv10008091m.g' => 'esa', 'TPR.G20661' => 'tpr', 'TPR.G33378' => 'tpr', 'TWI23G0637' => 'twi', 'TWI32G0051' => 'twi', 'TWI34G1897' => 'twi', 'TWI39G0792' => 'twi', 'TWI74G1122' => 'twi', 'unitig_0.g2442' => 'ugi', 'vmacro10162' => 'vma', 'vmacro22929' => 'vma', 'VMungo1309G0260' => 'vmu', 'VMungo1383G1050' => 'vmu', 'VMungo1383G1741' => 'vmu', 'Zm00001eb242340' => 'zma', 'Zm00001eb250740' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001874' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001874' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001874' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001874' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '351', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p33050' => 'bna', 'A02p40240' => 'bna', 'A02p40280' => 'bna', 'A02p40290' => 'bna', 'A06p08760' => 'bna', 'A06p35320' => 'bna', 'A09p63530' => 'bna', 'Aa31LG1G1870' => 'aar', 'Aa31LG4G17990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5657' => 'aag', 'Actinidia08700' => 'ach', 'Actinidia19539' => 'ach', 'Actinidia34272' => 'ach', 'Actinidia37704' => 'ach', 'Ah.03g136520' => 'amhyb', 'Ah.07g204410' => 'amhyb', 'AL1G24550' => 'aly', 'AL5G15480' => 'aly', 'AL6G36110' => 'aly', 'Aqoxy4G02477' => 'aox', 'Aqoxy5G02949' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4LT5BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL89FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7N93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6JJW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBX16R' => 'arhy', 'AT1G12910' => 'ath', 'AT3G26640' => 'ath', 'AT5G24520' => 'ath', 'ATR0582G331' => 'atr', 'ATR0661G240' => 'atr', 'ATR0820G133' => 'atr', 'Atru.chr12.2441' => 'acertr', 'Atru.chr12.2442' => 'acertr', 'Atru.chr6.2741' => 'acertr', 'Atru.chr8.1449' => 'acertr', 'AUR62004940' => 'cqu', 'AUR62005988' => 'cqu', 'AUR62017460' => 'cqu', 'AUR62028082' => 'cqu', 'AUR62032528' => 'cqu', 'BcaB08g34241' => 'bca', 'BcaC03g17966' => 'bca', 'BcaC04g22046' => 'bca', 'BcaNung01239' => 'bca', 'BcaNung02017' => 'bca', 'BcaNung02018' => 'bca', 'BcaNung07023' => 'bca', 'BcaNung07024' => 'bca', 'BolC1t01039H' => 'bol', 'BolC1t01040H' => 'bol', 'BolC2t12080H' => 'bol', 'BolC2t12081H' => 'bol', 'BolC5t29781H' => 'bol', 'BolC7t44845H' => 'bol', 'BolC8t49835H' => 'bol', 'BolC8t52243H' => 'bol', 'BolC9t55329H' => 'bol', 'BraA01t03427Z' => 'bra', 'BraA02t08997Z' => 'bra', 'BraA02t08998Z' => 'bra', 'BraA06t24073Z' => 'bra', 'BraA06t26458Z' => 'bra', 'BraA09t41704Z' => 'bra', 'C01p10790' => 'bna', 'C02p60240' => 'bna', 'C05p10350' => 'bna', 'C07p43200' => 'bna', 'C07p44020' => 'bna', 'C08p21990' => 'bna', 'C08p47030' => 'bna', 'CANSAT21G1359' => 'cansat', 'CANSAT64G2317' => 'cansat', 'CANSAT64G2623' => 'cansat', 'CARHR013240' => 'chi', 'CARHR013270' => 'chi', 'CARHR188910' => 'chi', 'Carub.0001s1268' => 'cru', 'Carub.0005s0465' => 'cru', 'Carub.0006s2233' => 'cru', 'Ca_08240_v3' => 'car', 'Ca_16797_v3' => 'car', 'CBR_g30801' => 'cbr', 'Cc00_g10940' => 'ccan', 'Cc00_g29750' => 'ccan', 'Cc02_g00780' => 'ccan', 'Cc07_g01410' => 'ccan', 'CDE02G0080' => 'cde', 'CDE02G0284' => 'cde', 'CDE02G2659' => 'cde', 'CDE04G3673' => 'cde', 'CDE09G0992' => 'cde', 'CDE12G0578' => 'cde', 'Cfa007129' => 'cfa', 'Cfa016644' => 'cfa', 'Cfa027113' => 'cfa', 'Ciclev10005375m.g' => 'ccl', 'Ciclev10013531m.g' => 'ccl', 'Ciclev10015815m.g' => 'ccl', 'CiPaw.03G000100' => 'cil', 'CiPaw.06G040900' => 'cil', 'CiPaw.09G017000' => 'cil', 'ClCG05G012420' => 'cla', 'ClCG10G008610' => 'cla', 'COL.COLO4_06008' => 'col', 'COL.COLO4_08136' => 'col', 'COL.COLO4_13412' => 'col', 'COL.COLO4_14375' => 'col', 'COL.COLO4_29674' => 'col', 'Cpa.g.sc3.159' => 'cpa', 'Cre16.g674000' => 'cre', 'CsaV3_3G020120' => 'csa', 'CsaV3_4G008980' => 'csa', 'CSS0004406' => 'camsi', 'CSS0042189' => 'camsi', 'CSS0049078' => 'camsi', 'DCAR_000204' => 'dca', 'DCAR_014316' => 'dca', 'DCAR_016686' => 'dca', 'DCAR_020377' => 'dca', 'Dinv17297' => 'din', 'Dinv25609' => 'din', 'Dinv29208' => 'din', 'Dinv33257' => 'din', 'Duzib068G0377' => 'dzi', 'Duzib084G0332' => 'dzi', 'Duzib093G0815' => 'dzi', 'Duzib205G0313' => 'dzi', 'Duzib212G0604' => 'dzi', 'ECA238G4071' => 'eca', 'ECA248G2430' => 'eca', 'EL10Ac3g05168' => 'bvu', 'EL10Ac6g13911' => 'bvu', 'Eucgr.A01400' => 'egr', 'Eucgr.A02633' => 'egr', 'Eucgr.I01562' => 'egr', 'FAN01G0715' => 'fan', 'FAN02G2100' => 'fan', 'FAN02G2214' => 'fan', 'FAN03G2906' => 'fan', 'FAN05G4979' => 'fan', 'FAN05G5250' => 'fan', 'FAN05G5498' => 'fan', 'FAN09G3975' => 'fan', 'FAN09G4781' => 'fan', 'FAN10G2792' => 'fan', 'FAN10G3764' => 'fan', 'FAN14G3497' => 'fan', 'FAN14G4833' => 'fan', 'FvH4_6g19450' => 'fve', 'FvH4_6g54470' => 'fve', 'FvH4_7g32970' => 'fve', 'Glyma.04G228000' => 'gma', 'Glyma.06G136900' => 'gma', 'Glyma.16G044800' => 'gma', 'Glyma.19G106900' => 'gma', 'Gohir.1Z049560' => 'ghi', 'Gohir.A03G095400' => 'ghi', 'Gohir.A04G059200' => 'ghi', 'Gohir.A08G104600' => 'ghi', 'Gohir.A10G126550' => 'ghi', 