Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '365', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p64410' => 'bna', 'A03p64420' => 'bna', 'A06p33160' => 'bna', 'A07p19060' => 'bna', 'A08p22360' => 'bna', 'Aa31LG5G7720' => 'aar', 'Aa31LG6G13510' => 'aar', 'Aa31LG8G15510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.190' => 'aag', 'Actinidia07116' => 'ach', 'Actinidia19166' => 'ach', 'Actinidia24080' => 'ach', 'Ah.01g015020' => 'amhyb', 'Ah.03g139310' => 'amhyb', 'AL3G51880' => 'aly', 'AL4G22870' => 'aly', 'AL7G14310' => 'aly', 'Aqoxy4G03215' => 'aox', 'Aqoxy5G01682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3263BZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65BX45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW9F3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G27FXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0N14A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2EEE' => 'arhy', 'AT2G18540' => 'ath', 'AT2G28490' => 'ath', 'AT4G36700' => 'ath', 'ATR0733G179' => 'atr', 'ATR1159G004' => 'atr', 'Atru.chr3.537' => 'acertr', 'AUR62003182' => 'cqu', 'AUR62006523' => 'cqu', 'AUR62008002' => 'cqu', 'AUR62025011' => 'cqu', 'BcaB02g10164' => 'bca', 'BcaB03g12375' => 'bca', 'BcaB08g34828' => 'bca', 'BcaC01g00447' => 'bca', 'BcaC01g02859' => 'bca', 'BcaC02g10963' => 'bca', 'BcaC02g10964' => 'bca', 'BcaNung06145' => 'bca', 'BcaNung07141' => 'bca', 'BolC3t18190H' => 'bol', 'BolC3t20247H' => 'bol', 'BolC4t23782H' => 'bol', 'BolC7t46609H' => 'bol', 'BraA03t15508Z' => 'bra', 'BraA03t15509Z' => 'bra', 'BraA06t26247Z' => 'bra', 'BraA07t29611Z' => 'bra', 'BraA08t34192Z' => 'bra', 'C03p59290' => 'bna', 'C03p79950' => 'bna', 'C04p22860' => 'bna', 'C07p61870' => 'bna', 'CAN.G1001.13' => 'can', 'CAN.G1001.15' => 'can', 'CAN.G1001.16' => 'can', 'CAN.G1001.17' => 'can', 'CAN.G1001.19' => 'can', 'CAN.G1001.20' => 'can', 'CAN.G1001.21' => 'can', 'CAN.G1839.6' => 'can', 'CAN.G1839.7' => 'can', 'CAN.G1839.9' => 'can', 'CAN.G358.123' => 'can', 'CAN.G553.2' => 'can', 'CANSAT01G3243' => 'cansat', 'CANSAT54G1656' => 'cansat', 'CARHR109140' => 'chi', 'CARHR121490' => 'chi', 'CARHR245050' => 'chi', 'Carub.0003s3273' => 'cru', 'Carub.0004s0944' => 'cru', 'Carub.0007s0362' => 'cru', 'Ca_00392_v3' => 'car', 'Ca_01432_v3' => 'car', 'Ca_19243_v3' => 'car', 'CBR_g37795' => 'cbr', 'CBR_g48323' => 'cbr', 'CBR_g6738' => 'cbr', 'CBR_g6739' => 'cbr', 'Cc01_g11520' => 'ccan', 'Cc07_g09190' => 'ccan', 'Cc07_g09200' => 'ccan', 'CDE01G0620' => 'cde', 'CDE02G0356' => 'cde', 'CDE02G0946' => 'cde', 'CDE09G0795' => 'cde', 'Cfa004281' => 'cfa', 'Cfa011361' => 'cfa', 'Ciclev10027019m.g' => 'ccl', 'Ciclev10028266m.g' => 'ccl', 'CiPaw.01G034800' => 'cil', 'CiPaw.14G078000' => 'cil', 'ClCG01G019390' => 'cla', 'ClCG02G020970' => 'cla', 'COL.COLO4_05496' => 'col', 'COL.COLO4_06592' => 'col', 'COL.COLO4_08544' => 'col', 'COL.COLO4_22115' => 'col', 'COL.COLO4_24138' => 'col', 'COL.COLO4_25243' => 'col', 'COL.COLO4_25244' => 'col', 'Cpa.g.sc139.71' => 'cpa', 'Cpa.g.sc158.3' => 'cpa', 'Cpa.g.sc62.100' => 'cpa', 'CsaV3_6G021660' => 'csa', 'CsaV3_6G046100' => 'csa', 'CSS0016309' => 'camsi', 'CSS0019731' => 'camsi', 'CSS0045971' => 'camsi', 'DCAR_018830' => 'dca', 'DCAR_021445' => 'dca', 'Dinv04503' => 'din', 'Dinv26810' => 'din', 'Dinv26811' => 'din', 'Dinv32785' => 'din', 'Dinv32786' => 'din', 'Dinv39960' => 'din', 'Duzib168G1312' => 'dzi', 'Duzib187G1910' => 'dzi', 'ECA233G5833' => 'eca', 'ECA238G1560' => 'eca', 'ECA238G1711' => 'eca', 'ECA238G3485' => 'eca', 'ECA238G4653' => 'eca', 'ECA246G3405' => 'eca', 'EL10Ac6g14913' => 'bvu', 'EL10Ac9g22469' => 'bvu', 'Eucgr.B02472' => 'egr', 'Eucgr.J00948' => 'egr', 'FAN11G1933' => 'fan', 'FAN11G2704' => 'fan', 'FAN11G3753' => 'fan', 'FAN16G0706' => 'fan', 'FAN16G2054' => 'fan', 'FAN16G2791' => 'fan', 'FAN19G0942' => 'fan', 'FAN21G0076' => 'fan', 'FAN21G3350' => 'fan', 'FAN21G4030' => 'fan', 'FAN23G0891' => 'fan', 'FAN25G0620' => 'fan', 'FAN25G0759' => 'fan', 'FAN25G2815' => 'fan', 'FAN25G2967' => 'fan', 'FAN26G2185' => 'fan', 'FAN28G0335' => 'fan', 'FvH4_1g13730' => 'fve', 'FvH4_3g33170' => 'fve', 'FvH4_3g33180' => 'fve', 'FvH4_3g33190' => 'fve', 'FvH4_3g33240' => 'fve', 'Glyma.01G177000' => 'gma', 'Glyma.11G065800' => 'gma', 'Glyma.11G153587' => 'gma', 'Glyma.12G071600' => 'gma', 'Glyma.13G328400' => 'gma', 'Gohir.A03G161350' => 'ghi', 'Gohir.A07G116400' => 'ghi', 'Gohir.A11G186000' => 'ghi', 'Gohir.D07G120800' => 'ghi', 'Gohir.D11G192600' => 'ghi', 'Gorai.001G130200' => 'gra', 'Gorai.007G205600' => 'gra', 'GSVIVG01019005001' => 'vvi', 'GSVIVG01025139001' => 'vvi', 'HanXRQChr03g0071451' => 'han', 'HanXRQChr06g0170171' => 'han', 'HanXRQChr07g0190491' => 'han', 'HanXRQChr13g0404461' => 'han', 'Haze_15119' => 'cav', 'Haze_23907' => 'cav', 'Haze_23908' => 'cav', 'Hma1.2p1_0071F.1_g038040' => 'hma', 'Hma1.2p1_0568F.1_g180210' => 'hma', 'Hma1.2p1_0905F.1_g235320' => 'hma', 'Hma1.2p1_1228F.1_g268600' => 'hma', 'HPP92_014258' => 'vpl', 'HPP92_021307' => 'vpl', 'Lalb_Chr01g0004171' => 'lal', 'Lalb_Chr05g0212941' => 'lal', 'Lalb_Chr09g0322571' => 'lal', 'Lalb_Chr14g0374791' => 'lal', 'Lalb_Chr22g0350181' => 'lal', 'Lj2A1035T49' => 'lonja', 'Lj2C448T6' => 'lonja', 'Lj2g0000276' => 'lja', 'Lj3g0006595' => 'lja', 'Lj3g0013428' => 'lja', 'Lsat_1_v5_gn_2_76801' => 'lsa', 'Lsat_1_v5_gn_2_77901' => 'lsa', 