Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001868', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '352', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p09860' => 'bna', 'A05p26380' => 'bna', 'A05p27240' => 'bna', 'A07p01500' => 'bna', 'Aa31LG8G8070' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3176' => 'aag', 'Actinidia13683' => 'ach', 'Actinidia14842' => 'ach', 'Actinidia16607' => 'ach', 'Actinidia32100' => 'ach', 'Actinidia38401' => 'ach', 'Ah.01g022100' => 'amhyb', 'Ah.01g022130' => 'amhyb', 'AL3G35430' => 'aly', 'Aqoxy3G03877' => 'aox', 'Aqoxy5G00470' => 'aox', 'Aqoxy7G03934' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5H969I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20K5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2FDBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENMN1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H3WDBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1LRBA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R322MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TE5PEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1UUGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9WMHM' => 'arhy', 'AT3G21360' => 'ath', 'ATR0705G178' => 'atr', 'ATR1136G032' => 'atr', 'ATR1136G086' => 'atr', 'ATR1136G094' => 'atr', 'ATR1136G104' => 'atr', 'ATR1136G123' => 'atr', 'ATR1136G189' => 'atr', 'ATR1136G196' => 'atr', 'ATR1136G210' => 'atr', 'ATR1136G214' => 'atr', 'ATR1136G219' => 'atr', 'Atru.chr11.1375' => 'acertr', 'Atru.chr11.1376' => 'acertr', 'Atru.chr11.1377' => 'acertr', 'Atru.chr11.1378' => 'acertr', 'AUR62022211' => 'cqu', 'AUR62031925' => 'cqu', 'BcaB06g26234' => 'bca', 'BcaC05g28171' => 'bca', 'BolC5t32938H' => 'bol', 'BraA04t18026Z' => 'bra', 'BraA05t21512Z' => 'bra', 'BraA05t21613Z' => 'bra', 'C05p42080' => 'bna', 'C08p18970' => 'bna', 'C09p61870' => 'bna', 'CAN.G1143.15' => 'can', 'CAN.G184.75' => 'can', 'CANSAT56G0768' => 'cansat', 'CANSAT64G1424' => 'cansat', 'CARHR097310' => 'chi', 'Carub.0003s2141' => 'cru', 'Ca_01166_v3' => 'car', 'Ca_05067_v3' => 'car', 'Cc04_g02530' => 'ccan', 'Cc11_g10740' => 'ccan', 'CDE05G1609' => 'cde', 'Cfa003643' => 'cfa', 'Cfa003645' => 'cfa', 'Cfa018646' => 'cfa', 'Cfa018647' => 'cfa', 'Cfa018685' => 'cfa', 'Ciclev10025881m.g' => 'ccl', 'Ciclev10026083m.g' => 'ccl', 'Ciclev10033372m.g' => 'ccl', 'CiPaw.01G231200' => 'cil', 'CiPaw.02G145700' => 'cil', 'CiPaw.15G002400' => 'cil', 'ClCG01G005750' => 'cla', 'ClCG09G000230' => 'cla', 'COL.COLO4_07856' => 'col', 'COL.COLO4_30516' => 'col', 'Cpa.g.sc1.233' => 'cpa', 'Cpa.g.sc25.16' => 'cpa', 'CsaV3_5G028940' => 'csa', 'CsaV3_7G035260' => 'csa', 'CSS0004774' => 'camsi', 'CSS0020354' => 'camsi', 'CSS0026529' => 'camsi', 'CSS0041135' => 'camsi', 'CSS0043311' => 'camsi', 'DCAR_023692' => 'dca', 'DCAR_026353' => 'dca', 'Dinv16519' => 'din', 'Dinv16520' => 'din', 'Dinv16521' => 'din', 'Dinv37975' => 'din', 'Duzib235G0857' => 'dzi', 'Duzib248G0276' => 'dzi', 'Duzib251G0347' => 'dzi', 'ECA232G1666' => 'eca', 'ECA232G1795' => 'eca', 'ECA232G1884' => 'eca', 'ECA232G2480' => 'eca', 'ECA232G3373' => 'eca', 'ECA232G3703' => 'eca', 'ECA232G5045' => 'eca', 'ECA234G4751' => 'eca', 'ECA246G4861' => 'eca', 'ECA247G1336' => 'eca', 'ECA247G1926' => 'eca', 'ECA248G1773' => 'eca', 'ECA248G2019' => 'eca', 'EL10Ac9g21201' => 'bvu', 'Eucgr.B03062' => 'egr', 'Eucgr.B03063' => 'egr', 'Eucgr.J02936' => 'egr', 'FAN02G0984' => 'fan', 'FAN05G0641' => 'fan', 'FAN07G0238' => 'fan', 'FAN09G3289' => 'fan', 'FAN12G1827' => 'fan', 'FAN14G0299' => 'fan', 'FAN17G2056' => 'fan', 'FAN22G1034' => 'fan', 'FvH4_4g28230' => 'fve', 'FvH4_6g32420' => 'fve', 'Glyma.01G089800' => 'gma', 'Glyma.02G101400' => 'gma', 'Glyma.15G019700' => 'gma', 'Gohir.A06G189700' => 'ghi', 'Gohir.A12G172200' => 'ghi', 'Gohir.D06G198100' => 'ghi', 'Gohir.D12G174600' => 'ghi', 'Gorai.008G187300' => 'gra', 'Gorai.010G230900' => 'gra', 'Gorai.010G231000' => 'gra', 'GSVIVG01011970001' => 'vvi', 'GSVIVG01016977001' => 'vvi', 'GSVIVG01016978001' => 'vvi', 'HanXRQChr05g0139171' => 'han', 'HanXRQChr05g0139181' => 'han', 'HanXRQChr05g0162581' => 'han', 'HanXRQChr08g0227201' => 'han', 'HanXRQChr09g0275611' => 'han', 'HanXRQChr09g0275621' => 'han', 'HanXRQChr09g0275631' => 'han', 'HanXRQChr09g0275641' => 'han', 'HanXRQChr09g0275651' => 'han', 'HanXRQChr09g0276271' => 'han', 'HanXRQChr10g0280781' => 'han', 'HanXRQChr10g0280841' => 'han', 'HanXRQChr10g0280871' => 'han', 'HanXRQChr15g0472091' => 'han', 'HanXRQChr15g0476021' => 'han', 'Haze_15851' => 'cav', 'Haze_17422' => 'cav', 'Haze_17423' => 'cav', 'Hma1.2p1_0430F.1_g151380' => 'hma', 'Hma1.2p1_0605F.1_g187840' => 'hma', 'Hma1.2p1_1207F.1_g267023' => 'hma', 'Hma1.2p1_1207F.1_g267026' => 'hma', 'HPP92_003620' => 'vpl', 'HPP92_004471' => 'vpl', 'HPP92_004472' => 'vpl', 'HPP92_004473' => 'vpl', 'HPP92_004474' => 'vpl', 'HPP92_004482' => 'vpl', 'HPP92_004483' => 'vpl', 'HPP92_004484' => 'vpl', 'HPP92_005416' => 'vpl', 'Hund00695' => 'sun', 'Lalb_Chr22g0351561' => 'lal', 'Lj2g0012278' => 'lja', 'Lj3A1021T35' => 'lonja', 'Lj3g0017675' => 'lja', 'Lj9A513G54' => 'lonja', 'Lsat_1_v5_gn_0_20960' => 'lsa', 'Lsat_1_v5_gn_1_118801' => 'lsa', 'Lsat_1_v5_gn_1_119000' => 'lsa', 'Lsat_1_v5_gn_1_119060' => 'lsa', 'Lsat_1_v5_gn_1_36780' => 'lsa', 'Lsat_1_v5_gn_3_57321' => 'lsa', 'Lsat_1_v5_gn_3_57360' => 'lsa', 'Lsat_1_v5_gn_4_87081' => 'lsa', 'Lsat_1_v5_gn_4_97380' => 'lsa', 'Lsat_1_v5_gn_4_97640' => 'lsa', 'Lsat_1_v5_gn_4_98661' => 'lsa', 'Lsat_1_v5_gn_4_98761' => 'lsa', 'Lsat_1_v5_gn_4_98781' => 'lsa', 'Lsat_1_v5_gn_4_98941' => 'lsa', 'Lsat_1_v5_gn_4_99021' => 'lsa', 'Lsat_1_v5_gn_4_99241' => 'lsa', 'Lsat_1_v5_gn_4_99281' => 'lsa', 'Lsat_1_v5_gn_4_99301' => 'lsa', 'Manes.06G073700' => 'mes', 'Manes.06G073800' => 'mes', 'Manes.11G033300' => 'mes', 'Manes.14G096400' => 'mes', 'Mapoly0024s0085' => 'mpo', 'Mapoly0064s0118' => 'mpo', 'Mapoly0070s0057' => 'mpo', 'MBI04_g20308_MAGBIO' => 'mbi', 'MBI04_g37503_MAGBIO' => 'mbi', 'MBI06_g35219_MAGBIO' => 'mbi', 'MBI06_g35221_MAGBIO' => 'mbi', 'MBI06_g39484_MAGBIO' => 'mbi', 'MBI06_g42849_MAGBIO' => 'mbi', 'MCO10G227' => 'mco', 'MD09G1202600' => 'mdo', 'MD10G1294600' => 'mdo', 'MD10G1294700' => 'mdo', 'MD13G1048200' => 'mdo', 'MD13G1048300' => 'mdo', 'MD17G1183800' => 'mdo', 'Medtr0021s0370' => 'mtr', 'Medtr0681s0020' => 'mtr', 'Medtr2g100850' => 'mtr', 'MELO3C005355.2' => 'cme', 'MELO3C024436.2' => 'cme', 'Migut.D01564' => 'egut', 'Migut.I00895' => 'egut', 'Migut.L01104' => 'egut', 'MSTRG.22637' => 'ama', 'Nitab4.5_0004705g0060' => 'nta', 'Nitab4.5_0004969g0010' => 'nta', 'Nitab4.5_0008646g0020' => 'nta', 'Nitab4.5_0009780g0030' => 'nta', 'Nn5g27565' => 'nnu', 'Nn6g35324' => 'nnu', 'Oeu017123.1' => 'oeu', 'Oeu024106.1' => 'oeu', 'Oeu026774.1' => 'oeu', 'Os01g0190000' => 'osa', 'Os08g0383800' => 'osa', 'Peaxi162Scf00038g01029' => 'pax', 'Peaxi162Scf00367g00738' => 'pax', 'PGR102G1579' => 'pgr', 'PGR102G2805' => 'pgr', 'PGSC0003DMG400000821' => 'stu', 'PGSC0003DMG400002609' => 'stu', 'Phvul.003G025800' => 'pvu', 'Phvul.005G166000' => 'pvu', 'Potri.001G190100' => 'ptr', 'Potri.010G131200' => 'ptr', 'Potri.010G131300' => 'ptr', 'Pp3c15_16500' => 'ppa', 'Prupe.1G303900' => 'ppe', 'Prupe.3G058800' => 'ppe', 'Psat0s308g0040' => 'psa', 'Psat5g295640' => 'psa', 'PSO210G1329' => 'pso', 'PSO210G2028' => 'pso', 'PSO210G3782' => 'pso', 'QL01p000968' => 'qlo', 'QL01p000982' => 'qlo', 'QL05p019843' => 'qlo', 'QL05p019867' => 'qlo', 'QL05p019896' => 'qlo', 'RcHm_v2.0_Chr2g0115841' => 'rch', 'RcHm_v2.0_Chr2g0140561' => 'rch', 'RcHm_v2.0_Chr2g0140571' => 'rch', 'RcHm_v2.0_Chr4g0436031' => 'rch', 'Rhsim08G0227800' => 'rsi', 'Rhsim09G0113500' => 'rsi', 'Rhsim09G0113700' => 'rsi', 'Sabra01G0151700' => 'sbr', 'Sabra10G0100000' => 'sbr', 'Sabra10G0100100' => 'sbr', 'Sabra10G0100200' => 'sbr', 'Sabra17G0067300' => 'sbr', 'SalBow1G0023' => 'sbo', 'SalBow1G1703' => 'sbo', 'SalBow1G3178' => 'sbo', 'SalBow1G5885' => 'sbo', 'SalBow1G6692' => 'sbo', 'SalBow2G3054' => 'sbo', 'SalBow8G5517' => 'sbo', 'Sc15g0001870' => 'sci', 'Sed0019394' => 'sed', 'Sed0020302' => 'sed', 'SEGI_05826' => 'sgi', 'SEGI_06969' => 'sgi', 'SEGI_07621' => 'sgi', 'SEGI_09785' => 'sgi', 'SEGI_10179' => 'sgi', 'SEGI_14098' => 'sgi', 'SEGI_14308' => 'sgi', 'SEGI_14853' => 'sgi', 'SEGI_16411' => 'sgi', 'SEGI_16437' => 'sgi', 'SEGI_17272' => 'sgi', 'SEGI_18305' => 'sgi', 'SEGI_23127' => 'sgi', 'SEGI_23539' => 'sgi', 'SEGI_24620' => 'sgi', 'SEGI_24732' => 'sgi', 'SEGI_25628' => 'sgi', 'SEGI_25841' => 'sgi', 'SEGI_25991' => 'sgi', 'SEGI_30406' => 'sgi', 'SEGI_31636' => 'sgi', 'SEGI_33028' => 'sgi', 'SEGI_33247' => 'sgi', 'SEGI_35478' => 'sgi', 'SEGI_36061' => 'sgi', 'SEGI_37115' => 'sgi', 'SEGI_38242' => 'sgi', 'SEGI_40244' => 'sgi', 'SEGI_40880' => 'sgi', 'SGA_v2.0_scaffold66G22527' => 'sas', 'SMO118G0386' => 'smo', 'SMO128G0017' => 'smo', 'SMO143G0039' => 'smo', 'SMO143G0067' => 'smo', 'SMO143G0211' => 'smo', 'SMO301G0080' => 'smo', 'SMO351G0199' => 'smo', 'SMO351G0264' => 'smo', 'SMO367G0671' => 'smo', 'SMO367G0819' => 'smo', 'SMO367G1157' => 'smo', 'SMO367G1169' => 'smo', 'Solyc03g121040.4' => 'sly', 'Solyc05g009960.4' => 'sly', 'Sopen03g039870' => 'spe', 'Sopen05g005770' => 'spe', 'Sp3g19420' => 'spa', 'TAR376G0448' => 'tar', 'TAR376G1089' => 'tar', 'TAR383G0498' => 'tar', 'TAR383G0540' => 'tar', 'TAR383G0797' => 'tar', 'TAR628G0198' => 'tar', 'THA.LOC104810545' => 'tha', 'Thecc.02G362800' => 'tca', 'Thecc.06G100300' => 'tca', 'Thhalv10021117m.g' => 'esa', 'TPR.G2681' => 'tpr', 'TPR.G6535' => 'tpr', 'TWI12G1086' => 'twi', 'TWI75G0766' => 'twi', 'TWI75G1022' => 'twi', 'unitig_32.g10988' => 'ugi', 'vmacro10517' => 'vma', 'vmacro10518' => 'vma', 'vmacro10519' => 'vma', 'vmacro10520' => 'vma', 'vmacro18850' => 'vma', 'VMungo1080G0805' => 'vmu', 'VMungo1215G3053' => 'vmu', 'Zm00001eb121420' => 'zma', 'Zm00001eb121460' => 'zma', 'Zm00001eb178510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001868', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001868' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001868', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '352', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001868' ) ), 