'Gohir.D02G113700' => 'ghi', 'Gohir.D04G000300' => 'ghi', 'Gohir.D04G084500' => 'ghi', 'Gohir.D08G116300' => 'ghi', 'Gohir.D10G140100' => 'ghi', 'Gorai.004G125200' => 'gra', 'Gorai.005G129400' => 'gra', 'Gorai.009G399800' => 'gra', 'Gorai.011G155800' => 'gra', 'Gorai.012G001200' => 'gra', 'GSVIVG01032940001' => 'vvi', 'GSVIVG01033890001' => 'vvi', 'GSVIVG01038651001' => 'vvi', 'HanXRQChr02g0040811' => 'han', 'HanXRQChr07g0197981' => 'han', 'HanXRQChr11g0336491' => 'han', 'HanXRQChr11g0342411' => 'han', 'HanXRQChr11g0344051' => 'han', 'HanXRQChr17g0549181' => 'han', 'Haze_00312' => 'cav', 'Haze_14992' => 'cav', 'Haze_19650' => 'cav', 'Hma1.2p1_0415F.1_g148210' => 'hma', 'Hma1.2p1_0868F.1_g230400' => 'hma', 'HPP92_023103' => 'vpl', 'Hund09718' => 'sun', 'Lalb_Chr14g0364201' => 'lal', 'Lalb_Chr23g0271951' => 'lal', 'Lalb_Chr24g0403031' => 'lal', 'Lj1g0002618' => 'lja', 'Lj1g0024135' => 'lja', 'Lj1g0026985' => 'lja', 'Lj1P1028T38' => 'lonja', 'Lj2C382T12' => 'lonja', 'Lj7P285T36' => 'lonja', 'Lj9P607T48' => 'lonja', 'Lsat_1_v5_gn_1_129320' => 'lsa', 'Lsat_1_v5_gn_2_95200' => 'lsa', 'Manes.04G096000' => 'mes', 'Manes.08G081811' => 'mes', 'Manes.09G052400' => 'mes', 'Manes.10G055500' => 'mes', 'Manes.11G072300' => 'mes', 'Mapoly0027s0005' => 'mpo', 'Mapoly0161s0021' => 'mpo', 'Mapoly0259s0004' => 'mpo', 'MBI11_g13140_MAGBIO' => 'mbi', 'MBI11_g40921_MAGBIO' => 'mbi', 'MCO14G404' => 'mco', 'MD01G1228700' => 'mdo', 'MD07G1299800' => 'mdo', 'MD09G1000600' => 'mdo', 'MD09G1142200' => 'mdo', 'MD12G1030700' => 'mdo', 'MD14G1031200' => 'mdo', 'MD17G1003400' => 'mdo', 'Medtr3g092830' => 'mtr', 'Medtr3g092840' => 'mtr', 'Medtr7g084810' => 'mtr', 'MELO3C014751.2' => 'cme', 'MELO3C018988.2' => 'cme', 'Migut.F00147' => 'egut', 'Migut.H01347' => 'egut', 'Migut.M01864' => 'egut', 'MSTRG.16270' => 'ama', 'MSTRG.26973' => 'ama', 'MSTRG.7517' => 'ama', 'MSTRG.8607' => 'ama', 'Nitab4.5_0000319g0010' => 'nta', 'Nitab4.5_0009395g0010' => 'nta', 'Nitab4.5_0015003g0010' => 'nta', 'Nn2g14222' => 'nnu', 'Nn3g16189' => 'nnu', 'Nn4g22052' => 'nnu', 'Nn7g37724' => 'nnu', 'Oeu008949.1' => 'oeu', 'Oeu040092.1' => 'oeu', 'Oeu061994.1' => 'oeu', 'Oeu062807.1' => 'oeu', 'Os02g0524600' => 'osa', 'Os02g0682500' => 'osa', 'Peaxi162Scf00827g00032' => 'pax', 'Peaxi162Scf00912g00146' => 'pax', 'PGR004G2092' => 'pgr', 'PGR042G0141' => 'pgr', 'PGR042G1329' => 'pgr', 'PGSC0003DMG400000561' => 'stu', 'PGSC0003DMG400009907' => 'stu', 'PGSC0003DMG400026477' => 'stu', 'PGSC0003DMG400044039' => 'stu', 'Phvul.001G098000' => 'pvu', 'Phvul.001G192200' => 'pvu', 'Phvul.009G044700' => 'pvu', 'Potri.002G220500' => 'ptr', 'Potri.006G209000' => 'ptr', 'Potri.012G006100' => 'ptr', 'Potri.014G140700' => 'ptr', 'Potri.015G002600' => 'ptr', 'Potri.016G075800' => 'ptr', 'Pp3c19_21960' => 'ppa', 'Pp3c19_9970' => 'ppa', 'Pp3c21_21010' => 'ppa', 'Pp3c22_18860' => 'ppa', 'PRCOL_00003467' => 'pco', 'Prupe.2G319500' => 'ppe', 'Prupe.3G315600' => 'ppe', 'Prupe.7G101800' => 'ppe', 'Psat0s126g0120' => 'psa', 'Psat3g091680' => 'psa', 'Psat5g071720' => 'psa', 'PSO017G4193' => 'pso', 'PSO063G2595' => 'pso', 'PSO478G5161' => 'pso', 'PSO782G1536' => 'pso', 'QL02p068113' => 'qlo', 'QL02p068117' => 'qlo', 'QL07p038196' => 'qlo', 'QL07p038205' => 'qlo', 'QL09p007015' => 'qlo', 'RcHm_v2.0_Chr1g0382931' => 'rch', 'RcHm_v2.0_Chr2g0176751' => 'rch', 'RcHm_v2.0_Chr3g0474771' => 'rch', 'Rhsim08G0037100' => 'rsi', 'Rhsim09G0209900' => 'rsi', 'Sabra06G0160900' => 'sbr', 'Sabra12G0003600' => 'sbr', 'Sabra12G0008100' => 'sbr', 'Sabra14G0106100' => 'sbr', 'Sabra15G0001700' => 'sbr', 'SalBow6G2567' => 'sbo', 'SalBow8G1324' => 'sbo', 'Sc03g0005430' => 'sci', 'Sc19g0000550' => 'sci', 'Sed0012223' => 'sed', 'Sed0024748' => 'sed', 'SEGI_05077' => 'sgi', 'SEGI_09231' => 'sgi', 'SEGI_36794' => 'sgi', 'SGA_v2.0_scaffold157G37430' => 'sas', 'SGA_v2.0_scaffold184G39990' => 'sas', 'SGA_v2.0_scaffold191G40445' => 'sas', 'SGA_v2.0_scaffold1G00220' => 'sas', 'SGA_v2.0_scaffold223G42829' => 'sas', 'SGA_v2.0_scaffold227G43211' => 'sas', 'SGA_v2.0_scaffold44G16850' => 'sas', 'SGA_v2.0_scaffold50G18471' => 'sas', 'SGA_v2.0_scaffold61G21131' => 'sas', 'SGA_v2.0_scaffold61G21224' => 'sas', 'SHI00495' => 'shi', 'SHI34880' => 'shi', 'SHI41362' => 'shi', 'SMO367G0275' => 'smo', 'Solyc03g081200.3' => 'sly', 'Solyc03g081210.1' => 'sly', 'Solyc03g097340.1' => 'sly', 'Solyc04g082470.3' => 'sly', 'Sopen03g021930' => 'spe', 'Sopen03g021940' => 'spe', 'Sopen03g028100' => 'spe', 'Sopen04g036080' => 'spe', 'Sp1g11480' => 'spa', 'Sp2g15760' => 'spa', 'Sp2g22830' => 'spa', 'TAR374G1109' => 'tar', 'TAR374G1430' => 'tar', 'TAR629G2325' => 'tar', 'TAR636G0637' => 'tar', 'THA.LOC104798988' => 'tha', 'THA.LOC104805293' => 'tha', 'Thecc.03G209300' => 'tca', 'Thecc.04G053000' => 'tca', 'Thecc.05G095200' => 'tca', 'Thhalv10004515m.g' => 'esa', 'Thhalv10005280m.g' => 'esa', 'Thhalv10008091m.g' => 'esa', 'TPR.G20661' => 'tpr', 'TPR.G33378' => 'tpr', 'TWI23G0637' => 'twi', 'TWI32G0051' => 'twi', 'TWI34G1897' => 