Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '361', 'num_species' => '76' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p06190' => 'bna', 'A01p06200' => 'bna', 'A01p06210' => 'bna', 'A01p06720' => 'bna', 'A01p06730' => 'bna', 'A01p06740' => 'bna', 'A02p29300' => 'bna', 'A02p29320' => 'bna', 'A02p29330' => 'bna', 'A03p61240' => 'bna', 'A06p46400' => 'bna', 'Aa31LG2G17850' => 'aar', 'Aa31LG2G17870' => 'aar', 'Actinidia22324' => 'ach', 'AL7G19750' => 'aly', 'AL7G19780' => 'aly', 'AL7G19790' => 'aly', 'AL7G19800' => 'aly', 'AL7G19810' => 'aly', 'Aqoxy4G00786' => 'aox', 'Aqoxy5G03160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07A84U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27HQCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D36J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36N5BX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62PV47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW32B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W5KIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUNV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0VXY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1WXPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9XFHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFW6MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1V55D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3P3AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWA25E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUQM4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4PYL' => 'arhy', 'AT4G32090' => 'ath', 'AT4G32100' => 'ath', 'AT4G32105' => 'ath', 'AT4G32110' => 'ath', 'ATR0582G117' => 'atr', 'ATR0582G157' => 'atr', 'ATR0582G316' => 'atr', 'ATR0582G378' => 'atr', 'Atru.chr12.564' => 'acertr', 'Atru.chr6.250' => 'acertr', 'Atru.chr7.2470' => 'acertr', 'Atru.chr7.2473' => 'acertr', 'Atru.chr7.2474' => 'acertr', 'Atru.chr7.2476' => 'acertr', 'AUR62012432' => 'cqu', 'AUR62029426' => 'cqu', 'BcaB03g11963' => 'bca', 'BcaB07g30432' => 'bca', 'BcaB07g30433' => 'bca', 'BcaC03g16784' => 'bca', 'BcaC03g16785' => 'bca', 'BcaC06g31519' => 'bca', 'BcaC06g34407' => 'bca', 'BcaC09g51932' => 'bca', 'BcaC09g51998' => 'bca', 'BcaNung03137' => 'bca', 'BcaNung03138' => 'bca', 'BolC1t00680H' => 'bol', 'BolC1t00681H' => 'bol', 'BolC1t00731H' => 'bol', 'BolC2t10708H' => 'bol', 'BolC7t43441H' => 'bol', 'BolC7t46357H' => 'bol', 'BraA01t00587Z' => 'bra', 'BraA01t00588Z' => 'bra', 'BraA01t00629Z' => 'bra', 'BraA02t07960Z' => 'bra', 'BraA03t15168Z' => 'bra', 'BraA06t27504Z' => 'bra', 'C01p06830' => 'bna', 'C01p06840' => 'bna', 'C01p06850' => 'bna', 'C01p07480' => 'bna', 'C01p07490' => 'bna', 'C01p07500' => 'bna', 'C02p46550' => 'bna', 'C02p46580' => 'bna', 'C02p46590' => 'bna', 'C07p29020' => 'bna', 'C07p59090' => 'bna', 'CAN.G111.7' => 'can', 'CANSAT25G3871' => 'cansat', 'CARHR239990' => 'chi', 'CARHR240000' => 'chi', 'CARHR240010' => 'chi', 'CARHR240020' => 'chi', 'Carub.0007s0845' => 'cru', 'Carub.0007s0846' => 'cru', 'Carub.0007s0847' => 'cru', 'Ca_03322_v3' => 'car', 'CDE02G0050' => 'cde', 'CDE05G3187' => 'cde', 'CDE06G0004' => 'cde', 'Ciclev10009917m.g' => 'ccl', 'Ciclev10010457m.g' => 'ccl', 'CiPaw.08G009300' => 'cil', 'ClCG05G016680' => 'cla', 'ClCG05G016690' => 'cla', 'COL.COLO4_18892' => 'col', 'Cpa.g.sc187.6' => 'cpa', 'CsaV3_3G046170' => 'csa', 'CsaV3_3G046190' => 'csa', 'CsaV3_6G045660' => 'csa', 'DCAR_004364' => 'dca', 'DCAR_015990' => 'dca', 'Dinv24980' => 'din', 'Dinv26451' => 'din', 'Duzib052G0237' => 'dzi', 'Duzib150G1023' => 'dzi', 'Duzib168G0445' => 'dzi', 'ECA246G0220' => 'eca', 'EL10Ac2g04174' => 'bvu', 'EL10Ac6g15442' => 'bvu', 'Eucgr.C01626' => 'egr', 'Eucgr.C01709' => 'egr', 'Eucgr.C02739' => 'egr', 'Eucgr.L02576' => 'egr', 'FAN04G1340' => 'fan', 'FAN04G2963' => 'fan', 'FAN08G2754' => 'fan', 'FAN18G1420' => 'fan', 'FAN18G2855' => 'fan', 'FAN24G1383' => 'fan', 'FAN24G1684' => 'fan', 'FAN24G2268' => 'fan', 'FAN24G2789' => 'fan', 'FAN24G3294' => 'fan', 'FAN27G0609' => 'fan', 'FAN27G2147' => 'fan', 'FAN27G2153' => 'fan', 'FvH4_2g27480' => 'fve', 'FvH4_2g28680' => 'fve', 'FvH4_2g28690' => 'fve', 'FvH4_2g28701' => 'fve', 'FvH4_2g28710' => 'fve', 'FvH4_2g28712' => 'fve', 'FvH4_5g03660' => 'fve', 'FvH4_5g25410' => 'fve', 'Glyma.05G150900' => 'gma', 'Glyma.07G189600' => 'gma', 'Glyma.08G316300' => 'gma', 'Glyma.08G357100' => 'gma', 'Glyma.09G085400' => 'gma', 'Glyma.10G113700' => 'gma', 'Glyma.10G113900' => 'gma', 'Glyma.10G114100' => 'gma', 'Glyma.10G186200' => 'gma', 'Glyma.10G271300' => 'gma', 'Glyma.13G199700' => 'gma', 'Glyma.17G218100' => 'gma', 'Glyma.18G175601' => 'gma', 'Glyma.18G276100' => 'gma', 'Glyma.20G204300' => 'gma', 'Gohir.A07G029700' => 'ghi', 'Gohir.A13G061900' => 'ghi', 'Gohir.D07G033550' => 'ghi', 'Gohir.D13G060100' => 'ghi', 'Gorai.013G068000' => 'gra', 'HanXRQChr03g0079111' => 'han', 'HanXRQChr12g0373391' => 'han', 'HanXRQChr13g0400031' => 'han', 'HanXRQChr16g0511881' => 'han', 'Haze_21485' => 'cav', 'Haze_21486' => 'cav', 'HPP92_015931' => 'vpl', 'HPP92_021690' => 'vpl', 'HPP92_021691' => 'vpl', 'HPP92_021711' => 'vpl', 'HPP92_021712' => 'vpl', 'Lalb_Chr03g0036441' => 'lal', 'Lalb_Chr07g0186891' => 'lal', 'Lalb_Chr07g0186901' => 'lal', 'Lalb_Chr12g0205711' => 'lal', 'Lalb_Chr12g0205721' => 'lal', 'Lalb_Chr13g0294691' => 'lal', 'Lalb_Chr13g0294711' => 'lal', 'Lalb_Chr13g0294721' => 'lal', 'Lalb_Chr17g0336761' => 'lal', 'Lalb_Chr21g0316211' => 'lal', 'Lalb_Chr21g0316231' => 'lal', 'Lj3g0023162' => 'lja', 'Lj4g0004287' => 'lja', 'Lj4g0011737' => 'lja', 'Lj4g0014854' => 'lja', 'Lj4g0019656' => 'lja', 'Lj4g0020170' => 'lja', 'Lj4g0027202' => 'lja', 'Lj5g0009014' => 'lja', 'Lj6g0004190' => 'lja', 'Lj6g0012802' => 'lja', 'Lj6g0014356' => 'lja', 'Lj7E726T0' => 'lonja', 'Lsat_1_v5_gn_1_106201' => 'lsa', 'Lsat_1_v5_gn_6_115761' => 'lsa', 'Lsat_1_v5_gn_6_115781' => 'lsa', 'Lsat_1_v5_gn_6_115820' => 'lsa', 'Lsat_1_v5_gn_6_27980' => 'lsa', 'Lsat_1_v5_gn_6_28121' => 'lsa', 'Manes.02G218600' => 'mes', 'Manes.16G124600' => 'mes', 'MBI07_g01997_MAGBIO' => 'mbi', 'MBI07_g02003_MAGBIO' => 'mbi', 'MBI07_g02004_MAGBIO' => 'mbi', 'MBI18_g29804_MAGBIO' => 'mbi', 'MD08G1079500' => 'mdo', 'MD08G1151500' => 'mdo', 'MD15G1128800' => 'mdo', 'MD15G1128900' => 'mdo', 'Medtr0100s0140' => 'mtr', 'Medtr1g040785' => 'mtr', 'Medtr1g040815' => 'mtr', 'Medtr1g040845' => 'mtr', 'Medtr1g048300' => 'mtr', 'Medtr1g049240' => 'mtr', 'Medtr2g063010' => 'mtr', 'Medtr2g438190' => 'mtr', 'Medtr5g042350' => 'mtr', 'Medtr6g445140' => 'mtr', 'Medtr8g042530' => 'mtr', 'MELO3C003721.2' => 'cme', 'MELO3C033004.2' => 'cme', 'MSTRG.25250' => 'ama', 'Os02g0511600' => 'osa', 'Os11g0222800' => 'osa', 'Os11g0224200' => 'osa', 'Os11g0224301' => 'osa', 'PGR044G0606' => 'pgr', 'PGSC0003DMG400004421' => 'stu', 'Phvul.001G045800' => 'pvu', 'Phvul.002G171300' => 'pvu', 'Phvul.004G057100' => 'pvu', 'Phvul.006G043500' => 'pvu', 'Phvul.007G030200' => 'pvu', 'Phvul.007G030500' => 'pvu', 'Phvul.007G239600' => 'pvu', 'Phvul.008G024700' => 'pvu', 'Phvul.009G216600' => 'pvu', 'Phvul.009G216700' => 'pvu', 'Phvul.010G051700' => 'pvu', 'Potri.004G167900' => 'ptr', 'Potri.006G257600' => 'ptr', 'Potri.009G129400' => 'ptr', 'Prupe.1G484000' => 'ppe', 'Prupe.1G484100' => 'ppe', 'Prupe.1G484200' => 'ppe', 'Psat0s2453g0040' => 'psa', 'Psat0s2453g0080' => 'psa', 'Psat0s2453g0120' => 'psa', 'Psat0s2453g0200' => 'psa', 'Psat0s2453g0240' => 'psa', 'Psat0s3990g0120' => 'psa', 'Psat1g016120' => 'psa', 'Psat3g204760' => 'psa', 'Psat6g048880' => 'psa', 'PSO478G3089' => 'pso', 'PSO478G4527' => 'pso', 'PSO541G0501' => 'pso', 'PSO541G2996' => 'pso', 'PSO541G3291' => 'pso', 'PSO675G0727' => 'pso', 'PSO675G1843' => 'pso', 'PSO675G1869' => 'pso', 'QL02p021022' => 'qlo', 'QL07p000821' => 'qlo', 'QL07p000848' => 'qlo', 'QL07p000880' => 'qlo', 'QL12p013627' => 'qlo', 'QL12p013638' => 'qlo', 'RcHm_v2.0_Chr6g0286461' => 'rch', 'RcHm_v2.0_Chr6g0297451' => 'rch', 'RcHm_v2.0_Chr6g0297461' => 'rch', 'RcHm_v2.0_Chr6g0297491' => 'rch', 'Rhsim04G0089500' => 'rsi', 'Rhsim04G0091300' => 'rsi', 'Rhsim04G0092100' => 'rsi', 'Rhsim04G0092600' => 'rsi', 'Sabra06G0201500' => 'sbr', 'Sabra09G0098900' => 'sbr', 'SalBow6G4108' => 'sbo', 'Sc03g0006280' => 'sci', 'Sc03g0006290' => 'sci', 'Sc06g0000520' => 'sci', 'Sc23g0006630' => 'sci', 'Sed0003642' => 'sed', 'Sed0003760' => 'sed', 'Sed0010450' => 'sed', 'Sed0012505' => 'sed', 'Sed0018471' => 'sed', 'Sed0025130' => 'sed', 'SGA_v2.0_scaffold116G32303' => 'sas', 'SGA_v2.0_scaffold71G23793' => 'sas', 'SGA_v2.0_scaffold71G23794' => 'sas', 'Solyc10g054673.1' => 'sly', 'Solyc10g054677.1' => 'sly', 'Sopen10g024540' => 'spe', 'Sopen10g024580' => 'spe', 'Sp2g10630' => 'spa', 'Sp2g10650' => 'spa', 'Sp2g10660' => 'spa', 'Sp7g29890' => 'spa', 'Sp7g29900' => 'spa', 'SpUn0983_0010' => 'spa', 'SpUn0983_0020' => 'spa', 'TAR371G0865' => 'tar', 'TAR622G0422' => 'tar', 'TAR622G0534' => 'tar', 'TAR622G1058' => 'tar', 'TAR629G0897' => 'tar', 'TAR629G2934' => 'tar', 'THA.LOC104803439' => 'tha', 'THA.LOC104818604' => 'tha', 'THA.LOC104818605' => 'tha', 'THA.LOC104818607' => 'tha', 'THA.LOC104818610' => 'tha', 'THA.LOC104818611' => 'tha', 'Thecc.02G154500' => 'tca', 'Thecc.02G154600' => 'tca', 'Thecc.09G021200' => 'tca', 'Thhalv10001075m.g' => 'esa', 'Thhalv10001150m.g' => 'esa', 'Thhalv10009797m.g' => 'esa', 'Thhalv10026845m.g' => 'esa', 'Thhalv10027525m.g' => 'esa', 'Thhalv10027554m.g' => 'esa', 'TPR.G19813' => 'tpr', 'TPR.G19820' => 'tpr', 'TPR.G3270' => 'tpr', 'TPR.G35350' => 'tpr', 'TPR.G35354' => 'tpr', 'TPR.G35694' => 'tpr', 'TPR.G3595' => 'tpr', 'TPR.G3968' => 'tpr', 'TPR.G3970' => 'tpr', 'TPR.G8' => 'tpr', 'TPR.G9069' => 'tpr', 'TWI34G0730' => 'twi', 'TWI34G0812' => 'twi', 'TWI63G0410' => 'twi', 'TWI63G1514' => 'twi', 'VMungo0331G0458' => 'vmu', 'VMungo0331G0739' => 'vmu', 'VMungo0464G0399' => 'vmu', 'VMungo0464G1322' => 'vmu', 'VMungo0464G1777' => 'vmu', 'VMungo0540G2413' => 'vmu', 'VMungo0720G0118' => 'vmu', 'VMungo0720G1259' => 'vmu', 'VMungo0720G3158' => 'vmu', 'Zm00001eb085230' => 'zma', 'Zm00001eb170490' => 'zma', 'Zm00001eb170500' => 'zma', 'Zm00001eb307030' => 'zma', 'Zm00001eb421200' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001817', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001817' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '361', 