'Lsat_1_v5_gn_3_78340' => 'lsa', 'Lsat_1_v5_gn_6_47021' => 'lsa', 'Manes.11G141600' => 'mes', 'Manes.12G089864' => 'mes', 'Manes.13G137200' => 'mes', 'MBI14_g19545_MAGBIO' => 'mbi', 'MBI16_g37295_MAGBIO' => 'mbi', 'MD02G1152000' => 'mdo', 'MD03G1105100' => 'mdo', 'MD11G1130400' => 'mdo', 'MD15G1266400' => 'mdo', 'Medtr2g093350' => 'mtr', 'Medtr2g093390' => 'mtr', 'Medtr2g093410' => 'mtr', 'Medtr2g093520' => 'mtr', 'Medtr2g093550' => 'mtr', 'Medtr2g093590' => 'mtr', 'Medtr2g093620' => 'mtr', 'Medtr2g093630' => 'mtr', 'Medtr4g060780' => 'mtr', 'Medtr5g019780' => 'mtr', 'MELO3C007813.2' => 'cme', 'MELO3C025750.2' => 'cme', 'Migut.D02185' => 'egut', 'Migut.H00185' => 'egut', 'Migut.N02619' => 'egut', 'MSTRG.18636' => 'ama', 'Nitab4.5_0000106g0050' => 'nta', 'Nitab4.5_0000196g0010' => 'nta', 'Nitab4.5_0000196g0020' => 'nta', 'Nitab4.5_0001279g0150' => 'nta', 'Nitab4.5_0001802g0100' => 'nta', 'Nitab4.5_0002128g0030' => 'nta', 'Nitab4.5_0002129g0100' => 'nta', 'Nn1g02542' => 'nnu', 'Nn1g02543' => 'nnu', 'Nn1g05077' => 'nnu', 'Nn2g10684' => 'nnu', 'Nn2g13012' => 'nnu', 'Nn4g24405' => 'nnu', 'Nn5g29533' => 'nnu', 'Oeu005907.1' => 'oeu', 'Oeu021563.1' => 'oeu', 'Oeu031890.1' => 'oeu', 'Oeu036289.1' => 'oeu', 'Oeu059105.2' => 'oeu', 'Os03g0197300' => 'osa', 'Os03g0336100' => 'osa', 'Peaxi162Scf00101g00910' => 'pax', 'Peaxi162Scf00205g00011' => 'pax', 'Peaxi162Scf00389g00093' => 'pax', 'Peaxi162Scf00427g00512' => 'pax', 'Peaxi162Scf00476g00220' => 'pax', 'Peaxi162Scf00476g00223' => 'pax', 'Peaxi162Scf00476g00315' => 'pax', 'Peaxi162Scf00476g00321' => 'pax', 'PGR102G3185' => 'pgr', 'PGR119G1372' => 'pgr', 'PGSC0003DMG400003374' => 'stu', 'PGSC0003DMG400007501' => 'stu', 'PGSC0003DMG400007502' => 'stu', 'PGSC0003DMG400012661' => 'stu', 'PGSC0003DMG400020917' => 'stu', 'PGSC0003DMG400027378' => 'stu', 'PGSC0003DMG401007500' => 'stu', 'PGSC0003DMG402007500' => 'stu', 'Phvul.002G027900' => 'pvu', 'Phvul.005G137200' => 'pvu', 'Phvul.011G072800' => 'pvu', 'Potri.001G259208' => 'ptr', 'Potri.007G029100' => 'ptr', 'Potri.009G054700' => 'ptr', 'Prupe.1G032200' => 'ppe', 'Prupe.6G095000' => 'ppe', 'Prupe.7G151000' => 'ppe', 'Psat0s137g0280' => 'psa', 'Psat2g161120' => 'psa', 'Psat5g277440' => 'psa', 'PSO063G6855' => 'pso', 'PSO170G3836' => 'pso', 'QL01p037284' => 'qlo', 'QL06p045400' => 'qlo', 'RcHm_v2.0_Chr2g0102141' => 'rch', 'RcHm_v2.0_Chr5g0060491' => 'rch', 'RcHm_v2.0_Chr5g0060501' => 'rch', 'RcHm_v2.0_Chr5g0060531' => 'rch', 'RcHm_v2.0_Chr5g0060591' => 'rch', 'Rhsim01G0219300' => 'rsi', 'Rhsim01G0219400' => 'rsi', 'Rhsim01G0219500' => 'rsi', 'Rhsim01G0219600' => 'rsi', 'Rhsim01G0219700' => 'rsi', 'Rhsim01G0219800' => 'rsi', 'Rhsim01G0219900' => 'rsi', 'Rhsim01G0220000' => 'rsi', 'Rhsim08G0112800' => 'rsi', 'Rhsim09G0035200' => 'rsi', 'Rhsim09G0035300' => 'rsi', 'Rhsim09G0035400' => 'rsi', 'Rhsim13G0092600' => 'rsi', 'Sabra05G0103400' => 'sbr', 'Sabra09G0040000' => 'sbr', 'SalBow5G5464' => 'sbo', 'Sc06g0010510' => 'sci', 'Sc16g0000950' => 'sci', 'Sed0004107' => 'sed', 'Sed0006496' => 'sed', 'SEGI_13794' => 'sgi', 'SEGI_19513' => 'sgi', 'SGA_v2.0_scaffold2G00910' => 'sas', 'SGA_v2.0_scaffold33G13385' => 'sas', 'SGA_v2.0_scaffold61G21168' => 'sas', 'SHI06059' => 'shi', 'SHI08678' => 'shi', 'SMO137G0028' => 'smo', 'SMO141G0312' => 'smo', 'SMO351G0425' => 'smo', 'SMO364G0856' => 'smo', 'Solyc02g085590.4' => 'sly', 'Solyc03g044210.4' => 'sly', 'Solyc06g075260.3' => 'sly', 'Solyc06g075270.4' => 'sly', 'Solyc06g075280.3' => 'sly', 'Solyc06g075290.4' => 'sly', 'Solyc06g075300.3' => 'sly', 'Solyc06g075320.3' => 'sly', 'Solyc11g072380.2' => 'sly', 'Sopen02g030260' => 'spe', 'Sopen03g008250' => 'spe', 'Sopen06g031650' => 'spe', 'Sopen06g031660' => 'spe', 'Sopen06g031670' => 'spe', 'Sopen06g031690' => 'spe', 'Sopen06g031700' => 'spe', 'Sopen06g031720' => 'spe', 'Sopen11g030030' => 'spe', 'Sp3g31990' => 'spa', 'Sp4g11320' => 'spa', 'Sp7g34360' => 'spa', 'TAR369G0446' => 'tar', 'TAR381G1082' => 'tar', 'TAR623G0167' => 'tar', 'TAR623G0459' => 'tar', 'THA.LOC104800613' => 'tha', 'THA.LOC104807543' => 'tha', 'THA.LOC104819798' => 'tha', 'Thecc.01G039500' => 'tca', 'Thecc.09G260000' => 'tca', 'Thhalv10017921m.g' => 'esa', 'Thhalv10024697m.g' => 'esa', 'TPR.G11484' => 'tpr', 'TPR.G11569' => 'tpr', 'TPR.G14921' => 'tpr', 'TPR.G18814' => 'tpr', 'TPR.G27035' => 'tpr', 'TWI31G0073' => 'twi', 'TWI53G1751' => 'twi', 'TWI79G1599' => 'twi', 'unitig_0.g1037' => 'ugi', 'unitig_52.g17593' => 'ugi', 'vmacro03174' => 'vma', 'vmacro14457' => 'vma', 'vmacro14458' => 'vma', 'vmacro14459' => 'vma', 'vmacro14460' => 'vma', 'vmacro14461' => 'vma', 'vmacro17861' => 'vma', 'VMungo1127G0357' => 'vmu', 'Zm00001eb016090' => 'zma', 'Zm00001eb401000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001788', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001788' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '365', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001788' ) ), 'genes' => array( 'A03p64410' => 'bna', 'A03p64420' => 'bna', 'A06p33160' => 'bna', 'A07p19060' => 'bna', 'A08p22360' => 'bna', 'Aa31LG5G7720' => 'aar', 'Aa31LG6G13510' => 'aar', 'Aa31LG8G15510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.190' => 'aag', 'Actinidia07116' => 'ach', 'Actinidia19166' => 'ach', 'Actinidia24080' => 'ach', 'Ah.01g015020' => 'amhyb', 'Ah.03g139310' => 'amhyb', 'AL3G51880' => 'aly', 