'twi', 'TWI39G0792' => 'twi', 'TWI74G1122' => 'twi', 'unitig_0.g2442' => 'ugi', 'vmacro10162' => 'vma', 'vmacro22929' => 'vma', 'VMungo1309G0260' => 'vmu', 'VMungo1383G1050' => 'vmu', 'VMungo1383G1741' => 'vmu', 'Zm00001eb242340' => 'zma', 'Zm00001eb250740' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001874', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001874' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '351', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001874' ) ), 'genes' => array( 'A01p33050' => 'bna', 'A02p40240' => 'bna', 'A02p40280' => 'bna', 'A02p40290' => 'bna', 'A06p08760' => 'bna', 'A06p35320' => 'bna', 'A09p63530' => 'bna', 'Aa31LG1G1870' => 'aar', 'Aa31LG4G17990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5657' => 'aag', 'Actinidia08700' => 'ach', 'Actinidia19539' => 'ach', 'Actinidia34272' => 'ach', 'Actinidia37704' => 'ach', 'Ah.03g136520' => 'amhyb', 'Ah.07g204410' => 'amhyb', 'AL1G24550' => 'aly', 'AL5G15480' => 'aly', 'AL6G36110' => 'aly', 'Aqoxy4G02477' => 'aox', 'Aqoxy5G02949' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4LT5BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL89FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7N93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6JJW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBX16R' => 'arhy', 'AT1G12910' => 'ath', 'AT3G26640' => 'ath', 'AT5G24520' => 'ath', 'ATR0582G331' => 'atr', 'ATR0661G240' => 'atr', 'ATR0820G133' => 'atr', 'Atru.chr12.2441' => 'acertr', 'Atru.chr12.2442' => 'acertr', 'Atru.chr6.2741' => 'acertr', 'Atru.chr8.1449' => 'acertr', 'AUR62004940' => 'cqu', 'AUR62005988' => 'cqu', 'AUR62017460' => 'cqu', 'AUR62028082' => 'cqu', 'AUR62032528' => 'cqu', 'BcaB08g34241' => 'bca', 'BcaC03g17966' => 'bca', 'BcaC04g22046' => 'bca', 'BcaNung01239' => 'bca', 'BcaNung02017' => 'bca', 'BcaNung02018' => 'bca', 'BcaNung07023' => 'bca', 'BcaNung07024' => 'bca', 'BolC1t01039H' => 'bol', 'BolC1t01040H' => 'bol', 'BolC2t12080H' => 'bol', 'BolC2t12081H' => 'bol', 'BolC5t29781H' => 'bol', 'BolC7t44845H' => 'bol', 'BolC8t49835H' => 'bol', 'BolC8t52243H' => 'bol', 'BolC9t55329H' => 'bol', 'BraA01t03427Z' => 'bra', 'BraA02t08997Z' => 'bra', 'BraA02t08998Z' => 'bra', 'BraA06t24073Z' => 'bra', 'BraA06t26458Z' => 'bra', 'BraA09t41704Z' => 'bra', 'C01p10790' => 'bna', 'C02p60240' => 'bna', 'C05p10350' => 'bna', 'C07p43200' => 'bna', 'C07p44020' => 'bna', 'C08p21990' => 'bna', 'C08p47030' => 'bna', 'CANSAT21G1359' => 'cansat', 'CANSAT64G2317' => 'cansat', 'CANSAT64G2623' => 'cansat', 'CARHR013240' => 'chi', 'CARHR013270' => 'chi', 'CARHR188910' => 'chi', 'Carub.0001s1268' => 'cru', 'Carub.0005s0465' => 'cru', 'Carub.0006s2233' => 'cru', 'Ca_08240_v3' => 'car', 'Ca_16797_v3' => 'car', 'CBR_g30801' => 'cbr', 'Cc00_g10940' => 'ccan', 'Cc00_g29750' => 'ccan', 'Cc02_g00780' => 'ccan', 'Cc07_g01410' => 'ccan', 'CDE02G0080' => 'cde', 'CDE02G0284' => 'cde', 'CDE02G2659' => 'cde', 'CDE04G3673' => 'cde', 'CDE09G0992' => 'cde', 'CDE12G0578' => 'cde', 'Cfa007129' => 'cfa', 'Cfa016644' => 'cfa', 'Cfa027113' => 'cfa', 'Ciclev10005375m.g' => 'ccl', 'Ciclev10013531m.g' => 'ccl', 'Ciclev10015815m.g' => 'ccl', 'CiPaw.03G000100' => 'cil', 'CiPaw.06G040900' => 'cil', 'CiPaw.09G017000' => 'cil', 'ClCG05G012420' => 'cla', 'ClCG10G008610' => 'cla', 'COL.COLO4_06008' => 'col', 'COL.COLO4_08136' => 'col', 'COL.COLO4_13412' => 'col', 'COL.COLO4_14375' => 'col', 'COL.COLO4_29674' => 'col', 'Cpa.g.sc3.159' => 'cpa', 'Cre16.g674000' => 'cre', 'CsaV3_3G020120' => 'csa', 'CsaV3_4G008980' => 'csa', 'CSS0004406' => 'camsi', 'CSS0042189' => 'camsi', 'CSS0049078' => 'camsi', 'DCAR_000204' => 'dca', 'DCAR_014316' => 'dca', 'DCAR_016686' => 'dca', 'DCAR_020377' => 'dca', 'Dinv17297' => 'din', 'Dinv25609' => 'din', 'Dinv29208' => 'din', 'Dinv33257' => 'din', 'Duzib068G0377' => 'dzi', 'Duzib084G0332' => 'dzi', 'Duzib093G0815' => 'dzi', 'Duzib205G0313' => 'dzi', 'Duzib212G0604' => 'dzi', 'ECA238G4071' => 'eca', 'ECA248G2430' => 'eca', 'EL10Ac3g05168' => 'bvu', 'EL10Ac6g13911' => 'bvu', 'Eucgr.A01400' => 'egr', 'Eucgr.A02633' => 'egr', 'Eucgr.I01562' => 'egr', 'FAN01G0715' => 'fan', 'FAN02G2100' => 'fan', 'FAN02G2214' => 'fan', 'FAN03G2906' => 'fan', 'FAN05G4979' => 'fan', 'FAN05G5250' => 'fan', 'FAN05G5498' => 'fan', 'FAN09G3975' => 'fan', 'FAN09G4781' => 'fan', 'FAN10G2792' => 'fan', 'FAN10G3764' => 'fan', 'FAN14G3497' => 'fan', 'FAN14G4833' => 'fan', 'FvH4_6g19450' => 'fve', 'FvH4_6g54470' => 'fve', 'FvH4_7g32970' => 'fve', 'Glyma.04G228000' => 'gma', 'Glyma.06G136900' => 'gma', 'Glyma.16G044800' => 'gma', 'Glyma.19G106900' => 'gma', 'Gohir.1Z049560' => 'ghi', 'Gohir.A03G095400' => 'ghi', 'Gohir.A04G059200' => 'ghi', 'Gohir.A08G104600' => 'ghi', 'Gohir.A10G126550' => 'ghi', 'Gohir.D02G113700' => 'ghi', 'Gohir.D04G000300' => 'ghi', 'Gohir.D04G084500' => 'ghi', 'Gohir.D08G116300' => 'ghi', 'Gohir.D10G140100' => 'ghi', 'Gorai.004G125200' => 'gra', 'Gorai.005G129400' => 'gra', 