'num_species' => '76' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001817' ) ), 'genes' => array( 'A01p06190' => 'bna', 'A01p06200' => 'bna', 'A01p06210' => 'bna', 'A01p06720' => 'bna', 'A01p06730' => 'bna', 'A01p06740' => 'bna', 'A02p29300' => 'bna', 'A02p29320' => 'bna', 'A02p29330' => 'bna', 'A03p61240' => 'bna', 'A06p46400' => 'bna', 'Aa31LG2G17850' => 'aar', 'Aa31LG2G17870' => 'aar', 'Actinidia22324' => 'ach', 'AL7G19750' => 'aly', 'AL7G19780' => 'aly', 'AL7G19790' => 'aly', 'AL7G19800' => 'aly', 'AL7G19810' => 'aly', 'Aqoxy4G00786' => 'aox', 'Aqoxy5G03160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07A84U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27HQCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D36J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36N5BX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62PV47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW32B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W5KIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUNV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0VXY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1WXPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9XFHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFW6MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1V55D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3P3AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWA25E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUQM4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4PYL' => 'arhy', 'AT4G32090' => 'ath', 'AT4G32100' => 'ath', 'AT4G32105' => 'ath', 'AT4G32110' => 'ath', 'ATR0582G117' => 'atr', 'ATR0582G157' => 'atr', 'ATR0582G316' => 'atr', 'ATR0582G378' => 'atr', 'Atru.chr12.564' => 'acertr', 'Atru.chr6.250' => 'acertr', 'Atru.chr7.2470' => 'acertr', 'Atru.chr7.2473' => 'acertr', 'Atru.chr7.2474' => 'acertr', 'Atru.chr7.2476' => 'acertr', 'AUR62012432' => 'cqu', 'AUR62029426' => 'cqu', 'BcaB03g11963' => 'bca', 'BcaB07g30432' => 'bca', 'BcaB07g30433' => 'bca', 'BcaC03g16784' => 'bca', 'BcaC03g16785' => 'bca', 'BcaC06g31519' => 'bca', 'BcaC06g34407' => 'bca', 'BcaC09g51932' => 'bca', 'BcaC09g51998' => 'bca', 'BcaNung03137' => 'bca', 'BcaNung03138' => 'bca', 'BolC1t00680H' => 'bol', 'BolC1t00681H' => 'bol', 'BolC1t00731H' => 'bol', 'BolC2t10708H' => 'bol', 'BolC7t43441H' => 'bol', 'BolC7t46357H' => 'bol', 'BraA01t00587Z' => 'bra', 'BraA01t00588Z' => 'bra', 'BraA01t00629Z' => 'bra', 'BraA02t07960Z' => 'bra', 'BraA03t15168Z' => 'bra', 'BraA06t27504Z' => 'bra', 'C01p06830' => 'bna', 'C01p06840' => 'bna', 'C01p06850' => 'bna', 'C01p07480' => 'bna', 'C01p07490' => 'bna', 'C01p07500' => 'bna', 'C02p46550' => 'bna', 'C02p46580' => 'bna', 'C02p46590' => 'bna', 'C07p29020' => 'bna', 'C07p59090' => 'bna', 'CAN.G111.7' => 'can', 'CANSAT25G3871' => 'cansat', 'CARHR239990' => 'chi', 'CARHR240000' => 'chi', 'CARHR240010' => 'chi', 'CARHR240020' => 'chi', 'Carub.0007s0845' => 'cru', 'Carub.0007s0846' => 'cru', 'Carub.0007s0847' => 'cru', 'Ca_03322_v3' => 'car', 'CDE02G0050' => 'cde', 'CDE05G3187' => 'cde', 'CDE06G0004' => 'cde', 'Ciclev10009917m.g' => 'ccl', 'Ciclev10010457m.g' => 'ccl', 'CiPaw.08G009300' => 'cil', 'ClCG05G016680' => 'cla', 'ClCG05G016690' => 'cla', 'COL.COLO4_18892' => 'col', 'Cpa.g.sc187.6' => 'cpa', 'CsaV3_3G046170' => 'csa', 'CsaV3_3G046190' => 'csa', 'CsaV3_6G045660' => 'csa', 'DCAR_004364' => 'dca', 'DCAR_015990' => 'dca', 'Dinv24980' => 'din', 'Dinv26451' => 'din', 'Duzib052G0237' => 'dzi', 'Duzib150G1023' => 'dzi', 'Duzib168G0445' => 'dzi', 'ECA246G0220' => 'eca', 'EL10Ac2g04174' => 'bvu', 'EL10Ac6g15442' => 'bvu', 'Eucgr.C01626' => 'egr', 'Eucgr.C01709' => 'egr', 'Eucgr.C02739' => 'egr', 'Eucgr.L02576' => 'egr', 'FAN04G1340' => 'fan', 'FAN04G2963' => 'fan', 'FAN08G2754' => 'fan', 'FAN18G1420' => 'fan', 'FAN18G2855' => 'fan', 'FAN24G1383' => 'fan', 'FAN24G1684' => 'fan', 'FAN24G2268' => 'fan', 'FAN24G2789' => 'fan', 'FAN24G3294' => 'fan', 'FAN27G0609' => 'fan', 'FAN27G2147' => 'fan', 'FAN27G2153' => 'fan', 'FvH4_2g27480' => 'fve', 'FvH4_2g28680' => 'fve', 'FvH4_2g28690' => 'fve', 'FvH4_2g28701' => 'fve', 'FvH4_2g28710' => 'fve', 'FvH4_2g28712' => 'fve', 'FvH4_5g03660' => 'fve', 'FvH4_5g25410' => 'fve', 'Glyma.05G150900' => 'gma', 'Glyma.07G189600' => 'gma', 'Glyma.08G316300' => 'gma', 'Glyma.08G357100' => 'gma', 'Glyma.09G085400' => 'gma', 'Glyma.10G113700' => 'gma', 'Glyma.10G113900' => 'gma', 'Glyma.10G114100' => 'gma', 'Glyma.10G186200' => 'gma', 'Glyma.10G271300' => 'gma', 'Glyma.13G199700' => 'gma', 'Glyma.17G218100' => 'gma', 'Glyma.18G175601' => 'gma', 'Glyma.18G276100' => 'gma', 'Glyma.20G204300' => 'gma', 'Gohir.A07G029700' => 'ghi', 'Gohir.A13G061900' => 'ghi', 'Gohir.D07G033550' => 'ghi', 'Gohir.D13G060100' => 'ghi', 'Gorai.013G068000' => 'gra', 'HanXRQChr03g0079111' => 'han', 'HanXRQChr12g0373391' => 'han', 'HanXRQChr13g0400031' => 'han', 'HanXRQChr16g0511881' => 'han', 'Haze_21485' => 'cav', 'Haze_21486' => 'cav', 'HPP92_015931' => 'vpl', 'HPP92_021690' => 'vpl', 'HPP92_021691' => 'vpl', 'HPP92_021711' => 'vpl', 'HPP92_021712' => 'vpl', 'Lalb_Chr03g0036441' => 'lal', 'Lalb_Chr07g0186891' => 'lal', 'Lalb_Chr07g0186901' => 'lal', 'Lalb_Chr12g0205711' => 'lal', 'Lalb_Chr12g0205721' => 'lal', 'Lalb_Chr13g0294691' => 'lal', 'Lalb_Chr13g0294711' => 'lal', 'Lalb_Chr13g0294721' => 'lal', 'Lalb_Chr17g0336761' => 'lal', 'Lalb_Chr21g0316211' => 'lal', 'Lalb_Chr21g0316231' => 'lal', 'Lj3g0023162' => 'lja', 'Lj4g0004287' => 'lja', 'Lj4g0011737' => 'lja', 'Lj4g0014854' => 'lja', 'Lj4g0019656' => 'lja', 'Lj4g0020170' => 'lja', 'Lj4g0027202' => 'lja', 'Lj5g0009014' => 'lja', 'Lj6g0004190' => 'lja', 'Lj6g0012802' => 'lja', 'Lj6g0014356' => 'lja', 'Lj7E726T0' => 'lonja', 'Lsat_1_v5_gn_1_106201' => 'lsa', 'Lsat_1_v5_gn_6_115761' => 'lsa', 'Lsat_1_v5_gn_6_115781' => 'lsa', 'Lsat_1_v5_gn_6_115820' => 'lsa', 'Lsat_1_v5_gn_6_27980' => 'lsa', 'Lsat_1_v5_gn_6_28121' => 'lsa', 'Manes.02G218600' => 'mes', 'Manes.16G124600' => 'mes', 'MBI07_g01997_MAGBIO' => 'mbi', 'MBI07_g02003_MAGBIO' => 'mbi', 'MBI07_g02004_MAGBIO' => 'mbi', 'MBI18_g29804_MAGBIO' => 'mbi', 'MD08G1079500' => 'mdo', 'MD08G1151500' => 'mdo', 'MD15G1128800' => 'mdo', 'MD15G1128900' => 'mdo', 'Medtr0100s0140' => 'mtr', 'Medtr1g040785' => 'mtr', 'Medtr1g040815' => 'mtr', 'Medtr1g040845' => 'mtr', 'Medtr1g048300' => 'mtr', 'Medtr1g049240' => 'mtr', 'Medtr2g063010' => 'mtr', 'Medtr2g438190' => 'mtr', 'Medtr5g042350' => 'mtr', 'Medtr6g445140' => 'mtr', 'Medtr8g042530' => 'mtr', 'MELO3C003721.2' => 'cme', 'MELO3C033004.2' => 'cme', 'MSTRG.25250' => 'ama', 'Os02g0511600' => 'osa', 'Os11g0222800' => 'osa', 'Os11g0224200' => 'osa', 'Os11g0224301' => 'osa', 'PGR044G0606' => 'pgr', 'PGSC0003DMG400004421' => 'stu', 'Phvul.001G045800' => 'pvu', 'Phvul.002G171300' => 'pvu', 'Phvul.004G057100' => 'pvu', 'Phvul.006G043500' => 'pvu', 'Phvul.007G030200' => 'pvu', 'Phvul.007G030500' => 'pvu', 'Phvul.007G239600' => 'pvu', 'Phvul.008G024700' => 'pvu', 'Phvul.009G216600' => 'pvu', 'Phvul.009G216700' => 'pvu', 'Phvul.010G051700' => 'pvu', 'Potri.004G167900' => 'ptr', 'Potri.006G257600' => 'ptr', 'Potri.009G129400' => 'ptr', 'Prupe.1G484000' => 'ppe', 'Prupe.1G484100' => 'ppe', 'Prupe.1G484200' => 'ppe', 'Psat0s2453g0040' => 'psa', 'Psat0s2453g0080' => 'psa', 'Psat0s2453g0120' => 'psa', 'Psat0s2453g0200' => 'psa', 'Psat0s2453g0240' => 'psa', 'Psat0s3990g0120' => 'psa', 'Psat1g016120' => 'psa', 'Psat3g204760' => 'psa', 'Psat6g048880' => 'psa', 'PSO478G3089' => 'pso', 'PSO478G4527' => 'pso', 'PSO541G0501' => 'pso', 'PSO541G2996' => 'pso', 'PSO541G3291' => 'pso', 'PSO675G0727' => 'pso', 'PSO675G1843' => 'pso', 'PSO675G1869' => 'pso', 'QL02p021022' => 'qlo', 'QL07p000821' => 'qlo', 'QL07p000848' => 'qlo', 'QL07p000880' => 'qlo', 'QL12p013627' => 'qlo', 'QL12p013638' => 'qlo', 'RcHm_v2.0_Chr6g0286461' => 'rch', 'RcHm_v2.0_Chr6g0297451' => 'rch', 'RcHm_v2.0_Chr6g0297461' => 'rch', 'RcHm_v2.0_Chr6g0297491' => 'rch', 'Rhsim04G0089500' => 'rsi', 'Rhsim04G0091300' => 'rsi', 'Rhsim04G0092100' => 'rsi', 'Rhsim04G0092600' => 'rsi', 'Sabra06G0201500' => 'sbr', 'Sabra09G0098900' => 'sbr', 'SalBow6G4108' => 'sbo', 'Sc03g0006280' => 'sci', 'Sc03g0006290' => 'sci', 'Sc06g0000520' => 'sci', 'Sc23g0006630' => 'sci', 'Sed0003642' => 'sed', 'Sed0003760' => 'sed', 'Sed0010450' => 'sed', 'Sed0012505' => 'sed', 'Sed0018471' => 'sed', 'Sed0025130' => 'sed', 'SGA_v2.0_scaffold116G32303' => 'sas', 'SGA_v2.0_scaffold71G23793' => 'sas', 'SGA_v2.0_scaffold71G23794' => 'sas', 'Solyc10g054673.1' => 'sly', 'Solyc10g054677.1' => 'sly', 'Sopen10g024540' => 'spe', 'Sopen10g024580' => 'spe', 'Sp2g10630' => 'spa', 'Sp2g10650' => 'spa', 'Sp2g10660' => 'spa', 'Sp7g29890' => 'spa', 'Sp7g29900' => 'spa', 'SpUn0983_0010' => 'spa', 'SpUn0983_0020' => 'spa', 'TAR371G0865' => 'tar', 'TAR622G0422' => 'tar', 'TAR622G0534' => 'tar', 'TAR622G1058' => 'tar', 'TAR629G0897' => 'tar', 'TAR629G2934' => 'tar', 'THA.LOC104803439' => 'tha', 'THA.LOC104818604' => 'tha', 'THA.LOC104818605' => 'tha', 'THA.LOC104818607' => 'tha', 'THA.LOC104818610' => 'tha', 'THA.LOC104818611' => 'tha', 'Thecc.02G154500' => 'tca', 'Thecc.02G154600' => 'tca', 'Thecc.09G021200' => 'tca', 'Thhalv10001075m.g' => 'esa', 'Thhalv10001150m.g' => 'esa', 'Thhalv10009797m.g' => 'esa', 'Thhalv10026845m.g' => 'esa', 'Thhalv10027525m.g' => 'esa', 'Thhalv10027554m.g' => 'esa', 'TPR.G19813' => 'tpr', 'TPR.G19820' => 'tpr', 'TPR.G3270' => 'tpr', 'TPR.G35350' => 'tpr', 'TPR.G35354' => 'tpr', 'TPR.G35694' => 'tpr', 'TPR.G3595' => 'tpr', 'TPR.G3968' => 'tpr', 'TPR.G3970' => 'tpr', 'TPR.G8' => 'tpr', 'TPR.G9069' => 'tpr', 'TWI34G0730' => 'twi', 'TWI34G0812' => 'twi', 'TWI63G0410' => 'twi', 'TWI63G1514' => 'twi', 'VMungo0331G0458' => 'vmu', 'VMungo0331G0739' => 'vmu', 'VMungo0464G0399' => 'vmu', 'VMungo0464G1322' => 'vmu', 'VMungo0464G1777' => 'vmu', 'VMungo0540G2413' => 'vmu', 'VMungo0720G0118' => 'vmu', 'VMungo0720G1259' => 'vmu', 'VMungo0720G3158' => 'vmu', 'Zm00001eb085230' => 'zma', 'Zm00001eb170490' => 'zma', 'Zm00001eb170500' => 'zma', 'Zm00001eb307030' => 'zma', 'Zm00001eb421200' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001817' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001817' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001817' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001817' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '361', 