'AL4G22870' => 'aly', 'AL7G14310' => 'aly', 'Aqoxy4G03215' => 'aox', 'Aqoxy5G01682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3263BZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65BX45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW9F3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G27FXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0N14A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2EEE' => 'arhy', 'AT2G18540' => 'ath', 'AT2G28490' => 'ath', 'AT4G36700' => 'ath', 'ATR0733G179' => 'atr', 'ATR1159G004' => 'atr', 'Atru.chr3.537' => 'acertr', 'AUR62003182' => 'cqu', 'AUR62006523' => 'cqu', 'AUR62008002' => 'cqu', 'AUR62025011' => 'cqu', 'BcaB02g10164' => 'bca', 'BcaB03g12375' => 'bca', 'BcaB08g34828' => 'bca', 'BcaC01g00447' => 'bca', 'BcaC01g02859' => 'bca', 'BcaC02g10963' => 'bca', 'BcaC02g10964' => 'bca', 'BcaNung06145' => 'bca', 'BcaNung07141' => 'bca', 'BolC3t18190H' => 'bol', 'BolC3t20247H' => 'bol', 'BolC4t23782H' => 'bol', 'BolC7t46609H' => 'bol', 'BraA03t15508Z' => 'bra', 'BraA03t15509Z' => 'bra', 'BraA06t26247Z' => 'bra', 'BraA07t29611Z' => 'bra', 'BraA08t34192Z' => 'bra', 'C03p59290' => 'bna', 'C03p79950' => 'bna', 'C04p22860' => 'bna', 'C07p61870' => 'bna', 'CAN.G1001.13' => 'can', 'CAN.G1001.15' => 'can', 'CAN.G1001.16' => 'can', 'CAN.G1001.17' => 'can', 'CAN.G1001.19' => 'can', 'CAN.G1001.20' => 'can', 'CAN.G1001.21' => 'can', 'CAN.G1839.6' => 'can', 'CAN.G1839.7' => 'can', 'CAN.G1839.9' => 'can', 'CAN.G358.123' => 'can', 'CAN.G553.2' => 'can', 'CANSAT01G3243' => 'cansat', 'CANSAT54G1656' => 'cansat', 'CARHR109140' => 'chi', 'CARHR121490' => 'chi', 'CARHR245050' => 'chi', 'Carub.0003s3273' => 'cru', 'Carub.0004s0944' => 'cru', 'Carub.0007s0362' => 'cru', 'Ca_00392_v3' => 'car', 'Ca_01432_v3' => 'car', 'Ca_19243_v3' => 'car', 'CBR_g37795' => 'cbr', 'CBR_g48323' => 'cbr', 'CBR_g6738' => 'cbr', 'CBR_g6739' => 'cbr', 'Cc01_g11520' => 'ccan', 'Cc07_g09190' => 'ccan', 'Cc07_g09200' => 'ccan', 'CDE01G0620' => 'cde', 'CDE02G0356' => 'cde', 'CDE02G0946' => 'cde', 'CDE09G0795' => 'cde', 'Cfa004281' => 'cfa', 'Cfa011361' => 'cfa', 'Ciclev10027019m.g' => 'ccl', 'Ciclev10028266m.g' => 'ccl', 'CiPaw.01G034800' => 'cil', 'CiPaw.14G078000' => 'cil', 'ClCG01G019390' => 'cla', 'ClCG02G020970' => 'cla', 'COL.COLO4_05496' => 'col', 'COL.COLO4_06592' => 'col', 'COL.COLO4_08544' => 'col', 'COL.COLO4_22115' => 'col', 'COL.COLO4_24138' => 'col', 'COL.COLO4_25243' => 'col', 'COL.COLO4_25244' => 'col', 'Cpa.g.sc139.71' => 'cpa', 'Cpa.g.sc158.3' => 'cpa', 'Cpa.g.sc62.100' => 'cpa', 'CsaV3_6G021660' => 'csa', 'CsaV3_6G046100' => 'csa', 'CSS0016309' => 'camsi', 'CSS0019731' => 'camsi', 'CSS0045971' => 'camsi', 'DCAR_018830' => 'dca', 'DCAR_021445' => 'dca', 'Dinv04503' => 'din', 'Dinv26810' => 'din', 'Dinv26811' => 'din', 'Dinv32785' => 'din', 'Dinv32786' => 'din', 'Dinv39960' => 'din', 'Duzib168G1312' => 'dzi', 'Duzib187G1910' => 'dzi', 'ECA233G5833' => 'eca', 'ECA238G1560' => 'eca', 'ECA238G1711' => 'eca', 'ECA238G3485' => 'eca', 'ECA238G4653' => 'eca', 'ECA246G3405' => 'eca', 'EL10Ac6g14913' => 'bvu', 'EL10Ac9g22469' => 'bvu', 'Eucgr.B02472' => 'egr', 'Eucgr.J00948' => 'egr', 'FAN11G1933' => 'fan', 'FAN11G2704' => 'fan', 'FAN11G3753' => 'fan', 'FAN16G0706' => 'fan', 'FAN16G2054' => 'fan', 'FAN16G2791' => 'fan', 'FAN19G0942' => 'fan', 'FAN21G0076' => 'fan', 'FAN21G3350' => 'fan', 'FAN21G4030' => 'fan', 'FAN23G0891' => 'fan', 'FAN25G0620' => 'fan', 'FAN25G0759' => 'fan', 'FAN25G2815' => 'fan', 'FAN25G2967' => 'fan', 'FAN26G2185' => 'fan', 'FAN28G0335' => 'fan', 'FvH4_1g13730' => 'fve', 'FvH4_3g33170' => 'fve', 'FvH4_3g33180' => 'fve', 'FvH4_3g33190' => 'fve', 'FvH4_3g33240' => 'fve', 'Glyma.01G177000' => 'gma', 'Glyma.11G065800' => 'gma', 'Glyma.11G153587' => 'gma', 'Glyma.12G071600' => 'gma', 'Glyma.13G328400' => 'gma', 'Gohir.A03G161350' => 'ghi', 'Gohir.A07G116400' => 'ghi', 'Gohir.A11G186000' => 'ghi', 'Gohir.D07G120800' => 'ghi', 'Gohir.D11G192600' => 'ghi', 'Gorai.001G130200' => 'gra', 'Gorai.007G205600' => 'gra', 'GSVIVG01019005001' => 'vvi', 'GSVIVG01025139001' => 'vvi', 'HanXRQChr03g0071451' => 'han', 'HanXRQChr06g0170171' => 'han', 'HanXRQChr07g0190491' => 'han', 'HanXRQChr13g0404461' => 'han', 'Haze_15119' => 'cav', 'Haze_23907' => 'cav', 'Haze_23908' => 'cav', 'Hma1.2p1_0071F.1_g038040' => 'hma', 'Hma1.2p1_0568F.1_g180210' => 'hma', 'Hma1.2p1_0905F.1_g235320' => 'hma', 'Hma1.2p1_1228F.1_g268600' => 'hma', 'HPP92_014258' => 'vpl', 'HPP92_021307' => 'vpl', 'Lalb_Chr01g0004171' => 'lal', 'Lalb_Chr05g0212941' => 'lal', 'Lalb_Chr09g0322571' => 'lal', 'Lalb_Chr14g0374791' => 'lal', 'Lalb_Chr22g0350181' => 'lal', 'Lj2A1035T49' => 'lonja', 'Lj2C448T6' => 'lonja', 'Lj2g0000276' => 'lja', 'Lj3g0006595' => 'lja', 'Lj3g0013428' => 'lja', 'Lsat_1_v5_gn_2_76801' => 'lsa', 'Lsat_1_v5_gn_2_77901' => 'lsa', 'Lsat_1_v5_gn_3_78340' => 'lsa', 'Lsat_1_v5_gn_6_47021' => 'lsa', 'Manes.11G141600' => 'mes', 'Manes.12G089864' => 'mes', 'Manes.13G137200' => 'mes', 'MBI14_g19545_MAGBIO' => 'mbi', 'MBI16_g37295_MAGBIO' => 'mbi', 'MD02G1152000' => 'mdo', 'MD03G1105100' => 'mdo', 'MD11G1130400' => 'mdo', 'MD15G1266400' => 'mdo', 'Medtr2g093350' => 'mtr', 'Medtr2g093390' => 'mtr', 'Medtr2g093410' => 'mtr', 'Medtr2g093520' => 'mtr', 'Medtr2g093550' => 'mtr', 'Medtr2g093590' => 'mtr', 'Medtr2g093620' => 'mtr', 'Medtr2g093630' => 'mtr', 