'Gorai.009G399800' => 'gra', 'Gorai.011G155800' => 'gra', 'Gorai.012G001200' => 'gra', 'GSVIVG01032940001' => 'vvi', 'GSVIVG01033890001' => 'vvi', 'GSVIVG01038651001' => 'vvi', 'HanXRQChr02g0040811' => 'han', 'HanXRQChr07g0197981' => 'han', 'HanXRQChr11g0336491' => 'han', 'HanXRQChr11g0342411' => 'han', 'HanXRQChr11g0344051' => 'han', 'HanXRQChr17g0549181' => 'han', 'Haze_00312' => 'cav', 'Haze_14992' => 'cav', 'Haze_19650' => 'cav', 'Hma1.2p1_0415F.1_g148210' => 'hma', 'Hma1.2p1_0868F.1_g230400' => 'hma', 'HPP92_023103' => 'vpl', 'Hund09718' => 'sun', 'Lalb_Chr14g0364201' => 'lal', 'Lalb_Chr23g0271951' => 'lal', 'Lalb_Chr24g0403031' => 'lal', 'Lj1g0002618' => 'lja', 'Lj1g0024135' => 'lja', 'Lj1g0026985' => 'lja', 'Lj1P1028T38' => 'lonja', 'Lj2C382T12' => 'lonja', 'Lj7P285T36' => 'lonja', 'Lj9P607T48' => 'lonja', 'Lsat_1_v5_gn_1_129320' => 'lsa', 'Lsat_1_v5_gn_2_95200' => 'lsa', 'Manes.04G096000' => 'mes', 'Manes.08G081811' => 'mes', 'Manes.09G052400' => 'mes', 'Manes.10G055500' => 'mes', 'Manes.11G072300' => 'mes', 'Mapoly0027s0005' => 'mpo', 'Mapoly0161s0021' => 'mpo', 'Mapoly0259s0004' => 'mpo', 'MBI11_g13140_MAGBIO' => 'mbi', 'MBI11_g40921_MAGBIO' => 'mbi', 'MCO14G404' => 'mco', 'MD01G1228700' => 'mdo', 'MD07G1299800' => 'mdo', 'MD09G1000600' => 'mdo', 'MD09G1142200' => 'mdo', 'MD12G1030700' => 'mdo', 'MD14G1031200' => 'mdo', 'MD17G1003400' => 'mdo', 'Medtr3g092830' => 'mtr', 'Medtr3g092840' => 'mtr', 'Medtr7g084810' => 'mtr', 'MELO3C014751.2' => 'cme', 'MELO3C018988.2' => 'cme', 'Migut.F00147' => 'egut', 'Migut.H01347' => 'egut', 'Migut.M01864' => 'egut', 'MSTRG.16270' => 'ama', 'MSTRG.26973' => 'ama', 'MSTRG.7517' => 'ama', 'MSTRG.8607' => 'ama', 'Nitab4.5_0000319g0010' => 'nta', 'Nitab4.5_0009395g0010' => 'nta', 'Nitab4.5_0015003g0010' => 'nta', 'Nn2g14222' => 'nnu', 'Nn3g16189' => 'nnu', 'Nn4g22052' => 'nnu', 'Nn7g37724' => 'nnu', 'Oeu008949.1' => 'oeu', 'Oeu040092.1' => 'oeu', 'Oeu061994.1' => 'oeu', 'Oeu062807.1' => 'oeu', 'Os02g0524600' => 'osa', 'Os02g0682500' => 'osa', 'Peaxi162Scf00827g00032' => 'pax', 'Peaxi162Scf00912g00146' => 'pax', 'PGR004G2092' => 'pgr', 'PGR042G0141' => 'pgr', 'PGR042G1329' => 'pgr', 'PGSC0003DMG400000561' => 'stu', 'PGSC0003DMG400009907' => 'stu', 'PGSC0003DMG400026477' => 'stu', 'PGSC0003DMG400044039' => 'stu', 'Phvul.001G098000' => 'pvu', 'Phvul.001G192200' => 'pvu', 'Phvul.009G044700' => 'pvu', 'Potri.002G220500' => 'ptr', 'Potri.006G209000' => 'ptr', 'Potri.012G006100' => 'ptr', 'Potri.014G140700' => 'ptr', 'Potri.015G002600' => 'ptr', 'Potri.016G075800' => 'ptr', 'Pp3c19_21960' => 'ppa', 'Pp3c19_9970' => 'ppa', 'Pp3c21_21010' => 'ppa', 'Pp3c22_18860' => 'ppa', 'PRCOL_00003467' => 'pco', 'Prupe.2G319500' => 'ppe', 'Prupe.3G315600' => 'ppe', 'Prupe.7G101800' => 'ppe', 'Psat0s126g0120' => 'psa', 'Psat3g091680' => 'psa', 'Psat5g071720' => 'psa', 'PSO017G4193' => 'pso', 'PSO063G2595' => 'pso', 'PSO478G5161' => 'pso', 'PSO782G1536' => 'pso', 'QL02p068113' => 'qlo', 'QL02p068117' => 'qlo', 'QL07p038196' => 'qlo', 'QL07p038205' => 'qlo', 'QL09p007015' => 'qlo', 'RcHm_v2.0_Chr1g0382931' => 'rch', 'RcHm_v2.0_Chr2g0176751' => 'rch', 'RcHm_v2.0_Chr3g0474771' => 'rch', 'Rhsim08G0037100' => 'rsi', 'Rhsim09G0209900' => 'rsi', 'Sabra06G0160900' => 'sbr', 'Sabra12G0003600' => 'sbr', 'Sabra12G0008100' => 'sbr', 'Sabra14G0106100' => 'sbr', 'Sabra15G0001700' => 'sbr', 'SalBow6G2567' => 'sbo', 'SalBow8G1324' => 'sbo', 'Sc03g0005430' => 'sci', 'Sc19g0000550' => 'sci', 'Sed0012223' => 'sed', 'Sed0024748' => 'sed', 'SEGI_05077' => 'sgi', 'SEGI_09231' => 'sgi', 'SEGI_36794' => 'sgi', 'SGA_v2.0_scaffold157G37430' => 'sas', 'SGA_v2.0_scaffold184G39990' => 'sas', 'SGA_v2.0_scaffold191G40445' => 'sas', 'SGA_v2.0_scaffold1G00220' => 'sas', 'SGA_v2.0_scaffold223G42829' => 'sas', 'SGA_v2.0_scaffold227G43211' => 'sas', 'SGA_v2.0_scaffold44G16850' => 'sas', 'SGA_v2.0_scaffold50G18471' => 'sas', 'SGA_v2.0_scaffold61G21131' => 'sas', 'SGA_v2.0_scaffold61G21224' => 'sas', 'SHI00495' => 'shi', 'SHI34880' => 'shi', 'SHI41362' => 'shi', 'SMO367G0275' => 'smo', 'Solyc03g081200.3' => 'sly', 'Solyc03g081210.1' => 'sly', 'Solyc03g097340.1' => 'sly', 'Solyc04g082470.3' => 'sly', 'Sopen03g021930' => 'spe', 'Sopen03g021940' => 'spe', 'Sopen03g028100' => 'spe', 'Sopen04g036080' => 'spe', 'Sp1g11480' => 'spa', 'Sp2g15760' => 'spa', 'Sp2g22830' => 'spa', 'TAR374G1109' => 'tar', 'TAR374G1430' => 'tar', 'TAR629G2325' => 'tar', 'TAR636G0637' => 'tar', 'THA.LOC104798988' => 'tha', 'THA.LOC104805293' => 'tha', 'Thecc.03G209300' => 'tca', 'Thecc.04G053000' => 'tca', 'Thecc.05G095200' => 'tca', 'Thhalv10004515m.g' => 'esa', 'Thhalv10005280m.g' => 'esa', 'Thhalv10008091m.g' => 'esa', 'TPR.G20661' => 'tpr', 'TPR.G33378' => 'tpr', 'TWI23G0637' => 'twi', 'TWI32G0051' => 'twi', 'TWI34G1897' => 'twi', 'TWI39G0792' => 'twi', 'TWI74G1122' => 'twi', 'unitig_0.g2442' => 'ugi', 'vmacro10162' => 'vma', 'vmacro22929' => 'vma', 'VMungo1309G0260' => 'vmu', 'VMungo1383G1050' => 'vmu', 'VMungo1383G1741' => 'vmu', 