'num_species' => '76' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p06190' => 'bna', 'A01p06200' => 'bna', 'A01p06210' => 'bna', 'A01p06720' => 'bna', 'A01p06730' => 'bna', 'A01p06740' => 'bna', 'A02p29300' => 'bna', 'A02p29320' => 'bna', 'A02p29330' => 'bna', 'A03p61240' => 'bna', 'A06p46400' => 'bna', 'Aa31LG2G17850' => 'aar', 'Aa31LG2G17870' => 'aar', 'Actinidia22324' => 'ach', 'AL7G19750' => 'aly', 'AL7G19780' => 'aly', 'AL7G19790' => 'aly', 'AL7G19800' => 'aly', 'AL7G19810' => 'aly', 'Aqoxy4G00786' => 'aox', 'Aqoxy5G03160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07A84U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27HQCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D36J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36N5BX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62PV47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW32B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W5KIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUNV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0VXY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1WXPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9XFHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFW6MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1V55D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3P3AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWA25E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUQM4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4PYL' => 'arhy', 'AT4G32090' => 'ath', 'AT4G32100' => 'ath', 'AT4G32105' => 'ath', 'AT4G32110' => 'ath', 'ATR0582G117' => 'atr', 'ATR0582G157' => 'atr', 'ATR0582G316' => 'atr', 'ATR0582G378' => 'atr', 'Atru.chr12.564' => 'acertr', 'Atru.chr6.250' => 'acertr', 'Atru.chr7.2470' => 'acertr', 'Atru.chr7.2473' => 'acertr', 'Atru.chr7.2474' => 'acertr', 'Atru.chr7.2476' => 'acertr', 'AUR62012432' => 'cqu', 'AUR62029426' => 'cqu', 'BcaB03g11963' => 'bca', 'BcaB07g30432' => 'bca', 'BcaB07g30433' => 'bca', 'BcaC03g16784' => 'bca', 'BcaC03g16785' => 'bca', 'BcaC06g31519' => 'bca', 'BcaC06g34407' => 'bca', 'BcaC09g51932' => 'bca', 'BcaC09g51998' => 'bca', 'BcaNung03137' => 'bca', 'BcaNung03138' => 'bca', 'BolC1t00680H' => 'bol', 'BolC1t00681H' => 'bol', 'BolC1t00731H' => 'bol', 'BolC2t10708H' => 'bol', 'BolC7t43441H' => 'bol', 'BolC7t46357H' => 'bol', 'BraA01t00587Z' => 'bra', 'BraA01t00588Z' => 'bra', 'BraA01t00629Z' => 'bra', 'BraA02t07960Z' => 'bra', 'BraA03t15168Z' => 'bra', 'BraA06t27504Z' => 'bra', 'C01p06830' => 'bna', 'C01p06840' => 'bna', 'C01p06850' => 'bna', 'C01p07480' => 'bna', 'C01p07490' => 'bna', 'C01p07500' => 'bna', 'C02p46550' => 'bna', 'C02p46580' => 'bna', 'C02p46590' => 'bna', 'C07p29020' => 'bna', 'C07p59090' => 'bna', 'CAN.G111.7' => 'can', 'CANSAT25G3871' => 'cansat', 'CARHR239990' => 'chi', 'CARHR240000' => 'chi', 'CARHR240010' => 'chi', 'CARHR240020' => 'chi', 'Carub.0007s0845' => 'cru', 'Carub.0007s0846' => 'cru', 'Carub.0007s0847' => 'cru', 'Ca_03322_v3' => 'car', 'CDE02G0050' => 'cde', 'CDE05G3187' => 'cde', 'CDE06G0004' => 'cde', 'Ciclev10009917m.g' => 'ccl', 'Ciclev10010457m.g' => 'ccl', 'CiPaw.08G009300' => 'cil', 'ClCG05G016680' => 'cla', 'ClCG05G016690' => 'cla', 'COL.COLO4_18892' => 'col', 'Cpa.g.sc187.6' => 'cpa', 'CsaV3_3G046170' => 'csa', 'CsaV3_3G046190' => 'csa', 'CsaV3_6G045660' => 'csa', 'DCAR_004364' => 'dca', 'DCAR_015990' => 'dca', 'Dinv24980' => 'din', 'Dinv26451' => 'din', 'Duzib052G0237' => 'dzi', 'Duzib150G1023' => 'dzi', 'Duzib168G0445' => 'dzi', 'ECA246G0220' => 'eca', 'EL10Ac2g04174' => 'bvu', 'EL10Ac6g15442' => 'bvu', 'Eucgr.C01626' => 'egr', 'Eucgr.C01709' => 'egr', 'Eucgr.C02739' => 'egr', 'Eucgr.L02576' => 'egr', 'FAN04G1340' => 'fan', 'FAN04G2963' => 'fan', 'FAN08G2754' => 'fan', 'FAN18G1420' => 'fan', 'FAN18G2855' => 'fan', 'FAN24G1383' => 'fan', 'FAN24G1684' => 'fan', 'FAN24G2268' => 'fan', 'FAN24G2789' => 'fan', 'FAN24G3294' => 'fan', 'FAN27G0609' => 'fan', 'FAN27G2147' => 'fan', 'FAN27G2153' => 'fan', 'FvH4_2g27480' => 'fve', 'FvH4_2g28680' => 'fve', 'FvH4_2g28690' => 'fve', 'FvH4_2g28701' => 'fve', 'FvH4_2g28710' => 'fve', 'FvH4_2g28712' => 'fve', 'FvH4_5g03660' => 'fve', 'FvH4_5g25410' => 'fve', 'Glyma.05G150900' => 'gma', 'Glyma.07G189600' => 'gma', 'Glyma.08G316300' => 'gma', 'Glyma.08G357100' => 'gma', 'Glyma.09G085400' => 'gma', 'Glyma.10G113700' => 'gma', 'Glyma.10G113900' => 'gma', 'Glyma.10G114100' => 'gma', 'Glyma.10G186200' => 'gma', 'Glyma.10G271300' => 'gma', 'Glyma.13G199700' => 'gma', 'Glyma.17G218100' => 'gma', 'Glyma.18G175601' => 'gma', 'Glyma.18G276100' => 'gma', 'Glyma.20G204300' => 'gma', 'Gohir.A07G029700' => 'ghi', 'Gohir.A13G061900' => 'ghi', 'Gohir.D07G033550' => 'ghi', 'Gohir.D13G060100' => 'ghi', 'Gorai.013G068000' => 'gra', 'HanXRQChr03g0079111' => 'han', 'HanXRQChr12g0373391' => 'han', 'HanXRQChr13g0400031' => 'han', 'HanXRQChr16g0511881' => 'han', 'Haze_21485' => 'cav', 'Haze_21486' => 'cav', 'HPP92_015931' => 'vpl', 'HPP92_021690' => 'vpl', 'HPP92_021691' => 'vpl', 'HPP92_021711' => 'vpl', 'HPP92_021712' => 'vpl', 'Lalb_Chr03g0036441' => 'lal', 'Lalb_Chr07g0186891' => 'lal', 'Lalb_Chr07g0186901' => 'lal', 'Lalb_Chr12g0205711' => 'lal', 'Lalb_Chr12g0205721' => 'lal', 'Lalb_Chr13g0294691' => 'lal', 'Lalb_Chr13g0294711' => 'lal', 'Lalb_Chr13g0294721' => 'lal', 'Lalb_Chr17g0336761' => 'lal', 'Lalb_Chr21g0316211' => 'lal', 'Lalb_Chr21g0316231' => 'lal', 'Lj3g0023162' => 'lja', 'Lj4g0004287' => 'lja', 'Lj4g0011737' => 'lja', 'Lj4g0014854' => 'lja', 'Lj4g0019656' => 'lja', 'Lj4g0020170' => 'lja', 'Lj4g0027202' => 'lja', 'Lj5g0009014' => 'lja', 'Lj6g0004190' => 'lja', 'Lj6g0012802' => 'lja', 'Lj6g0014356' => 'lja', 'Lj7E726T0' => 'lonja', 'Lsat_1_v5_gn_1_106201' => 'lsa', 'Lsat_1_v5_gn_6_115761' => 'lsa', 'Lsat_1_v5_gn_6_115781' => 'lsa', 'Lsat_1_v5_gn_6_115820' => 'lsa', 'Lsat_1_v5_gn_6_27980' => 'lsa', 'Lsat_1_v5_gn_6_28121' => 'lsa', 'Manes.02G218600' => 'mes', 'Manes.16G124600' => 'mes', 'MBI07_g01997_MAGBIO' => 'mbi', 'MBI07_g02003_MAGBIO' => 'mbi', 'MBI07_g02004_MAGBIO' => 'mbi', 'MBI18_g29804_MAGBIO' => 'mbi', 'MD08G1079500' => 'mdo', 'MD08G1151500' => 'mdo', 'MD15G1128800' => 'mdo', 'MD15G1128900' => 'mdo', 'Medtr0100s0140' => 'mtr', 'Medtr1g040785' => 'mtr', 'Medtr1g040815' => 'mtr', 'Medtr1g040845' => 'mtr', 'Medtr1g048300' => 'mtr', 'Medtr1g049240' => 'mtr', 'Medtr2g063010' => 'mtr', 'Medtr2g438190' => 'mtr', 'Medtr5g042350' => 'mtr', 'Medtr6g445140' => 'mtr', 'Medtr8g042530' => 'mtr', 'MELO3C003721.2' => 'cme', 'MELO3C033004.2' => 'cme', 'MSTRG.25250' => 'ama', 'Os02g0511600' => 'osa', 'Os11g0222800' => 'osa', 'Os11g0224200' => 'osa', 'Os11g0224301' => 'osa', 'PGR044G0606' => 'pgr', 'PGSC0003DMG400004421' => 'stu', 'Phvul.001G045800' => 'pvu', 'Phvul.002G171300' => 'pvu', 'Phvul.004G057100' => 'pvu', 'Phvul.006G043500' => 'pvu', 'Phvul.007G030200' => 'pvu', 'Phvul.007G030500' => 'pvu', 'Phvul.007G239600' => 'pvu', 'Phvul.008G024700' => 'pvu', 'Phvul.009G216600' => 'pvu', 'Phvul.009G216700' => 'pvu', 'Phvul.010G051700' => 'pvu', 'Potri.004G167900' => 'ptr', 'Potri.006G257600' => 'ptr', 'Potri.009G129400' => 'ptr', 'Prupe.1G484000' => 'ppe', 'Prupe.1G484100' => 'ppe', 'Prupe.1G484200' => 'ppe', 'Psat0s2453g0040' => 'psa', 'Psat0s2453g0080' => 'psa', 'Psat0s2453g0120' => 'psa', 'Psat0s2453g0200' => 'psa', 'Psat0s2453g0240' => 'psa', 'Psat0s3990g0120' => 'psa', 'Psat1g016120' => 'psa', 'Psat3g204760' => 'psa', 'Psat6g048880' => 'psa', 'PSO478G3089' => 'pso', 'PSO478G4527' => 'pso', 'PSO541G0501' => 'pso', 'PSO541G2996' => 'pso', 'PSO541G3291' => 'pso', 'PSO675G0727' => 'pso', 'PSO675G1843' => 'pso', 'PSO675G1869' => 'pso', 'QL02p021022' => 'qlo', 'QL07p000821' => 'qlo', 'QL07p000848' => 'qlo', 'QL07p000880' => 'qlo', 'QL12p013627' => 'qlo', 'QL12p013638' => 'qlo', 'RcHm_v2.0_Chr6g0286461' => 'rch', 'RcHm_v2.0_Chr6g0297451' => 'rch', 'RcHm_v2.0_Chr6g0297461' => 'rch', 'RcHm_v2.0_Chr6g0297491' => 'rch', 'Rhsim04G0089500' => 'rsi', 'Rhsim04G0091300' => 'rsi', 'Rhsim04G0092100' => 'rsi', 'Rhsim04G0092600' => 'rsi', 'Sabra06G0201500' => 'sbr', 'Sabra09G0098900' => 'sbr', 'SalBow6G4108' => 'sbo', 'Sc03g0006280' => 'sci', 'Sc03g0006290' => 'sci', 'Sc06g0000520' => 'sci', 'Sc23g0006630' => 'sci', 'Sed0003642' => 'sed', 'Sed0003760' => 'sed', 'Sed0010450' => 'sed', 'Sed0012505' => 'sed', 'Sed0018471' => 'sed', 'Sed0025130' => 'sed', 'SGA_v2.0_scaffold116G32303' => 'sas', 'SGA_v2.0_scaffold71G23793' => 'sas', 'SGA_v2.0_scaffold71G23794' => 'sas', 'Solyc10g054673.1' => 'sly', 'Solyc10g054677.1' => 'sly', 'Sopen10g024540' => 'spe', 'Sopen10g024580' => 'spe', 'Sp2g10630' => 'spa', 'Sp2g10650' => 'spa', 'Sp2g10660' => 'spa', 'Sp7g29890' => 'spa', 'Sp7g29900' => 'spa', 'SpUn0983_0010' => 'spa', 'SpUn0983_0020' => 'spa', 'TAR371G0865' => 'tar', 'TAR622G0422' => 'tar', 'TAR622G0534' => 'tar', 'TAR622G1058' => 'tar', 'TAR629G0897' => 'tar', 'TAR629G2934' => 'tar', 'THA.LOC104803439' => 'tha', 'THA.LOC104818604' => 'tha', 'THA.LOC104818605' => 'tha', 'THA.LOC104818607' => 'tha', 'THA.LOC104818610' => 'tha', 'THA.LOC104818611' => 'tha', 'Thecc.02G154500' => 'tca', 'Thecc.02G154600' => 'tca', 'Thecc.09G021200' => 'tca', 'Thhalv10001075m.g' => 'esa', 'Thhalv10001150m.g' => 'esa', 'Thhalv10009797m.g' => 'esa', 'Thhalv10026845m.g' => 'esa', 'Thhalv10027525m.g' => 'esa', 'Thhalv10027554m.g' => 'esa', 'TPR.G19813' => 'tpr', 'TPR.G19820' => 'tpr', 'TPR.G3270' => 'tpr', 'TPR.G35350' => 'tpr', 'TPR.G35354' => 'tpr', 'TPR.G35694' => 'tpr', 'TPR.G3595' => 'tpr', 'TPR.G3968' => 'tpr', 'TPR.G3970' => 'tpr', 'TPR.G8' => 'tpr', 'TPR.G9069' => 'tpr', 'TWI34G0730' => 'twi', 'TWI34G0812' => 'twi', 'TWI63G0410' => 'twi', 'TWI63G1514' => 'twi', 'VMungo0331G0458' => 'vmu', 'VMungo0331G0739' => 'vmu', 'VMungo0464G0399' => 'vmu', 'VMungo0464G1322' => 'vmu', 'VMungo0464G1777' => 'vmu', 'VMungo0540G2413' => 'vmu', 'VMungo0720G0118' => 'vmu', 'VMungo0720G1259' => 'vmu', 'VMungo0720G3158' => 'vmu', 'Zm00001eb085230' => 'zma', 'Zm00001eb170490' => 'zma', 'Zm00001eb170500' => 'zma', 'Zm00001eb307030' => 'zma', 'Zm00001eb421200' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001817', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001817' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '361', 