'genes' => array( 'A03p09860' => 'bna', 'A05p26380' => 'bna', 'A05p27240' => 'bna', 'A07p01500' => 'bna', 'Aa31LG8G8070' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3176' => 'aag', 'Actinidia13683' => 'ach', 'Actinidia14842' => 'ach', 'Actinidia16607' => 'ach', 'Actinidia32100' => 'ach', 'Actinidia38401' => 'ach', 'Ah.01g022100' => 'amhyb', 'Ah.01g022130' => 'amhyb', 'AL3G35430' => 'aly', 'Aqoxy3G03877' => 'aox', 'Aqoxy5G00470' => 'aox', 'Aqoxy7G03934' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5H969I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20K5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2FDBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENMN1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H3WDBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1LRBA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R322MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TE5PEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1UUGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9WMHM' => 'arhy', 'AT3G21360' => 'ath', 'ATR0705G178' => 'atr', 'ATR1136G032' => 'atr', 'ATR1136G086' => 'atr', 'ATR1136G094' => 'atr', 'ATR1136G104' => 'atr', 'ATR1136G123' => 'atr', 'ATR1136G189' => 'atr', 'ATR1136G196' => 'atr', 'ATR1136G210' => 'atr', 'ATR1136G214' => 'atr', 'ATR1136G219' => 'atr', 'Atru.chr11.1375' => 'acertr', 'Atru.chr11.1376' => 'acertr', 'Atru.chr11.1377' => 'acertr', 'Atru.chr11.1378' => 'acertr', 'AUR62022211' => 'cqu', 'AUR62031925' => 'cqu', 'BcaB06g26234' => 'bca', 'BcaC05g28171' => 'bca', 'BolC5t32938H' => 'bol', 'BraA04t18026Z' => 'bra', 'BraA05t21512Z' => 'bra', 'BraA05t21613Z' => 'bra', 'C05p42080' => 'bna', 'C08p18970' => 'bna', 'C09p61870' => 'bna', 'CAN.G1143.15' => 'can', 'CAN.G184.75' => 'can', 'CANSAT56G0768' => 'cansat', 'CANSAT64G1424' => 'cansat', 'CARHR097310' => 'chi', 'Carub.0003s2141' => 'cru', 'Ca_01166_v3' => 'car', 'Ca_05067_v3' => 'car', 'Cc04_g02530' => 'ccan', 'Cc11_g10740' => 'ccan', 'CDE05G1609' => 'cde', 'Cfa003643' => 'cfa', 'Cfa003645' => 'cfa', 'Cfa018646' => 'cfa', 'Cfa018647' => 'cfa', 'Cfa018685' => 'cfa', 'Ciclev10025881m.g' => 'ccl', 'Ciclev10026083m.g' => 'ccl', 'Ciclev10033372m.g' => 'ccl', 'CiPaw.01G231200' => 'cil', 'CiPaw.02G145700' => 'cil', 'CiPaw.15G002400' => 'cil', 'ClCG01G005750' => 'cla', 'ClCG09G000230' => 'cla', 'COL.COLO4_07856' => 'col', 'COL.COLO4_30516' => 'col', 'Cpa.g.sc1.233' => 'cpa', 'Cpa.g.sc25.16' => 'cpa', 'CsaV3_5G028940' => 'csa', 'CsaV3_7G035260' => 'csa', 'CSS0004774' => 'camsi', 'CSS0020354' => 'camsi', 'CSS0026529' => 'camsi', 'CSS0041135' => 'camsi', 'CSS0043311' => 'camsi', 'DCAR_023692' => 'dca', 'DCAR_026353' => 'dca', 'Dinv16519' => 'din', 'Dinv16520' => 'din', 'Dinv16521' => 'din', 'Dinv37975' => 'din', 'Duzib235G0857' => 'dzi', 'Duzib248G0276' => 'dzi', 'Duzib251G0347' => 'dzi', 'ECA232G1666' => 'eca', 'ECA232G1795' => 'eca', 'ECA232G1884' => 'eca', 'ECA232G2480' => 'eca', 'ECA232G3373' => 'eca', 'ECA232G3703' => 'eca', 'ECA232G5045' => 'eca', 'ECA234G4751' => 'eca', 'ECA246G4861' => 'eca', 'ECA247G1336' => 'eca', 'ECA247G1926' => 'eca', 'ECA248G1773' => 'eca', 'ECA248G2019' => 'eca', 'EL10Ac9g21201' => 'bvu', 'Eucgr.B03062' => 'egr', 'Eucgr.B03063' => 'egr', 'Eucgr.J02936' => 'egr', 'FAN02G0984' => 'fan', 'FAN05G0641' => 'fan', 'FAN07G0238' => 'fan', 'FAN09G3289' => 'fan', 'FAN12G1827' => 'fan', 'FAN14G0299' => 'fan', 'FAN17G2056' => 'fan', 'FAN22G1034' => 'fan', 'FvH4_4g28230' => 'fve', 'FvH4_6g32420' => 'fve', 'Glyma.01G089800' => 'gma', 'Glyma.02G101400' => 'gma', 'Glyma.15G019700' => 'gma', 'Gohir.A06G189700' => 'ghi', 'Gohir.A12G172200' => 'ghi', 'Gohir.D06G198100' => 'ghi', 'Gohir.D12G174600' => 'ghi', 'Gorai.008G187300' => 'gra', 'Gorai.010G230900' => 'gra', 'Gorai.010G231000' => 'gra', 'GSVIVG01011970001' => 'vvi', 'GSVIVG01016977001' => 'vvi', 'GSVIVG01016978001' => 'vvi', 'HanXRQChr05g0139171' => 'han', 'HanXRQChr05g0139181' => 'han', 'HanXRQChr05g0162581' => 'han', 'HanXRQChr08g0227201' => 'han', 'HanXRQChr09g0275611' => 'han', 'HanXRQChr09g0275621' => 'han', 'HanXRQChr09g0275631' => 'han', 'HanXRQChr09g0275641' => 'han', 'HanXRQChr09g0275651' => 'han', 'HanXRQChr09g0276271' => 'han', 'HanXRQChr10g0280781' => 'han', 'HanXRQChr10g0280841' => 'han', 'HanXRQChr10g0280871' => 'han', 'HanXRQChr15g0472091' => 'han', 'HanXRQChr15g0476021' => 'han', 'Haze_15851' => 'cav', 'Haze_17422' => 'cav', 'Haze_17423' => 'cav', 'Hma1.2p1_0430F.1_g151380' => 'hma', 'Hma1.2p1_0605F.1_g187840' => 'hma', 'Hma1.2p1_1207F.1_g267023' => 'hma', 'Hma1.2p1_1207F.1_g267026' => 'hma', 'HPP92_003620' => 'vpl', 'HPP92_004471' => 'vpl', 'HPP92_004472' => 'vpl', 'HPP92_004473' => 'vpl', 'HPP92_004474' => 'vpl', 'HPP92_004482' => 'vpl', 'HPP92_004483' => 'vpl', 'HPP92_004484' => 'vpl', 'HPP92_005416' => 'vpl', 'Hund00695' => 'sun', 'Lalb_Chr22g0351561' => 'lal', 'Lj2g0012278' => 'lja', 'Lj3A1021T35' => 'lonja', 'Lj3g0017675' => 'lja', 'Lj9A513G54' => 'lonja', 'Lsat_1_v5_gn_0_20960' => 'lsa', 'Lsat_1_v5_gn_1_118801' => 'lsa', 'Lsat_1_v5_gn_1_119000' => 'lsa', 'Lsat_1_v5_gn_1_119060' => 'lsa', 'Lsat_1_v5_gn_1_36780' => 'lsa', 'Lsat_1_v5_gn_3_57321' => 'lsa', 'Lsat_1_v5_gn_3_57360' => 'lsa', 'Lsat_1_v5_gn_4_87081' => 'lsa', 'Lsat_1_v5_gn_4_97380' => 'lsa', 'Lsat_1_v5_gn_4_97640' => 'lsa', 'Lsat_1_v5_gn_4_98661' => 'lsa', 'Lsat_1_v5_gn_4_98761' => 'lsa', 'Lsat_1_v5_gn_4_98781' => 'lsa', 'Lsat_1_v5_gn_4_98941' => 'lsa', 'Lsat_1_v5_gn_4_99021' => 'lsa', 'Lsat_1_v5_gn_4_99241' => 'lsa', 'Lsat_1_v5_gn_4_99281' => 'lsa', 'Lsat_1_v5_gn_4_99301' => 'lsa', 'Manes.06G073700' => 'mes', 'Manes.06G073800' => 'mes', 'Manes.11G033300' => 'mes', 'Manes.14G096400' => 'mes', 'Mapoly0024s0085' => 'mpo', 'Mapoly0064s0118' => 'mpo', 'Mapoly0070s0057' => 'mpo', 'MBI04_g20308_MAGBIO' => 'mbi', 'MBI04_g37503_MAGBIO' => 'mbi', 'MBI06_g35219_MAGBIO' => 'mbi', 'MBI06_g35221_MAGBIO' => 'mbi', 'MBI06_g39484_MAGBIO' => 'mbi', 'MBI06_g42849_MAGBIO' => 'mbi', 'MCO10G227' => 'mco', 'MD09G1202600' => 'mdo', 'MD10G1294600' => 'mdo', 'MD10G1294700' => 'mdo', 'MD13G1048200' => 'mdo', 'MD13G1048300' => 'mdo', 'MD17G1183800' => 'mdo', 'Medtr0021s0370' => 'mtr', 'Medtr0681s0020' => 'mtr', 'Medtr2g100850' => 'mtr', 'MELO3C005355.2' => 'cme', 'MELO3C024436.2' => 'cme', 'Migut.D01564' => 'egut', 'Migut.I00895' => 'egut', 'Migut.L01104' => 'egut', 'MSTRG.22637' => 'ama', 'Nitab4.5_0004705g0060' => 'nta', 'Nitab4.5_0004969g0010' => 'nta', 'Nitab4.5_0008646g0020' => 'nta', 'Nitab4.5_0009780g0030' => 'nta', 'Nn5g27565' => 'nnu', 'Nn6g35324' => 'nnu', 'Oeu017123.1' => 'oeu', 'Oeu024106.1' => 'oeu', 'Oeu026774.1' => 'oeu', 'Os01g0190000' => 'osa', 'Os08g0383800' => 'osa', 'Peaxi162Scf00038g01029' => 'pax', 'Peaxi162Scf00367g00738' => 'pax', 'PGR102G1579' => 'pgr', 'PGR102G2805' => 'pgr', 'PGSC0003DMG400000821' => 'stu', 'PGSC0003DMG400002609' => 'stu', 'Phvul.003G025800' => 'pvu', 'Phvul.005G166000' => 'pvu', 'Potri.001G190100' => 'ptr', 'Potri.010G131200' => 'ptr', 'Potri.010G131300' => 'ptr', 'Pp3c15_16500' => 'ppa', 'Prupe.1G303900' => 'ppe', 'Prupe.3G058800' => 'ppe', 'Psat0s308g0040' => 'psa', 'Psat5g295640' => 'psa', 'PSO210G1329' => 'pso', 'PSO210G2028' => 'pso', 'PSO210G3782' => 'pso', 'QL01p000968' => 'qlo', 'QL01p000982' => 'qlo', 'QL05p019843' => 'qlo', 'QL05p019867' => 'qlo', 'QL05p019896' => 'qlo', 'RcHm_v2.0_Chr2g0115841' => 'rch', 'RcHm_v2.0_Chr2g0140561' => 'rch', 'RcHm_v2.0_Chr2g0140571' => 'rch', 'RcHm_v2.0_Chr4g0436031' => 'rch', 'Rhsim08G0227800' => 'rsi', 'Rhsim09G0113500' => 'rsi', 'Rhsim09G0113700' => 'rsi', 'Sabra01G0151700' => 'sbr', 'Sabra10G0100000' => 'sbr', 'Sabra10G0100100' => 'sbr', 'Sabra10G0100200' => 'sbr', 'Sabra17G0067300' => 'sbr', 'SalBow1G0023' => 'sbo', 'SalBow1G1703' => 'sbo', 'SalBow1G3178' => 'sbo', 'SalBow1G5885' => 'sbo', 'SalBow1G6692' => 'sbo', 'SalBow2G3054' => 'sbo', 'SalBow8G5517' => 'sbo', 'Sc15g0001870' => 'sci', 'Sed0019394' => 'sed', 'Sed0020302' => 'sed', 'SEGI_05826' => 'sgi', 'SEGI_06969' => 'sgi', 'SEGI_07621' => 'sgi', 'SEGI_09785' => 'sgi', 'SEGI_10179' => 'sgi', 'SEGI_14098' => 'sgi', 'SEGI_14308' => 'sgi', 'SEGI_14853' => 'sgi', 'SEGI_16411' => 'sgi', 'SEGI_16437' => 'sgi', 'SEGI_17272' => 'sgi', 'SEGI_18305' => 'sgi', 'SEGI_23127' => 'sgi', 'SEGI_23539' => 'sgi', 'SEGI_24620' => 'sgi', 'SEGI_24732' => 'sgi', 'SEGI_25628' => 'sgi', 'SEGI_25841' => 'sgi', 'SEGI_25991' => 'sgi', 'SEGI_30406' => 'sgi', 'SEGI_31636' => 'sgi', 'SEGI_33028' => 'sgi', 'SEGI_33247' => 'sgi', 'SEGI_35478' => 'sgi', 'SEGI_36061' => 'sgi', 'SEGI_37115' => 'sgi', 'SEGI_38242' => 'sgi', 'SEGI_40244' => 'sgi', 'SEGI_40880' => 'sgi', 'SGA_v2.0_scaffold66G22527' => 'sas', 'SMO118G0386' => 'smo', 'SMO128G0017' => 'smo', 'SMO143G0039' => 'smo', 'SMO143G0067' => 'smo', 'SMO143G0211' => 'smo', 'SMO301G0080' => 'smo', 'SMO351G0199' => 'smo', 'SMO351G0264' => 'smo', 'SMO367G0671' => 'smo', 'SMO367G0819' => 'smo', 'SMO367G1157' => 'smo', 'SMO367G1169' => 'smo', 'Solyc03g121040.4' => 'sly', 'Solyc05g009960.4' => 'sly', 'Sopen03g039870' => 'spe', 'Sopen05g005770' => 'spe', 'Sp3g19420' => 'spa', 'TAR376G0448' => 'tar', 'TAR376G1089' => 'tar', 'TAR383G0498' => 'tar', 'TAR383G0540' => 'tar', 'TAR383G0797' => 'tar', 'TAR628G0198' => 'tar', 'THA.LOC104810545' => 'tha', 'Thecc.02G362800' => 'tca', 'Thecc.06G100300' => 'tca', 'Thhalv10021117m.g' => 'esa', 'TPR.G2681' => 'tpr', 'TPR.G6535' => 'tpr', 'TWI12G1086' => 'twi', 'TWI75G0766' => 'twi', 'TWI75G1022' => 'twi', 'unitig_32.g10988' => 'ugi', 'vmacro10517' => 'vma', 'vmacro10518' => 'vma', 'vmacro10519' => 'vma', 'vmacro10520' => 'vma', 'vmacro18850' => 'vma', 'VMungo1080G0805' => 'vmu', 'VMungo1215G3053' => 'vmu', 'Zm00001eb121420' => 'zma', 'Zm00001eb121460' => 'zma', 'Zm00001eb178510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001868' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001868' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001868' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001868' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001868', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '352', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p09860' => 