'Zm00001eb242340' => 'zma', 'Zm00001eb250740' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001874' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001874' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001874' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001874' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '351', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p33050' => 'bna', 'A02p40240' => 'bna', 'A02p40280' => 'bna', 'A02p40290' => 'bna', 'A06p08760' => 'bna', 'A06p35320' => 'bna', 'A09p63530' => 'bna', 'Aa31LG1G1870' => 'aar', 'Aa31LG4G17990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5657' => 'aag', 'Actinidia08700' => 'ach', 'Actinidia19539' => 'ach', 'Actinidia34272' => 'ach', 'Actinidia37704' => 'ach', 'Ah.03g136520' => 'amhyb', 'Ah.07g204410' => 'amhyb', 'AL1G24550' => 'aly', 'AL5G15480' => 'aly', 'AL6G36110' => 'aly', 'Aqoxy4G02477' => 'aox', 'Aqoxy5G02949' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4LT5BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL89FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7N93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6JJW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBX16R' => 'arhy', 'AT1G12910' => 'ath', 'AT3G26640' => 'ath', 'AT5G24520' => 'ath', 'ATR0582G331' => 'atr', 'ATR0661G240' => 'atr', 'ATR0820G133' => 'atr', 'Atru.chr12.2441' => 'acertr', 'Atru.chr12.2442' => 'acertr', 'Atru.chr6.2741' => 'acertr', 'Atru.chr8.1449' => 'acertr', 'AUR62004940' => 'cqu', 'AUR62005988' => 'cqu', 'AUR62017460' => 'cqu', 'AUR62028082' => 'cqu', 'AUR62032528' => 'cqu', 'BcaB08g34241' => 'bca', 'BcaC03g17966' => 'bca', 'BcaC04g22046' => 'bca', 'BcaNung01239' => 'bca', 'BcaNung02017' => 'bca', 'BcaNung02018' => 'bca', 'BcaNung07023' => 'bca', 'BcaNung07024' => 'bca', 'BolC1t01039H' => 'bol', 'BolC1t01040H' => 'bol', 'BolC2t12080H' => 'bol', 'BolC2t12081H' => 'bol', 'BolC5t29781H' => 'bol', 'BolC7t44845H' => 'bol', 'BolC8t49835H' => 'bol', 'BolC8t52243H' => 'bol', 'BolC9t55329H' => 'bol', 'BraA01t03427Z' => 'bra', 'BraA02t08997Z' => 'bra', 'BraA02t08998Z' => 'bra', 'BraA06t24073Z' => 'bra', 'BraA06t26458Z' => 'bra', 'BraA09t41704Z' => 'bra', 'C01p10790' => 'bna', 'C02p60240' => 'bna', 'C05p10350' => 'bna', 'C07p43200' => 'bna', 'C07p44020' => 'bna', 'C08p21990' => 'bna', 'C08p47030' => 'bna', 'CANSAT21G1359' => 'cansat', 'CANSAT64G2317' => 'cansat', 'CANSAT64G2623' => 'cansat', 'CARHR013240' => 'chi', 'CARHR013270' => 'chi', 'CARHR188910' => 'chi', 'Carub.0001s1268' => 'cru', 'Carub.0005s0465' => 'cru', 'Carub.0006s2233' => 'cru', 'Ca_08240_v3' => 'car', 'Ca_16797_v3' => 'car', 'CBR_g30801' => 'cbr', 'Cc00_g10940' => 'ccan', 'Cc00_g29750' => 'ccan', 'Cc02_g00780' => 'ccan', 'Cc07_g01410' => 'ccan', 'CDE02G0080' => 'cde', 'CDE02G0284' => 'cde', 'CDE02G2659' => 'cde', 'CDE04G3673' => 'cde', 'CDE09G0992' => 'cde', 'CDE12G0578' => 'cde', 'Cfa007129' => 'cfa', 'Cfa016644' => 'cfa', 'Cfa027113' => 'cfa', 'Ciclev10005375m.g' => 'ccl', 'Ciclev10013531m.g' => 'ccl', 'Ciclev10015815m.g' => 'ccl', 'CiPaw.03G000100' => 'cil', 'CiPaw.06G040900' => 'cil', 'CiPaw.09G017000' => 'cil', 'ClCG05G012420' => 'cla', 'ClCG10G008610' => 'cla', 'COL.COLO4_06008' => 'col', 'COL.COLO4_08136' => 'col', 'COL.COLO4_13412' => 'col', 'COL.COLO4_14375' => 'col', 'COL.COLO4_29674' => 'col', 'Cpa.g.sc3.159' => 'cpa', 'Cre16.g674000' => 'cre', 'CsaV3_3G020120' => 'csa', 'CsaV3_4G008980' => 'csa', 'CSS0004406' => 'camsi', 'CSS0042189' => 'camsi', 'CSS0049078' => 'camsi', 'DCAR_000204' => 'dca', 'DCAR_014316' => 'dca', 'DCAR_016686' => 'dca', 'DCAR_020377' => 'dca', 'Dinv17297' => 'din', 'Dinv25609' => 'din', 'Dinv29208' => 'din', 'Dinv33257' => 'din', 'Duzib068G0377' => 'dzi', 'Duzib084G0332' => 'dzi', 'Duzib093G0815' => 'dzi', 'Duzib205G0313' => 'dzi', 'Duzib212G0604' => 'dzi', 'ECA238G4071' => 'eca', 'ECA248G2430' => 'eca', 'EL10Ac3g05168' => 'bvu', 'EL10Ac6g13911' => 'bvu', 'Eucgr.A01400' => 'egr', 'Eucgr.A02633' => 'egr', 'Eucgr.I01562' => 'egr', 'FAN01G0715' => 'fan', 'FAN02G2100' => 'fan', 'FAN02G2214' => 'fan', 'FAN03G2906' => 'fan', 'FAN05G4979' => 'fan', 'FAN05G5250' => 'fan', 'FAN05G5498' => 'fan', 'FAN09G3975' => 'fan', 'FAN09G4781' => 'fan', 'FAN10G2792' => 'fan', 'FAN10G3764' => 'fan', 'FAN14G3497' => 'fan', 'FAN14G4833' => 'fan', 'FvH4_6g19450' => 'fve', 'FvH4_6g54470' => 'fve', 'FvH4_7g32970' => 'fve', 'Glyma.04G228000' => 'gma', 'Glyma.06G136900' => 'gma', 'Glyma.16G044800' => 'gma', 'Glyma.19G106900' => 'gma', 'Gohir.1Z049560' => 'ghi', 'Gohir.A03G095400' => 'ghi', 'Gohir.A04G059200' => 'ghi', 'Gohir.A08G104600' => 'ghi', 'Gohir.A10G126550' => 'ghi', 'Gohir.D02G113700' => 'ghi', 'Gohir.D04G000300' => 'ghi', 'Gohir.D04G084500' => 'ghi', 'Gohir.D08G116300' => 'ghi', 'Gohir.D10G140100' => 'ghi', 'Gorai.004G125200' => 'gra', 'Gorai.005G129400' => 'gra', 'Gorai.009G399800' => 'gra', 'Gorai.011G155800' => 'gra', 'Gorai.012G001200' => 'gra', 'GSVIVG01032940001' => 'vvi', 'GSVIVG01033890001' => 