'num_species' => '76' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001817' ) ), 'genes' => array( 'A01p06190' => 'bna', 'A01p06200' => 'bna', 'A01p06210' => 'bna', 'A01p06720' => 'bna', 'A01p06730' => 'bna', 'A01p06740' => 'bna', 'A02p29300' => 'bna', 'A02p29320' => 'bna', 'A02p29330' => 'bna', 'A03p61240' => 'bna', 'A06p46400' => 'bna', 'Aa31LG2G17850' => 'aar', 'Aa31LG2G17870' => 'aar', 'Actinidia22324' => 'ach', 'AL7G19750' => 'aly', 'AL7G19780' => 'aly', 'AL7G19790' => 'aly', 'AL7G19800' => 'aly', 'AL7G19810' => 'aly', 'Aqoxy4G00786' => 'aox', 'Aqoxy5G03160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07A84U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27HQCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D36J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36N5BX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62PV47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW32B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W5KIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUNV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0VXY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1WXPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9XFHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFW6MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1V55D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3P3AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWA25E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUQM4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4PYL' => 'arhy', 'AT4G32090' => 'ath', 'AT4G32100' => 'ath', 'AT4G32105' => 'ath', 'AT4G32110' => 'ath', 'ATR0582G117' => 'atr', 'ATR0582G157' => 'atr', 'ATR0582G316' => 'atr', 'ATR0582G378' => 'atr', 'Atru.chr12.564' => 'acertr', 'Atru.chr6.250' => 'acertr', 'Atru.chr7.2470' => 'acertr', 'Atru.chr7.2473' => 'acertr', 'Atru.chr7.2474' => 'acertr', 'Atru.chr7.2476' => 'acertr', 'AUR62012432' => 'cqu', 'AUR62029426' => 'cqu', 'BcaB03g11963' => 'bca', 'BcaB07g30432' => 'bca', 'BcaB07g30433' => 'bca', 'BcaC03g16784' => 'bca', 'BcaC03g16785' => 'bca', 'BcaC06g31519' => 'bca', 'BcaC06g34407' => 'bca', 'BcaC09g51932' => 'bca', 'BcaC09g51998' => 'bca', 'BcaNung03137' => 'bca', 'BcaNung03138' => 'bca', 'BolC1t00680H' => 'bol', 'BolC1t00681H' => 'bol', 'BolC1t00731H' => 'bol', 'BolC2t10708H' => 'bol', 'BolC7t43441H' => 'bol', 'BolC7t46357H' => 'bol', 'BraA01t00587Z' => 'bra', 'BraA01t00588Z' => 'bra', 'BraA01t00629Z' => 'bra', 'BraA02t07960Z' => 'bra', 'BraA03t15168Z' => 'bra', 'BraA06t27504Z' => 'bra', 'C01p06830' => 'bna', 'C01p06840' => 'bna', 'C01p06850' => 'bna', 'C01p07480' => 'bna', 'C01p07490' => 'bna', 'C01p07500' => 'bna', 'C02p46550' => 'bna', 'C02p46580' => 'bna', 'C02p46590' => 'bna', 'C07p29020' => 'bna', 'C07p59090' => 'bna', 'CAN.G111.7' => 'can', 'CANSAT25G3871' => 'cansat', 'CARHR239990' => 'chi', 'CARHR240000' => 'chi', 'CARHR240010' => 'chi', 'CARHR240020' => 'chi', 'Carub.0007s0845' => 'cru', 'Carub.0007s0846' => 'cru', 'Carub.0007s0847' => 'cru', 'Ca_03322_v3' => 'car', 'CDE02G0050' => 'cde', 'CDE05G3187' => 'cde', 'CDE06G0004' => 'cde', 'Ciclev10009917m.g' => 'ccl', 'Ciclev10010457m.g' => 'ccl', 'CiPaw.08G009300' => 'cil', 'ClCG05G016680' => 'cla', 'ClCG05G016690' => 'cla', 'COL.COLO4_18892' => 'col', 'Cpa.g.sc187.6' => 'cpa', 'CsaV3_3G046170' => 'csa', 'CsaV3_3G046190' => 'csa', 'CsaV3_6G045660' => 'csa', 'DCAR_004364' => 'dca', 'DCAR_015990' => 'dca', 'Dinv24980' => 'din', 'Dinv26451' => 'din', 'Duzib052G0237' => 'dzi', 'Duzib150G1023' => 'dzi', 'Duzib168G0445' => 'dzi', 'ECA246G0220' => 'eca', 'EL10Ac2g04174' => 'bvu', 'EL10Ac6g15442' => 'bvu', 'Eucgr.C01626' => 'egr', 'Eucgr.C01709' => 'egr', 'Eucgr.C02739' => 'egr', 'Eucgr.L02576' => 'egr', 'FAN04G1340' => 'fan', 'FAN04G2963' => 'fan', 'FAN08G2754' => 'fan', 'FAN18G1420' => 'fan', 'FAN18G2855' => 'fan', 'FAN24G1383' => 'fan', 'FAN24G1684' => 'fan', 'FAN24G2268' => 'fan', 'FAN24G2789' => 'fan', 'FAN24G3294' => 'fan', 'FAN27G0609' => 'fan', 'FAN27G2147' => 'fan', 'FAN27G2153' => 'fan', 'FvH4_2g27480' => 'fve', 'FvH4_2g28680' => 'fve', 'FvH4_2g28690' => 'fve', 'FvH4_2g28701' => 'fve', 'FvH4_2g28710' => 'fve', 'FvH4_2g28712' => 'fve', 'FvH4_5g03660' => 'fve', 'FvH4_5g25410' => 'fve', 'Glyma.05G150900' => 'gma', 'Glyma.07G189600' => 'gma', 'Glyma.08G316300' => 'gma', 'Glyma.08G357100' => 'gma', 'Glyma.09G085400' => 'gma', 'Glyma.10G113700' => 'gma', 'Glyma.10G113900' => 'gma', 'Glyma.10G114100' => 'gma', 'Glyma.10G186200' => 'gma', 'Glyma.10G271300' => 'gma', 'Glyma.13G199700' => 'gma', 'Glyma.17G218100' => 'gma', 'Glyma.18G175601' => 'gma', 'Glyma.18G276100' => 'gma', 'Glyma.20G204300' => 'gma', 'Gohir.A07G029700' => 'ghi', 'Gohir.A13G061900' => 'ghi', 'Gohir.D07G033550' => 'ghi', 'Gohir.D13G060100' => 'ghi', 'Gorai.013G068000' => 'gra', 'HanXRQChr03g0079111' => 'han', 'HanXRQChr12g0373391' => 'han', 'HanXRQChr13g0400031' => 'han', 'HanXRQChr16g0511881' => 'han', 'Haze_21485' => 'cav', 'Haze_21486' => 'cav', 'HPP92_015931' => 'vpl', 'HPP92_021690' => 'vpl', 'HPP92_021691' => 'vpl', 'HPP92_021711' => 'vpl', 'HPP92_021712' => 'vpl', 'Lalb_Chr03g0036441' => 'lal', 'Lalb_Chr07g0186891' => 'lal', 'Lalb_Chr07g0186901' => 'lal', 'Lalb_Chr12g0205711' => 'lal', 'Lalb_Chr12g0205721' => 'lal', 'Lalb_Chr13g0294691' => 'lal', 'Lalb_Chr13g0294711' => 'lal', 'Lalb_Chr13g0294721' => 'lal', 'Lalb_Chr17g0336761' => 'lal', 'Lalb_Chr21g0316211' => 'lal', 'Lalb_Chr21g0316231' => 'lal', 'Lj3g0023162' => 'lja', 'Lj4g0004287' => 'lja', 'Lj4g0011737' => 'lja', 'Lj4g0014854' => 'lja', 'Lj4g0019656' => 'lja', 'Lj4g0020170' => 'lja', 'Lj4g0027202' => 'lja', 'Lj5g0009014' => 'lja', 'Lj6g0004190' => 'lja', 'Lj6g0012802' => 'lja', 'Lj6g0014356' => 'lja', 'Lj7E726T0' => 'lonja', 'Lsat_1_v5_gn_1_106201' => 'lsa', 'Lsat_1_v5_gn_6_115761' => 'lsa', 'Lsat_1_v5_gn_6_115781' => 'lsa', 'Lsat_1_v5_gn_6_115820' => 'lsa', 'Lsat_1_v5_gn_6_27980' => 'lsa', 'Lsat_1_v5_gn_6_28121' => 'lsa', 'Manes.02G218600' => 'mes', 'Manes.16G124600' => 'mes', 'MBI07_g01997_MAGBIO' => 'mbi', 'MBI07_g02003_MAGBIO' => 'mbi', 'MBI07_g02004_MAGBIO' => 'mbi', 'MBI18_g29804_MAGBIO' => 'mbi', 'MD08G1079500' => 'mdo', 'MD08G1151500' => 'mdo', 'MD15G1128800' => 'mdo', 'MD15G1128900' => 'mdo', 'Medtr0100s0140' => 'mtr', 'Medtr1g040785' => 'mtr', 'Medtr1g040815' => 'mtr', 'Medtr1g040845' => 'mtr', 'Medtr1g048300' => 'mtr', 'Medtr1g049240' => 'mtr', 'Medtr2g063010' => 'mtr', 'Medtr2g438190' => 'mtr', 'Medtr5g042350' => 'mtr', 'Medtr6g445140' => 'mtr', 'Medtr8g042530' => 'mtr', 'MELO3C003721.2' => 'cme', 'MELO3C033004.2' => 'cme', 'MSTRG.25250' => 'ama', 'Os02g0511600' => 'osa', 'Os11g0222800' => 'osa', 'Os11g0224200' => 'osa', 'Os11g0224301' => 'osa', 'PGR044G0606' => 'pgr', 'PGSC0003DMG400004421' => 'stu', 'Phvul.001G045800' => 'pvu', 'Phvul.002G171300' => 'pvu', 'Phvul.004G057100' => 'pvu', 'Phvul.006G043500' => 'pvu', 'Phvul.007G030200' => 'pvu', 'Phvul.007G030500' => 'pvu', 'Phvul.007G239600' => 'pvu', 'Phvul.008G024700' => 'pvu', 'Phvul.009G216600' => 'pvu', 'Phvul.009G216700' => 'pvu', 'Phvul.010G051700' => 'pvu', 'Potri.004G167900' => 'ptr', 'Potri.006G257600' => 'ptr', 'Potri.009G129400' => 'ptr', 'Prupe.1G484000' => 'ppe', 'Prupe.1G484100' => 'ppe', 'Prupe.1G484200' => 'ppe', 'Psat0s2453g0040' => 'psa', 'Psat0s2453g0080' => 'psa', 'Psat0s2453g0120' => 'psa', 'Psat0s2453g0200' => 'psa', 'Psat0s2453g0240' => 'psa', 'Psat0s3990g0120' => 'psa', 'Psat1g016120' => 'psa', 'Psat3g204760' => 'psa', 'Psat6g048880' => 'psa', 'PSO478G3089' => 'pso', 'PSO478G4527' => 'pso', 'PSO541G0501' => 'pso', 'PSO541G2996' => 'pso', 'PSO541G3291' => 'pso', 'PSO675G0727' => 'pso', 'PSO675G1843' => 'pso', 'PSO675G1869' => 'pso', 'QL02p021022' => 'qlo', 'QL07p000821' => 'qlo', 'QL07p000848' => 'qlo', 'QL07p000880' => 'qlo', 'QL12p013627' => 'qlo', 'QL12p013638' => 'qlo', 'RcHm_v2.0_Chr6g0286461' => 'rch', 'RcHm_v2.0_Chr6g0297451' => 'rch', 'RcHm_v2.0_Chr6g0297461' => 'rch', 'RcHm_v2.0_Chr6g0297491' => 'rch', 'Rhsim04G0089500' => 'rsi', 'Rhsim04G0091300' => 'rsi', 'Rhsim04G0092100' => 'rsi', 'Rhsim04G0092600' => 'rsi', 'Sabra06G0201500' => 'sbr', 'Sabra09G0098900' => 'sbr', 'SalBow6G4108' => 'sbo', 'Sc03g0006280' => 'sci', 'Sc03g0006290' => 'sci', 'Sc06g0000520' => 'sci', 'Sc23g0006630' => 'sci', 'Sed0003642' => 'sed', 'Sed0003760' => 'sed', 'Sed0010450' => 'sed', 'Sed0012505' => 'sed', 'Sed0018471' => 'sed', 'Sed0025130' => 'sed', 'SGA_v2.0_scaffold116G32303' => 'sas', 'SGA_v2.0_scaffold71G23793' => 'sas', 'SGA_v2.0_scaffold71G23794' => 'sas', 'Solyc10g054673.1' => 'sly', 'Solyc10g054677.1' => 'sly', 'Sopen10g024540' => 'spe', 'Sopen10g024580' => 'spe', 'Sp2g10630' => 'spa', 'Sp2g10650' => 'spa', 'Sp2g10660' => 'spa', 'Sp7g29890' => 'spa', 'Sp7g29900' => 'spa', 'SpUn0983_0010' => 'spa', 'SpUn0983_0020' => 'spa', 'TAR371G0865' => 'tar', 'TAR622G0422' => 'tar', 'TAR622G0534' => 'tar', 'TAR622G1058' => 'tar', 'TAR629G0897' => 'tar', 'TAR629G2934' => 'tar', 'THA.LOC104803439' => 'tha', 'THA.LOC104818604' => 'tha', 'THA.LOC104818605' => 'tha', 'THA.LOC104818607' => 'tha', 'THA.LOC104818610' => 'tha', 'THA.LOC104818611' => 'tha', 'Thecc.02G154500' => 'tca', 'Thecc.02G154600' => 'tca', 'Thecc.09G021200' => 'tca', 'Thhalv10001075m.g' => 'esa', 'Thhalv10001150m.g' => 'esa', 'Thhalv10009797m.g' => 'esa', 'Thhalv10026845m.g' => 'esa', 'Thhalv10027525m.g' => 'esa', 'Thhalv10027554m.g' => 'esa', 'TPR.G19813' => 'tpr', 'TPR.G19820' => 'tpr', 'TPR.G3270' => 'tpr', 'TPR.G35350' => 'tpr', 'TPR.G35354' => 'tpr', 'TPR.G35694' => 'tpr', 'TPR.G3595' => 'tpr', 'TPR.G3968' => 'tpr', 'TPR.G3970' => 'tpr', 'TPR.G8' => 'tpr', 'TPR.G9069' => 'tpr', 'TWI34G0730' => 'twi', 'TWI34G0812' => 'twi', 'TWI63G0410' => 'twi', 'TWI63G1514' => 'twi', 'VMungo0331G0458' => 'vmu', 'VMungo0331G0739' => 'vmu', 'VMungo0464G0399' => 'vmu', 'VMungo0464G1322' => 'vmu', 'VMungo0464G1777' => 'vmu', 'VMungo0540G2413' => 'vmu', 'VMungo0720G0118' => 'vmu', 'VMungo0720G1259' => 'vmu', 'VMungo0720G3158' => 'vmu', 'Zm00001eb085230' => 'zma', 'Zm00001eb170490' => 'zma', 'Zm00001eb170500' => 'zma', 'Zm00001eb307030' => 'zma', 'Zm00001eb421200' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001817' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001817' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001817' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001817' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '361', 