'bna', 'A05p26380' => 'bna', 'A05p27240' => 'bna', 'A07p01500' => 'bna', 'Aa31LG8G8070' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3176' => 'aag', 'Actinidia13683' => 'ach', 'Actinidia14842' => 'ach', 'Actinidia16607' => 'ach', 'Actinidia32100' => 'ach', 'Actinidia38401' => 'ach', 'Ah.01g022100' => 'amhyb', 'Ah.01g022130' => 'amhyb', 'AL3G35430' => 'aly', 'Aqoxy3G03877' => 'aox', 'Aqoxy5G00470' => 'aox', 'Aqoxy7G03934' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5H969I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20K5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2FDBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENMN1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H3WDBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1LRBA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R322MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TE5PEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1UUGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9WMHM' => 'arhy', 'AT3G21360' => 'ath', 'ATR0705G178' => 'atr', 'ATR1136G032' => 'atr', 'ATR1136G086' => 'atr', 'ATR1136G094' => 'atr', 'ATR1136G104' => 'atr', 'ATR1136G123' => 'atr', 'ATR1136G189' => 'atr', 'ATR1136G196' => 'atr', 'ATR1136G210' => 'atr', 'ATR1136G214' => 'atr', 'ATR1136G219' => 'atr', 'Atru.chr11.1375' => 'acertr', 'Atru.chr11.1376' => 'acertr', 'Atru.chr11.1377' => 'acertr', 'Atru.chr11.1378' => 'acertr', 'AUR62022211' => 'cqu', 'AUR62031925' => 'cqu', 'BcaB06g26234' => 'bca', 'BcaC05g28171' => 'bca', 'BolC5t32938H' => 'bol', 'BraA04t18026Z' => 'bra', 'BraA05t21512Z' => 'bra', 'BraA05t21613Z' => 'bra', 'C05p42080' => 'bna', 'C08p18970' => 'bna', 'C09p61870' => 'bna', 'CAN.G1143.15' => 'can', 'CAN.G184.75' => 'can', 'CANSAT56G0768' => 'cansat', 'CANSAT64G1424' => 'cansat', 'CARHR097310' => 'chi', 'Carub.0003s2141' => 'cru', 'Ca_01166_v3' => 'car', 'Ca_05067_v3' => 'car', 'Cc04_g02530' => 'ccan', 'Cc11_g10740' => 'ccan', 'CDE05G1609' => 'cde', 'Cfa003643' => 'cfa', 'Cfa003645' => 'cfa', 'Cfa018646' => 'cfa', 'Cfa018647' => 'cfa', 'Cfa018685' => 'cfa', 'Ciclev10025881m.g' => 'ccl', 'Ciclev10026083m.g' => 'ccl', 'Ciclev10033372m.g' => 'ccl', 'CiPaw.01G231200' => 'cil', 'CiPaw.02G145700' => 'cil', 'CiPaw.15G002400' => 'cil', 'ClCG01G005750' => 'cla', 'ClCG09G000230' => 'cla', 'COL.COLO4_07856' => 'col', 'COL.COLO4_30516' => 'col', 'Cpa.g.sc1.233' => 'cpa', 'Cpa.g.sc25.16' => 'cpa', 'CsaV3_5G028940' => 'csa', 'CsaV3_7G035260' => 'csa', 'CSS0004774' => 'camsi', 'CSS0020354' => 'camsi', 'CSS0026529' => 'camsi', 'CSS0041135' => 'camsi', 'CSS0043311' => 'camsi', 'DCAR_023692' => 'dca', 'DCAR_026353' => 'dca', 'Dinv16519' => 'din', 'Dinv16520' => 'din', 'Dinv16521' => 'din', 'Dinv37975' => 'din', 'Duzib235G0857' => 'dzi', 'Duzib248G0276' => 'dzi', 'Duzib251G0347' => 'dzi', 'ECA232G1666' => 'eca', 'ECA232G1795' => 'eca', 'ECA232G1884' => 'eca', 'ECA232G2480' => 'eca', 'ECA232G3373' => 'eca', 'ECA232G3703' => 'eca', 'ECA232G5045' => 'eca', 'ECA234G4751' => 'eca', 'ECA246G4861' => 'eca', 'ECA247G1336' => 'eca', 'ECA247G1926' => 'eca', 'ECA248G1773' => 'eca', 'ECA248G2019' => 'eca', 'EL10Ac9g21201' => 'bvu', 'Eucgr.B03062' => 'egr', 'Eucgr.B03063' => 'egr', 'Eucgr.J02936' => 'egr', 'FAN02G0984' => 'fan', 'FAN05G0641' => 'fan', 'FAN07G0238' => 'fan', 'FAN09G3289' => 'fan', 'FAN12G1827' => 'fan', 'FAN14G0299' => 'fan', 'FAN17G2056' => 'fan', 'FAN22G1034' => 'fan', 'FvH4_4g28230' => 'fve', 'FvH4_6g32420' => 'fve', 'Glyma.01G089800' => 'gma', 'Glyma.02G101400' => 'gma', 'Glyma.15G019700' => 'gma', 'Gohir.A06G189700' => 'ghi', 'Gohir.A12G172200' => 'ghi', 'Gohir.D06G198100' => 'ghi', 'Gohir.D12G174600' => 'ghi', 'Gorai.008G187300' => 'gra', 'Gorai.010G230900' => 'gra', 'Gorai.010G231000' => 'gra', 'GSVIVG01011970001' => 'vvi', 'GSVIVG01016977001' => 'vvi', 'GSVIVG01016978001' => 'vvi', 'HanXRQChr05g0139171' => 'han', 'HanXRQChr05g0139181' => 'han', 'HanXRQChr05g0162581' => 'han', 'HanXRQChr08g0227201' => 'han', 'HanXRQChr09g0275611' => 'han', 'HanXRQChr09g0275621' => 'han', 'HanXRQChr09g0275631' => 'han', 'HanXRQChr09g0275641' => 'han', 'HanXRQChr09g0275651' => 'han', 'HanXRQChr09g0276271' => 'han', 'HanXRQChr10g0280781' => 'han', 'HanXRQChr10g0280841' => 'han', 'HanXRQChr10g0280871' => 'han', 'HanXRQChr15g0472091' => 'han', 'HanXRQChr15g0476021' => 'han', 'Haze_15851' => 'cav', 'Haze_17422' => 'cav', 'Haze_17423' => 'cav', 'Hma1.2p1_0430F.1_g151380' => 'hma', 'Hma1.2p1_0605F.1_g187840' => 'hma', 'Hma1.2p1_1207F.1_g267023' => 'hma', 'Hma1.2p1_1207F.1_g267026' => 'hma', 'HPP92_003620' => 'vpl', 'HPP92_004471' => 'vpl', 'HPP92_004472' => 'vpl', 'HPP92_004473' => 'vpl', 'HPP92_004474' => 'vpl', 'HPP92_004482' => 'vpl', 'HPP92_004483' => 'vpl', 'HPP92_004484' => 'vpl', 'HPP92_005416' => 'vpl', 'Hund00695' => 'sun', 'Lalb_Chr22g0351561' => 'lal', 'Lj2g0012278' => 'lja', 'Lj3A1021T35' => 'lonja', 'Lj3g0017675' => 'lja', 'Lj9A513G54' => 'lonja', 'Lsat_1_v5_gn_0_20960' => 'lsa', 'Lsat_1_v5_gn_1_118801' => 'lsa', 'Lsat_1_v5_gn_1_119000' => 'lsa', 'Lsat_1_v5_gn_1_119060' => 'lsa', 'Lsat_1_v5_gn_1_36780' => 'lsa', 'Lsat_1_v5_gn_3_57321' => 'lsa', 'Lsat_1_v5_gn_3_57360' => 'lsa', 'Lsat_1_v5_gn_4_87081' => 'lsa', 'Lsat_1_v5_gn_4_97380' => 'lsa', 'Lsat_1_v5_gn_4_97640' => 'lsa', 'Lsat_1_v5_gn_4_98661' => 'lsa', 'Lsat_1_v5_gn_4_98761' => 'lsa', 'Lsat_1_v5_gn_4_98781' => 'lsa', 'Lsat_1_v5_gn_4_98941' => 'lsa', 'Lsat_1_v5_gn_4_99021' => 'lsa', 'Lsat_1_v5_gn_4_99241' => 'lsa', 'Lsat_1_v5_gn_4_99281' => 'lsa', 'Lsat_1_v5_gn_4_99301' => 'lsa', 'Manes.06G073700' => 'mes', 'Manes.06G073800' => 'mes', 'Manes.11G033300' => 'mes', 'Manes.14G096400' => 'mes', 'Mapoly0024s0085' => 'mpo', 'Mapoly0064s0118' => 'mpo', 'Mapoly0070s0057' => 'mpo', 'MBI04_g20308_MAGBIO' => 'mbi', 'MBI04_g37503_MAGBIO' => 'mbi', 'MBI06_g35219_MAGBIO' => 'mbi', 'MBI06_g35221_MAGBIO' => 'mbi', 'MBI06_g39484_MAGBIO' => 'mbi', 'MBI06_g42849_MAGBIO' => 'mbi', 'MCO10G227' => 'mco', 'MD09G1202600' => 'mdo', 'MD10G1294600' => 'mdo', 'MD10G1294700' => 'mdo', 'MD13G1048200' => 'mdo', 'MD13G1048300' => 'mdo', 'MD17G1183800' => 'mdo', 'Medtr0021s0370' => 'mtr', 'Medtr0681s0020' => 'mtr', 'Medtr2g100850' => 'mtr', 'MELO3C005355.2' => 'cme', 'MELO3C024436.2' => 'cme', 'Migut.D01564' => 'egut', 'Migut.I00895' => 'egut', 'Migut.L01104' => 'egut', 'MSTRG.22637' => 'ama', 'Nitab4.5_0004705g0060' => 'nta', 'Nitab4.5_0004969g0010' => 'nta', 'Nitab4.5_0008646g0020' => 'nta', 'Nitab4.5_0009780g0030' => 'nta', 'Nn5g27565' => 'nnu', 'Nn6g35324' => 'nnu', 'Oeu017123.1' => 'oeu', 'Oeu024106.1' => 'oeu', 'Oeu026774.1' => 'oeu', 'Os01g0190000' => 'osa', 'Os08g0383800' => 'osa', 'Peaxi162Scf00038g01029' => 'pax', 'Peaxi162Scf00367g00738' => 'pax', 'PGR102G1579' => 'pgr', 'PGR102G2805' => 'pgr', 'PGSC0003DMG400000821' => 'stu', 'PGSC0003DMG400002609' => 'stu', 'Phvul.003G025800' => 'pvu', 'Phvul.005G166000' => 'pvu', 'Potri.001G190100' => 'ptr', 'Potri.010G131200' => 'ptr', 'Potri.010G131300' => 'ptr', 'Pp3c15_16500' => 'ppa', 'Prupe.1G303900' => 'ppe', 'Prupe.3G058800' => 'ppe', 'Psat0s308g0040' => 'psa', 'Psat5g295640' => 'psa', 'PSO210G1329' => 'pso', 'PSO210G2028' => 'pso', 'PSO210G3782' => 'pso', 'QL01p000968' => 'qlo', 'QL01p000982' => 'qlo', 'QL05p019843' => 'qlo', 'QL05p019867' => 'qlo', 'QL05p019896' => 'qlo', 'RcHm_v2.0_Chr2g0115841' => 'rch', 'RcHm_v2.0_Chr2g0140561' => 'rch', 'RcHm_v2.0_Chr2g0140571' => 'rch', 'RcHm_v2.0_Chr4g0436031' => 'rch', 'Rhsim08G0227800' => 'rsi', 'Rhsim09G0113500' => 'rsi', 'Rhsim09G0113700' => 'rsi', 'Sabra01G0151700' => 'sbr', 'Sabra10G0100000' => 'sbr', 'Sabra10G0100100' => 'sbr', 'Sabra10G0100200' => 'sbr', 'Sabra17G0067300' => 'sbr', 'SalBow1G0023' => 'sbo', 'SalBow1G1703' => 'sbo', 'SalBow1G3178' => 'sbo', 'SalBow1G5885' => 'sbo', 'SalBow1G6692' => 'sbo', 'SalBow2G3054' => 'sbo', 'SalBow8G5517' => 'sbo', 'Sc15g0001870' => 'sci', 'Sed0019394' => 'sed', 'Sed0020302' => 'sed', 'SEGI_05826' => 'sgi', 'SEGI_06969' => 'sgi', 'SEGI_07621' => 'sgi', 'SEGI_09785' => 'sgi', 'SEGI_10179' => 'sgi', 'SEGI_14098' => 'sgi', 'SEGI_14308' => 'sgi', 'SEGI_14853' => 'sgi', 'SEGI_16411' => 'sgi', 'SEGI_16437' => 'sgi', 'SEGI_17272' => 'sgi', 'SEGI_18305' => 'sgi', 'SEGI_23127' => 'sgi', 'SEGI_23539' => 'sgi', 'SEGI_24620' => 'sgi', 'SEGI_24732' => 'sgi', 'SEGI_25628' => 'sgi', 'SEGI_25841' => 'sgi', 'SEGI_25991' => 'sgi', 'SEGI_30406' => 'sgi', 'SEGI_31636' => 'sgi', 'SEGI_33028' => 'sgi', 'SEGI_33247' => 'sgi', 'SEGI_35478' => 'sgi', 'SEGI_36061' => 'sgi', 'SEGI_37115' => 'sgi', 'SEGI_38242' => 'sgi', 'SEGI_40244' => 'sgi', 'SEGI_40880' => 'sgi', 'SGA_v2.0_scaffold66G22527' => 'sas', 'SMO118G0386' => 'smo', 'SMO128G0017' => 'smo', 'SMO143G0039' => 'smo', 'SMO143G0067' => 'smo', 'SMO143G0211' => 'smo', 'SMO301G0080' => 'smo', 'SMO351G0199' => 'smo', 'SMO351G0264' => 'smo', 'SMO367G0671' => 'smo', 'SMO367G0819' => 'smo', 'SMO367G1157' => 'smo', 'SMO367G1169' => 'smo', 'Solyc03g121040.4' => 'sly', 'Solyc05g009960.4' => 'sly', 'Sopen03g039870' => 'spe', 'Sopen05g005770' => 'spe', 'Sp3g19420' => 'spa', 'TAR376G0448' => 'tar', 'TAR376G1089' => 'tar', 'TAR383G0498' => 'tar', 'TAR383G0540' => 'tar', 'TAR383G0797' => 'tar', 'TAR628G0198' => 'tar', 'THA.LOC104810545' => 'tha', 'Thecc.02G362800' => 'tca', 'Thecc.06G100300' => 'tca', 'Thhalv10021117m.g' => 'esa', 'TPR.G2681' => 'tpr', 'TPR.G6535' => 'tpr', 'TWI12G1086' => 'twi', 'TWI75G0766' => 'twi', 'TWI75G1022' => 'twi', 'unitig_32.g10988' => 'ugi', 'vmacro10517' => 'vma', 'vmacro10518' => 'vma', 'vmacro10519' => 'vma', 'vmacro10520' => 'vma', 'vmacro18850' => 'vma', 'VMungo1080G0805' => 'vmu', 'VMungo1215G3053' => 'vmu', 'Zm00001eb121420' => 'zma', 'Zm00001eb121460' => 'zma', 'Zm00001eb178510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001868', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001868' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001868', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '352', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001868' ) ), 