'Medtr4g060780' => 'mtr', 'Medtr5g019780' => 'mtr', 'MELO3C007813.2' => 'cme', 'MELO3C025750.2' => 'cme', 'Migut.D02185' => 'egut', 'Migut.H00185' => 'egut', 'Migut.N02619' => 'egut', 'MSTRG.18636' => 'ama', 'Nitab4.5_0000106g0050' => 'nta', 'Nitab4.5_0000196g0010' => 'nta', 'Nitab4.5_0000196g0020' => 'nta', 'Nitab4.5_0001279g0150' => 'nta', 'Nitab4.5_0001802g0100' => 'nta', 'Nitab4.5_0002128g0030' => 'nta', 'Nitab4.5_0002129g0100' => 'nta', 'Nn1g02542' => 'nnu', 'Nn1g02543' => 'nnu', 'Nn1g05077' => 'nnu', 'Nn2g10684' => 'nnu', 'Nn2g13012' => 'nnu', 'Nn4g24405' => 'nnu', 'Nn5g29533' => 'nnu', 'Oeu005907.1' => 'oeu', 'Oeu021563.1' => 'oeu', 'Oeu031890.1' => 'oeu', 'Oeu036289.1' => 'oeu', 'Oeu059105.2' => 'oeu', 'Os03g0197300' => 'osa', 'Os03g0336100' => 'osa', 'Peaxi162Scf00101g00910' => 'pax', 'Peaxi162Scf00205g00011' => 'pax', 'Peaxi162Scf00389g00093' => 'pax', 'Peaxi162Scf00427g00512' => 'pax', 'Peaxi162Scf00476g00220' => 'pax', 'Peaxi162Scf00476g00223' => 'pax', 'Peaxi162Scf00476g00315' => 'pax', 'Peaxi162Scf00476g00321' => 'pax', 'PGR102G3185' => 'pgr', 'PGR119G1372' => 'pgr', 'PGSC0003DMG400003374' => 'stu', 'PGSC0003DMG400007501' => 'stu', 'PGSC0003DMG400007502' => 'stu', 'PGSC0003DMG400012661' => 'stu', 'PGSC0003DMG400020917' => 'stu', 'PGSC0003DMG400027378' => 'stu', 'PGSC0003DMG401007500' => 'stu', 'PGSC0003DMG402007500' => 'stu', 'Phvul.002G027900' => 'pvu', 'Phvul.005G137200' => 'pvu', 'Phvul.011G072800' => 'pvu', 'Potri.001G259208' => 'ptr', 'Potri.007G029100' => 'ptr', 'Potri.009G054700' => 'ptr', 'Prupe.1G032200' => 'ppe', 'Prupe.6G095000' => 'ppe', 'Prupe.7G151000' => 'ppe', 'Psat0s137g0280' => 'psa', 'Psat2g161120' => 'psa', 'Psat5g277440' => 'psa', 'PSO063G6855' => 'pso', 'PSO170G3836' => 'pso', 'QL01p037284' => 'qlo', 'QL06p045400' => 'qlo', 'RcHm_v2.0_Chr2g0102141' => 'rch', 'RcHm_v2.0_Chr5g0060491' => 'rch', 'RcHm_v2.0_Chr5g0060501' => 'rch', 'RcHm_v2.0_Chr5g0060531' => 'rch', 'RcHm_v2.0_Chr5g0060591' => 'rch', 'Rhsim01G0219300' => 'rsi', 'Rhsim01G0219400' => 'rsi', 'Rhsim01G0219500' => 'rsi', 'Rhsim01G0219600' => 'rsi', 'Rhsim01G0219700' => 'rsi', 'Rhsim01G0219800' => 'rsi', 'Rhsim01G0219900' => 'rsi', 'Rhsim01G0220000' => 'rsi', 'Rhsim08G0112800' => 'rsi', 'Rhsim09G0035200' => 'rsi', 'Rhsim09G0035300' => 'rsi', 'Rhsim09G0035400' => 'rsi', 'Rhsim13G0092600' => 'rsi', 'Sabra05G0103400' => 'sbr', 'Sabra09G0040000' => 'sbr', 'SalBow5G5464' => 'sbo', 'Sc06g0010510' => 'sci', 'Sc16g0000950' => 'sci', 'Sed0004107' => 'sed', 'Sed0006496' => 'sed', 'SEGI_13794' => 'sgi', 'SEGI_19513' => 'sgi', 'SGA_v2.0_scaffold2G00910' => 'sas', 'SGA_v2.0_scaffold33G13385' => 'sas', 'SGA_v2.0_scaffold61G21168' => 'sas', 'SHI06059' => 'shi', 'SHI08678' => 'shi', 'SMO137G0028' => 'smo', 'SMO141G0312' => 'smo', 'SMO351G0425' => 'smo', 'SMO364G0856' => 'smo', 'Solyc02g085590.4' => 'sly', 'Solyc03g044210.4' => 'sly', 'Solyc06g075260.3' => 'sly', 'Solyc06g075270.4' => 'sly', 'Solyc06g075280.3' => 'sly', 'Solyc06g075290.4' => 'sly', 'Solyc06g075300.3' => 'sly', 'Solyc06g075320.3' => 'sly', 'Solyc11g072380.2' => 'sly', 'Sopen02g030260' => 'spe', 'Sopen03g008250' => 'spe', 'Sopen06g031650' => 'spe', 'Sopen06g031660' => 'spe', 'Sopen06g031670' => 'spe', 'Sopen06g031690' => 'spe', 'Sopen06g031700' => 'spe', 'Sopen06g031720' => 'spe', 'Sopen11g030030' => 'spe', 'Sp3g31990' => 'spa', 'Sp4g11320' => 'spa', 'Sp7g34360' => 'spa', 'TAR369G0446' => 'tar', 'TAR381G1082' => 'tar', 'TAR623G0167' => 'tar', 'TAR623G0459' => 'tar', 'THA.LOC104800613' => 'tha', 'THA.LOC104807543' => 'tha', 'THA.LOC104819798' => 'tha', 'Thecc.01G039500' => 'tca', 'Thecc.09G260000' => 'tca', 'Thhalv10017921m.g' => 'esa', 'Thhalv10024697m.g' => 'esa', 'TPR.G11484' => 'tpr', 'TPR.G11569' => 'tpr', 'TPR.G14921' => 'tpr', 'TPR.G18814' => 'tpr', 'TPR.G27035' => 'tpr', 'TWI31G0073' => 'twi', 'TWI53G1751' => 'twi', 'TWI79G1599' => 'twi', 'unitig_0.g1037' => 'ugi', 'unitig_52.g17593' => 'ugi', 'vmacro03174' => 'vma', 'vmacro14457' => 'vma', 'vmacro14458' => 'vma', 'vmacro14459' => 'vma', 'vmacro14460' => 'vma', 'vmacro14461' => 'vma', 'vmacro17861' => 'vma', 'VMungo1127G0357' => 'vmu', 'Zm00001eb016090' => 'zma', 'Zm00001eb401000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001788' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001788' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001788' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001788' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '365', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p64410' => 'bna', 'A03p64420' => 'bna', 'A06p33160' => 'bna', 'A07p19060' => 'bna', 'A08p22360' => 'bna', 'Aa31LG5G7720' => 'aar', 'Aa31LG6G13510' => 'aar', 'Aa31LG8G15510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.190' => 'aag', 'Actinidia07116' => 'ach', 'Actinidia19166' => 'ach', 'Actinidia24080' => 'ach', 'Ah.01g015020' => 'amhyb', 'Ah.03g139310' => 'amhyb', 'AL3G51880' => 'aly', 'AL4G22870' => 'aly', 'AL7G14310' => 'aly', 'Aqoxy4G03215' => 'aox', 'Aqoxy5G01682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3263BZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65BX45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW9F3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G27FXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0N14A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2EEE' => 