'num_species' => '76' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p06190' => 'bna', 'A01p06200' => 'bna', 'A01p06210' => 'bna', 'A01p06720' => 'bna', 'A01p06730' => 'bna', 'A01p06740' => 'bna', 'A02p29300' => 'bna', 'A02p29320' => 'bna', 'A02p29330' => 'bna', 'A03p61240' => 'bna', 'A06p46400' => 'bna', 'Aa31LG2G17850' => 'aar', 'Aa31LG2G17870' => 'aar', 'Actinidia22324' => 'ach', 'AL7G19750' => 'aly', 'AL7G19780' => 'aly', 'AL7G19790' => 'aly', 'AL7G19800' => 'aly', 'AL7G19810' => 'aly', 'Aqoxy4G00786' => 'aox', 'Aqoxy5G03160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07A84U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27HQCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D36J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36N5BX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62PV47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW32B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W5KIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUNV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0VXY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1WXPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9XFHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFW6MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1V55D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3P3AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWA25E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUQM4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4PYL' => 'arhy', 'AT4G32090' => 'ath', 'AT4G32100' => 'ath', 'AT4G32105' => 'ath', 'AT4G32110' => 'ath', 'ATR0582G117' => 'atr', 'ATR0582G157' => 'atr', 'ATR0582G316' => 'atr', 'ATR0582G378' => 'atr', 'Atru.chr12.564' => 'acertr', 'Atru.chr6.250' => 'acertr', 'Atru.chr7.2470' => 'acertr', 'Atru.chr7.2473' => 'acertr', 'Atru.chr7.2474' => 'acertr', 'Atru.chr7.2476' => 'acertr', 'AUR62012432' => 'cqu', 'AUR62029426' => 'cqu', 'BcaB03g11963' => 'bca', 'BcaB07g30432' => 'bca', 'BcaB07g30433' => 'bca', 'BcaC03g16784' => 'bca', 'BcaC03g16785' => 'bca', 'BcaC06g31519' => 'bca', 'BcaC06g34407' => 'bca', 'BcaC09g51932' => 'bca', 'BcaC09g51998' => 'bca', 'BcaNung03137' => 'bca', 'BcaNung03138' => 'bca', 'BolC1t00680H' => 'bol', 'BolC1t00681H' => 'bol', 'BolC1t00731H' => 'bol', 'BolC2t10708H' => 'bol', 'BolC7t43441H' => 'bol', 'BolC7t46357H' => 'bol', 'BraA01t00587Z' => 'bra', 'BraA01t00588Z' => 'bra', 'BraA01t00629Z' => 'bra', 'BraA02t07960Z' => 'bra', 'BraA03t15168Z' => 'bra', 'BraA06t27504Z' => 'bra', 'C01p06830' => 'bna', 'C01p06840' => 'bna', 'C01p06850' => 'bna', 'C01p07480' => 'bna', 'C01p07490' => 'bna', 'C01p07500' => 'bna', 'C02p46550' => 'bna', 'C02p46580' => 'bna', 'C02p46590' => 'bna', 'C07p29020' => 'bna', 'C07p59090' => 'bna', 'CAN.G111.7' => 'can', 'CANSAT25G3871' => 'cansat', 'CARHR239990' => 'chi', 'CARHR240000' => 'chi', 'CARHR240010' => 'chi', 'CARHR240020' => 'chi', 'Carub.0007s0845' => 'cru', 'Carub.0007s0846' => 'cru', 'Carub.0007s0847' => 'cru', 'Ca_03322_v3' => 'car', 'CDE02G0050' => 'cde', 'CDE05G3187' => 'cde', 'CDE06G0004' => 'cde', 'Ciclev10009917m.g' => 'ccl', 'Ciclev10010457m.g' => 'ccl', 'CiPaw.08G009300' => 'cil', 'ClCG05G016680' => 'cla', 'ClCG05G016690' => 'cla', 'COL.COLO4_18892' => 'col', 'Cpa.g.sc187.6' => 'cpa', 'CsaV3_3G046170' => 'csa', 'CsaV3_3G046190' => 'csa', 'CsaV3_6G045660' => 'csa', 'DCAR_004364' => 'dca', 'DCAR_015990' => 'dca', 'Dinv24980' => 'din', 'Dinv26451' => 'din', 'Duzib052G0237' => 'dzi', 'Duzib150G1023' => 'dzi', 'Duzib168G0445' => 'dzi', 'ECA246G0220' => 'eca', 'EL10Ac2g04174' => 'bvu', 'EL10Ac6g15442' => 'bvu', 'Eucgr.C01626' => 'egr', 'Eucgr.C01709' => 'egr', 'Eucgr.C02739' => 'egr', 'Eucgr.L02576' => 'egr', 'FAN04G1340' => 'fan', 'FAN04G2963' => 'fan', 'FAN08G2754' => 'fan', 'FAN18G1420' => 'fan', 'FAN18G2855' => 'fan', 'FAN24G1383' => 'fan', 'FAN24G1684' => 'fan', 'FAN24G2268' => 'fan', 'FAN24G2789' => 'fan', 'FAN24G3294' => 'fan', 'FAN27G0609' => 'fan', 'FAN27G2147' => 'fan', 'FAN27G2153' => 'fan', 'FvH4_2g27480' => 'fve', 'FvH4_2g28680' => 'fve', 'FvH4_2g28690' => 'fve', 'FvH4_2g28701' => 'fve', 'FvH4_2g28710' => 'fve', 'FvH4_2g28712' => 'fve', 'FvH4_5g03660' => 'fve', 'FvH4_5g25410' => 'fve', 'Glyma.05G150900' => 'gma', 'Glyma.07G189600' => 'gma', 'Glyma.08G316300' => 'gma', 'Glyma.08G357100' => 'gma', 'Glyma.09G085400' => 'gma', 'Glyma.10G113700' => 'gma', 'Glyma.10G113900' => 'gma', 'Glyma.10G114100' => 'gma', 'Glyma.10G186200' => 'gma', 'Glyma.10G271300' => 'gma', 'Glyma.13G199700' => 'gma', 'Glyma.17G218100' => 'gma', 'Glyma.18G175601' => 'gma', 'Glyma.18G276100' => 'gma', 'Glyma.20G204300' => 'gma', 'Gohir.A07G029700' => 'ghi', 'Gohir.A13G061900' => 'ghi', 'Gohir.D07G033550' => 'ghi', 'Gohir.D13G060100' => 'ghi', 'Gorai.013G068000' => 'gra', 'HanXRQChr03g0079111' => 'han', 'HanXRQChr12g0373391' => 'han', 'HanXRQChr13g0400031' => 'han', 'HanXRQChr16g0511881' => 'han', 'Haze_21485' => 'cav', 'Haze_21486' => 'cav', 'HPP92_015931' => 'vpl', 'HPP92_021690' => 'vpl', 'HPP92_021691' => 'vpl', 'HPP92_021711' => 'vpl', 'HPP92_021712' => 'vpl', 'Lalb_Chr03g0036441' => 'lal', 'Lalb_Chr07g0186891' => 'lal', 'Lalb_Chr07g0186901' => 'lal', 'Lalb_Chr12g0205711' => 'lal', 'Lalb_Chr12g0205721' => 'lal', 'Lalb_Chr13g0294691' => 'lal', 'Lalb_Chr13g0294711' => 'lal', 'Lalb_Chr13g0294721' => 'lal', 'Lalb_Chr17g0336761' => 'lal', 'Lalb_Chr21g0316211' => 'lal', 'Lalb_Chr21g0316231' => 'lal', 'Lj3g0023162' => 'lja', 'Lj4g0004287' => 'lja', 'Lj4g0011737' => 'lja', 'Lj4g0014854' => 'lja', 'Lj4g0019656' => 'lja', 'Lj4g0020170' => 'lja', 'Lj4g0027202' => 'lja', 'Lj5g0009014' => 'lja', 'Lj6g0004190' => 'lja', 'Lj6g0012802' => 'lja', 'Lj6g0014356' => 'lja', 'Lj7E726T0' => 'lonja', 'Lsat_1_v5_gn_1_106201' => 'lsa', 'Lsat_1_v5_gn_6_115761' => 'lsa', 'Lsat_1_v5_gn_6_115781' => 'lsa', 'Lsat_1_v5_gn_6_115820' => 'lsa', 'Lsat_1_v5_gn_6_27980' => 'lsa', 'Lsat_1_v5_gn_6_28121' => 'lsa', 'Manes.02G218600' => 'mes', 'Manes.16G124600' => 'mes', 'MBI07_g01997_MAGBIO' => 'mbi', 'MBI07_g02003_MAGBIO' => 'mbi', 'MBI07_g02004_MAGBIO' => 'mbi', 'MBI18_g29804_MAGBIO' => 'mbi', 'MD08G1079500' => 'mdo', 'MD08G1151500' => 'mdo', 'MD15G1128800' => 'mdo', 'MD15G1128900' => 'mdo', 'Medtr0100s0140' => 'mtr', 'Medtr1g040785' => 'mtr', 'Medtr1g040815' => 'mtr', 'Medtr1g040845' => 'mtr', 'Medtr1g048300' => 'mtr', 'Medtr1g049240' => 'mtr', 'Medtr2g063010' => 'mtr', 'Medtr2g438190' => 'mtr', 'Medtr5g042350' => 'mtr', 'Medtr6g445140' => 'mtr', 'Medtr8g042530' => 'mtr', 'MELO3C003721.2' => 'cme', 'MELO3C033004.2' => 'cme', 'MSTRG.25250' => 'ama', 'Os02g0511600' => 'osa', 'Os11g0222800' => 'osa', 'Os11g0224200' => 'osa', 'Os11g0224301' => 'osa', 'PGR044G0606' => 'pgr', 'PGSC0003DMG400004421' => 'stu', 'Phvul.001G045800' => 'pvu', 'Phvul.002G171300' => 'pvu', 'Phvul.004G057100' => 'pvu', 'Phvul.006G043500' => 'pvu', 'Phvul.007G030200' => 'pvu', 'Phvul.007G030500' => 'pvu', 'Phvul.007G239600' => 'pvu', 'Phvul.008G024700' => 'pvu', 'Phvul.009G216600' => 'pvu', 'Phvul.009G216700' => 'pvu', 'Phvul.010G051700' => 'pvu', 'Potri.004G167900' => 'ptr', 'Potri.006G257600' => 'ptr', 'Potri.009G129400' => 'ptr', 'Prupe.1G484000' => 'ppe', 'Prupe.1G484100' => 'ppe', 'Prupe.1G484200' => 'ppe', 'Psat0s2453g0040' => 'psa', 'Psat0s2453g0080' => 'psa', 'Psat0s2453g0120' => 'psa', 'Psat0s2453g0200' => 'psa', 'Psat0s2453g0240' => 'psa', 'Psat0s3990g0120' => 'psa', 'Psat1g016120' => 'psa', 'Psat3g204760' => 'psa', 'Psat6g048880' => 'psa', 'PSO478G3089' => 'pso', 'PSO478G4527' => 'pso', 'PSO541G0501' => 'pso', 'PSO541G2996' => 'pso', 'PSO541G3291' => 'pso', 'PSO675G0727' => 'pso', 'PSO675G1843' => 'pso', 'PSO675G1869' => 'pso', 'QL02p021022' => 'qlo', 'QL07p000821' => 'qlo', 'QL07p000848' => 'qlo', 'QL07p000880' => 'qlo', 'QL12p013627' => 'qlo', 'QL12p013638' => 'qlo', 'RcHm_v2.0_Chr6g0286461' => 'rch', 'RcHm_v2.0_Chr6g0297451' => 'rch', 'RcHm_v2.0_Chr6g0297461' => 'rch', 'RcHm_v2.0_Chr6g0297491' => 'rch', 'Rhsim04G0089500' => 'rsi', 'Rhsim04G0091300' => 'rsi', 'Rhsim04G0092100' => 'rsi', 'Rhsim04G0092600' => 'rsi', 'Sabra06G0201500' => 'sbr', 'Sabra09G0098900' => 'sbr', 'SalBow6G4108' => 'sbo', 'Sc03g0006280' => 'sci', 'Sc03g0006290' => 'sci', 'Sc06g0000520' => 'sci', 'Sc23g0006630' => 'sci', 'Sed0003642' => 'sed', 'Sed0003760' => 'sed', 'Sed0010450' => 'sed', 'Sed0012505' => 'sed', 'Sed0018471' => 'sed', 'Sed0025130' => 'sed', 'SGA_v2.0_scaffold116G32303' => 'sas', 'SGA_v2.0_scaffold71G23793' => 'sas', 'SGA_v2.0_scaffold71G23794' => 'sas', 'Solyc10g054673.1' => 'sly', 'Solyc10g054677.1' => 'sly', 'Sopen10g024540' => 'spe', 'Sopen10g024580' => 'spe', 'Sp2g10630' => 'spa', 'Sp2g10650' => 'spa', 'Sp2g10660' => 'spa', 'Sp7g29890' => 'spa', 'Sp7g29900' => 'spa', 'SpUn0983_0010' => 'spa', 'SpUn0983_0020' => 'spa', 'TAR371G0865' => 'tar', 'TAR622G0422' => 'tar', 'TAR622G0534' => 'tar', 'TAR622G1058' => 'tar', 'TAR629G0897' => 'tar', 'TAR629G2934' => 'tar', 'THA.LOC104803439' => 'tha', 'THA.LOC104818604' => 'tha', 'THA.LOC104818605' => 'tha', 'THA.LOC104818607' => 'tha', 'THA.LOC104818610' => 'tha', 'THA.LOC104818611' => 'tha', 'Thecc.02G154500' => 'tca', 'Thecc.02G154600' => 'tca', 'Thecc.09G021200' => 'tca', 'Thhalv10001075m.g' => 'esa', 'Thhalv10001150m.g' => 'esa', 'Thhalv10009797m.g' => 'esa', 'Thhalv10026845m.g' => 'esa', 'Thhalv10027525m.g' => 'esa', 'Thhalv10027554m.g' => 'esa', 'TPR.G19813' => 'tpr', 'TPR.G19820' => 'tpr', 'TPR.G3270' => 'tpr', 'TPR.G35350' => 'tpr', 'TPR.G35354' => 'tpr', 'TPR.G35694' => 'tpr', 'TPR.G3595' => 'tpr', 'TPR.G3968' => 'tpr', 'TPR.G3970' => 'tpr', 'TPR.G8' => 'tpr', 'TPR.G9069' => 'tpr', 'TWI34G0730' => 'twi', 'TWI34G0812' => 'twi', 'TWI63G0410' => 'twi', 'TWI63G1514' => 'twi', 'VMungo0331G0458' => 'vmu', 'VMungo0331G0739' => 'vmu', 'VMungo0464G0399' => 'vmu', 'VMungo0464G1322' => 'vmu', 'VMungo0464G1777' => 'vmu', 'VMungo0540G2413' => 'vmu', 'VMungo0720G0118' => 'vmu', 'VMungo0720G1259' => 'vmu', 'VMungo0720G3158' => 'vmu', 'Zm00001eb085230' => 'zma', 'Zm00001eb170490' => 'zma', 'Zm00001eb170500' => 'zma', 'Zm00001eb307030' => 'zma', 'Zm00001eb421200' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001817', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001817' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '361', 'num_species' => '76' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001817' ) ), 