'genes' => array( 'A03p09860' => 'bna', 'A05p26380' => 'bna', 'A05p27240' => 'bna', 'A07p01500' => 'bna', 'Aa31LG8G8070' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3176' => 'aag', 'Actinidia13683' => 'ach', 'Actinidia14842' => 'ach', 'Actinidia16607' => 'ach', 'Actinidia32100' => 'ach', 'Actinidia38401' => 'ach', 'Ah.01g022100' => 'amhyb', 'Ah.01g022130' => 'amhyb', 'AL3G35430' => 'aly', 'Aqoxy3G03877' => 'aox', 'Aqoxy5G00470' => 'aox', 'Aqoxy7G03934' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5H969I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20K5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2FDBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENMN1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H3WDBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1LRBA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R322MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TE5PEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1UUGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9WMHM' => 'arhy', 'AT3G21360' => 'ath', 'ATR0705G178' => 'atr', 'ATR1136G032' => 'atr', 'ATR1136G086' => 'atr', 'ATR1136G094' => 'atr', 'ATR1136G104' => 'atr', 'ATR1136G123' => 'atr', 'ATR1136G189' => 'atr', 'ATR1136G196' => 'atr', 'ATR1136G210' => 'atr', 'ATR1136G214' => 'atr', 'ATR1136G219' => 'atr', 'Atru.chr11.1375' => 'acertr', 'Atru.chr11.1376' => 'acertr', 'Atru.chr11.1377' => 'acertr', 'Atru.chr11.1378' => 'acertr', 'AUR62022211' => 'cqu', 'AUR62031925' => 'cqu', 'BcaB06g26234' => 'bca', 'BcaC05g28171' => 'bca', 'BolC5t32938H' => 'bol', 'BraA04t18026Z' => 'bra', 'BraA05t21512Z' => 'bra', 'BraA05t21613Z' => 'bra', 'C05p42080' => 'bna', 'C08p18970' => 'bna', 'C09p61870' => 'bna', 'CAN.G1143.15' => 'can', 'CAN.G184.75' => 'can', 'CANSAT56G0768' => 'cansat', 'CANSAT64G1424' => 'cansat', 'CARHR097310' => 'chi', 'Carub.0003s2141' => 'cru', 'Ca_01166_v3' => 'car', 'Ca_05067_v3' => 'car', 'Cc04_g02530' => 'ccan', 'Cc11_g10740' => 'ccan', 'CDE05G1609' => 'cde', 'Cfa003643' => 'cfa', 'Cfa003645' => 'cfa', 'Cfa018646' => 'cfa', 'Cfa018647' => 'cfa', 'Cfa018685' => 'cfa', 'Ciclev10025881m.g' => 'ccl', 'Ciclev10026083m.g' => 'ccl', 'Ciclev10033372m.g' => 'ccl', 'CiPaw.01G231200' => 'cil', 'CiPaw.02G145700' => 'cil', 'CiPaw.15G002400' => 'cil', 'ClCG01G005750' => 'cla', 'ClCG09G000230' => 'cla', 'COL.COLO4_07856' => 'col', 'COL.COLO4_30516' => 'col', 'Cpa.g.sc1.233' => 'cpa', 'Cpa.g.sc25.16' => 'cpa', 'CsaV3_5G028940' => 'csa', 'CsaV3_7G035260' => 'csa', 'CSS0004774' => 'camsi', 'CSS0020354' => 'camsi', 'CSS0026529' => 'camsi', 'CSS0041135' => 'camsi', 'CSS0043311' => 'camsi', 'DCAR_023692' => 'dca', 'DCAR_026353' => 'dca', 'Dinv16519' => 'din', 'Dinv16520' => 'din', 'Dinv16521' => 'din', 'Dinv37975' => 'din', 'Duzib235G0857' => 'dzi', 'Duzib248G0276' => 'dzi', 'Duzib251G0347' => 'dzi', 'ECA232G1666' => 'eca', 'ECA232G1795' => 'eca', 'ECA232G1884' => 'eca', 'ECA232G2480' => 'eca', 'ECA232G3373' => 'eca', 'ECA232G3703' => 'eca', 'ECA232G5045' => 'eca', 'ECA234G4751' => 'eca', 'ECA246G4861' => 'eca', 'ECA247G1336' => 'eca', 'ECA247G1926' => 'eca', 'ECA248G1773' => 'eca', 'ECA248G2019' => 'eca', 'EL10Ac9g21201' => 'bvu', 'Eucgr.B03062' => 'egr', 'Eucgr.B03063' => 'egr', 'Eucgr.J02936' => 'egr', 'FAN02G0984' => 'fan', 'FAN05G0641' => 'fan', 'FAN07G0238' => 'fan', 'FAN09G3289' => 'fan', 'FAN12G1827' => 'fan', 'FAN14G0299' => 'fan', 'FAN17G2056' => 'fan', 'FAN22G1034' => 'fan', 'FvH4_4g28230' => 'fve', 'FvH4_6g32420' => 'fve', 'Glyma.01G089800' => 'gma', 'Glyma.02G101400' => 'gma', 'Glyma.15G019700' => 'gma', 'Gohir.A06G189700' => 'ghi', 'Gohir.A12G172200' => 'ghi', 'Gohir.D06G198100' => 'ghi', 'Gohir.D12G174600' => 'ghi', 'Gorai.008G187300' => 'gra', 'Gorai.010G230900' => 'gra', 'Gorai.010G231000' => 'gra', 'GSVIVG01011970001' => 'vvi', 'GSVIVG01016977001' => 'vvi', 'GSVIVG01016978001' => 'vvi', 'HanXRQChr05g0139171' => 'han', 'HanXRQChr05g0139181' => 'han', 'HanXRQChr05g0162581' => 'han', 'HanXRQChr08g0227201' => 'han', 'HanXRQChr09g0275611' => 'han', 'HanXRQChr09g0275621' => 'han', 'HanXRQChr09g0275631' => 'han', 'HanXRQChr09g0275641' => 'han', 'HanXRQChr09g0275651' => 'han', 'HanXRQChr09g0276271' => 'han', 'HanXRQChr10g0280781' => 'han', 'HanXRQChr10g0280841' => 'han', 'HanXRQChr10g0280871' => 'han', 'HanXRQChr15g0472091' => 'han', 'HanXRQChr15g0476021' => 'han', 'Haze_15851' => 'cav', 'Haze_17422' => 'cav', 'Haze_17423' => 'cav', 'Hma1.2p1_0430F.1_g151380' => 'hma', 'Hma1.2p1_0605F.1_g187840' => 'hma', 'Hma1.2p1_1207F.1_g267023' => 'hma', 'Hma1.2p1_1207F.1_g267026' => 'hma', 'HPP92_003620' => 'vpl', 'HPP92_004471' => 'vpl', 'HPP92_004472' => 'vpl', 'HPP92_004473' => 'vpl', 'HPP92_004474' => 'vpl', 'HPP92_004482' => 'vpl', 'HPP92_004483' => 'vpl', 'HPP92_004484' => 'vpl', 'HPP92_005416' => 'vpl', 'Hund00695' => 'sun', 'Lalb_Chr22g0351561' => 'lal', 'Lj2g0012278' => 'lja', 'Lj3A1021T35' => 'lonja', 'Lj3g0017675' => 'lja', 'Lj9A513G54' => 'lonja', 'Lsat_1_v5_gn_0_20960' => 'lsa', 'Lsat_1_v5_gn_1_118801' => 'lsa', 'Lsat_1_v5_gn_1_119000' => 'lsa', 'Lsat_1_v5_gn_1_119060' => 'lsa', 'Lsat_1_v5_gn_1_36780' => 'lsa', 'Lsat_1_v5_gn_3_57321' => 'lsa', 'Lsat_1_v5_gn_3_57360' => 'lsa', 'Lsat_1_v5_gn_4_87081' => 'lsa', 'Lsat_1_v5_gn_4_97380' => 'lsa', 'Lsat_1_v5_gn_4_97640' => 'lsa', 'Lsat_1_v5_gn_4_98661' => 'lsa', 'Lsat_1_v5_gn_4_98761' => 'lsa', 'Lsat_1_v5_gn_4_98781' => 'lsa', 'Lsat_1_v5_gn_4_98941' => 'lsa', 'Lsat_1_v5_gn_4_99021' => 'lsa', 'Lsat_1_v5_gn_4_99241' => 'lsa', 'Lsat_1_v5_gn_4_99281' => 'lsa', 'Lsat_1_v5_gn_4_99301' => 'lsa', 'Manes.06G073700' => 'mes', 'Manes.06G073800' => 'mes', 'Manes.11G033300' => 'mes', 'Manes.14G096400' => 'mes', 'Mapoly0024s0085' => 'mpo', 'Mapoly0064s0118' => 'mpo', 'Mapoly0070s0057' => 'mpo', 'MBI04_g20308_MAGBIO' => 'mbi', 'MBI04_g37503_MAGBIO' => 'mbi', 'MBI06_g35219_MAGBIO' => 'mbi', 'MBI06_g35221_MAGBIO' => 'mbi', 'MBI06_g39484_MAGBIO' => 'mbi', 'MBI06_g42849_MAGBIO' => 'mbi', 'MCO10G227' => 'mco', 'MD09G1202600' => 'mdo', 'MD10G1294600' => 'mdo', 'MD10G1294700' => 'mdo', 'MD13G1048200' => 'mdo', 'MD13G1048300' => 'mdo', 'MD17G1183800' => 'mdo', 'Medtr0021s0370' => 'mtr', 'Medtr0681s0020' => 'mtr', 'Medtr2g100850' => 'mtr', 'MELO3C005355.2' => 'cme', 'MELO3C024436.2' => 'cme', 'Migut.D01564' => 'egut', 'Migut.I00895' => 'egut', 'Migut.L01104' => 'egut', 'MSTRG.22637' => 'ama', 'Nitab4.5_0004705g0060' => 'nta', 'Nitab4.5_0004969g0010' => 'nta', 'Nitab4.5_0008646g0020' => 'nta', 'Nitab4.5_0009780g0030' => 'nta', 'Nn5g27565' => 'nnu', 'Nn6g35324' => 'nnu', 'Oeu017123.1' => 'oeu', 'Oeu024106.1' => 'oeu', 'Oeu026774.1' => 'oeu', 'Os01g0190000' => 'osa', 'Os08g0383800' => 'osa', 'Peaxi162Scf00038g01029' => 'pax', 'Peaxi162Scf00367g00738' => 'pax', 'PGR102G1579' => 'pgr', 'PGR102G2805' => 'pgr', 'PGSC0003DMG400000821' => 'stu', 'PGSC0003DMG400002609' => 'stu', 'Phvul.003G025800' => 'pvu', 'Phvul.005G166000' => 'pvu', 'Potri.001G190100' => 'ptr', 'Potri.010G131200' => 'ptr', 'Potri.010G131300' => 'ptr', 'Pp3c15_16500' => 'ppa', 'Prupe.1G303900' => 'ppe', 'Prupe.3G058800' => 'ppe', 'Psat0s308g0040' => 'psa', 'Psat5g295640' => 'psa', 'PSO210G1329' => 'pso', 'PSO210G2028' => 'pso', 'PSO210G3782' => 'pso', 'QL01p000968' => 'qlo', 'QL01p000982' => 'qlo', 'QL05p019843' => 'qlo', 'QL05p019867' => 'qlo', 'QL05p019896' => 'qlo', 'RcHm_v2.0_Chr2g0115841' => 'rch', 'RcHm_v2.0_Chr2g0140561' => 'rch', 'RcHm_v2.0_Chr2g0140571' => 'rch', 'RcHm_v2.0_Chr4g0436031' => 'rch', 'Rhsim08G0227800' => 'rsi', 'Rhsim09G0113500' => 'rsi', 'Rhsim09G0113700' => 'rsi', 'Sabra01G0151700' => 'sbr', 'Sabra10G0100000' => 'sbr', 'Sabra10G0100100' => 'sbr', 'Sabra10G0100200' => 'sbr', 'Sabra17G0067300' => 'sbr', 'SalBow1G0023' => 'sbo', 'SalBow1G1703' => 'sbo', 'SalBow1G3178' => 'sbo', 'SalBow1G5885' => 'sbo', 'SalBow1G6692' => 'sbo', 'SalBow2G3054' => 'sbo', 'SalBow8G5517' => 'sbo', 'Sc15g0001870' => 'sci', 'Sed0019394' => 'sed', 'Sed0020302' => 'sed', 'SEGI_05826' => 'sgi', 'SEGI_06969' => 'sgi', 'SEGI_07621' => 'sgi', 'SEGI_09785' => 'sgi', 'SEGI_10179' => 'sgi', 'SEGI_14098' => 'sgi', 'SEGI_14308' => 'sgi', 'SEGI_14853' => 'sgi', 'SEGI_16411' => 'sgi', 'SEGI_16437' => 'sgi', 'SEGI_17272' => 'sgi', 'SEGI_18305' => 'sgi', 'SEGI_23127' => 'sgi', 'SEGI_23539' => 'sgi', 'SEGI_24620' => 'sgi', 'SEGI_24732' => 'sgi', 'SEGI_25628' => 'sgi', 'SEGI_25841' => 'sgi', 'SEGI_25991' => 'sgi', 'SEGI_30406' => 'sgi', 'SEGI_31636' => 'sgi', 'SEGI_33028' => 'sgi', 'SEGI_33247' => 'sgi', 'SEGI_35478' => 'sgi', 'SEGI_36061' => 'sgi', 'SEGI_37115' => 'sgi', 'SEGI_38242' => 'sgi', 'SEGI_40244' => 'sgi', 'SEGI_40880' => 'sgi', 'SGA_v2.0_scaffold66G22527' => 'sas', 'SMO118G0386' => 'smo', 'SMO128G0017' => 'smo', 'SMO143G0039' => 'smo', 'SMO143G0067' => 'smo', 'SMO143G0211' => 'smo', 'SMO301G0080' => 'smo', 'SMO351G0199' => 'smo', 'SMO351G0264' => 'smo', 'SMO367G0671' => 'smo', 'SMO367G0819' => 'smo', 'SMO367G1157' => 'smo', 'SMO367G1169' => 'smo', 'Solyc03g121040.4' => 'sly', 'Solyc05g009960.4' => 'sly', 'Sopen03g039870' => 'spe', 'Sopen05g005770' => 'spe', 'Sp3g19420' => 'spa', 'TAR376G0448' => 'tar', 'TAR376G1089' => 'tar', 'TAR383G0498' => 'tar', 'TAR383G0540' => 'tar', 'TAR383G0797' => 'tar', 'TAR628G0198' => 'tar', 'THA.LOC104810545' => 'tha', 'Thecc.02G362800' => 'tca', 'Thecc.06G100300' => 'tca', 'Thhalv10021117m.g' => 'esa', 'TPR.G2681' => 'tpr', 'TPR.G6535' => 'tpr', 'TWI12G1086' => 'twi', 'TWI75G0766' => 'twi', 'TWI75G1022' => 'twi', 'unitig_32.g10988' => 'ugi', 'vmacro10517' => 'vma', 'vmacro10518' => 'vma', 'vmacro10519' => 'vma', 'vmacro10520' => 'vma', 'vmacro18850' => 'vma', 'VMungo1080G0805' => 'vmu', 'VMungo1215G3053' => 'vmu', 'Zm00001eb121420' => 'zma', 'Zm00001eb121460' => 'zma', 'Zm00001eb178510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001868' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001868' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001868' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001868' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001868', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '352', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p09860' => 