'arhy', 'AT2G18540' => 'ath', 'AT2G28490' => 'ath', 'AT4G36700' => 'ath', 'ATR0733G179' => 'atr', 'ATR1159G004' => 'atr', 'Atru.chr3.537' => 'acertr', 'AUR62003182' => 'cqu', 'AUR62006523' => 'cqu', 'AUR62008002' => 'cqu', 'AUR62025011' => 'cqu', 'BcaB02g10164' => 'bca', 'BcaB03g12375' => 'bca', 'BcaB08g34828' => 'bca', 'BcaC01g00447' => 'bca', 'BcaC01g02859' => 'bca', 'BcaC02g10963' => 'bca', 'BcaC02g10964' => 'bca', 'BcaNung06145' => 'bca', 'BcaNung07141' => 'bca', 'BolC3t18190H' => 'bol', 'BolC3t20247H' => 'bol', 'BolC4t23782H' => 'bol', 'BolC7t46609H' => 'bol', 'BraA03t15508Z' => 'bra', 'BraA03t15509Z' => 'bra', 'BraA06t26247Z' => 'bra', 'BraA07t29611Z' => 'bra', 'BraA08t34192Z' => 'bra', 'C03p59290' => 'bna', 'C03p79950' => 'bna', 'C04p22860' => 'bna', 'C07p61870' => 'bna', 'CAN.G1001.13' => 'can', 'CAN.G1001.15' => 'can', 'CAN.G1001.16' => 'can', 'CAN.G1001.17' => 'can', 'CAN.G1001.19' => 'can', 'CAN.G1001.20' => 'can', 'CAN.G1001.21' => 'can', 'CAN.G1839.6' => 'can', 'CAN.G1839.7' => 'can', 'CAN.G1839.9' => 'can', 'CAN.G358.123' => 'can', 'CAN.G553.2' => 'can', 'CANSAT01G3243' => 'cansat', 'CANSAT54G1656' => 'cansat', 'CARHR109140' => 'chi', 'CARHR121490' => 'chi', 'CARHR245050' => 'chi', 'Carub.0003s3273' => 'cru', 'Carub.0004s0944' => 'cru', 'Carub.0007s0362' => 'cru', 'Ca_00392_v3' => 'car', 'Ca_01432_v3' => 'car', 'Ca_19243_v3' => 'car', 'CBR_g37795' => 'cbr', 'CBR_g48323' => 'cbr', 'CBR_g6738' => 'cbr', 'CBR_g6739' => 'cbr', 'Cc01_g11520' => 'ccan', 'Cc07_g09190' => 'ccan', 'Cc07_g09200' => 'ccan', 'CDE01G0620' => 'cde', 'CDE02G0356' => 'cde', 'CDE02G0946' => 'cde', 'CDE09G0795' => 'cde', 'Cfa004281' => 'cfa', 'Cfa011361' => 'cfa', 'Ciclev10027019m.g' => 'ccl', 'Ciclev10028266m.g' => 'ccl', 'CiPaw.01G034800' => 'cil', 'CiPaw.14G078000' => 'cil', 'ClCG01G019390' => 'cla', 'ClCG02G020970' => 'cla', 'COL.COLO4_05496' => 'col', 'COL.COLO4_06592' => 'col', 'COL.COLO4_08544' => 'col', 'COL.COLO4_22115' => 'col', 'COL.COLO4_24138' => 'col', 'COL.COLO4_25243' => 'col', 'COL.COLO4_25244' => 'col', 'Cpa.g.sc139.71' => 'cpa', 'Cpa.g.sc158.3' => 'cpa', 'Cpa.g.sc62.100' => 'cpa', 'CsaV3_6G021660' => 'csa', 'CsaV3_6G046100' => 'csa', 'CSS0016309' => 'camsi', 'CSS0019731' => 'camsi', 'CSS0045971' => 'camsi', 'DCAR_018830' => 'dca', 'DCAR_021445' => 'dca', 'Dinv04503' => 'din', 'Dinv26810' => 'din', 'Dinv26811' => 'din', 'Dinv32785' => 'din', 'Dinv32786' => 'din', 'Dinv39960' => 'din', 'Duzib168G1312' => 'dzi', 'Duzib187G1910' => 'dzi', 'ECA233G5833' => 'eca', 'ECA238G1560' => 'eca', 'ECA238G1711' => 'eca', 'ECA238G3485' => 'eca', 'ECA238G4653' => 'eca', 'ECA246G3405' => 'eca', 'EL10Ac6g14913' => 'bvu', 'EL10Ac9g22469' => 'bvu', 'Eucgr.B02472' => 'egr', 'Eucgr.J00948' => 'egr', 'FAN11G1933' => 'fan', 'FAN11G2704' => 'fan', 'FAN11G3753' => 'fan', 'FAN16G0706' => 'fan', 'FAN16G2054' => 'fan', 'FAN16G2791' => 'fan', 'FAN19G0942' => 'fan', 'FAN21G0076' => 'fan', 'FAN21G3350' => 'fan', 'FAN21G4030' => 'fan', 'FAN23G0891' => 'fan', 'FAN25G0620' => 'fan', 'FAN25G0759' => 'fan', 'FAN25G2815' => 'fan', 'FAN25G2967' => 'fan', 'FAN26G2185' => 'fan', 'FAN28G0335' => 'fan', 'FvH4_1g13730' => 'fve', 'FvH4_3g33170' => 'fve', 'FvH4_3g33180' => 'fve', 'FvH4_3g33190' => 'fve', 'FvH4_3g33240' => 'fve', 'Glyma.01G177000' => 'gma', 'Glyma.11G065800' => 'gma', 'Glyma.11G153587' => 'gma', 'Glyma.12G071600' => 'gma', 'Glyma.13G328400' => 'gma', 'Gohir.A03G161350' => 'ghi', 'Gohir.A07G116400' => 'ghi', 'Gohir.A11G186000' => 'ghi', 'Gohir.D07G120800' => 'ghi', 'Gohir.D11G192600' => 'ghi', 'Gorai.001G130200' => 'gra', 'Gorai.007G205600' => 'gra', 'GSVIVG01019005001' => 'vvi', 'GSVIVG01025139001' => 'vvi', 'HanXRQChr03g0071451' => 'han', 'HanXRQChr06g0170171' => 'han', 'HanXRQChr07g0190491' => 'han', 'HanXRQChr13g0404461' => 'han', 'Haze_15119' => 'cav', 'Haze_23907' => 'cav', 'Haze_23908' => 'cav', 'Hma1.2p1_0071F.1_g038040' => 'hma', 'Hma1.2p1_0568F.1_g180210' => 'hma', 'Hma1.2p1_0905F.1_g235320' => 'hma', 'Hma1.2p1_1228F.1_g268600' => 'hma', 'HPP92_014258' => 'vpl', 'HPP92_021307' => 'vpl', 'Lalb_Chr01g0004171' => 'lal', 'Lalb_Chr05g0212941' => 'lal', 'Lalb_Chr09g0322571' => 'lal', 'Lalb_Chr14g0374791' => 'lal', 'Lalb_Chr22g0350181' => 'lal', 'Lj2A1035T49' => 'lonja', 'Lj2C448T6' => 'lonja', 'Lj2g0000276' => 'lja', 'Lj3g0006595' => 'lja', 'Lj3g0013428' => 'lja', 'Lsat_1_v5_gn_2_76801' => 'lsa', 'Lsat_1_v5_gn_2_77901' => 'lsa', 'Lsat_1_v5_gn_3_78340' => 'lsa', 'Lsat_1_v5_gn_6_47021' => 'lsa', 'Manes.11G141600' => 'mes', 'Manes.12G089864' => 'mes', 'Manes.13G137200' => 'mes', 'MBI14_g19545_MAGBIO' => 'mbi', 'MBI16_g37295_MAGBIO' => 'mbi', 'MD02G1152000' => 'mdo', 'MD03G1105100' => 'mdo', 'MD11G1130400' => 'mdo', 'MD15G1266400' => 'mdo', 'Medtr2g093350' => 'mtr', 'Medtr2g093390' => 'mtr', 'Medtr2g093410' => 'mtr', 'Medtr2g093520' => 'mtr', 'Medtr2g093550' => 'mtr', 'Medtr2g093590' => 'mtr', 'Medtr2g093620' => 'mtr', 'Medtr2g093630' => 'mtr', 'Medtr4g060780' => 'mtr', 'Medtr5g019780' => 'mtr', 'MELO3C007813.2' => 'cme', 'MELO3C025750.2' => 'cme', 'Migut.D02185' => 'egut', 'Migut.H00185' => 'egut', 'Migut.N02619' => 'egut', 'MSTRG.18636' => 'ama', 'Nitab4.5_0000106g0050' => 'nta', 'Nitab4.5_0000196g0010' => 'nta', 'Nitab4.5_0000196g0020' => 'nta', 'Nitab4.5_0001279g0150' => 'nta', 'Nitab4.5_0001802g0100' => 'nta', 'Nitab4.5_0002128g0030' => 'nta', 'Nitab4.5_0002129g0100' => 