'vvi', 'GSVIVG01038651001' => 'vvi', 'HanXRQChr02g0040811' => 'han', 'HanXRQChr07g0197981' => 'han', 'HanXRQChr11g0336491' => 'han', 'HanXRQChr11g0342411' => 'han', 'HanXRQChr11g0344051' => 'han', 'HanXRQChr17g0549181' => 'han', 'Haze_00312' => 'cav', 'Haze_14992' => 'cav', 'Haze_19650' => 'cav', 'Hma1.2p1_0415F.1_g148210' => 'hma', 'Hma1.2p1_0868F.1_g230400' => 'hma', 'HPP92_023103' => 'vpl', 'Hund09718' => 'sun', 'Lalb_Chr14g0364201' => 'lal', 'Lalb_Chr23g0271951' => 'lal', 'Lalb_Chr24g0403031' => 'lal', 'Lj1g0002618' => 'lja', 'Lj1g0024135' => 'lja', 'Lj1g0026985' => 'lja', 'Lj1P1028T38' => 'lonja', 'Lj2C382T12' => 'lonja', 'Lj7P285T36' => 'lonja', 'Lj9P607T48' => 'lonja', 'Lsat_1_v5_gn_1_129320' => 'lsa', 'Lsat_1_v5_gn_2_95200' => 'lsa', 'Manes.04G096000' => 'mes', 'Manes.08G081811' => 'mes', 'Manes.09G052400' => 'mes', 'Manes.10G055500' => 'mes', 'Manes.11G072300' => 'mes', 'Mapoly0027s0005' => 'mpo', 'Mapoly0161s0021' => 'mpo', 'Mapoly0259s0004' => 'mpo', 'MBI11_g13140_MAGBIO' => 'mbi', 'MBI11_g40921_MAGBIO' => 'mbi', 'MCO14G404' => 'mco', 'MD01G1228700' => 'mdo', 'MD07G1299800' => 'mdo', 'MD09G1000600' => 'mdo', 'MD09G1142200' => 'mdo', 'MD12G1030700' => 'mdo', 'MD14G1031200' => 'mdo', 'MD17G1003400' => 'mdo', 'Medtr3g092830' => 'mtr', 'Medtr3g092840' => 'mtr', 'Medtr7g084810' => 'mtr', 'MELO3C014751.2' => 'cme', 'MELO3C018988.2' => 'cme', 'Migut.F00147' => 'egut', 'Migut.H01347' => 'egut', 'Migut.M01864' => 'egut', 'MSTRG.16270' => 'ama', 'MSTRG.26973' => 'ama', 'MSTRG.7517' => 'ama', 'MSTRG.8607' => 'ama', 'Nitab4.5_0000319g0010' => 'nta', 'Nitab4.5_0009395g0010' => 'nta', 'Nitab4.5_0015003g0010' => 'nta', 'Nn2g14222' => 'nnu', 'Nn3g16189' => 'nnu', 'Nn4g22052' => 'nnu', 'Nn7g37724' => 'nnu', 'Oeu008949.1' => 'oeu', 'Oeu040092.1' => 'oeu', 'Oeu061994.1' => 'oeu', 'Oeu062807.1' => 'oeu', 'Os02g0524600' => 'osa', 'Os02g0682500' => 'osa', 'Peaxi162Scf00827g00032' => 'pax', 'Peaxi162Scf00912g00146' => 'pax', 'PGR004G2092' => 'pgr', 'PGR042G0141' => 'pgr', 'PGR042G1329' => 'pgr', 'PGSC0003DMG400000561' => 'stu', 'PGSC0003DMG400009907' => 'stu', 'PGSC0003DMG400026477' => 'stu', 'PGSC0003DMG400044039' => 'stu', 'Phvul.001G098000' => 'pvu', 'Phvul.001G192200' => 'pvu', 'Phvul.009G044700' => 'pvu', 'Potri.002G220500' => 'ptr', 'Potri.006G209000' => 'ptr', 'Potri.012G006100' => 'ptr', 'Potri.014G140700' => 'ptr', 'Potri.015G002600' => 'ptr', 'Potri.016G075800' => 'ptr', 'Pp3c19_21960' => 'ppa', 'Pp3c19_9970' => 'ppa', 'Pp3c21_21010' => 'ppa', 'Pp3c22_18860' => 'ppa', 'PRCOL_00003467' => 'pco', 'Prupe.2G319500' => 'ppe', 'Prupe.3G315600' => 'ppe', 'Prupe.7G101800' => 'ppe', 'Psat0s126g0120' => 'psa', 'Psat3g091680' => 'psa', 'Psat5g071720' => 'psa', 'PSO017G4193' => 'pso', 'PSO063G2595' => 'pso', 'PSO478G5161' => 'pso', 'PSO782G1536' => 'pso', 'QL02p068113' => 'qlo', 'QL02p068117' => 'qlo', 'QL07p038196' => 'qlo', 'QL07p038205' => 'qlo', 'QL09p007015' => 'qlo', 'RcHm_v2.0_Chr1g0382931' => 'rch', 'RcHm_v2.0_Chr2g0176751' => 'rch', 'RcHm_v2.0_Chr3g0474771' => 'rch', 'Rhsim08G0037100' => 'rsi', 'Rhsim09G0209900' => 'rsi', 'Sabra06G0160900' => 'sbr', 'Sabra12G0003600' => 'sbr', 'Sabra12G0008100' => 'sbr', 'Sabra14G0106100' => 'sbr', 'Sabra15G0001700' => 'sbr', 'SalBow6G2567' => 'sbo', 'SalBow8G1324' => 'sbo', 'Sc03g0005430' => 'sci', 'Sc19g0000550' => 'sci', 'Sed0012223' => 'sed', 'Sed0024748' => 'sed', 'SEGI_05077' => 'sgi', 'SEGI_09231' => 'sgi', 'SEGI_36794' => 'sgi', 'SGA_v2.0_scaffold157G37430' => 'sas', 'SGA_v2.0_scaffold184G39990' => 'sas', 'SGA_v2.0_scaffold191G40445' => 'sas', 'SGA_v2.0_scaffold1G00220' => 'sas', 'SGA_v2.0_scaffold223G42829' => 'sas', 'SGA_v2.0_scaffold227G43211' => 'sas', 'SGA_v2.0_scaffold44G16850' => 'sas', 'SGA_v2.0_scaffold50G18471' => 'sas', 'SGA_v2.0_scaffold61G21131' => 'sas', 'SGA_v2.0_scaffold61G21224' => 'sas', 'SHI00495' => 'shi', 'SHI34880' => 'shi', 'SHI41362' => 'shi', 'SMO367G0275' => 'smo', 'Solyc03g081200.3' => 'sly', 'Solyc03g081210.1' => 'sly', 'Solyc03g097340.1' => 'sly', 'Solyc04g082470.3' => 'sly', 'Sopen03g021930' => 'spe', 'Sopen03g021940' => 'spe', 'Sopen03g028100' => 'spe', 'Sopen04g036080' => 'spe', 'Sp1g11480' => 'spa', 'Sp2g15760' => 'spa', 'Sp2g22830' => 'spa', 'TAR374G1109' => 'tar', 'TAR374G1430' => 'tar', 'TAR629G2325' => 'tar', 'TAR636G0637' => 'tar', 'THA.LOC104798988' => 'tha', 'THA.LOC104805293' => 'tha', 'Thecc.03G209300' => 'tca', 'Thecc.04G053000' => 'tca', 'Thecc.05G095200' => 'tca', 'Thhalv10004515m.g' => 'esa', 'Thhalv10005280m.g' => 'esa', 'Thhalv10008091m.g' => 'esa', 'TPR.G20661' => 'tpr', 'TPR.G33378' => 'tpr', 'TWI23G0637' => 'twi', 'TWI32G0051' => 'twi', 'TWI34G1897' => 'twi', 'TWI39G0792' => 'twi', 'TWI74G1122' => 'twi', 'unitig_0.g2442' => 'ugi', 'vmacro10162' => 'vma', 'vmacro22929' => 'vma', 'VMungo1309G0260' => 'vmu', 'VMungo1383G1050' => 'vmu', 'VMungo1383G1741' => 'vmu', 'Zm00001eb242340' => 'zma', 