'bna', 'A05p26380' => 'bna', 'A05p27240' => 'bna', 'A07p01500' => 'bna', 'Aa31LG8G8070' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3176' => 'aag', 'Actinidia13683' => 'ach', 'Actinidia14842' => 'ach', 'Actinidia16607' => 'ach', 'Actinidia32100' => 'ach', 'Actinidia38401' => 'ach', 'Ah.01g022100' => 'amhyb', 'Ah.01g022130' => 'amhyb', 'AL3G35430' => 'aly', 'Aqoxy3G03877' => 'aox', 'Aqoxy5G00470' => 'aox', 'Aqoxy7G03934' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5H969I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20K5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2FDBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENMN1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H3WDBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1LRBA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R322MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TE5PEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1UUGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9WMHM' => 'arhy', 'AT3G21360' => 'ath', 'ATR0705G178' => 'atr', 'ATR1136G032' => 'atr', 'ATR1136G086' => 'atr', 'ATR1136G094' => 'atr', 'ATR1136G104' => 'atr', 'ATR1136G123' => 'atr', 'ATR1136G189' => 'atr', 'ATR1136G196' => 'atr', 'ATR1136G210' => 'atr', 'ATR1136G214' => 'atr', 'ATR1136G219' => 'atr', 'Atru.chr11.1375' => 'acertr', 'Atru.chr11.1376' => 'acertr', 'Atru.chr11.1377' => 'acertr', 'Atru.chr11.1378' => 'acertr', 'AUR62022211' => 'cqu', 'AUR62031925' => 'cqu', 'BcaB06g26234' => 'bca', 'BcaC05g28171' => 'bca', 'BolC5t32938H' => 'bol', 'BraA04t18026Z' => 'bra', 'BraA05t21512Z' => 'bra', 'BraA05t21613Z' => 'bra', 'C05p42080' => 'bna', 'C08p18970' => 'bna', 'C09p61870' => 'bna', 'CAN.G1143.15' => 'can', 'CAN.G184.75' => 'can', 'CANSAT56G0768' => 'cansat', 'CANSAT64G1424' => 'cansat', 'CARHR097310' => 'chi', 'Carub.0003s2141' => 'cru', 'Ca_01166_v3' => 'car', 'Ca_05067_v3' => 'car', 'Cc04_g02530' => 'ccan', 'Cc11_g10740' => 'ccan', 'CDE05G1609' => 'cde', 'Cfa003643' => 'cfa', 'Cfa003645' => 'cfa', 'Cfa018646' => 'cfa', 'Cfa018647' => 'cfa', 'Cfa018685' => 'cfa', 'Ciclev10025881m.g' => 'ccl', 'Ciclev10026083m.g' => 'ccl', 'Ciclev10033372m.g' => 'ccl', 'CiPaw.01G231200' => 'cil', 'CiPaw.02G145700' => 'cil', 'CiPaw.15G002400' => 'cil', 'ClCG01G005750' => 'cla', 'ClCG09G000230' => 'cla', 'COL.COLO4_07856' => 'col', 'COL.COLO4_30516' => 'col', 'Cpa.g.sc1.233' => 'cpa', 'Cpa.g.sc25.16' => 'cpa', 'CsaV3_5G028940' => 'csa', 'CsaV3_7G035260' => 'csa', 'CSS0004774' => 'camsi', 'CSS0020354' => 'camsi', 'CSS0026529' => 'camsi', 'CSS0041135' => 'camsi', 'CSS0043311' => 'camsi', 'DCAR_023692' => 'dca', 'DCAR_026353' => 'dca', 'Dinv16519' => 'din', 'Dinv16520' => 'din', 'Dinv16521' => 'din', 'Dinv37975' => 'din', 'Duzib235G0857' => 'dzi', 'Duzib248G0276' => 'dzi', 'Duzib251G0347' => 'dzi', 'ECA232G1666' => 'eca', 'ECA232G1795' => 'eca', 'ECA232G1884' => 'eca', 'ECA232G2480' => 'eca', 'ECA232G3373' => 'eca', 'ECA232G3703' => 'eca', 'ECA232G5045' => 'eca', 'ECA234G4751' => 'eca', 'ECA246G4861' => 'eca', 'ECA247G1336' => 'eca', 'ECA247G1926' => 'eca', 'ECA248G1773' => 'eca', 'ECA248G2019' => 'eca', 'EL10Ac9g21201' => 'bvu', 'Eucgr.B03062' => 'egr', 'Eucgr.B03063' => 'egr', 'Eucgr.J02936' => 'egr', 'FAN02G0984' => 'fan', 'FAN05G0641' => 'fan', 'FAN07G0238' => 'fan', 'FAN09G3289' => 'fan', 'FAN12G1827' => 'fan', 'FAN14G0299' => 'fan', 'FAN17G2056' => 'fan', 'FAN22G1034' => 'fan', 'FvH4_4g28230' => 'fve', 'FvH4_6g32420' => 'fve', 'Glyma.01G089800' => 'gma', 'Glyma.02G101400' => 'gma', 'Glyma.15G019700' => 'gma', 'Gohir.A06G189700' => 'ghi', 'Gohir.A12G172200' => 'ghi', 'Gohir.D06G198100' => 'ghi', 'Gohir.D12G174600' => 'ghi', 'Gorai.008G187300' => 'gra', 'Gorai.010G230900' => 'gra', 'Gorai.010G231000' => 'gra', 'GSVIVG01011970001' => 'vvi', 'GSVIVG01016977001' => 'vvi', 'GSVIVG01016978001' => 'vvi', 'HanXRQChr05g0139171' => 'han', 'HanXRQChr05g0139181' => 'han', 'HanXRQChr05g0162581' => 'han', 'HanXRQChr08g0227201' => 'han', 'HanXRQChr09g0275611' => 'han', 'HanXRQChr09g0275621' => 'han', 'HanXRQChr09g0275631' => 'han', 'HanXRQChr09g0275641' => 'han', 'HanXRQChr09g0275651' => 'han', 'HanXRQChr09g0276271' => 'han', 'HanXRQChr10g0280781' => 'han', 'HanXRQChr10g0280841' => 'han', 'HanXRQChr10g0280871' => 'han', 'HanXRQChr15g0472091' => 'han', 'HanXRQChr15g0476021' => 'han', 'Haze_15851' => 'cav', 'Haze_17422' => 'cav', 'Haze_17423' => 'cav', 'Hma1.2p1_0430F.1_g151380' => 'hma', 'Hma1.2p1_0605F.1_g187840' => 'hma', 'Hma1.2p1_1207F.1_g267023' => 'hma', 'Hma1.2p1_1207F.1_g267026' => 'hma', 'HPP92_003620' => 'vpl', 'HPP92_004471' => 'vpl', 'HPP92_004472' => 'vpl', 'HPP92_004473' => 'vpl', 'HPP92_004474' => 'vpl', 'HPP92_004482' => 'vpl', 'HPP92_004483' => 'vpl', 'HPP92_004484' => 'vpl', 'HPP92_005416' => 'vpl', 'Hund00695' => 'sun', 'Lalb_Chr22g0351561' => 'lal', 'Lj2g0012278' => 'lja', 'Lj3A1021T35' => 'lonja', 'Lj3g0017675' => 'lja', 'Lj9A513G54' => 'lonja', 'Lsat_1_v5_gn_0_20960' => 'lsa', 'Lsat_1_v5_gn_1_118801' => 'lsa', 'Lsat_1_v5_gn_1_119000' => 'lsa', 'Lsat_1_v5_gn_1_119060' => 'lsa', 'Lsat_1_v5_gn_1_36780' => 'lsa', 'Lsat_1_v5_gn_3_57321' => 'lsa', 'Lsat_1_v5_gn_3_57360' => 'lsa', 'Lsat_1_v5_gn_4_87081' => 'lsa', 'Lsat_1_v5_gn_4_97380' => 'lsa', 'Lsat_1_v5_gn_4_97640' => 'lsa', 'Lsat_1_v5_gn_4_98661' => 'lsa', 'Lsat_1_v5_gn_4_98761' => 'lsa', 'Lsat_1_v5_gn_4_98781' => 'lsa', 'Lsat_1_v5_gn_4_98941' => 'lsa', 'Lsat_1_v5_gn_4_99021' => 'lsa', 'Lsat_1_v5_gn_4_99241' => 'lsa', 'Lsat_1_v5_gn_4_99281' => 'lsa', 'Lsat_1_v5_gn_4_99301' => 'lsa', 'Manes.06G073700' => 'mes', 'Manes.06G073800' => 'mes', 'Manes.11G033300' => 'mes', 'Manes.14G096400' => 'mes', 'Mapoly0024s0085' => 'mpo', 'Mapoly0064s0118' => 'mpo', 'Mapoly0070s0057' => 'mpo', 'MBI04_g20308_MAGBIO' => 'mbi', 'MBI04_g37503_MAGBIO' => 'mbi', 'MBI06_g35219_MAGBIO' => 'mbi', 'MBI06_g35221_MAGBIO' => 'mbi', 'MBI06_g39484_MAGBIO' => 'mbi', 'MBI06_g42849_MAGBIO' => 'mbi', 'MCO10G227' => 'mco', 'MD09G1202600' => 'mdo', 'MD10G1294600' => 'mdo', 'MD10G1294700' => 'mdo', 'MD13G1048200' => 'mdo', 'MD13G1048300' => 'mdo', 'MD17G1183800' => 'mdo', 'Medtr0021s0370' => 'mtr', 'Medtr0681s0020' => 'mtr', 'Medtr2g100850' => 'mtr', 'MELO3C005355.2' => 'cme', 'MELO3C024436.2' => 'cme', 'Migut.D01564' => 'egut', 'Migut.I00895' => 'egut', 'Migut.L01104' => 'egut', 'MSTRG.22637' => 'ama', 'Nitab4.5_0004705g0060' => 'nta', 'Nitab4.5_0004969g0010' => 'nta', 'Nitab4.5_0008646g0020' => 'nta', 'Nitab4.5_0009780g0030' => 'nta', 'Nn5g27565' => 'nnu', 'Nn6g35324' => 'nnu', 'Oeu017123.1' => 'oeu', 'Oeu024106.1' => 'oeu', 'Oeu026774.1' => 'oeu', 'Os01g0190000' => 'osa', 'Os08g0383800' => 'osa', 'Peaxi162Scf00038g01029' => 'pax', 'Peaxi162Scf00367g00738' => 'pax', 'PGR102G1579' => 'pgr', 'PGR102G2805' => 'pgr', 'PGSC0003DMG400000821' => 'stu', 'PGSC0003DMG400002609' => 'stu', 'Phvul.003G025800' => 'pvu', 'Phvul.005G166000' => 'pvu', 'Potri.001G190100' => 'ptr', 'Potri.010G131200' => 'ptr', 'Potri.010G131300' => 'ptr', 'Pp3c15_16500' => 'ppa', 'Prupe.1G303900' => 'ppe', 'Prupe.3G058800' => 'ppe', 'Psat0s308g0040' => 'psa', 'Psat5g295640' => 'psa', 'PSO210G1329' => 'pso', 'PSO210G2028' => 'pso', 'PSO210G3782' => 'pso', 'QL01p000968' => 'qlo', 'QL01p000982' => 'qlo', 'QL05p019843' => 'qlo', 'QL05p019867' => 'qlo', 'QL05p019896' => 'qlo', 'RcHm_v2.0_Chr2g0115841' => 'rch', 'RcHm_v2.0_Chr2g0140561' => 'rch', 'RcHm_v2.0_Chr2g0140571' => 'rch', 'RcHm_v2.0_Chr4g0436031' => 'rch', 'Rhsim08G0227800' => 'rsi', 'Rhsim09G0113500' => 'rsi', 'Rhsim09G0113700' => 'rsi', 'Sabra01G0151700' => 'sbr', 'Sabra10G0100000' => 'sbr', 'Sabra10G0100100' => 'sbr', 'Sabra10G0100200' => 'sbr', 'Sabra17G0067300' => 'sbr', 'SalBow1G0023' => 'sbo', 'SalBow1G1703' => 'sbo', 'SalBow1G3178' => 'sbo', 'SalBow1G5885' => 'sbo', 'SalBow1G6692' => 'sbo', 'SalBow2G3054' => 'sbo', 'SalBow8G5517' => 'sbo', 'Sc15g0001870' => 'sci', 'Sed0019394' => 'sed', 'Sed0020302' => 'sed', 'SEGI_05826' => 'sgi', 'SEGI_06969' => 'sgi', 'SEGI_07621' => 'sgi', 'SEGI_09785' => 'sgi', 'SEGI_10179' => 'sgi', 'SEGI_14098' => 'sgi', 'SEGI_14308' => 'sgi', 'SEGI_14853' => 'sgi', 'SEGI_16411' => 'sgi', 'SEGI_16437' => 'sgi', 'SEGI_17272' => 'sgi', 'SEGI_18305' => 'sgi', 'SEGI_23127' => 'sgi', 'SEGI_23539' => 'sgi', 'SEGI_24620' => 'sgi', 'SEGI_24732' => 'sgi', 'SEGI_25628' => 'sgi', 'SEGI_25841' => 'sgi', 'SEGI_25991' => 'sgi', 'SEGI_30406' => 'sgi', 'SEGI_31636' => 'sgi', 'SEGI_33028' => 'sgi', 'SEGI_33247' => 'sgi', 'SEGI_35478' => 'sgi', 'SEGI_36061' => 'sgi', 'SEGI_37115' => 'sgi', 'SEGI_38242' => 'sgi', 'SEGI_40244' => 'sgi', 'SEGI_40880' => 'sgi', 'SGA_v2.0_scaffold66G22527' => 'sas', 'SMO118G0386' => 'smo', 'SMO128G0017' => 'smo', 'SMO143G0039' => 'smo', 'SMO143G0067' => 'smo', 'SMO143G0211' => 'smo', 'SMO301G0080' => 'smo', 'SMO351G0199' => 'smo', 'SMO351G0264' => 'smo', 'SMO367G0671' => 'smo', 'SMO367G0819' => 'smo', 'SMO367G1157' => 'smo', 'SMO367G1169' => 'smo', 'Solyc03g121040.4' => 'sly', 'Solyc05g009960.4' => 'sly', 'Sopen03g039870' => 'spe', 'Sopen05g005770' => 'spe', 'Sp3g19420' => 'spa', 'TAR376G0448' => 'tar', 'TAR376G1089' => 'tar', 'TAR383G0498' => 'tar', 'TAR383G0540' => 'tar', 'TAR383G0797' => 'tar', 'TAR628G0198' => 'tar', 'THA.LOC104810545' => 'tha', 'Thecc.02G362800' => 'tca', 'Thecc.06G100300' => 'tca', 'Thhalv10021117m.g' => 'esa', 'TPR.G2681' => 'tpr', 'TPR.G6535' => 'tpr', 'TWI12G1086' => 'twi', 'TWI75G0766' => 'twi', 'TWI75G1022' => 'twi', 'unitig_32.g10988' => 'ugi', 'vmacro10517' => 'vma', 'vmacro10518' => 'vma', 'vmacro10519' => 'vma', 'vmacro10520' => 'vma', 'vmacro18850' => 'vma', 'VMungo1080G0805' => 'vmu', 'VMungo1215G3053' => 'vmu', 'Zm00001eb121420' => 'zma', 'Zm00001eb121460' => 'zma', 'Zm00001eb178510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001868', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001868' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001868', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '352', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001868' ) ), 