'nta', 'Nn1g02542' => 'nnu', 'Nn1g02543' => 'nnu', 'Nn1g05077' => 'nnu', 'Nn2g10684' => 'nnu', 'Nn2g13012' => 'nnu', 'Nn4g24405' => 'nnu', 'Nn5g29533' => 'nnu', 'Oeu005907.1' => 'oeu', 'Oeu021563.1' => 'oeu', 'Oeu031890.1' => 'oeu', 'Oeu036289.1' => 'oeu', 'Oeu059105.2' => 'oeu', 'Os03g0197300' => 'osa', 'Os03g0336100' => 'osa', 'Peaxi162Scf00101g00910' => 'pax', 'Peaxi162Scf00205g00011' => 'pax', 'Peaxi162Scf00389g00093' => 'pax', 'Peaxi162Scf00427g00512' => 'pax', 'Peaxi162Scf00476g00220' => 'pax', 'Peaxi162Scf00476g00223' => 'pax', 'Peaxi162Scf00476g00315' => 'pax', 'Peaxi162Scf00476g00321' => 'pax', 'PGR102G3185' => 'pgr', 'PGR119G1372' => 'pgr', 'PGSC0003DMG400003374' => 'stu', 'PGSC0003DMG400007501' => 'stu', 'PGSC0003DMG400007502' => 'stu', 'PGSC0003DMG400012661' => 'stu', 'PGSC0003DMG400020917' => 'stu', 'PGSC0003DMG400027378' => 'stu', 'PGSC0003DMG401007500' => 'stu', 'PGSC0003DMG402007500' => 'stu', 'Phvul.002G027900' => 'pvu', 'Phvul.005G137200' => 'pvu', 'Phvul.011G072800' => 'pvu', 'Potri.001G259208' => 'ptr', 'Potri.007G029100' => 'ptr', 'Potri.009G054700' => 'ptr', 'Prupe.1G032200' => 'ppe', 'Prupe.6G095000' => 'ppe', 'Prupe.7G151000' => 'ppe', 'Psat0s137g0280' => 'psa', 'Psat2g161120' => 'psa', 'Psat5g277440' => 'psa', 'PSO063G6855' => 'pso', 'PSO170G3836' => 'pso', 'QL01p037284' => 'qlo', 'QL06p045400' => 'qlo', 'RcHm_v2.0_Chr2g0102141' => 'rch', 'RcHm_v2.0_Chr5g0060491' => 'rch', 'RcHm_v2.0_Chr5g0060501' => 'rch', 'RcHm_v2.0_Chr5g0060531' => 'rch', 'RcHm_v2.0_Chr5g0060591' => 'rch', 'Rhsim01G0219300' => 'rsi', 'Rhsim01G0219400' => 'rsi', 'Rhsim01G0219500' => 'rsi', 'Rhsim01G0219600' => 'rsi', 'Rhsim01G0219700' => 'rsi', 'Rhsim01G0219800' => 'rsi', 'Rhsim01G0219900' => 'rsi', 'Rhsim01G0220000' => 'rsi', 'Rhsim08G0112800' => 'rsi', 'Rhsim09G0035200' => 'rsi', 'Rhsim09G0035300' => 'rsi', 'Rhsim09G0035400' => 'rsi', 'Rhsim13G0092600' => 'rsi', 'Sabra05G0103400' => 'sbr', 'Sabra09G0040000' => 'sbr', 'SalBow5G5464' => 'sbo', 'Sc06g0010510' => 'sci', 'Sc16g0000950' => 'sci', 'Sed0004107' => 'sed', 'Sed0006496' => 'sed', 'SEGI_13794' => 'sgi', 'SEGI_19513' => 'sgi', 'SGA_v2.0_scaffold2G00910' => 'sas', 'SGA_v2.0_scaffold33G13385' => 'sas', 'SGA_v2.0_scaffold61G21168' => 'sas', 'SHI06059' => 'shi', 'SHI08678' => 'shi', 'SMO137G0028' => 'smo', 'SMO141G0312' => 'smo', 'SMO351G0425' => 'smo', 'SMO364G0856' => 'smo', 'Solyc02g085590.4' => 'sly', 'Solyc03g044210.4' => 'sly', 'Solyc06g075260.3' => 'sly', 'Solyc06g075270.4' => 'sly', 'Solyc06g075280.3' => 'sly', 'Solyc06g075290.4' => 'sly', 'Solyc06g075300.3' => 'sly', 'Solyc06g075320.3' => 'sly', 'Solyc11g072380.2' => 'sly', 'Sopen02g030260' => 'spe', 'Sopen03g008250' => 'spe', 'Sopen06g031650' => 'spe', 'Sopen06g031660' => 'spe', 'Sopen06g031670' => 'spe', 'Sopen06g031690' => 'spe', 'Sopen06g031700' => 'spe', 'Sopen06g031720' => 'spe', 'Sopen11g030030' => 'spe', 'Sp3g31990' => 'spa', 'Sp4g11320' => 'spa', 'Sp7g34360' => 'spa', 'TAR369G0446' => 'tar', 'TAR381G1082' => 'tar', 'TAR623G0167' => 'tar', 'TAR623G0459' => 'tar', 'THA.LOC104800613' => 'tha', 'THA.LOC104807543' => 'tha', 'THA.LOC104819798' => 'tha', 'Thecc.01G039500' => 'tca', 'Thecc.09G260000' => 'tca', 'Thhalv10017921m.g' => 'esa', 'Thhalv10024697m.g' => 'esa', 'TPR.G11484' => 'tpr', 'TPR.G11569' => 'tpr', 'TPR.G14921' => 'tpr', 'TPR.G18814' => 'tpr', 'TPR.G27035' => 'tpr', 'TWI31G0073' => 'twi', 'TWI53G1751' => 'twi', 'TWI79G1599' => 'twi', 'unitig_0.g1037' => 'ugi', 'unitig_52.g17593' => 'ugi', 'vmacro03174' => 'vma', 'vmacro14457' => 'vma', 'vmacro14458' => 'vma', 'vmacro14459' => 'vma', 'vmacro14460' => 'vma', 'vmacro14461' => 'vma', 'vmacro17861' => 'vma', 'VMungo1127G0357' => 'vmu', 'Zm00001eb016090' => 'zma', 'Zm00001eb401000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001788', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001788' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '365', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001788' ) ), 'genes' => array( 'A03p64410' => 'bna', 'A03p64420' => 'bna', 'A06p33160' => 'bna', 'A07p19060' => 'bna', 'A08p22360' => 'bna', 'Aa31LG5G7720' => 'aar', 'Aa31LG6G13510' => 'aar', 'Aa31LG8G15510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.190' => 'aag', 'Actinidia07116' => 'ach', 'Actinidia19166' => 'ach', 'Actinidia24080' => 'ach', 'Ah.01g015020' => 'amhyb', 'Ah.03g139310' => 'amhyb', 'AL3G51880' => 'aly', 'AL4G22870' => 'aly', 'AL7G14310' => 'aly', 'Aqoxy4G03215' => 'aox', 'Aqoxy5G01682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3263BZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65BX45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW9F3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G27FXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0N14A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2EEE' => 'arhy', 'AT2G18540' => 'ath', 'AT2G28490' => 'ath', 'AT4G36700' => 'ath', 'ATR0733G179' => 'atr', 'ATR1159G004' => 'atr', 'Atru.chr3.537' => 'acertr', 'AUR62003182' => 'cqu', 'AUR62006523' => 'cqu', 'AUR62008002' => 'cqu', 'AUR62025011' => 'cqu', 'BcaB02g10164' => 'bca', 'BcaB03g12375' => 'bca', 'BcaB08g34828' => 'bca', 'BcaC01g00447' => 'bca', 'BcaC01g02859' => 'bca', 'BcaC02g10963' => 'bca', 'BcaC02g10964' => 'bca', 'BcaNung06145' => 'bca', 'BcaNung07141' => 'bca', 'BolC3t18190H' => 'bol', 'BolC3t20247H' => 