'genes' => array( 'A01p06190' => 'bna', 'A01p06200' => 'bna', 'A01p06210' => 'bna', 'A01p06720' => 'bna', 'A01p06730' => 'bna', 'A01p06740' => 'bna', 'A02p29300' => 'bna', 'A02p29320' => 'bna', 'A02p29330' => 'bna', 'A03p61240' => 'bna', 'A06p46400' => 'bna', 'Aa31LG2G17850' => 'aar', 'Aa31LG2G17870' => 'aar', 'Actinidia22324' => 'ach', 'AL7G19750' => 'aly', 'AL7G19780' => 'aly', 'AL7G19790' => 'aly', 'AL7G19800' => 'aly', 'AL7G19810' => 'aly', 'Aqoxy4G00786' => 'aox', 'Aqoxy5G03160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07A84U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27HQCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D36J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36N5BX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62PV47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW32B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W5KIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUNV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0VXY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1WXPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9XFHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFW6MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1V55D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3P3AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWA25E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUQM4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4PYL' => 'arhy', 'AT4G32090' => 'ath', 'AT4G32100' => 'ath', 'AT4G32105' => 'ath', 'AT4G32110' => 'ath', 'ATR0582G117' => 'atr', 'ATR0582G157' => 'atr', 'ATR0582G316' => 'atr', 'ATR0582G378' => 'atr', 'Atru.chr12.564' => 'acertr', 'Atru.chr6.250' => 'acertr', 'Atru.chr7.2470' => 'acertr', 'Atru.chr7.2473' => 'acertr', 'Atru.chr7.2474' => 'acertr', 'Atru.chr7.2476' => 'acertr', 'AUR62012432' => 'cqu', 'AUR62029426' => 'cqu', 'BcaB03g11963' => 'bca', 'BcaB07g30432' => 'bca', 'BcaB07g30433' => 'bca', 'BcaC03g16784' => 'bca', 'BcaC03g16785' => 'bca', 'BcaC06g31519' => 'bca', 'BcaC06g34407' => 'bca', 'BcaC09g51932' => 'bca', 'BcaC09g51998' => 'bca', 'BcaNung03137' => 'bca', 'BcaNung03138' => 'bca', 'BolC1t00680H' => 'bol', 'BolC1t00681H' => 'bol', 'BolC1t00731H' => 'bol', 'BolC2t10708H' => 'bol', 'BolC7t43441H' => 'bol', 'BolC7t46357H' => 'bol', 'BraA01t00587Z' => 'bra', 'BraA01t00588Z' => 'bra', 'BraA01t00629Z' => 'bra', 'BraA02t07960Z' => 'bra', 'BraA03t15168Z' => 'bra', 'BraA06t27504Z' => 'bra', 'C01p06830' => 'bna', 'C01p06840' => 'bna', 'C01p06850' => 'bna', 'C01p07480' => 'bna', 'C01p07490' => 'bna', 'C01p07500' => 'bna', 'C02p46550' => 'bna', 'C02p46580' => 'bna', 'C02p46590' => 'bna', 'C07p29020' => 'bna', 'C07p59090' => 'bna', 'CAN.G111.7' => 'can', 'CANSAT25G3871' => 'cansat', 'CARHR239990' => 'chi', 'CARHR240000' => 'chi', 'CARHR240010' => 'chi', 'CARHR240020' => 'chi', 'Carub.0007s0845' => 'cru', 'Carub.0007s0846' => 'cru', 'Carub.0007s0847' => 'cru', 'Ca_03322_v3' => 'car', 'CDE02G0050' => 'cde', 'CDE05G3187' => 'cde', 'CDE06G0004' => 'cde', 'Ciclev10009917m.g' => 'ccl', 'Ciclev10010457m.g' => 'ccl', 'CiPaw.08G009300' => 'cil', 'ClCG05G016680' => 'cla', 'ClCG05G016690' => 'cla', 'COL.COLO4_18892' => 'col', 'Cpa.g.sc187.6' => 'cpa', 'CsaV3_3G046170' => 'csa', 'CsaV3_3G046190' => 'csa', 'CsaV3_6G045660' => 'csa', 'DCAR_004364' => 'dca', 'DCAR_015990' => 'dca', 'Dinv24980' => 'din', 'Dinv26451' => 'din', 'Duzib052G0237' => 'dzi', 'Duzib150G1023' => 'dzi', 'Duzib168G0445' => 'dzi', 'ECA246G0220' => 'eca', 'EL10Ac2g04174' => 'bvu', 'EL10Ac6g15442' => 'bvu', 'Eucgr.C01626' => 'egr', 'Eucgr.C01709' => 'egr', 'Eucgr.C02739' => 'egr', 'Eucgr.L02576' => 'egr', 'FAN04G1340' => 'fan', 'FAN04G2963' => 'fan', 'FAN08G2754' => 'fan', 'FAN18G1420' => 'fan', 'FAN18G2855' => 'fan', 'FAN24G1383' => 'fan', 'FAN24G1684' => 'fan', 'FAN24G2268' => 'fan', 'FAN24G2789' => 'fan', 'FAN24G3294' => 'fan', 'FAN27G0609' => 'fan', 'FAN27G2147' => 'fan', 'FAN27G2153' => 'fan', 'FvH4_2g27480' => 'fve', 'FvH4_2g28680' => 'fve', 'FvH4_2g28690' => 'fve', 'FvH4_2g28701' => 'fve', 'FvH4_2g28710' => 'fve', 'FvH4_2g28712' => 'fve', 'FvH4_5g03660' => 'fve', 'FvH4_5g25410' => 'fve', 'Glyma.05G150900' => 'gma', 'Glyma.07G189600' => 'gma', 'Glyma.08G316300' => 'gma', 'Glyma.08G357100' => 'gma', 'Glyma.09G085400' => 'gma', 'Glyma.10G113700' => 'gma', 'Glyma.10G113900' => 'gma', 'Glyma.10G114100' => 'gma', 'Glyma.10G186200' => 'gma', 'Glyma.10G271300' => 'gma', 'Glyma.13G199700' => 'gma', 'Glyma.17G218100' => 'gma', 'Glyma.18G175601' => 'gma', 'Glyma.18G276100' => 'gma', 'Glyma.20G204300' => 'gma', 'Gohir.A07G029700' => 'ghi', 'Gohir.A13G061900' => 'ghi', 'Gohir.D07G033550' => 'ghi', 'Gohir.D13G060100' => 'ghi', 'Gorai.013G068000' => 'gra', 'HanXRQChr03g0079111' => 'han', 'HanXRQChr12g0373391' => 'han', 'HanXRQChr13g0400031' => 'han', 'HanXRQChr16g0511881' => 'han', 'Haze_21485' => 'cav', 'Haze_21486' => 'cav', 'HPP92_015931' => 'vpl', 'HPP92_021690' => 'vpl', 'HPP92_021691' => 'vpl', 'HPP92_021711' => 'vpl', 'HPP92_021712' => 'vpl', 'Lalb_Chr03g0036441' => 'lal', 'Lalb_Chr07g0186891' => 'lal', 'Lalb_Chr07g0186901' => 'lal', 'Lalb_Chr12g0205711' => 'lal', 'Lalb_Chr12g0205721' => 'lal', 'Lalb_Chr13g0294691' => 'lal', 'Lalb_Chr13g0294711' => 'lal', 'Lalb_Chr13g0294721' => 'lal', 'Lalb_Chr17g0336761' => 'lal', 'Lalb_Chr21g0316211' => 'lal', 'Lalb_Chr21g0316231' => 'lal', 'Lj3g0023162' => 'lja', 'Lj4g0004287' => 'lja', 'Lj4g0011737' => 'lja', 'Lj4g0014854' => 'lja', 'Lj4g0019656' => 'lja', 'Lj4g0020170' => 'lja', 'Lj4g0027202' => 'lja', 'Lj5g0009014' => 'lja', 'Lj6g0004190' => 'lja', 'Lj6g0012802' => 'lja', 'Lj6g0014356' => 'lja', 'Lj7E726T0' => 'lonja', 'Lsat_1_v5_gn_1_106201' => 'lsa', 'Lsat_1_v5_gn_6_115761' => 'lsa', 'Lsat_1_v5_gn_6_115781' => 'lsa', 'Lsat_1_v5_gn_6_115820' => 'lsa', 'Lsat_1_v5_gn_6_27980' => 'lsa', 'Lsat_1_v5_gn_6_28121' => 'lsa', 'Manes.02G218600' => 'mes', 'Manes.16G124600' => 'mes', 'MBI07_g01997_MAGBIO' => 'mbi', 'MBI07_g02003_MAGBIO' => 'mbi', 'MBI07_g02004_MAGBIO' => 'mbi', 'MBI18_g29804_MAGBIO' => 'mbi', 'MD08G1079500' => 'mdo', 'MD08G1151500' => 'mdo', 'MD15G1128800' => 'mdo', 'MD15G1128900' => 'mdo', 'Medtr0100s0140' => 'mtr', 'Medtr1g040785' => 'mtr', 'Medtr1g040815' => 'mtr', 'Medtr1g040845' => 'mtr', 'Medtr1g048300' => 'mtr', 'Medtr1g049240' => 'mtr', 'Medtr2g063010' => 'mtr', 'Medtr2g438190' => 'mtr', 'Medtr5g042350' => 'mtr', 'Medtr6g445140' => 'mtr', 'Medtr8g042530' => 'mtr', 'MELO3C003721.2' => 'cme', 'MELO3C033004.2' => 'cme', 'MSTRG.25250' => 'ama', 'Os02g0511600' => 'osa', 'Os11g0222800' => 'osa', 'Os11g0224200' => 'osa', 'Os11g0224301' => 'osa', 'PGR044G0606' => 'pgr', 'PGSC0003DMG400004421' => 'stu', 'Phvul.001G045800' => 'pvu', 'Phvul.002G171300' => 'pvu', 'Phvul.004G057100' => 'pvu', 'Phvul.006G043500' => 'pvu', 'Phvul.007G030200' => 'pvu', 'Phvul.007G030500' => 'pvu', 'Phvul.007G239600' => 'pvu', 'Phvul.008G024700' => 'pvu', 'Phvul.009G216600' => 'pvu', 'Phvul.009G216700' => 'pvu', 'Phvul.010G051700' => 'pvu', 'Potri.004G167900' => 'ptr', 'Potri.006G257600' => 'ptr', 'Potri.009G129400' => 'ptr', 'Prupe.1G484000' => 'ppe', 'Prupe.1G484100' => 'ppe', 'Prupe.1G484200' => 'ppe', 'Psat0s2453g0040' => 'psa', 'Psat0s2453g0080' => 'psa', 'Psat0s2453g0120' => 'psa', 'Psat0s2453g0200' => 'psa', 'Psat0s2453g0240' => 'psa', 'Psat0s3990g0120' => 'psa', 'Psat1g016120' => 'psa', 'Psat3g204760' => 'psa', 'Psat6g048880' => 'psa', 'PSO478G3089' => 'pso', 'PSO478G4527' => 'pso', 'PSO541G0501' => 'pso', 'PSO541G2996' => 'pso', 'PSO541G3291' => 'pso', 'PSO675G0727' => 'pso', 'PSO675G1843' => 'pso', 'PSO675G1869' => 'pso', 'QL02p021022' => 'qlo', 'QL07p000821' => 'qlo', 'QL07p000848' => 'qlo', 'QL07p000880' => 'qlo', 'QL12p013627' => 'qlo', 'QL12p013638' => 'qlo', 'RcHm_v2.0_Chr6g0286461' => 'rch', 'RcHm_v2.0_Chr6g0297451' => 'rch', 'RcHm_v2.0_Chr6g0297461' => 'rch', 'RcHm_v2.0_Chr6g0297491' => 'rch', 'Rhsim04G0089500' => 'rsi', 'Rhsim04G0091300' => 'rsi', 'Rhsim04G0092100' => 'rsi', 'Rhsim04G0092600' => 'rsi', 'Sabra06G0201500' => 'sbr', 'Sabra09G0098900' => 'sbr', 'SalBow6G4108' => 'sbo', 'Sc03g0006280' => 'sci', 'Sc03g0006290' => 'sci', 'Sc06g0000520' => 'sci', 'Sc23g0006630' => 'sci', 'Sed0003642' => 'sed', 'Sed0003760' => 'sed', 'Sed0010450' => 'sed', 'Sed0012505' => 'sed', 'Sed0018471' => 'sed', 'Sed0025130' => 'sed', 'SGA_v2.0_scaffold116G32303' => 'sas', 'SGA_v2.0_scaffold71G23793' => 'sas', 'SGA_v2.0_scaffold71G23794' => 'sas', 'Solyc10g054673.1' => 'sly', 'Solyc10g054677.1' => 'sly', 'Sopen10g024540' => 'spe', 'Sopen10g024580' => 'spe', 'Sp2g10630' => 'spa', 'Sp2g10650' => 'spa', 'Sp2g10660' => 'spa', 'Sp7g29890' => 'spa', 'Sp7g29900' => 'spa', 'SpUn0983_0010' => 'spa', 'SpUn0983_0020' => 'spa', 'TAR371G0865' => 'tar', 'TAR622G0422' => 'tar', 'TAR622G0534' => 'tar', 'TAR622G1058' => 'tar', 'TAR629G0897' => 'tar', 'TAR629G2934' => 'tar', 'THA.LOC104803439' => 'tha', 'THA.LOC104818604' => 'tha', 'THA.LOC104818605' => 'tha', 'THA.LOC104818607' => 'tha', 'THA.LOC104818610' => 'tha', 'THA.LOC104818611' => 'tha', 'Thecc.02G154500' => 'tca', 'Thecc.02G154600' => 'tca', 'Thecc.09G021200' => 'tca', 'Thhalv10001075m.g' => 'esa', 'Thhalv10001150m.g' => 'esa', 'Thhalv10009797m.g' => 'esa', 'Thhalv10026845m.g' => 'esa', 'Thhalv10027525m.g' => 'esa', 'Thhalv10027554m.g' => 'esa', 'TPR.G19813' => 'tpr', 'TPR.G19820' => 'tpr', 'TPR.G3270' => 'tpr', 'TPR.G35350' => 'tpr', 'TPR.G35354' => 'tpr', 'TPR.G35694' => 'tpr', 'TPR.G3595' => 'tpr', 'TPR.G3968' => 'tpr', 'TPR.G3970' => 'tpr', 'TPR.G8' => 'tpr', 'TPR.G9069' => 'tpr', 'TWI34G0730' => 'twi', 'TWI34G0812' => 'twi', 'TWI63G0410' => 'twi', 'TWI63G1514' => 'twi', 'VMungo0331G0458' => 'vmu', 'VMungo0331G0739' => 'vmu', 'VMungo0464G0399' => 'vmu', 'VMungo0464G1322' => 'vmu', 'VMungo0464G1777' => 'vmu', 'VMungo0540G2413' => 'vmu', 'VMungo0720G0118' => 'vmu', 'VMungo0720G1259' => 'vmu', 'VMungo0720G3158' => 'vmu', 'Zm00001eb085230' => 'zma', 'Zm00001eb170490' => 'zma', 'Zm00001eb170500' => 'zma', 'Zm00001eb307030' => 'zma', 'Zm00001eb421200' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001817' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001817' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001817' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001817' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '361', 