'genes' => array( 'A03p09860' => 'bna', 'A05p26380' => 'bna', 'A05p27240' => 'bna', 'A07p01500' => 'bna', 'Aa31LG8G8070' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3176' => 'aag', 'Actinidia13683' => 'ach', 'Actinidia14842' => 'ach', 'Actinidia16607' => 'ach', 'Actinidia32100' => 'ach', 'Actinidia38401' => 'ach', 'Ah.01g022100' => 'amhyb', 'Ah.01g022130' => 'amhyb', 'AL3G35430' => 'aly', 'Aqoxy3G03877' => 'aox', 'Aqoxy5G00470' => 'aox', 'Aqoxy7G03934' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5H969I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20K5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2FDBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENMN1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H3WDBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1LRBA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R322MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TE5PEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1UUGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9WMHM' => 'arhy', 'AT3G21360' => 'ath', 'ATR0705G178' => 'atr', 'ATR1136G032' => 'atr', 'ATR1136G086' => 'atr', 'ATR1136G094' => 'atr', 'ATR1136G104' => 'atr', 'ATR1136G123' => 'atr', 'ATR1136G189' => 'atr', 'ATR1136G196' => 'atr', 'ATR1136G210' => 'atr', 'ATR1136G214' => 'atr', 'ATR1136G219' => 'atr', 'Atru.chr11.1375' => 'acertr', 'Atru.chr11.1376' => 'acertr', 'Atru.chr11.1377' => 'acertr', 'Atru.chr11.1378' => 'acertr', 'AUR62022211' => 'cqu', 'AUR62031925' => 'cqu', 'BcaB06g26234' => 'bca', 'BcaC05g28171' => 'bca', 'BolC5t32938H' => 'bol', 'BraA04t18026Z' => 'bra', 'BraA05t21512Z' => 'bra', 'BraA05t21613Z' => 'bra', 'C05p42080' => 'bna', 'C08p18970' => 'bna', 'C09p61870' => 'bna', 'CAN.G1143.15' => 'can', 'CAN.G184.75' => 'can', 'CANSAT56G0768' => 'cansat', 'CANSAT64G1424' => 'cansat', 'CARHR097310' => 'chi', 'Carub.0003s2141' => 'cru', 'Ca_01166_v3' => 'car', 'Ca_05067_v3' => 'car', 'Cc04_g02530' => 'ccan', 'Cc11_g10740' => 'ccan', 'CDE05G1609' => 'cde', 'Cfa003643' => 'cfa', 'Cfa003645' => 'cfa', 'Cfa018646' => 'cfa', 'Cfa018647' => 'cfa', 'Cfa018685' => 'cfa', 'Ciclev10025881m.g' => 'ccl', 'Ciclev10026083m.g' => 'ccl', 'Ciclev10033372m.g' => 'ccl', 'CiPaw.01G231200' => 'cil', 'CiPaw.02G145700' => 'cil', 'CiPaw.15G002400' => 'cil', 'ClCG01G005750' => 'cla', 'ClCG09G000230' => 'cla', 'COL.COLO4_07856' => 'col', 'COL.COLO4_30516' => 'col', 'Cpa.g.sc1.233' => 'cpa', 'Cpa.g.sc25.16' => 'cpa', 'CsaV3_5G028940' => 'csa', 'CsaV3_7G035260' => 'csa', 'CSS0004774' => 'camsi', 'CSS0020354' => 'camsi', 'CSS0026529' => 'camsi', 'CSS0041135' => 'camsi', 'CSS0043311' => 'camsi', 'DCAR_023692' => 'dca', 'DCAR_026353' => 'dca', 'Dinv16519' => 'din', 'Dinv16520' => 'din', 'Dinv16521' => 'din', 'Dinv37975' => 'din', 'Duzib235G0857' => 'dzi', 'Duzib248G0276' => 'dzi', 'Duzib251G0347' => 'dzi', 'ECA232G1666' => 'eca', 'ECA232G1795' => 'eca', 'ECA232G1884' => 'eca', 'ECA232G2480' => 'eca', 'ECA232G3373' => 'eca', 'ECA232G3703' => 'eca', 'ECA232G5045' => 'eca', 'ECA234G4751' => 'eca', 'ECA246G4861' => 'eca', 'ECA247G1336' => 'eca', 'ECA247G1926' => 'eca', 'ECA248G1773' => 'eca', 'ECA248G2019' => 'eca', 'EL10Ac9g21201' => 'bvu', 'Eucgr.B03062' => 'egr', 'Eucgr.B03063' => 'egr', 'Eucgr.J02936' => 'egr', 'FAN02G0984' => 'fan', 'FAN05G0641' => 'fan', 'FAN07G0238' => 'fan', 'FAN09G3289' => 'fan', 'FAN12G1827' => 'fan', 'FAN14G0299' => 'fan', 'FAN17G2056' => 'fan', 'FAN22G1034' => 'fan', 'FvH4_4g28230' => 'fve', 'FvH4_6g32420' => 'fve', 'Glyma.01G089800' => 'gma', 'Glyma.02G101400' => 'gma', 'Glyma.15G019700' => 'gma', 'Gohir.A06G189700' => 'ghi', 'Gohir.A12G172200' => 'ghi', 'Gohir.D06G198100' => 'ghi', 'Gohir.D12G174600' => 'ghi', 'Gorai.008G187300' => 'gra', 'Gorai.010G230900' => 'gra', 'Gorai.010G231000' => 'gra', 'GSVIVG01011970001' => 'vvi', 'GSVIVG01016977001' => 'vvi', 'GSVIVG01016978001' => 'vvi', 'HanXRQChr05g0139171' => 'han', 'HanXRQChr05g0139181' => 'han', 'HanXRQChr05g0162581' => 'han', 'HanXRQChr08g0227201' => 'han', 'HanXRQChr09g0275611' => 'han', 'HanXRQChr09g0275621' => 'han', 'HanXRQChr09g0275631' => 'han', 'HanXRQChr09g0275641' => 'han', 'HanXRQChr09g0275651' => 'han', 'HanXRQChr09g0276271' => 'han', 'HanXRQChr10g0280781' => 'han', 'HanXRQChr10g0280841' => 'han', 'HanXRQChr10g0280871' => 'han', 'HanXRQChr15g0472091' => 'han', 'HanXRQChr15g0476021' => 'han', 'Haze_15851' => 'cav', 'Haze_17422' => 'cav', 'Haze_17423' => 'cav', 'Hma1.2p1_0430F.1_g151380' => 'hma', 'Hma1.2p1_0605F.1_g187840' => 'hma', 'Hma1.2p1_1207F.1_g267023' => 'hma', 'Hma1.2p1_1207F.1_g267026' => 'hma', 'HPP92_003620' => 'vpl', 'HPP92_004471' => 'vpl', 'HPP92_004472' => 'vpl', 'HPP92_004473' => 'vpl', 'HPP92_004474' => 'vpl', 'HPP92_004482' => 'vpl', 'HPP92_004483' => 'vpl', 'HPP92_004484' => 'vpl', 'HPP92_005416' => 'vpl', 'Hund00695' => 'sun', 'Lalb_Chr22g0351561' => 'lal', 'Lj2g0012278' => 'lja', 'Lj3A1021T35' => 'lonja', 'Lj3g0017675' => 'lja', 'Lj9A513G54' => 'lonja', 'Lsat_1_v5_gn_0_20960' => 'lsa', 'Lsat_1_v5_gn_1_118801' => 'lsa', 'Lsat_1_v5_gn_1_119000' => 'lsa', 'Lsat_1_v5_gn_1_119060' => 'lsa', 'Lsat_1_v5_gn_1_36780' => 'lsa', 'Lsat_1_v5_gn_3_57321' => 'lsa', 'Lsat_1_v5_gn_3_57360' => 'lsa', 'Lsat_1_v5_gn_4_87081' => 'lsa', 'Lsat_1_v5_gn_4_97380' => 'lsa', 'Lsat_1_v5_gn_4_97640' => 'lsa', 'Lsat_1_v5_gn_4_98661' => 'lsa', 'Lsat_1_v5_gn_4_98761' => 'lsa', 'Lsat_1_v5_gn_4_98781' => 'lsa', 'Lsat_1_v5_gn_4_98941' => 'lsa', 'Lsat_1_v5_gn_4_99021' => 'lsa', 'Lsat_1_v5_gn_4_99241' => 'lsa', 'Lsat_1_v5_gn_4_99281' => 'lsa', 'Lsat_1_v5_gn_4_99301' => 'lsa', 'Manes.06G073700' => 'mes', 'Manes.06G073800' => 'mes', 'Manes.11G033300' => 'mes', 'Manes.14G096400' => 'mes', 'Mapoly0024s0085' => 'mpo', 'Mapoly0064s0118' => 'mpo', 'Mapoly0070s0057' => 'mpo', 'MBI04_g20308_MAGBIO' => 'mbi', 'MBI04_g37503_MAGBIO' => 'mbi', 'MBI06_g35219_MAGBIO' => 'mbi', 'MBI06_g35221_MAGBIO' => 'mbi', 'MBI06_g39484_MAGBIO' => 'mbi', 'MBI06_g42849_MAGBIO' => 'mbi', 'MCO10G227' => 'mco', 'MD09G1202600' => 'mdo', 'MD10G1294600' => 'mdo', 'MD10G1294700' => 'mdo', 'MD13G1048200' => 'mdo', 'MD13G1048300' => 'mdo', 'MD17G1183800' => 'mdo', 'Medtr0021s0370' => 'mtr', 'Medtr0681s0020' => 'mtr', 'Medtr2g100850' => 'mtr', 'MELO3C005355.2' => 'cme', 'MELO3C024436.2' => 'cme', 'Migut.D01564' => 'egut', 'Migut.I00895' => 'egut', 'Migut.L01104' => 'egut', 'MSTRG.22637' => 'ama', 'Nitab4.5_0004705g0060' => 'nta', 'Nitab4.5_0004969g0010' => 'nta', 'Nitab4.5_0008646g0020' => 'nta', 'Nitab4.5_0009780g0030' => 'nta', 'Nn5g27565' => 'nnu', 'Nn6g35324' => 'nnu', 'Oeu017123.1' => 'oeu', 'Oeu024106.1' => 'oeu', 'Oeu026774.1' => 'oeu', 'Os01g0190000' => 'osa', 'Os08g0383800' => 'osa', 'Peaxi162Scf00038g01029' => 'pax', 'Peaxi162Scf00367g00738' => 'pax', 'PGR102G1579' => 'pgr', 'PGR102G2805' => 'pgr', 'PGSC0003DMG400000821' => 'stu', 'PGSC0003DMG400002609' => 'stu', 'Phvul.003G025800' => 'pvu', 'Phvul.005G166000' => 'pvu', 'Potri.001G190100' => 'ptr', 'Potri.010G131200' => 'ptr', 'Potri.010G131300' => 'ptr', 'Pp3c15_16500' => 'ppa', 'Prupe.1G303900' => 'ppe', 'Prupe.3G058800' => 'ppe', 'Psat0s308g0040' => 'psa', 'Psat5g295640' => 'psa', 'PSO210G1329' => 'pso', 'PSO210G2028' => 'pso', 'PSO210G3782' => 'pso', 'QL01p000968' => 'qlo', 'QL01p000982' => 'qlo', 'QL05p019843' => 'qlo', 'QL05p019867' => 'qlo', 'QL05p019896' => 'qlo', 'RcHm_v2.0_Chr2g0115841' => 'rch', 'RcHm_v2.0_Chr2g0140561' => 'rch', 'RcHm_v2.0_Chr2g0140571' => 'rch', 'RcHm_v2.0_Chr4g0436031' => 'rch', 'Rhsim08G0227800' => 'rsi', 'Rhsim09G0113500' => 'rsi', 'Rhsim09G0113700' => 'rsi', 'Sabra01G0151700' => 'sbr', 'Sabra10G0100000' => 'sbr', 'Sabra10G0100100' => 'sbr', 'Sabra10G0100200' => 'sbr', 'Sabra17G0067300' => 'sbr', 'SalBow1G0023' => 'sbo', 'SalBow1G1703' => 'sbo', 'SalBow1G3178' => 'sbo', 'SalBow1G5885' => 'sbo', 'SalBow1G6692' => 'sbo', 'SalBow2G3054' => 'sbo', 'SalBow8G5517' => 'sbo', 'Sc15g0001870' => 'sci', 'Sed0019394' => 'sed', 'Sed0020302' => 'sed', 'SEGI_05826' => 'sgi', 'SEGI_06969' => 'sgi', 'SEGI_07621' => 'sgi', 'SEGI_09785' => 'sgi', 'SEGI_10179' => 'sgi', 'SEGI_14098' => 'sgi', 'SEGI_14308' => 'sgi', 'SEGI_14853' => 'sgi', 'SEGI_16411' => 'sgi', 'SEGI_16437' => 'sgi', 'SEGI_17272' => 'sgi', 'SEGI_18305' => 'sgi', 'SEGI_23127' => 'sgi', 'SEGI_23539' => 'sgi', 'SEGI_24620' => 'sgi', 'SEGI_24732' => 'sgi', 'SEGI_25628' => 'sgi', 'SEGI_25841' => 'sgi', 'SEGI_25991' => 'sgi', 'SEGI_30406' => 'sgi', 'SEGI_31636' => 'sgi', 'SEGI_33028' => 'sgi', 'SEGI_33247' => 'sgi', 'SEGI_35478' => 'sgi', 'SEGI_36061' => 'sgi', 'SEGI_37115' => 'sgi', 'SEGI_38242' => 'sgi', 'SEGI_40244' => 'sgi', 'SEGI_40880' => 'sgi', 'SGA_v2.0_scaffold66G22527' => 'sas', 'SMO118G0386' => 'smo', 'SMO128G0017' => 'smo', 'SMO143G0039' => 'smo', 'SMO143G0067' => 'smo', 'SMO143G0211' => 'smo', 'SMO301G0080' => 'smo', 'SMO351G0199' => 'smo', 'SMO351G0264' => 'smo', 'SMO367G0671' => 'smo', 'SMO367G0819' => 'smo', 'SMO367G1157' => 'smo', 'SMO367G1169' => 'smo', 'Solyc03g121040.4' => 'sly', 'Solyc05g009960.4' => 'sly', 'Sopen03g039870' => 'spe', 'Sopen05g005770' => 'spe', 'Sp3g19420' => 'spa', 'TAR376G0448' => 'tar', 'TAR376G1089' => 'tar', 'TAR383G0498' => 'tar', 'TAR383G0540' => 'tar', 'TAR383G0797' => 'tar', 'TAR628G0198' => 'tar', 'THA.LOC104810545' => 'tha', 'Thecc.02G362800' => 'tca', 'Thecc.06G100300' => 'tca', 'Thhalv10021117m.g' => 'esa', 'TPR.G2681' => 'tpr', 'TPR.G6535' => 'tpr', 'TWI12G1086' => 'twi', 'TWI75G0766' => 'twi', 'TWI75G1022' => 'twi', 'unitig_32.g10988' => 'ugi', 'vmacro10517' => 'vma', 'vmacro10518' => 'vma', 'vmacro10519' => 'vma', 'vmacro10520' => 'vma', 'vmacro18850' => 'vma', 'VMungo1080G0805' => 'vmu', 'VMungo1215G3053' => 'vmu', 'Zm00001eb121420' => 'zma', 'Zm00001eb121460' => 'zma', 'Zm00001eb178510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001868' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001868' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001868' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001868' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001868', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '352', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p09860' => 