'bol', 'BolC4t23782H' => 'bol', 'BolC7t46609H' => 'bol', 'BraA03t15508Z' => 'bra', 'BraA03t15509Z' => 'bra', 'BraA06t26247Z' => 'bra', 'BraA07t29611Z' => 'bra', 'BraA08t34192Z' => 'bra', 'C03p59290' => 'bna', 'C03p79950' => 'bna', 'C04p22860' => 'bna', 'C07p61870' => 'bna', 'CAN.G1001.13' => 'can', 'CAN.G1001.15' => 'can', 'CAN.G1001.16' => 'can', 'CAN.G1001.17' => 'can', 'CAN.G1001.19' => 'can', 'CAN.G1001.20' => 'can', 'CAN.G1001.21' => 'can', 'CAN.G1839.6' => 'can', 'CAN.G1839.7' => 'can', 'CAN.G1839.9' => 'can', 'CAN.G358.123' => 'can', 'CAN.G553.2' => 'can', 'CANSAT01G3243' => 'cansat', 'CANSAT54G1656' => 'cansat', 'CARHR109140' => 'chi', 'CARHR121490' => 'chi', 'CARHR245050' => 'chi', 'Carub.0003s3273' => 'cru', 'Carub.0004s0944' => 'cru', 'Carub.0007s0362' => 'cru', 'Ca_00392_v3' => 'car', 'Ca_01432_v3' => 'car', 'Ca_19243_v3' => 'car', 'CBR_g37795' => 'cbr', 'CBR_g48323' => 'cbr', 'CBR_g6738' => 'cbr', 'CBR_g6739' => 'cbr', 'Cc01_g11520' => 'ccan', 'Cc07_g09190' => 'ccan', 'Cc07_g09200' => 'ccan', 'CDE01G0620' => 'cde', 'CDE02G0356' => 'cde', 'CDE02G0946' => 'cde', 'CDE09G0795' => 'cde', 'Cfa004281' => 'cfa', 'Cfa011361' => 'cfa', 'Ciclev10027019m.g' => 'ccl', 'Ciclev10028266m.g' => 'ccl', 'CiPaw.01G034800' => 'cil', 'CiPaw.14G078000' => 'cil', 'ClCG01G019390' => 'cla', 'ClCG02G020970' => 'cla', 'COL.COLO4_05496' => 'col', 'COL.COLO4_06592' => 'col', 'COL.COLO4_08544' => 'col', 'COL.COLO4_22115' => 'col', 'COL.COLO4_24138' => 'col', 'COL.COLO4_25243' => 'col', 'COL.COLO4_25244' => 'col', 'Cpa.g.sc139.71' => 'cpa', 'Cpa.g.sc158.3' => 'cpa', 'Cpa.g.sc62.100' => 'cpa', 'CsaV3_6G021660' => 'csa', 'CsaV3_6G046100' => 'csa', 'CSS0016309' => 'camsi', 'CSS0019731' => 'camsi', 'CSS0045971' => 'camsi', 'DCAR_018830' => 'dca', 'DCAR_021445' => 'dca', 'Dinv04503' => 'din', 'Dinv26810' => 'din', 'Dinv26811' => 'din', 'Dinv32785' => 'din', 'Dinv32786' => 'din', 'Dinv39960' => 'din', 'Duzib168G1312' => 'dzi', 'Duzib187G1910' => 'dzi', 'ECA233G5833' => 'eca', 'ECA238G1560' => 'eca', 'ECA238G1711' => 'eca', 'ECA238G3485' => 'eca', 'ECA238G4653' => 'eca', 'ECA246G3405' => 'eca', 'EL10Ac6g14913' => 'bvu', 'EL10Ac9g22469' => 'bvu', 'Eucgr.B02472' => 'egr', 'Eucgr.J00948' => 'egr', 'FAN11G1933' => 'fan', 'FAN11G2704' => 'fan', 'FAN11G3753' => 'fan', 'FAN16G0706' => 'fan', 'FAN16G2054' => 'fan', 'FAN16G2791' => 'fan', 'FAN19G0942' => 'fan', 'FAN21G0076' => 'fan', 'FAN21G3350' => 'fan', 'FAN21G4030' => 'fan', 'FAN23G0891' => 'fan', 'FAN25G0620' => 'fan', 'FAN25G0759' => 'fan', 'FAN25G2815' => 'fan', 'FAN25G2967' => 'fan', 'FAN26G2185' => 'fan', 'FAN28G0335' => 'fan', 'FvH4_1g13730' => 'fve', 'FvH4_3g33170' => 'fve', 'FvH4_3g33180' => 'fve', 'FvH4_3g33190' => 'fve', 'FvH4_3g33240' => 'fve', 'Glyma.01G177000' => 'gma', 'Glyma.11G065800' => 'gma', 'Glyma.11G153587' => 'gma', 'Glyma.12G071600' => 'gma', 'Glyma.13G328400' => 'gma', 'Gohir.A03G161350' => 'ghi', 'Gohir.A07G116400' => 'ghi', 'Gohir.A11G186000' => 'ghi', 'Gohir.D07G120800' => 'ghi', 'Gohir.D11G192600' => 'ghi', 'Gorai.001G130200' => 'gra', 'Gorai.007G205600' => 'gra', 'GSVIVG01019005001' => 'vvi', 'GSVIVG01025139001' => 'vvi', 'HanXRQChr03g0071451' => 'han', 'HanXRQChr06g0170171' => 'han', 'HanXRQChr07g0190491' => 'han', 'HanXRQChr13g0404461' => 'han', 'Haze_15119' => 'cav', 'Haze_23907' => 'cav', 'Haze_23908' => 'cav', 'Hma1.2p1_0071F.1_g038040' => 'hma', 'Hma1.2p1_0568F.1_g180210' => 'hma', 'Hma1.2p1_0905F.1_g235320' => 'hma', 'Hma1.2p1_1228F.1_g268600' => 'hma', 'HPP92_014258' => 'vpl', 'HPP92_021307' => 'vpl', 'Lalb_Chr01g0004171' => 'lal', 'Lalb_Chr05g0212941' => 'lal', 'Lalb_Chr09g0322571' => 'lal', 'Lalb_Chr14g0374791' => 'lal', 'Lalb_Chr22g0350181' => 'lal', 'Lj2A1035T49' => 'lonja', 'Lj2C448T6' => 'lonja', 'Lj2g0000276' => 'lja', 'Lj3g0006595' => 'lja', 'Lj3g0013428' => 'lja', 'Lsat_1_v5_gn_2_76801' => 'lsa', 'Lsat_1_v5_gn_2_77901' => 'lsa', 'Lsat_1_v5_gn_3_78340' => 'lsa', 'Lsat_1_v5_gn_6_47021' => 'lsa', 'Manes.11G141600' => 'mes', 'Manes.12G089864' => 'mes', 'Manes.13G137200' => 'mes', 'MBI14_g19545_MAGBIO' => 'mbi', 'MBI16_g37295_MAGBIO' => 'mbi', 'MD02G1152000' => 'mdo', 'MD03G1105100' => 'mdo', 'MD11G1130400' => 'mdo', 'MD15G1266400' => 'mdo', 'Medtr2g093350' => 'mtr', 'Medtr2g093390' => 'mtr', 'Medtr2g093410' => 'mtr', 'Medtr2g093520' => 'mtr', 'Medtr2g093550' => 'mtr', 'Medtr2g093590' => 'mtr', 'Medtr2g093620' => 'mtr', 'Medtr2g093630' => 'mtr', 'Medtr4g060780' => 'mtr', 'Medtr5g019780' => 'mtr', 'MELO3C007813.2' => 'cme', 'MELO3C025750.2' => 'cme', 'Migut.D02185' => 'egut', 'Migut.H00185' => 'egut', 'Migut.N02619' => 'egut', 'MSTRG.18636' => 'ama', 'Nitab4.5_0000106g0050' => 'nta', 'Nitab4.5_0000196g0010' => 'nta', 'Nitab4.5_0000196g0020' => 'nta', 'Nitab4.5_0001279g0150' => 'nta', 'Nitab4.5_0001802g0100' => 'nta', 'Nitab4.5_0002128g0030' => 'nta', 'Nitab4.5_0002129g0100' => 'nta', 'Nn1g02542' => 'nnu', 'Nn1g02543' => 'nnu', 'Nn1g05077' => 'nnu', 'Nn2g10684' => 'nnu', 'Nn2g13012' => 'nnu', 'Nn4g24405' => 'nnu', 'Nn5g29533' => 'nnu', 'Oeu005907.1' => 'oeu', 'Oeu021563.1' => 'oeu', 'Oeu031890.1' => 'oeu', 'Oeu036289.1' => 'oeu', 'Oeu059105.2' => 'oeu', 'Os03g0197300' => 'osa', 'Os03g0336100' => 'osa', 'Peaxi162Scf00101g00910' => 'pax', 'Peaxi162Scf00205g00011' => 'pax', 'Peaxi162Scf00389g00093' => 'pax', 'Peaxi162Scf00427g00512' => 'pax', 'Peaxi162Scf00476g00220' => 'pax', 