'num_species' => '76' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p06190' => 'bna', 'A01p06200' => 'bna', 'A01p06210' => 'bna', 'A01p06720' => 'bna', 'A01p06730' => 'bna', 'A01p06740' => 'bna', 'A02p29300' => 'bna', 'A02p29320' => 'bna', 'A02p29330' => 'bna', 'A03p61240' => 'bna', 'A06p46400' => 'bna', 'Aa31LG2G17850' => 'aar', 'Aa31LG2G17870' => 'aar', 'Actinidia22324' => 'ach', 'AL7G19750' => 'aly', 'AL7G19780' => 'aly', 'AL7G19790' => 'aly', 'AL7G19800' => 'aly', 'AL7G19810' => 'aly', 'Aqoxy4G00786' => 'aox', 'Aqoxy5G03160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07A84U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27HQCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D36J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36N5BX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62PV47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW32B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W5KIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUNV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0VXY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1WXPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9XFHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFW6MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1V55D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3P3AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWA25E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUQM4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4PYL' => 'arhy', 'AT4G32090' => 'ath', 'AT4G32100' => 'ath', 'AT4G32105' => 'ath', 'AT4G32110' => 'ath', 'ATR0582G117' => 'atr', 'ATR0582G157' => 'atr', 'ATR0582G316' => 'atr', 'ATR0582G378' => 'atr', 'Atru.chr12.564' => 'acertr', 'Atru.chr6.250' => 'acertr', 'Atru.chr7.2470' => 'acertr', 'Atru.chr7.2473' => 'acertr', 'Atru.chr7.2474' => 'acertr', 'Atru.chr7.2476' => 'acertr', 'AUR62012432' => 'cqu', 'AUR62029426' => 'cqu', 'BcaB03g11963' => 'bca', 'BcaB07g30432' => 'bca', 'BcaB07g30433' => 'bca', 'BcaC03g16784' => 'bca', 'BcaC03g16785' => 'bca', 'BcaC06g31519' => 'bca', 'BcaC06g34407' => 'bca', 'BcaC09g51932' => 'bca', 'BcaC09g51998' => 'bca', 'BcaNung03137' => 'bca', 'BcaNung03138' => 'bca', 'BolC1t00680H' => 'bol', 'BolC1t00681H' => 'bol', 'BolC1t00731H' => 'bol', 'BolC2t10708H' => 'bol', 'BolC7t43441H' => 'bol', 'BolC7t46357H' => 'bol', 'BraA01t00587Z' => 'bra', 'BraA01t00588Z' => 'bra', 'BraA01t00629Z' => 'bra', 'BraA02t07960Z' => 'bra', 'BraA03t15168Z' => 'bra', 'BraA06t27504Z' => 'bra', 'C01p06830' => 'bna', 'C01p06840' => 'bna', 'C01p06850' => 'bna', 'C01p07480' => 'bna', 'C01p07490' => 'bna', 'C01p07500' => 'bna', 'C02p46550' => 'bna', 'C02p46580' => 'bna', 'C02p46590' => 'bna', 'C07p29020' => 'bna', 'C07p59090' => 'bna', 'CAN.G111.7' => 'can', 'CANSAT25G3871' => 'cansat', 'CARHR239990' => 'chi', 'CARHR240000' => 'chi', 'CARHR240010' => 'chi', 'CARHR240020' => 'chi', 'Carub.0007s0845' => 'cru', 'Carub.0007s0846' => 'cru', 'Carub.0007s0847' => 'cru', 'Ca_03322_v3' => 'car', 'CDE02G0050' => 'cde', 'CDE05G3187' => 'cde', 'CDE06G0004' => 'cde', 'Ciclev10009917m.g' => 'ccl', 'Ciclev10010457m.g' => 'ccl', 'CiPaw.08G009300' => 'cil', 'ClCG05G016680' => 'cla', 'ClCG05G016690' => 'cla', 'COL.COLO4_18892' => 'col', 'Cpa.g.sc187.6' => 'cpa', 'CsaV3_3G046170' => 'csa', 'CsaV3_3G046190' => 'csa', 'CsaV3_6G045660' => 'csa', 'DCAR_004364' => 'dca', 'DCAR_015990' => 'dca', 'Dinv24980' => 'din', 'Dinv26451' => 'din', 'Duzib052G0237' => 'dzi', 'Duzib150G1023' => 'dzi', 'Duzib168G0445' => 'dzi', 'ECA246G0220' => 'eca', 'EL10Ac2g04174' => 'bvu', 'EL10Ac6g15442' => 'bvu', 'Eucgr.C01626' => 'egr', 'Eucgr.C01709' => 'egr', 'Eucgr.C02739' => 'egr', 'Eucgr.L02576' => 'egr', 'FAN04G1340' => 'fan', 'FAN04G2963' => 'fan', 'FAN08G2754' => 'fan', 'FAN18G1420' => 'fan', 'FAN18G2855' => 'fan', 'FAN24G1383' => 'fan', 'FAN24G1684' => 'fan', 'FAN24G2268' => 'fan', 'FAN24G2789' => 'fan', 'FAN24G3294' => 'fan', 'FAN27G0609' => 'fan', 'FAN27G2147' => 'fan', 'FAN27G2153' => 'fan', 'FvH4_2g27480' => 'fve', 'FvH4_2g28680' => 'fve', 'FvH4_2g28690' => 'fve', 'FvH4_2g28701' => 'fve', 'FvH4_2g28710' => 'fve', 'FvH4_2g28712' => 'fve', 'FvH4_5g03660' => 'fve', 'FvH4_5g25410' => 'fve', 'Glyma.05G150900' => 'gma', 'Glyma.07G189600' => 'gma', 'Glyma.08G316300' => 'gma', 'Glyma.08G357100' => 'gma', 'Glyma.09G085400' => 'gma', 'Glyma.10G113700' => 'gma', 'Glyma.10G113900' => 'gma', 'Glyma.10G114100' => 'gma', 'Glyma.10G186200' => 'gma', 'Glyma.10G271300' => 'gma', 'Glyma.13G199700' => 'gma', 'Glyma.17G218100' => 'gma', 'Glyma.18G175601' => 'gma', 'Glyma.18G276100' => 'gma', 'Glyma.20G204300' => 'gma', 'Gohir.A07G029700' => 'ghi', 'Gohir.A13G061900' => 'ghi', 'Gohir.D07G033550' => 'ghi', 'Gohir.D13G060100' => 'ghi', 'Gorai.013G068000' => 'gra', 'HanXRQChr03g0079111' => 'han', 'HanXRQChr12g0373391' => 'han', 'HanXRQChr13g0400031' => 'han', 'HanXRQChr16g0511881' => 'han', 'Haze_21485' => 'cav', 'Haze_21486' => 'cav', 'HPP92_015931' => 'vpl', 'HPP92_021690' => 'vpl', 'HPP92_021691' => 'vpl', 'HPP92_021711' => 'vpl', 'HPP92_021712' => 'vpl', 'Lalb_Chr03g0036441' => 'lal', 'Lalb_Chr07g0186891' => 'lal', 'Lalb_Chr07g0186901' => 'lal', 'Lalb_Chr12g0205711' => 'lal', 'Lalb_Chr12g0205721' => 'lal', 'Lalb_Chr13g0294691' => 'lal', 'Lalb_Chr13g0294711' => 'lal', 'Lalb_Chr13g0294721' => 'lal', 'Lalb_Chr17g0336761' => 'lal', 'Lalb_Chr21g0316211' => 'lal', 'Lalb_Chr21g0316231' => 'lal', 'Lj3g0023162' => 'lja', 'Lj4g0004287' => 'lja', 'Lj4g0011737' => 'lja', 'Lj4g0014854' => 'lja', 'Lj4g0019656' => 'lja', 'Lj4g0020170' => 'lja', 'Lj4g0027202' => 'lja', 'Lj5g0009014' => 'lja', 'Lj6g0004190' => 'lja', 'Lj6g0012802' => 'lja', 'Lj6g0014356' => 'lja', 'Lj7E726T0' => 'lonja', 'Lsat_1_v5_gn_1_106201' => 'lsa', 'Lsat_1_v5_gn_6_115761' => 'lsa', 'Lsat_1_v5_gn_6_115781' => 'lsa', 'Lsat_1_v5_gn_6_115820' => 'lsa', 'Lsat_1_v5_gn_6_27980' => 'lsa', 'Lsat_1_v5_gn_6_28121' => 'lsa', 'Manes.02G218600' => 'mes', 'Manes.16G124600' => 'mes', 'MBI07_g01997_MAGBIO' => 'mbi', 'MBI07_g02003_MAGBIO' => 'mbi', 'MBI07_g02004_MAGBIO' => 'mbi', 'MBI18_g29804_MAGBIO' => 'mbi', 'MD08G1079500' => 'mdo', 'MD08G1151500' => 'mdo', 'MD15G1128800' => 'mdo', 'MD15G1128900' => 'mdo', 'Medtr0100s0140' => 'mtr', 'Medtr1g040785' => 'mtr', 'Medtr1g040815' => 'mtr', 'Medtr1g040845' => 'mtr', 'Medtr1g048300' => 'mtr', 'Medtr1g049240' => 'mtr', 'Medtr2g063010' => 'mtr', 'Medtr2g438190' => 'mtr', 'Medtr5g042350' => 'mtr', 'Medtr6g445140' => 'mtr', 'Medtr8g042530' => 'mtr', 'MELO3C003721.2' => 'cme', 'MELO3C033004.2' => 'cme', 'MSTRG.25250' => 'ama', 'Os02g0511600' => 'osa', 'Os11g0222800' => 'osa', 'Os11g0224200' => 'osa', 'Os11g0224301' => 'osa', 'PGR044G0606' => 'pgr', 'PGSC0003DMG400004421' => 'stu', 'Phvul.001G045800' => 'pvu', 'Phvul.002G171300' => 'pvu', 'Phvul.004G057100' => 'pvu', 'Phvul.006G043500' => 'pvu', 'Phvul.007G030200' => 'pvu', 'Phvul.007G030500' => 'pvu', 'Phvul.007G239600' => 'pvu', 'Phvul.008G024700' => 'pvu', 'Phvul.009G216600' => 'pvu', 'Phvul.009G216700' => 'pvu', 'Phvul.010G051700' => 'pvu', 'Potri.004G167900' => 'ptr', 'Potri.006G257600' => 'ptr', 'Potri.009G129400' => 'ptr', 'Prupe.1G484000' => 'ppe', 'Prupe.1G484100' => 'ppe', 'Prupe.1G484200' => 'ppe', 'Psat0s2453g0040' => 'psa', 'Psat0s2453g0080' => 'psa', 'Psat0s2453g0120' => 'psa', 'Psat0s2453g0200' => 'psa', 'Psat0s2453g0240' => 'psa', 'Psat0s3990g0120' => 'psa', 'Psat1g016120' => 'psa', 'Psat3g204760' => 'psa', 'Psat6g048880' => 'psa', 'PSO478G3089' => 'pso', 'PSO478G4527' => 'pso', 'PSO541G0501' => 'pso', 'PSO541G2996' => 'pso', 'PSO541G3291' => 'pso', 'PSO675G0727' => 'pso', 'PSO675G1843' => 'pso', 'PSO675G1869' => 'pso', 'QL02p021022' => 'qlo', 'QL07p000821' => 'qlo', 'QL07p000848' => 'qlo', 'QL07p000880' => 'qlo', 'QL12p013627' => 'qlo', 'QL12p013638' => 'qlo', 'RcHm_v2.0_Chr6g0286461' => 'rch', 'RcHm_v2.0_Chr6g0297451' => 'rch', 'RcHm_v2.0_Chr6g0297461' => 'rch', 'RcHm_v2.0_Chr6g0297491' => 'rch', 'Rhsim04G0089500' => 'rsi', 'Rhsim04G0091300' => 'rsi', 'Rhsim04G0092100' => 'rsi', 'Rhsim04G0092600' => 'rsi', 'Sabra06G0201500' => 'sbr', 'Sabra09G0098900' => 'sbr', 'SalBow6G4108' => 'sbo', 'Sc03g0006280' => 'sci', 'Sc03g0006290' => 'sci', 'Sc06g0000520' => 'sci', 'Sc23g0006630' => 'sci', 'Sed0003642' => 'sed', 'Sed0003760' => 'sed', 'Sed0010450' => 'sed', 'Sed0012505' => 'sed', 'Sed0018471' => 'sed', 'Sed0025130' => 'sed', 'SGA_v2.0_scaffold116G32303' => 'sas', 'SGA_v2.0_scaffold71G23793' => 'sas', 'SGA_v2.0_scaffold71G23794' => 'sas', 'Solyc10g054673.1' => 'sly', 'Solyc10g054677.1' => 'sly', 'Sopen10g024540' => 'spe', 'Sopen10g024580' => 'spe', 'Sp2g10630' => 'spa', 'Sp2g10650' => 'spa', 'Sp2g10660' => 'spa', 'Sp7g29890' => 'spa', 'Sp7g29900' => 'spa', 'SpUn0983_0010' => 'spa', 'SpUn0983_0020' => 'spa', 'TAR371G0865' => 'tar', 'TAR622G0422' => 'tar', 'TAR622G0534' => 'tar', 'TAR622G1058' => 'tar', 'TAR629G0897' => 'tar', 'TAR629G2934' => 'tar', 'THA.LOC104803439' => 'tha', 'THA.LOC104818604' => 'tha', 'THA.LOC104818605' => 'tha', 'THA.LOC104818607' => 'tha', 'THA.LOC104818610' => 'tha', 'THA.LOC104818611' => 'tha', 'Thecc.02G154500' => 'tca', 'Thecc.02G154600' => 'tca', 'Thecc.09G021200' => 'tca', 'Thhalv10001075m.g' => 'esa', 'Thhalv10001150m.g' => 'esa', 'Thhalv10009797m.g' => 'esa', 'Thhalv10026845m.g' => 'esa', 'Thhalv10027525m.g' => 'esa', 'Thhalv10027554m.g' => 'esa', 'TPR.G19813' => 'tpr', 'TPR.G19820' => 'tpr', 'TPR.G3270' => 'tpr', 'TPR.G35350' => 'tpr', 'TPR.G35354' => 'tpr', 'TPR.G35694' => 'tpr', 'TPR.G3595' => 'tpr', 'TPR.G3968' => 'tpr', 'TPR.G3970' => 'tpr', 'TPR.G8' => 'tpr', 'TPR.G9069' => 'tpr', 'TWI34G0730' => 'twi', 'TWI34G0812' => 'twi', 'TWI63G0410' => 'twi', 'TWI63G1514' => 'twi', 'VMungo0331G0458' => 'vmu', 'VMungo0331G0739' => 'vmu', 'VMungo0464G0399' => 'vmu', 'VMungo0464G1322' => 'vmu', 'VMungo0464G1777' => 'vmu', 'VMungo0540G2413' => 'vmu', 'VMungo0720G0118' => 'vmu', 'VMungo0720G1259' => 'vmu', 'VMungo0720G3158' => 'vmu', 'Zm00001eb085230' => 'zma', 'Zm00001eb170490' => 'zma', 'Zm00001eb170500' => 'zma', 'Zm00001eb307030' => 'zma', 'Zm00001eb421200' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001817', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001817' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '361', 'num_species' => '76' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001817' ) ), 