'bna', 'A05p26380' => 'bna', 'A05p27240' => 'bna', 'A07p01500' => 'bna', 'Aa31LG8G8070' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3176' => 'aag', 'Actinidia13683' => 'ach', 'Actinidia14842' => 'ach', 'Actinidia16607' => 'ach', 'Actinidia32100' => 'ach', 'Actinidia38401' => 'ach', 'Ah.01g022100' => 'amhyb', 'Ah.01g022130' => 'amhyb', 'AL3G35430' => 'aly', 'Aqoxy3G03877' => 'aox', 'Aqoxy5G00470' => 'aox', 'Aqoxy7G03934' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5H969I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20K5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2FDBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENMN1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H3WDBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1LRBA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R322MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TE5PEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1UUGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9WMHM' => 'arhy', 'AT3G21360' => 'ath', 'ATR0705G178' => 'atr', 'ATR1136G032' => 'atr', 'ATR1136G086' => 'atr', 'ATR1136G094' => 'atr', 'ATR1136G104' => 'atr', 'ATR1136G123' => 'atr', 'ATR1136G189' => 'atr', 'ATR1136G196' => 'atr', 'ATR1136G210' => 'atr', 'ATR1136G214' => 'atr', 'ATR1136G219' => 'atr', 'Atru.chr11.1375' => 'acertr', 'Atru.chr11.1376' => 'acertr', 'Atru.chr11.1377' => 'acertr', 'Atru.chr11.1378' => 'acertr', 'AUR62022211' => 'cqu', 'AUR62031925' => 'cqu', 'BcaB06g26234' => 'bca', 'BcaC05g28171' => 'bca', 'BolC5t32938H' => 'bol', 'BraA04t18026Z' => 'bra', 'BraA05t21512Z' => 'bra', 'BraA05t21613Z' => 'bra', 'C05p42080' => 'bna', 'C08p18970' => 'bna', 'C09p61870' => 'bna', 'CAN.G1143.15' => 'can', 'CAN.G184.75' => 'can', 'CANSAT56G0768' => 'cansat', 'CANSAT64G1424' => 'cansat', 'CARHR097310' => 'chi', 'Carub.0003s2141' => 'cru', 'Ca_01166_v3' => 'car', 'Ca_05067_v3' => 'car', 'Cc04_g02530' => 'ccan', 'Cc11_g10740' => 'ccan', 'CDE05G1609' => 'cde', 'Cfa003643' => 'cfa', 'Cfa003645' => 'cfa', 'Cfa018646' => 'cfa', 'Cfa018647' => 'cfa', 'Cfa018685' => 'cfa', 'Ciclev10025881m.g' => 'ccl', 'Ciclev10026083m.g' => 'ccl', 'Ciclev10033372m.g' => 'ccl', 'CiPaw.01G231200' => 'cil', 'CiPaw.02G145700' => 'cil', 'CiPaw.15G002400' => 'cil', 'ClCG01G005750' => 'cla', 'ClCG09G000230' => 'cla', 'COL.COLO4_07856' => 'col', 'COL.COLO4_30516' => 'col', 'Cpa.g.sc1.233' => 'cpa', 'Cpa.g.sc25.16' => 'cpa', 'CsaV3_5G028940' => 'csa', 'CsaV3_7G035260' => 'csa', 'CSS0004774' => 'camsi', 'CSS0020354' => 'camsi', 'CSS0026529' => 'camsi', 'CSS0041135' => 'camsi', 'CSS0043311' => 'camsi', 'DCAR_023692' => 'dca', 'DCAR_026353' => 'dca', 'Dinv16519' => 'din', 'Dinv16520' => 'din', 'Dinv16521' => 'din', 'Dinv37975' => 'din', 'Duzib235G0857' => 'dzi', 'Duzib248G0276' => 'dzi', 'Duzib251G0347' => 'dzi', 'ECA232G1666' => 'eca', 'ECA232G1795' => 'eca', 'ECA232G1884' => 'eca', 'ECA232G2480' => 'eca', 'ECA232G3373' => 'eca', 'ECA232G3703' => 'eca', 'ECA232G5045' => 'eca', 'ECA234G4751' => 'eca', 'ECA246G4861' => 'eca', 'ECA247G1336' => 'eca', 'ECA247G1926' => 'eca', 'ECA248G1773' => 'eca', 'ECA248G2019' => 'eca', 'EL10Ac9g21201' => 'bvu', 'Eucgr.B03062' => 'egr', 'Eucgr.B03063' => 'egr', 'Eucgr.J02936' => 'egr', 'FAN02G0984' => 'fan', 'FAN05G0641' => 'fan', 'FAN07G0238' => 'fan', 'FAN09G3289' => 'fan', 'FAN12G1827' => 'fan', 'FAN14G0299' => 'fan', 'FAN17G2056' => 'fan', 'FAN22G1034' => 'fan', 'FvH4_4g28230' => 'fve', 'FvH4_6g32420' => 'fve', 'Glyma.01G089800' => 'gma', 'Glyma.02G101400' => 'gma', 'Glyma.15G019700' => 'gma', 'Gohir.A06G189700' => 'ghi', 'Gohir.A12G172200' => 'ghi', 'Gohir.D06G198100' => 'ghi', 'Gohir.D12G174600' => 'ghi', 'Gorai.008G187300' => 'gra', 'Gorai.010G230900' => 'gra', 'Gorai.010G231000' => 'gra', 'GSVIVG01011970001' => 'vvi', 'GSVIVG01016977001' => 'vvi', 'GSVIVG01016978001' => 'vvi', 'HanXRQChr05g0139171' => 'han', 'HanXRQChr05g0139181' => 'han', 'HanXRQChr05g0162581' => 'han', 'HanXRQChr08g0227201' => 'han', 'HanXRQChr09g0275611' => 'han', 'HanXRQChr09g0275621' => 'han', 'HanXRQChr09g0275631' => 'han', 'HanXRQChr09g0275641' => 'han', 'HanXRQChr09g0275651' => 'han', 'HanXRQChr09g0276271' => 'han', 'HanXRQChr10g0280781' => 'han', 'HanXRQChr10g0280841' => 'han', 'HanXRQChr10g0280871' => 'han', 'HanXRQChr15g0472091' => 'han', 'HanXRQChr15g0476021' => 'han', 'Haze_15851' => 'cav', 'Haze_17422' => 'cav', 'Haze_17423' => 'cav', 'Hma1.2p1_0430F.1_g151380' => 'hma', 'Hma1.2p1_0605F.1_g187840' => 'hma', 'Hma1.2p1_1207F.1_g267023' => 'hma', 'Hma1.2p1_1207F.1_g267026' => 'hma', 'HPP92_003620' => 'vpl', 'HPP92_004471' => 'vpl', 'HPP92_004472' => 'vpl', 'HPP92_004473' => 'vpl', 'HPP92_004474' => 'vpl', 'HPP92_004482' => 'vpl', 'HPP92_004483' => 'vpl', 'HPP92_004484' => 'vpl', 'HPP92_005416' => 'vpl', 'Hund00695' => 'sun', 'Lalb_Chr22g0351561' => 'lal', 'Lj2g0012278' => 'lja', 'Lj3A1021T35' => 'lonja', 'Lj3g0017675' => 'lja', 'Lj9A513G54' => 'lonja', 'Lsat_1_v5_gn_0_20960' => 'lsa', 'Lsat_1_v5_gn_1_118801' => 'lsa', 'Lsat_1_v5_gn_1_119000' => 'lsa', 'Lsat_1_v5_gn_1_119060' => 'lsa', 'Lsat_1_v5_gn_1_36780' => 'lsa', 'Lsat_1_v5_gn_3_57321' => 'lsa', 'Lsat_1_v5_gn_3_57360' => 'lsa', 'Lsat_1_v5_gn_4_87081' => 'lsa', 'Lsat_1_v5_gn_4_97380' => 'lsa', 'Lsat_1_v5_gn_4_97640' => 'lsa', 'Lsat_1_v5_gn_4_98661' => 'lsa', 'Lsat_1_v5_gn_4_98761' => 'lsa', 'Lsat_1_v5_gn_4_98781' => 'lsa', 'Lsat_1_v5_gn_4_98941' => 'lsa', 'Lsat_1_v5_gn_4_99021' => 'lsa', 'Lsat_1_v5_gn_4_99241' => 'lsa', 'Lsat_1_v5_gn_4_99281' => 'lsa', 'Lsat_1_v5_gn_4_99301' => 'lsa', 'Manes.06G073700' => 'mes', 'Manes.06G073800' => 'mes', 'Manes.11G033300' => 'mes', 'Manes.14G096400' => 'mes', 'Mapoly0024s0085' => 'mpo', 'Mapoly0064s0118' => 'mpo', 'Mapoly0070s0057' => 'mpo', 'MBI04_g20308_MAGBIO' => 'mbi', 'MBI04_g37503_MAGBIO' => 'mbi', 'MBI06_g35219_MAGBIO' => 'mbi', 'MBI06_g35221_MAGBIO' => 'mbi', 'MBI06_g39484_MAGBIO' => 'mbi', 'MBI06_g42849_MAGBIO' => 'mbi', 'MCO10G227' => 'mco', 'MD09G1202600' => 'mdo', 'MD10G1294600' => 'mdo', 'MD10G1294700' => 'mdo', 'MD13G1048200' => 'mdo', 'MD13G1048300' => 'mdo', 'MD17G1183800' => 'mdo', 'Medtr0021s0370' => 'mtr', 'Medtr0681s0020' => 'mtr', 'Medtr2g100850' => 'mtr', 'MELO3C005355.2' => 'cme', 'MELO3C024436.2' => 'cme', 'Migut.D01564' => 'egut', 'Migut.I00895' => 'egut', 'Migut.L01104' => 'egut', 'MSTRG.22637' => 'ama', 'Nitab4.5_0004705g0060' => 'nta', 'Nitab4.5_0004969g0010' => 'nta', 'Nitab4.5_0008646g0020' => 'nta', 'Nitab4.5_0009780g0030' => 'nta', 'Nn5g27565' => 'nnu', 'Nn6g35324' => 'nnu', 'Oeu017123.1' => 'oeu', 'Oeu024106.1' => 'oeu', 'Oeu026774.1' => 'oeu', 'Os01g0190000' => 'osa', 'Os08g0383800' => 'osa', 'Peaxi162Scf00038g01029' => 'pax', 'Peaxi162Scf00367g00738' => 'pax', 'PGR102G1579' => 'pgr', 'PGR102G2805' => 'pgr', 'PGSC0003DMG400000821' => 'stu', 'PGSC0003DMG400002609' => 'stu', 'Phvul.003G025800' => 'pvu', 'Phvul.005G166000' => 'pvu', 'Potri.001G190100' => 'ptr', 'Potri.010G131200' => 'ptr', 'Potri.010G131300' => 'ptr', 'Pp3c15_16500' => 'ppa', 'Prupe.1G303900' => 'ppe', 'Prupe.3G058800' => 'ppe', 'Psat0s308g0040' => 'psa', 'Psat5g295640' => 'psa', 'PSO210G1329' => 'pso', 'PSO210G2028' => 'pso', 'PSO210G3782' => 'pso', 'QL01p000968' => 'qlo', 'QL01p000982' => 'qlo', 'QL05p019843' => 'qlo', 'QL05p019867' => 'qlo', 'QL05p019896' => 'qlo', 'RcHm_v2.0_Chr2g0115841' => 'rch', 'RcHm_v2.0_Chr2g0140561' => 'rch', 'RcHm_v2.0_Chr2g0140571' => 'rch', 'RcHm_v2.0_Chr4g0436031' => 'rch', 'Rhsim08G0227800' => 'rsi', 'Rhsim09G0113500' => 'rsi', 'Rhsim09G0113700' => 'rsi', 'Sabra01G0151700' => 'sbr', 'Sabra10G0100000' => 'sbr', 'Sabra10G0100100' => 'sbr', 'Sabra10G0100200' => 'sbr', 'Sabra17G0067300' => 'sbr', 'SalBow1G0023' => 'sbo', 'SalBow1G1703' => 'sbo', 'SalBow1G3178' => 'sbo', 'SalBow1G5885' => 'sbo', 'SalBow1G6692' => 'sbo', 'SalBow2G3054' => 'sbo', 'SalBow8G5517' => 'sbo', 'Sc15g0001870' => 'sci', 'Sed0019394' => 'sed', 'Sed0020302' => 'sed', 'SEGI_05826' => 'sgi', 'SEGI_06969' => 'sgi', 'SEGI_07621' => 'sgi', 'SEGI_09785' => 'sgi', 'SEGI_10179' => 'sgi', 'SEGI_14098' => 'sgi', 'SEGI_14308' => 'sgi', 'SEGI_14853' => 'sgi', 'SEGI_16411' => 'sgi', 'SEGI_16437' => 'sgi', 'SEGI_17272' => 'sgi', 'SEGI_18305' => 'sgi', 'SEGI_23127' => 'sgi', 'SEGI_23539' => 'sgi', 'SEGI_24620' => 'sgi', 'SEGI_24732' => 'sgi', 'SEGI_25628' => 'sgi', 'SEGI_25841' => 'sgi', 'SEGI_25991' => 'sgi', 'SEGI_30406' => 'sgi', 'SEGI_31636' => 'sgi', 'SEGI_33028' => 'sgi', 'SEGI_33247' => 'sgi', 'SEGI_35478' => 'sgi', 'SEGI_36061' => 'sgi', 'SEGI_37115' => 'sgi', 'SEGI_38242' => 'sgi', 'SEGI_40244' => 'sgi', 'SEGI_40880' => 'sgi', 'SGA_v2.0_scaffold66G22527' => 'sas', 'SMO118G0386' => 'smo', 'SMO128G0017' => 'smo', 'SMO143G0039' => 'smo', 'SMO143G0067' => 'smo', 'SMO143G0211' => 'smo', 'SMO301G0080' => 'smo', 'SMO351G0199' => 'smo', 'SMO351G0264' => 'smo', 'SMO367G0671' => 'smo', 'SMO367G0819' => 'smo', 'SMO367G1157' => 'smo', 'SMO367G1169' => 'smo', 'Solyc03g121040.4' => 'sly', 'Solyc05g009960.4' => 'sly', 'Sopen03g039870' => 'spe', 'Sopen05g005770' => 'spe', 'Sp3g19420' => 'spa', 'TAR376G0448' => 'tar', 'TAR376G1089' => 'tar', 'TAR383G0498' => 'tar', 'TAR383G0540' => 'tar', 'TAR383G0797' => 'tar', 'TAR628G0198' => 'tar', 'THA.LOC104810545' => 'tha', 'Thecc.02G362800' => 'tca', 'Thecc.06G100300' => 'tca', 'Thhalv10021117m.g' => 'esa', 'TPR.G2681' => 'tpr', 'TPR.G6535' => 'tpr', 'TWI12G1086' => 'twi', 'TWI75G0766' => 'twi', 'TWI75G1022' => 'twi', 'unitig_32.g10988' => 'ugi', 'vmacro10517' => 'vma', 'vmacro10518' => 'vma', 'vmacro10519' => 'vma', 'vmacro10520' => 'vma', 'vmacro18850' => 'vma', 'VMungo1080G0805' => 'vmu', 'VMungo1215G3053' => 'vmu', 'Zm00001eb121420' => 'zma', 'Zm00001eb121460' => 'zma', 'Zm00001eb178510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001868', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001868' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001868', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '352', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001868' ) ), 