'Zm00001eb250740' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001874', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001874' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '351', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001874' ) ), 'genes' => array( 'A01p33050' => 'bna', 'A02p40240' => 'bna', 'A02p40280' => 'bna', 'A02p40290' => 'bna', 'A06p08760' => 'bna', 'A06p35320' => 'bna', 'A09p63530' => 'bna', 'Aa31LG1G1870' => 'aar', 'Aa31LG4G17990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5657' => 'aag', 'Actinidia08700' => 'ach', 'Actinidia19539' => 'ach', 'Actinidia34272' => 'ach', 'Actinidia37704' => 'ach', 'Ah.03g136520' => 'amhyb', 'Ah.07g204410' => 'amhyb', 'AL1G24550' => 'aly', 'AL5G15480' => 'aly', 'AL6G36110' => 'aly', 'Aqoxy4G02477' => 'aox', 'Aqoxy5G02949' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4LT5BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL89FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7N93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6JJW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBX16R' => 'arhy', 'AT1G12910' => 'ath', 'AT3G26640' => 'ath', 'AT5G24520' => 'ath', 'ATR0582G331' => 'atr', 'ATR0661G240' => 'atr', 'ATR0820G133' => 'atr', 'Atru.chr12.2441' => 'acertr', 'Atru.chr12.2442' => 'acertr', 'Atru.chr6.2741' => 'acertr', 'Atru.chr8.1449' => 'acertr', 'AUR62004940' => 'cqu', 'AUR62005988' => 'cqu', 'AUR62017460' => 'cqu', 'AUR62028082' => 'cqu', 'AUR62032528' => 'cqu', 'BcaB08g34241' => 'bca', 'BcaC03g17966' => 'bca', 'BcaC04g22046' => 'bca', 'BcaNung01239' => 'bca', 'BcaNung02017' => 'bca', 'BcaNung02018' => 'bca', 'BcaNung07023' => 'bca', 'BcaNung07024' => 'bca', 'BolC1t01039H' => 'bol', 'BolC1t01040H' => 'bol', 'BolC2t12080H' => 'bol', 'BolC2t12081H' => 'bol', 'BolC5t29781H' => 'bol', 'BolC7t44845H' => 'bol', 'BolC8t49835H' => 'bol', 'BolC8t52243H' => 'bol', 'BolC9t55329H' => 'bol', 'BraA01t03427Z' => 'bra', 'BraA02t08997Z' => 'bra', 'BraA02t08998Z' => 'bra', 'BraA06t24073Z' => 'bra', 'BraA06t26458Z' => 'bra', 'BraA09t41704Z' => 'bra', 'C01p10790' => 'bna', 'C02p60240' => 'bna', 'C05p10350' => 'bna', 'C07p43200' => 'bna', 'C07p44020' => 'bna', 'C08p21990' => 'bna', 'C08p47030' => 'bna', 'CANSAT21G1359' => 'cansat', 'CANSAT64G2317' => 'cansat', 'CANSAT64G2623' => 'cansat', 'CARHR013240' => 'chi', 'CARHR013270' => 'chi', 'CARHR188910' => 'chi', 'Carub.0001s1268' => 'cru', 'Carub.0005s0465' => 'cru', 'Carub.0006s2233' => 'cru', 'Ca_08240_v3' => 'car', 'Ca_16797_v3' => 'car', 'CBR_g30801' => 'cbr', 'Cc00_g10940' => 'ccan', 'Cc00_g29750' => 'ccan', 'Cc02_g00780' => 'ccan', 'Cc07_g01410' => 'ccan', 'CDE02G0080' => 'cde', 'CDE02G0284' => 'cde', 'CDE02G2659' => 'cde', 'CDE04G3673' => 'cde', 'CDE09G0992' => 'cde', 'CDE12G0578' => 'cde', 'Cfa007129' => 'cfa', 'Cfa016644' => 'cfa', 'Cfa027113' => 'cfa', 'Ciclev10005375m.g' => 'ccl', 'Ciclev10013531m.g' => 'ccl', 'Ciclev10015815m.g' => 'ccl', 'CiPaw.03G000100' => 'cil', 'CiPaw.06G040900' => 'cil', 'CiPaw.09G017000' => 'cil', 'ClCG05G012420' => 'cla', 'ClCG10G008610' => 'cla', 'COL.COLO4_06008' => 'col', 'COL.COLO4_08136' => 'col', 'COL.COLO4_13412' => 'col', 'COL.COLO4_14375' => 'col', 'COL.COLO4_29674' => 'col', 'Cpa.g.sc3.159' => 'cpa', 'Cre16.g674000' => 'cre', 'CsaV3_3G020120' => 'csa', 'CsaV3_4G008980' => 'csa', 'CSS0004406' => 'camsi', 'CSS0042189' => 'camsi', 'CSS0049078' => 'camsi', 'DCAR_000204' => 'dca', 'DCAR_014316' => 'dca', 'DCAR_016686' => 'dca', 'DCAR_020377' => 'dca', 'Dinv17297' => 'din', 'Dinv25609' => 'din', 'Dinv29208' => 'din', 'Dinv33257' => 'din', 'Duzib068G0377' => 'dzi', 'Duzib084G0332' => 'dzi', 'Duzib093G0815' => 'dzi', 'Duzib205G0313' => 'dzi', 'Duzib212G0604' => 'dzi', 'ECA238G4071' => 'eca', 'ECA248G2430' => 'eca', 'EL10Ac3g05168' => 'bvu', 'EL10Ac6g13911' => 'bvu', 'Eucgr.A01400' => 'egr', 'Eucgr.A02633' => 'egr', 'Eucgr.I01562' => 'egr', 'FAN01G0715' => 'fan', 'FAN02G2100' => 'fan', 'FAN02G2214' => 'fan', 'FAN03G2906' => 'fan', 'FAN05G4979' => 'fan', 'FAN05G5250' => 'fan', 'FAN05G5498' => 'fan', 'FAN09G3975' => 'fan', 'FAN09G4781' => 'fan', 'FAN10G2792' => 'fan', 'FAN10G3764' => 'fan', 'FAN14G3497' => 'fan', 'FAN14G4833' => 'fan', 'FvH4_6g19450' => 'fve', 'FvH4_6g54470' => 'fve', 'FvH4_7g32970' => 'fve', 'Glyma.04G228000' => 'gma', 'Glyma.06G136900' => 'gma', 'Glyma.16G044800' => 'gma', 'Glyma.19G106900' => 'gma', 'Gohir.1Z049560' => 'ghi', 'Gohir.A03G095400' => 'ghi', 'Gohir.A04G059200' => 'ghi', 'Gohir.A08G104600' => 'ghi', 'Gohir.A10G126550' => 'ghi', 'Gohir.D02G113700' => 'ghi', 'Gohir.D04G000300' => 'ghi', 'Gohir.D04G084500' => 'ghi', 'Gohir.D08G116300' => 'ghi', 'Gohir.D10G140100' => 'ghi', 'Gorai.004G125200' => 'gra', 'Gorai.005G129400' => 'gra', 'Gorai.009G399800' => 'gra', 'Gorai.011G155800' => 'gra', 'Gorai.012G001200' => 'gra', 'GSVIVG01032940001' => 'vvi', 'GSVIVG01033890001' => 'vvi', 'GSVIVG01038651001' => 'vvi', 'HanXRQChr02g0040811' => 'han', 'HanXRQChr07g0197981' => 'han', 'HanXRQChr11g0336491' => 'han', 'HanXRQChr11g0342411' => 'han', 'HanXRQChr11g0344051' => 'han', 'HanXRQChr17g0549181' => 