'genes' => array( 'A01p06190' => 'bna', 'A01p06200' => 'bna', 'A01p06210' => 'bna', 'A01p06720' => 'bna', 'A01p06730' => 'bna', 'A01p06740' => 'bna', 'A02p29300' => 'bna', 'A02p29320' => 'bna', 'A02p29330' => 'bna', 'A03p61240' => 'bna', 'A06p46400' => 'bna', 'Aa31LG2G17850' => 'aar', 'Aa31LG2G17870' => 'aar', 'Actinidia22324' => 'ach', 'AL7G19750' => 'aly', 'AL7G19780' => 'aly', 'AL7G19790' => 'aly', 'AL7G19800' => 'aly', 'AL7G19810' => 'aly', 'Aqoxy4G00786' => 'aox', 'Aqoxy5G03160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07A84U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27HQCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D36J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36N5BX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62PV47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW32B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W5KIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUNV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0VXY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1WXPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9XFHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFW6MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1V55D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3P3AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWA25E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUQM4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4PYL' => 'arhy', 'AT4G32090' => 'ath', 'AT4G32100' => 'ath', 'AT4G32105' => 'ath', 'AT4G32110' => 'ath', 'ATR0582G117' => 'atr', 'ATR0582G157' => 'atr', 'ATR0582G316' => 'atr', 'ATR0582G378' => 'atr', 'Atru.chr12.564' => 'acertr', 'Atru.chr6.250' => 'acertr', 'Atru.chr7.2470' => 'acertr', 'Atru.chr7.2473' => 'acertr', 'Atru.chr7.2474' => 'acertr', 'Atru.chr7.2476' => 'acertr', 'AUR62012432' => 'cqu', 'AUR62029426' => 'cqu', 'BcaB03g11963' => 'bca', 'BcaB07g30432' => 'bca', 'BcaB07g30433' => 'bca', 'BcaC03g16784' => 'bca', 'BcaC03g16785' => 'bca', 'BcaC06g31519' => 'bca', 'BcaC06g34407' => 'bca', 'BcaC09g51932' => 'bca', 'BcaC09g51998' => 'bca', 'BcaNung03137' => 'bca', 'BcaNung03138' => 'bca', 'BolC1t00680H' => 'bol', 'BolC1t00681H' => 'bol', 'BolC1t00731H' => 'bol', 'BolC2t10708H' => 'bol', 'BolC7t43441H' => 'bol', 'BolC7t46357H' => 'bol', 'BraA01t00587Z' => 'bra', 'BraA01t00588Z' => 'bra', 'BraA01t00629Z' => 'bra', 'BraA02t07960Z' => 'bra', 'BraA03t15168Z' => 'bra', 'BraA06t27504Z' => 'bra', 'C01p06830' => 'bna', 'C01p06840' => 'bna', 'C01p06850' => 'bna', 'C01p07480' => 'bna', 'C01p07490' => 'bna', 'C01p07500' => 'bna', 'C02p46550' => 'bna', 'C02p46580' => 'bna', 'C02p46590' => 'bna', 'C07p29020' => 'bna', 'C07p59090' => 'bna', 'CAN.G111.7' => 'can', 'CANSAT25G3871' => 'cansat', 'CARHR239990' => 'chi', 'CARHR240000' => 'chi', 'CARHR240010' => 'chi', 'CARHR240020' => 'chi', 'Carub.0007s0845' => 'cru', 'Carub.0007s0846' => 'cru', 'Carub.0007s0847' => 'cru', 'Ca_03322_v3' => 'car', 'CDE02G0050' => 'cde', 'CDE05G3187' => 'cde', 'CDE06G0004' => 'cde', 'Ciclev10009917m.g' => 'ccl', 'Ciclev10010457m.g' => 'ccl', 'CiPaw.08G009300' => 'cil', 'ClCG05G016680' => 'cla', 'ClCG05G016690' => 'cla', 'COL.COLO4_18892' => 'col', 'Cpa.g.sc187.6' => 'cpa', 'CsaV3_3G046170' => 'csa', 'CsaV3_3G046190' => 'csa', 'CsaV3_6G045660' => 'csa', 'DCAR_004364' => 'dca', 'DCAR_015990' => 'dca', 'Dinv24980' => 'din', 'Dinv26451' => 'din', 'Duzib052G0237' => 'dzi', 'Duzib150G1023' => 'dzi', 'Duzib168G0445' => 'dzi', 'ECA246G0220' => 'eca', 'EL10Ac2g04174' => 'bvu', 'EL10Ac6g15442' => 'bvu', 'Eucgr.C01626' => 'egr', 'Eucgr.C01709' => 'egr', 'Eucgr.C02739' => 'egr', 'Eucgr.L02576' => 'egr', 'FAN04G1340' => 'fan', 'FAN04G2963' => 'fan', 'FAN08G2754' => 'fan', 'FAN18G1420' => 'fan', 'FAN18G2855' => 'fan', 'FAN24G1383' => 'fan', 'FAN24G1684' => 'fan', 'FAN24G2268' => 'fan', 'FAN24G2789' => 'fan', 'FAN24G3294' => 'fan', 'FAN27G0609' => 'fan', 'FAN27G2147' => 'fan', 'FAN27G2153' => 'fan', 'FvH4_2g27480' => 'fve', 'FvH4_2g28680' => 'fve', 'FvH4_2g28690' => 'fve', 'FvH4_2g28701' => 'fve', 'FvH4_2g28710' => 'fve', 'FvH4_2g28712' => 'fve', 'FvH4_5g03660' => 'fve', 'FvH4_5g25410' => 'fve', 'Glyma.05G150900' => 'gma', 'Glyma.07G189600' => 'gma', 'Glyma.08G316300' => 'gma', 'Glyma.08G357100' => 'gma', 'Glyma.09G085400' => 'gma', 'Glyma.10G113700' => 'gma', 'Glyma.10G113900' => 'gma', 'Glyma.10G114100' => 'gma', 'Glyma.10G186200' => 'gma', 'Glyma.10G271300' => 'gma', 'Glyma.13G199700' => 'gma', 'Glyma.17G218100' => 'gma', 'Glyma.18G175601' => 'gma', 'Glyma.18G276100' => 'gma', 'Glyma.20G204300' => 'gma', 'Gohir.A07G029700' => 'ghi', 'Gohir.A13G061900' => 'ghi', 'Gohir.D07G033550' => 'ghi', 'Gohir.D13G060100' => 'ghi', 'Gorai.013G068000' => 'gra', 'HanXRQChr03g0079111' => 'han', 'HanXRQChr12g0373391' => 'han', 'HanXRQChr13g0400031' => 'han', 'HanXRQChr16g0511881' => 'han', 'Haze_21485' => 'cav', 'Haze_21486' => 'cav', 'HPP92_015931' => 'vpl', 'HPP92_021690' => 'vpl', 'HPP92_021691' => 'vpl', 'HPP92_021711' => 'vpl', 'HPP92_021712' => 'vpl', 'Lalb_Chr03g0036441' => 'lal', 'Lalb_Chr07g0186891' => 'lal', 'Lalb_Chr07g0186901' => 'lal', 'Lalb_Chr12g0205711' => 'lal', 'Lalb_Chr12g0205721' => 'lal', 'Lalb_Chr13g0294691' => 'lal', 'Lalb_Chr13g0294711' => 'lal', 'Lalb_Chr13g0294721' => 'lal', 'Lalb_Chr17g0336761' => 'lal', 'Lalb_Chr21g0316211' => 'lal', 'Lalb_Chr21g0316231' => 'lal', 'Lj3g0023162' => 'lja', 'Lj4g0004287' => 'lja', 'Lj4g0011737' => 'lja', 'Lj4g0014854' => 'lja', 'Lj4g0019656' => 'lja', 'Lj4g0020170' => 'lja', 'Lj4g0027202' => 'lja', 'Lj5g0009014' => 'lja', 'Lj6g0004190' => 'lja', 'Lj6g0012802' => 'lja', 'Lj6g0014356' => 'lja', 'Lj7E726T0' => 'lonja', 'Lsat_1_v5_gn_1_106201' => 'lsa', 'Lsat_1_v5_gn_6_115761' => 'lsa', 'Lsat_1_v5_gn_6_115781' => 'lsa', 'Lsat_1_v5_gn_6_115820' => 'lsa', 'Lsat_1_v5_gn_6_27980' => 'lsa', 'Lsat_1_v5_gn_6_28121' => 'lsa', 'Manes.02G218600' => 'mes', 'Manes.16G124600' => 'mes', 'MBI07_g01997_MAGBIO' => 'mbi', 'MBI07_g02003_MAGBIO' => 'mbi', 'MBI07_g02004_MAGBIO' => 'mbi', 'MBI18_g29804_MAGBIO' => 'mbi', 'MD08G1079500' => 'mdo', 'MD08G1151500' => 'mdo', 'MD15G1128800' => 'mdo', 'MD15G1128900' => 'mdo', 'Medtr0100s0140' => 'mtr', 'Medtr1g040785' => 'mtr', 'Medtr1g040815' => 'mtr', 'Medtr1g040845' => 'mtr', 'Medtr1g048300' => 'mtr', 'Medtr1g049240' => 'mtr', 'Medtr2g063010' => 'mtr', 'Medtr2g438190' => 'mtr', 'Medtr5g042350' => 'mtr', 'Medtr6g445140' => 'mtr', 'Medtr8g042530' => 'mtr', 'MELO3C003721.2' => 'cme', 'MELO3C033004.2' => 'cme', 'MSTRG.25250' => 'ama', 'Os02g0511600' => 'osa', 'Os11g0222800' => 'osa', 'Os11g0224200' => 'osa', 'Os11g0224301' => 'osa', 'PGR044G0606' => 'pgr', 'PGSC0003DMG400004421' => 'stu', 'Phvul.001G045800' => 'pvu', 'Phvul.002G171300' => 'pvu', 'Phvul.004G057100' => 'pvu', 'Phvul.006G043500' => 'pvu', 'Phvul.007G030200' => 'pvu', 'Phvul.007G030500' => 'pvu', 'Phvul.007G239600' => 'pvu', 'Phvul.008G024700' => 'pvu', 'Phvul.009G216600' => 'pvu', 'Phvul.009G216700' => 'pvu', 'Phvul.010G051700' => 'pvu', 'Potri.004G167900' => 'ptr', 'Potri.006G257600' => 'ptr', 'Potri.009G129400' => 'ptr', 'Prupe.1G484000' => 'ppe', 'Prupe.1G484100' => 'ppe', 'Prupe.1G484200' => 'ppe', 'Psat0s2453g0040' => 'psa', 'Psat0s2453g0080' => 'psa', 'Psat0s2453g0120' => 'psa', 'Psat0s2453g0200' => 'psa', 'Psat0s2453g0240' => 'psa', 'Psat0s3990g0120' => 'psa', 'Psat1g016120' => 'psa', 'Psat3g204760' => 'psa', 'Psat6g048880' => 'psa', 'PSO478G3089' => 'pso', 'PSO478G4527' => 'pso', 'PSO541G0501' => 'pso', 'PSO541G2996' => 'pso', 'PSO541G3291' => 'pso', 'PSO675G0727' => 'pso', 'PSO675G1843' => 'pso', 'PSO675G1869' => 'pso', 'QL02p021022' => 'qlo', 'QL07p000821' => 'qlo', 'QL07p000848' => 'qlo', 'QL07p000880' => 'qlo', 'QL12p013627' => 'qlo', 'QL12p013638' => 'qlo', 'RcHm_v2.0_Chr6g0286461' => 'rch', 'RcHm_v2.0_Chr6g0297451' => 'rch', 'RcHm_v2.0_Chr6g0297461' => 'rch', 'RcHm_v2.0_Chr6g0297491' => 'rch', 'Rhsim04G0089500' => 'rsi', 'Rhsim04G0091300' => 'rsi', 'Rhsim04G0092100' => 'rsi', 'Rhsim04G0092600' => 'rsi', 'Sabra06G0201500' => 'sbr', 'Sabra09G0098900' => 'sbr', 'SalBow6G4108' => 'sbo', 'Sc03g0006280' => 'sci', 'Sc03g0006290' => 'sci', 'Sc06g0000520' => 'sci', 'Sc23g0006630' => 'sci', 'Sed0003642' => 'sed', 'Sed0003760' => 'sed', 'Sed0010450' => 'sed', 'Sed0012505' => 'sed', 'Sed0018471' => 'sed', 'Sed0025130' => 'sed', 'SGA_v2.0_scaffold116G32303' => 'sas', 'SGA_v2.0_scaffold71G23793' => 'sas', 'SGA_v2.0_scaffold71G23794' => 'sas', 'Solyc10g054673.1' => 'sly', 'Solyc10g054677.1' => 'sly', 'Sopen10g024540' => 'spe', 'Sopen10g024580' => 'spe', 'Sp2g10630' => 'spa', 'Sp2g10650' => 'spa', 'Sp2g10660' => 'spa', 'Sp7g29890' => 'spa', 'Sp7g29900' => 'spa', 'SpUn0983_0010' => 'spa', 'SpUn0983_0020' => 'spa', 'TAR371G0865' => 'tar', 'TAR622G0422' => 'tar', 'TAR622G0534' => 'tar', 'TAR622G1058' => 'tar', 'TAR629G0897' => 'tar', 'TAR629G2934' => 'tar', 'THA.LOC104803439' => 'tha', 'THA.LOC104818604' => 'tha', 'THA.LOC104818605' => 'tha', 'THA.LOC104818607' => 'tha', 'THA.LOC104818610' => 'tha', 'THA.LOC104818611' => 'tha', 'Thecc.02G154500' => 'tca', 'Thecc.02G154600' => 'tca', 'Thecc.09G021200' => 'tca', 'Thhalv10001075m.g' => 'esa', 'Thhalv10001150m.g' => 'esa', 'Thhalv10009797m.g' => 'esa', 'Thhalv10026845m.g' => 'esa', 'Thhalv10027525m.g' => 'esa', 'Thhalv10027554m.g' => 'esa', 'TPR.G19813' => 'tpr', 'TPR.G19820' => 'tpr', 'TPR.G3270' => 'tpr', 'TPR.G35350' => 'tpr', 'TPR.G35354' => 'tpr', 'TPR.G35694' => 'tpr', 'TPR.G3595' => 'tpr', 'TPR.G3968' => 'tpr', 'TPR.G3970' => 'tpr', 'TPR.G8' => 'tpr', 'TPR.G9069' => 'tpr', 'TWI34G0730' => 'twi', 'TWI34G0812' => 'twi', 'TWI63G0410' => 'twi', 'TWI63G1514' => 'twi', 'VMungo0331G0458' => 'vmu', 'VMungo0331G0739' => 'vmu', 'VMungo0464G0399' => 'vmu', 'VMungo0464G1322' => 'vmu', 'VMungo0464G1777' => 'vmu', 'VMungo0540G2413' => 'vmu', 'VMungo0720G0118' => 'vmu', 'VMungo0720G1259' => 'vmu', 'VMungo0720G3158' => 'vmu', 'Zm00001eb085230' => 'zma', 'Zm00001eb170490' => 'zma', 'Zm00001eb170500' => 'zma', 'Zm00001eb307030' => 'zma', 'Zm00001eb421200' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001817' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001817' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001817' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001817' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151