'genes' => array( 'A03p09860' => 'bna', 'A05p26380' => 'bna', 'A05p27240' => 'bna', 'A07p01500' => 'bna', 'Aa31LG8G8070' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3176' => 'aag', 'Actinidia13683' => 'ach', 'Actinidia14842' => 'ach', 'Actinidia16607' => 'ach', 'Actinidia32100' => 'ach', 'Actinidia38401' => 'ach', 'Ah.01g022100' => 'amhyb', 'Ah.01g022130' => 'amhyb', 'AL3G35430' => 'aly', 'Aqoxy3G03877' => 'aox', 'Aqoxy5G00470' => 'aox', 'Aqoxy7G03934' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5H969I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20K5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2FDBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENMN1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H3WDBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1LRBA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R322MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TE5PEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1UUGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9WMHM' => 'arhy', 'AT3G21360' => 'ath', 'ATR0705G178' => 'atr', 'ATR1136G032' => 'atr', 'ATR1136G086' => 'atr', 'ATR1136G094' => 'atr', 'ATR1136G104' => 'atr', 'ATR1136G123' => 'atr', 'ATR1136G189' => 'atr', 'ATR1136G196' => 'atr', 'ATR1136G210' => 'atr', 'ATR1136G214' => 'atr', 'ATR1136G219' => 'atr', 'Atru.chr11.1375' => 'acertr', 'Atru.chr11.1376' => 'acertr', 'Atru.chr11.1377' => 'acertr', 'Atru.chr11.1378' => 'acertr', 'AUR62022211' => 'cqu', 'AUR62031925' => 'cqu', 'BcaB06g26234' => 'bca', 'BcaC05g28171' => 'bca', 'BolC5t32938H' => 'bol', 'BraA04t18026Z' => 'bra', 'BraA05t21512Z' => 'bra', 'BraA05t21613Z' => 'bra', 'C05p42080' => 'bna', 'C08p18970' => 'bna', 'C09p61870' => 'bna', 'CAN.G1143.15' => 'can', 'CAN.G184.75' => 'can', 'CANSAT56G0768' => 'cansat', 'CANSAT64G1424' => 'cansat', 'CARHR097310' => 'chi', 'Carub.0003s2141' => 'cru', 'Ca_01166_v3' => 'car', 'Ca_05067_v3' => 'car', 'Cc04_g02530' => 'ccan', 'Cc11_g10740' => 'ccan', 'CDE05G1609' => 'cde', 'Cfa003643' => 'cfa', 'Cfa003645' => 'cfa', 'Cfa018646' => 'cfa', 'Cfa018647' => 'cfa', 'Cfa018685' => 'cfa', 'Ciclev10025881m.g' => 'ccl', 'Ciclev10026083m.g' => 'ccl', 'Ciclev10033372m.g' => 'ccl', 'CiPaw.01G231200' => 'cil', 'CiPaw.02G145700' => 'cil', 'CiPaw.15G002400' => 'cil', 'ClCG01G005750' => 'cla', 'ClCG09G000230' => 'cla', 'COL.COLO4_07856' => 'col', 'COL.COLO4_30516' => 'col', 'Cpa.g.sc1.233' => 'cpa', 'Cpa.g.sc25.16' => 'cpa', 'CsaV3_5G028940' => 'csa', 'CsaV3_7G035260' => 'csa', 'CSS0004774' => 'camsi', 'CSS0020354' => 'camsi', 'CSS0026529' => 'camsi', 'CSS0041135' => 'camsi', 'CSS0043311' => 'camsi', 'DCAR_023692' => 'dca', 'DCAR_026353' => 'dca', 'Dinv16519' => 'din', 'Dinv16520' => 'din', 'Dinv16521' => 'din', 'Dinv37975' => 'din', 'Duzib235G0857' => 'dzi', 'Duzib248G0276' => 'dzi', 'Duzib251G0347' => 'dzi', 'ECA232G1666' => 'eca', 'ECA232G1795' => 'eca', 'ECA232G1884' => 'eca', 'ECA232G2480' => 'eca', 'ECA232G3373' => 'eca', 'ECA232G3703' => 'eca', 'ECA232G5045' => 'eca', 'ECA234G4751' => 'eca', 'ECA246G4861' => 'eca', 'ECA247G1336' => 'eca', 'ECA247G1926' => 'eca', 'ECA248G1773' => 'eca', 'ECA248G2019' => 'eca', 'EL10Ac9g21201' => 'bvu', 'Eucgr.B03062' => 'egr', 'Eucgr.B03063' => 'egr', 'Eucgr.J02936' => 'egr', 'FAN02G0984' => 'fan', 'FAN05G0641' => 'fan', 'FAN07G0238' => 'fan', 'FAN09G3289' => 'fan', 'FAN12G1827' => 'fan', 'FAN14G0299' => 'fan', 'FAN17G2056' => 'fan', 'FAN22G1034' => 'fan', 'FvH4_4g28230' => 'fve', 'FvH4_6g32420' => 'fve', 'Glyma.01G089800' => 'gma', 'Glyma.02G101400' => 'gma', 'Glyma.15G019700' => 'gma', 'Gohir.A06G189700' => 'ghi', 'Gohir.A12G172200' => 'ghi', 'Gohir.D06G198100' => 'ghi', 'Gohir.D12G174600' => 'ghi', 'Gorai.008G187300' => 'gra', 'Gorai.010G230900' => 'gra', 'Gorai.010G231000' => 'gra', 'GSVIVG01011970001' => 'vvi', 'GSVIVG01016977001' => 'vvi', 'GSVIVG01016978001' => 'vvi', 'HanXRQChr05g0139171' => 'han', 'HanXRQChr05g0139181' => 'han', 'HanXRQChr05g0162581' => 'han', 'HanXRQChr08g0227201' => 'han', 'HanXRQChr09g0275611' => 'han', 'HanXRQChr09g0275621' => 'han', 'HanXRQChr09g0275631' => 'han', 'HanXRQChr09g0275641' => 'han', 'HanXRQChr09g0275651' => 'han', 'HanXRQChr09g0276271' => 'han', 'HanXRQChr10g0280781' => 'han', 'HanXRQChr10g0280841' => 'han', 'HanXRQChr10g0280871' => 'han', 'HanXRQChr15g0472091' => 'han', 'HanXRQChr15g0476021' => 'han', 'Haze_15851' => 'cav', 'Haze_17422' => 'cav', 'Haze_17423' => 'cav', 'Hma1.2p1_0430F.1_g151380' => 'hma', 'Hma1.2p1_0605F.1_g187840' => 'hma', 'Hma1.2p1_1207F.1_g267023' => 'hma', 'Hma1.2p1_1207F.1_g267026' => 'hma', 'HPP92_003620' => 'vpl', 'HPP92_004471' => 'vpl', 'HPP92_004472' => 'vpl', 'HPP92_004473' => 'vpl', 'HPP92_004474' => 'vpl', 'HPP92_004482' => 'vpl', 'HPP92_004483' => 'vpl', 'HPP92_004484' => 'vpl', 'HPP92_005416' => 'vpl', 'Hund00695' => 'sun', 'Lalb_Chr22g0351561' => 'lal', 'Lj2g0012278' => 'lja', 'Lj3A1021T35' => 'lonja', 'Lj3g0017675' => 'lja', 'Lj9A513G54' => 'lonja', 'Lsat_1_v5_gn_0_20960' => 'lsa', 'Lsat_1_v5_gn_1_118801' => 'lsa', 'Lsat_1_v5_gn_1_119000' => 'lsa', 'Lsat_1_v5_gn_1_119060' => 'lsa', 'Lsat_1_v5_gn_1_36780' => 'lsa', 'Lsat_1_v5_gn_3_57321' => 'lsa', 'Lsat_1_v5_gn_3_57360' => 'lsa', 'Lsat_1_v5_gn_4_87081' => 'lsa', 'Lsat_1_v5_gn_4_97380' => 'lsa', 'Lsat_1_v5_gn_4_97640' => 'lsa', 'Lsat_1_v5_gn_4_98661' => 'lsa', 'Lsat_1_v5_gn_4_98761' => 'lsa', 'Lsat_1_v5_gn_4_98781' => 'lsa', 'Lsat_1_v5_gn_4_98941' => 'lsa', 'Lsat_1_v5_gn_4_99021' => 'lsa', 'Lsat_1_v5_gn_4_99241' => 'lsa', 'Lsat_1_v5_gn_4_99281' => 'lsa', 'Lsat_1_v5_gn_4_99301' => 'lsa', 'Manes.06G073700' => 'mes', 'Manes.06G073800' => 'mes', 'Manes.11G033300' => 'mes', 'Manes.14G096400' => 'mes', 'Mapoly0024s0085' => 'mpo', 'Mapoly0064s0118' => 'mpo', 'Mapoly0070s0057' => 'mpo', 'MBI04_g20308_MAGBIO' => 'mbi', 'MBI04_g37503_MAGBIO' => 'mbi', 'MBI06_g35219_MAGBIO' => 'mbi', 'MBI06_g35221_MAGBIO' => 'mbi', 'MBI06_g39484_MAGBIO' => 'mbi', 'MBI06_g42849_MAGBIO' => 'mbi', 'MCO10G227' => 'mco', 'MD09G1202600' => 'mdo', 'MD10G1294600' => 'mdo', 'MD10G1294700' => 'mdo', 'MD13G1048200' => 'mdo', 'MD13G1048300' => 'mdo', 'MD17G1183800' => 'mdo', 'Medtr0021s0370' => 'mtr', 'Medtr0681s0020' => 'mtr', 'Medtr2g100850' => 'mtr', 'MELO3C005355.2' => 'cme', 'MELO3C024436.2' => 'cme', 'Migut.D01564' => 'egut', 'Migut.I00895' => 'egut', 'Migut.L01104' => 'egut', 'MSTRG.22637' => 'ama', 'Nitab4.5_0004705g0060' => 'nta', 'Nitab4.5_0004969g0010' => 'nta', 'Nitab4.5_0008646g0020' => 'nta', 'Nitab4.5_0009780g0030' => 'nta', 'Nn5g27565' => 'nnu', 'Nn6g35324' => 'nnu', 'Oeu017123.1' => 'oeu', 'Oeu024106.1' => 'oeu', 'Oeu026774.1' => 'oeu', 'Os01g0190000' => 'osa', 'Os08g0383800' => 'osa', 'Peaxi162Scf00038g01029' => 'pax', 'Peaxi162Scf00367g00738' => 'pax', 'PGR102G1579' => 'pgr', 'PGR102G2805' => 'pgr', 'PGSC0003DMG400000821' => 'stu', 'PGSC0003DMG400002609' => 'stu', 'Phvul.003G025800' => 'pvu', 'Phvul.005G166000' => 'pvu', 'Potri.001G190100' => 'ptr', 'Potri.010G131200' => 'ptr', 'Potri.010G131300' => 'ptr', 'Pp3c15_16500' => 'ppa', 'Prupe.1G303900' => 'ppe', 'Prupe.3G058800' => 'ppe', 'Psat0s308g0040' => 'psa', 'Psat5g295640' => 'psa', 'PSO210G1329' => 'pso', 'PSO210G2028' => 'pso', 'PSO210G3782' => 'pso', 'QL01p000968' => 'qlo', 'QL01p000982' => 'qlo', 'QL05p019843' => 'qlo', 'QL05p019867' => 'qlo', 'QL05p019896' => 'qlo', 'RcHm_v2.0_Chr2g0115841' => 'rch', 'RcHm_v2.0_Chr2g0140561' => 'rch', 'RcHm_v2.0_Chr2g0140571' => 'rch', 'RcHm_v2.0_Chr4g0436031' => 'rch', 'Rhsim08G0227800' => 'rsi', 'Rhsim09G0113500' => 'rsi', 'Rhsim09G0113700' => 'rsi', 'Sabra01G0151700' => 'sbr', 'Sabra10G0100000' => 'sbr', 'Sabra10G0100100' => 'sbr', 'Sabra10G0100200' => 'sbr', 'Sabra17G0067300' => 'sbr', 'SalBow1G0023' => 'sbo', 'SalBow1G1703' => 'sbo', 'SalBow1G3178' => 'sbo', 'SalBow1G5885' => 'sbo', 'SalBow1G6692' => 'sbo', 'SalBow2G3054' => 'sbo', 'SalBow8G5517' => 'sbo', 'Sc15g0001870' => 'sci', 'Sed0019394' => 'sed', 'Sed0020302' => 'sed', 'SEGI_05826' => 'sgi', 'SEGI_06969' => 'sgi', 'SEGI_07621' => 'sgi', 'SEGI_09785' => 'sgi', 'SEGI_10179' => 'sgi', 'SEGI_14098' => 'sgi', 'SEGI_14308' => 'sgi', 'SEGI_14853' => 'sgi', 'SEGI_16411' => 'sgi', 'SEGI_16437' => 'sgi', 'SEGI_17272' => 'sgi', 'SEGI_18305' => 'sgi', 'SEGI_23127' => 'sgi', 'SEGI_23539' => 'sgi', 'SEGI_24620' => 'sgi', 'SEGI_24732' => 'sgi', 'SEGI_25628' => 'sgi', 'SEGI_25841' => 'sgi', 'SEGI_25991' => 'sgi', 'SEGI_30406' => 'sgi', 'SEGI_31636' => 'sgi', 'SEGI_33028' => 'sgi', 'SEGI_33247' => 'sgi', 'SEGI_35478' => 'sgi', 'SEGI_36061' => 'sgi', 'SEGI_37115' => 'sgi', 'SEGI_38242' => 'sgi', 'SEGI_40244' => 'sgi', 'SEGI_40880' => 'sgi', 'SGA_v2.0_scaffold66G22527' => 'sas', 'SMO118G0386' => 'smo', 'SMO128G0017' => 'smo', 'SMO143G0039' => 'smo', 'SMO143G0067' => 'smo', 'SMO143G0211' => 'smo', 'SMO301G0080' => 'smo', 'SMO351G0199' => 'smo', 'SMO351G0264' => 'smo', 'SMO367G0671' => 'smo', 'SMO367G0819' => 'smo', 'SMO367G1157' => 'smo', 'SMO367G1169' => 'smo', 'Solyc03g121040.4' => 'sly', 'Solyc05g009960.4' => 'sly', 'Sopen03g039870' => 'spe', 'Sopen05g005770' => 'spe', 'Sp3g19420' => 'spa', 'TAR376G0448' => 'tar', 'TAR376G1089' => 'tar', 'TAR383G0498' => 'tar', 'TAR383G0540' => 'tar', 'TAR383G0797' => 'tar', 'TAR628G0198' => 'tar', 'THA.LOC104810545' => 'tha', 'Thecc.02G362800' => 'tca', 'Thecc.06G100300' => 'tca', 'Thhalv10021117m.g' => 'esa', 'TPR.G2681' => 'tpr', 'TPR.G6535' => 'tpr', 'TWI12G1086' => 'twi', 'TWI75G0766' => 'twi', 'TWI75G1022' => 'twi', 'unitig_32.g10988' => 'ugi', 'vmacro10517' => 'vma', 'vmacro10518' => 'vma', 'vmacro10519' => 'vma', 'vmacro10520' => 'vma', 'vmacro18850' => 'vma', 'VMungo1080G0805' => 'vmu', 'VMungo1215G3053' => 'vmu', 'Zm00001eb121420' => 'zma', 'Zm00001eb121460' => 'zma', 'Zm00001eb178510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001868' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001868' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001868' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001868' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151