'han', 'Haze_00312' => 'cav', 'Haze_14992' => 'cav', 'Haze_19650' => 'cav', 'Hma1.2p1_0415F.1_g148210' => 'hma', 'Hma1.2p1_0868F.1_g230400' => 'hma', 'HPP92_023103' => 'vpl', 'Hund09718' => 'sun', 'Lalb_Chr14g0364201' => 'lal', 'Lalb_Chr23g0271951' => 'lal', 'Lalb_Chr24g0403031' => 'lal', 'Lj1g0002618' => 'lja', 'Lj1g0024135' => 'lja', 'Lj1g0026985' => 'lja', 'Lj1P1028T38' => 'lonja', 'Lj2C382T12' => 'lonja', 'Lj7P285T36' => 'lonja', 'Lj9P607T48' => 'lonja', 'Lsat_1_v5_gn_1_129320' => 'lsa', 'Lsat_1_v5_gn_2_95200' => 'lsa', 'Manes.04G096000' => 'mes', 'Manes.08G081811' => 'mes', 'Manes.09G052400' => 'mes', 'Manes.10G055500' => 'mes', 'Manes.11G072300' => 'mes', 'Mapoly0027s0005' => 'mpo', 'Mapoly0161s0021' => 'mpo', 'Mapoly0259s0004' => 'mpo', 'MBI11_g13140_MAGBIO' => 'mbi', 'MBI11_g40921_MAGBIO' => 'mbi', 'MCO14G404' => 'mco', 'MD01G1228700' => 'mdo', 'MD07G1299800' => 'mdo', 'MD09G1000600' => 'mdo', 'MD09G1142200' => 'mdo', 'MD12G1030700' => 'mdo', 'MD14G1031200' => 'mdo', 'MD17G1003400' => 'mdo', 'Medtr3g092830' => 'mtr', 'Medtr3g092840' => 'mtr', 'Medtr7g084810' => 'mtr', 'MELO3C014751.2' => 'cme', 'MELO3C018988.2' => 'cme', 'Migut.F00147' => 'egut', 'Migut.H01347' => 'egut', 'Migut.M01864' => 'egut', 'MSTRG.16270' => 'ama', 'MSTRG.26973' => 'ama', 'MSTRG.7517' => 'ama', 'MSTRG.8607' => 'ama', 'Nitab4.5_0000319g0010' => 'nta', 'Nitab4.5_0009395g0010' => 'nta', 'Nitab4.5_0015003g0010' => 'nta', 'Nn2g14222' => 'nnu', 'Nn3g16189' => 'nnu', 'Nn4g22052' => 'nnu', 'Nn7g37724' => 'nnu', 'Oeu008949.1' => 'oeu', 'Oeu040092.1' => 'oeu', 'Oeu061994.1' => 'oeu', 'Oeu062807.1' => 'oeu', 'Os02g0524600' => 'osa', 'Os02g0682500' => 'osa', 'Peaxi162Scf00827g00032' => 'pax', 'Peaxi162Scf00912g00146' => 'pax', 'PGR004G2092' => 'pgr', 'PGR042G0141' => 'pgr', 'PGR042G1329' => 'pgr', 'PGSC0003DMG400000561' => 'stu', 'PGSC0003DMG400009907' => 'stu', 'PGSC0003DMG400026477' => 'stu', 'PGSC0003DMG400044039' => 'stu', 'Phvul.001G098000' => 'pvu', 'Phvul.001G192200' => 'pvu', 'Phvul.009G044700' => 'pvu', 'Potri.002G220500' => 'ptr', 'Potri.006G209000' => 'ptr', 'Potri.012G006100' => 'ptr', 'Potri.014G140700' => 'ptr', 'Potri.015G002600' => 'ptr', 'Potri.016G075800' => 'ptr', 'Pp3c19_21960' => 'ppa', 'Pp3c19_9970' => 'ppa', 'Pp3c21_21010' => 'ppa', 'Pp3c22_18860' => 'ppa', 'PRCOL_00003467' => 'pco', 'Prupe.2G319500' => 'ppe', 'Prupe.3G315600' => 'ppe', 'Prupe.7G101800' => 'ppe', 'Psat0s126g0120' => 'psa', 'Psat3g091680' => 'psa', 'Psat5g071720' => 'psa', 'PSO017G4193' => 'pso', 'PSO063G2595' => 'pso', 'PSO478G5161' => 'pso', 'PSO782G1536' => 'pso', 'QL02p068113' => 'qlo', 'QL02p068117' => 'qlo', 'QL07p038196' => 'qlo', 'QL07p038205' => 'qlo', 'QL09p007015' => 'qlo', 'RcHm_v2.0_Chr1g0382931' => 'rch', 'RcHm_v2.0_Chr2g0176751' => 'rch', 'RcHm_v2.0_Chr3g0474771' => 'rch', 'Rhsim08G0037100' => 'rsi', 'Rhsim09G0209900' => 'rsi', 'Sabra06G0160900' => 'sbr', 'Sabra12G0003600' => 'sbr', 'Sabra12G0008100' => 'sbr', 'Sabra14G0106100' => 'sbr', 'Sabra15G0001700' => 'sbr', 'SalBow6G2567' => 'sbo', 'SalBow8G1324' => 'sbo', 'Sc03g0005430' => 'sci', 'Sc19g0000550' => 'sci', 'Sed0012223' => 'sed', 'Sed0024748' => 'sed', 'SEGI_05077' => 'sgi', 'SEGI_09231' => 'sgi', 'SEGI_36794' => 'sgi', 'SGA_v2.0_scaffold157G37430' => 'sas', 'SGA_v2.0_scaffold184G39990' => 'sas', 'SGA_v2.0_scaffold191G40445' => 'sas', 'SGA_v2.0_scaffold1G00220' => 'sas', 'SGA_v2.0_scaffold223G42829' => 'sas', 'SGA_v2.0_scaffold227G43211' => 'sas', 'SGA_v2.0_scaffold44G16850' => 'sas', 'SGA_v2.0_scaffold50G18471' => 'sas', 'SGA_v2.0_scaffold61G21131' => 'sas', 'SGA_v2.0_scaffold61G21224' => 'sas', 'SHI00495' => 'shi', 'SHI34880' => 'shi', 'SHI41362' => 'shi', 'SMO367G0275' => 'smo', 'Solyc03g081200.3' => 'sly', 'Solyc03g081210.1' => 'sly', 'Solyc03g097340.1' => 'sly', 'Solyc04g082470.3' => 'sly', 'Sopen03g021930' => 'spe', 'Sopen03g021940' => 'spe', 'Sopen03g028100' => 'spe', 'Sopen04g036080' => 'spe', 'Sp1g11480' => 'spa', 'Sp2g15760' => 'spa', 'Sp2g22830' => 'spa', 'TAR374G1109' => 'tar', 'TAR374G1430' => 'tar', 'TAR629G2325' => 'tar', 'TAR636G0637' => 'tar', 'THA.LOC104798988' => 'tha', 'THA.LOC104805293' => 'tha', 'Thecc.03G209300' => 'tca', 'Thecc.04G053000' => 'tca', 'Thecc.05G095200' => 'tca', 'Thhalv10004515m.g' => 'esa', 'Thhalv10005280m.g' => 'esa', 'Thhalv10008091m.g' => 'esa', 'TPR.G20661' => 'tpr', 'TPR.G33378' => 'tpr', 'TWI23G0637' => 'twi', 'TWI32G0051' => 'twi', 'TWI34G1897' => 'twi', 'TWI39G0792' => 'twi', 'TWI74G1122' => 'twi', 'unitig_0.g2442' => 'ugi', 'vmacro10162' => 'vma', 'vmacro22929' => 'vma', 'VMungo1309G0260' => 'vmu', 'VMungo1383G1050' => 'vmu', 'VMungo1383G1741' => 'vmu', 'Zm00001eb242340' => 'zma', 'Zm00001eb250740' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001874' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001874' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001874' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001874' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151