'Peaxi162Scf00476g00223' => 'pax', 'Peaxi162Scf00476g00315' => 'pax', 'Peaxi162Scf00476g00321' => 'pax', 'PGR102G3185' => 'pgr', 'PGR119G1372' => 'pgr', 'PGSC0003DMG400003374' => 'stu', 'PGSC0003DMG400007501' => 'stu', 'PGSC0003DMG400007502' => 'stu', 'PGSC0003DMG400012661' => 'stu', 'PGSC0003DMG400020917' => 'stu', 'PGSC0003DMG400027378' => 'stu', 'PGSC0003DMG401007500' => 'stu', 'PGSC0003DMG402007500' => 'stu', 'Phvul.002G027900' => 'pvu', 'Phvul.005G137200' => 'pvu', 'Phvul.011G072800' => 'pvu', 'Potri.001G259208' => 'ptr', 'Potri.007G029100' => 'ptr', 'Potri.009G054700' => 'ptr', 'Prupe.1G032200' => 'ppe', 'Prupe.6G095000' => 'ppe', 'Prupe.7G151000' => 'ppe', 'Psat0s137g0280' => 'psa', 'Psat2g161120' => 'psa', 'Psat5g277440' => 'psa', 'PSO063G6855' => 'pso', 'PSO170G3836' => 'pso', 'QL01p037284' => 'qlo', 'QL06p045400' => 'qlo', 'RcHm_v2.0_Chr2g0102141' => 'rch', 'RcHm_v2.0_Chr5g0060491' => 'rch', 'RcHm_v2.0_Chr5g0060501' => 'rch', 'RcHm_v2.0_Chr5g0060531' => 'rch', 'RcHm_v2.0_Chr5g0060591' => 'rch', 'Rhsim01G0219300' => 'rsi', 'Rhsim01G0219400' => 'rsi', 'Rhsim01G0219500' => 'rsi', 'Rhsim01G0219600' => 'rsi', 'Rhsim01G0219700' => 'rsi', 'Rhsim01G0219800' => 'rsi', 'Rhsim01G0219900' => 'rsi', 'Rhsim01G0220000' => 'rsi', 'Rhsim08G0112800' => 'rsi', 'Rhsim09G0035200' => 'rsi', 'Rhsim09G0035300' => 'rsi', 'Rhsim09G0035400' => 'rsi', 'Rhsim13G0092600' => 'rsi', 'Sabra05G0103400' => 'sbr', 'Sabra09G0040000' => 'sbr', 'SalBow5G5464' => 'sbo', 'Sc06g0010510' => 'sci', 'Sc16g0000950' => 'sci', 'Sed0004107' => 'sed', 'Sed0006496' => 'sed', 'SEGI_13794' => 'sgi', 'SEGI_19513' => 'sgi', 'SGA_v2.0_scaffold2G00910' => 'sas', 'SGA_v2.0_scaffold33G13385' => 'sas', 'SGA_v2.0_scaffold61G21168' => 'sas', 'SHI06059' => 'shi', 'SHI08678' => 'shi', 'SMO137G0028' => 'smo', 'SMO141G0312' => 'smo', 'SMO351G0425' => 'smo', 'SMO364G0856' => 'smo', 'Solyc02g085590.4' => 'sly', 'Solyc03g044210.4' => 'sly', 'Solyc06g075260.3' => 'sly', 'Solyc06g075270.4' => 'sly', 'Solyc06g075280.3' => 'sly', 'Solyc06g075290.4' => 'sly', 'Solyc06g075300.3' => 'sly', 'Solyc06g075320.3' => 'sly', 'Solyc11g072380.2' => 'sly', 'Sopen02g030260' => 'spe', 'Sopen03g008250' => 'spe', 'Sopen06g031650' => 'spe', 'Sopen06g031660' => 'spe', 'Sopen06g031670' => 'spe', 'Sopen06g031690' => 'spe', 'Sopen06g031700' => 'spe', 'Sopen06g031720' => 'spe', 'Sopen11g030030' => 'spe', 'Sp3g31990' => 'spa', 'Sp4g11320' => 'spa', 'Sp7g34360' => 'spa', 'TAR369G0446' => 'tar', 'TAR381G1082' => 'tar', 'TAR623G0167' => 'tar', 'TAR623G0459' => 'tar', 'THA.LOC104800613' => 'tha', 'THA.LOC104807543' => 'tha', 'THA.LOC104819798' => 'tha', 'Thecc.01G039500' => 'tca', 'Thecc.09G260000' => 'tca', 'Thhalv10017921m.g' => 'esa', 'Thhalv10024697m.g' => 'esa', 'TPR.G11484' => 'tpr', 'TPR.G11569' => 'tpr', 'TPR.G14921' => 'tpr', 'TPR.G18814' => 'tpr', 'TPR.G27035' => 'tpr', 'TWI31G0073' => 'twi', 'TWI53G1751' => 'twi', 'TWI79G1599' => 'twi', 'unitig_0.g1037' => 'ugi', 'unitig_52.g17593' => 'ugi', 'vmacro03174' => 'vma', 'vmacro14457' => 'vma', 'vmacro14458' => 'vma', 'vmacro14459' => 'vma', 'vmacro14460' => 'vma', 'vmacro14461' => 'vma', 'vmacro17861' => 'vma', 'VMungo1127G0357' => 'vmu', 'Zm00001eb016090' => 'zma', 'Zm00001eb401000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001788' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001788' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001788' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001788' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '365', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p64410' => 'bna', 'A03p64420' => 'bna', 'A06p33160' => 'bna', 'A07p19060' => 'bna', 'A08p22360' => 'bna', 'Aa31LG5G7720' => 'aar', 'Aa31LG6G13510' => 'aar', 'Aa31LG8G15510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.190' => 'aag', 'Actinidia07116' => 'ach', 'Actinidia19166' => 'ach', 'Actinidia24080' => 'ach', 'Ah.01g015020' => 'amhyb', 'Ah.03g139310' => 'amhyb', 'AL3G51880' => 'aly', 'AL4G22870' => 'aly', 'AL7G14310' => 'aly', 'Aqoxy4G03215' => 'aox', 'Aqoxy5G01682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3263BZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65BX45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW9F3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G27FXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0N14A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2EEE' => 'arhy', 'AT2G18540' => 'ath', 'AT2G28490' => 'ath', 'AT4G36700' => 'ath', 'ATR0733G179' => 'atr', 'ATR1159G004' => 'atr', 'Atru.chr3.537' => 'acertr', 'AUR62003182' => 'cqu', 'AUR62006523' => 'cqu', 'AUR62008002' => 'cqu', 'AUR62025011' => 'cqu', 'BcaB02g10164' => 'bca', 'BcaB03g12375' => 'bca', 'BcaB08g34828' => 'bca', 'BcaC01g00447' => 'bca', 'BcaC01g02859' => 'bca', 'BcaC02g10963' => 'bca', 'BcaC02g10964' => 'bca', 'BcaNung06145' => 'bca', 'BcaNung07141' => 'bca', 'BolC3t18190H' => 'bol', 'BolC3t20247H' => 'bol', 'BolC4t23782H' => 'bol', 'BolC7t46609H' => 'bol', 'BraA03t15508Z' => 'bra', 'BraA03t15509Z' => 'bra', 'BraA06t26247Z' => 'bra', 'BraA07t29611Z' => 'bra', 'BraA08t34192Z' => 'bra', 'C03p59290' => 'bna', 'C03p79950' => 'bna', 'C04p22860' => 'bna', 'C07p61870' => 'bna', 'CAN.G1001.13' => 'can', 'CAN.G1001.15' => 'can', 'CAN.G1001.16' => 'can', 'CAN.G1001.17' => 'can', 'CAN.G1001.19' => 'can', 'CAN.G1001.20' => 'can', 'CAN.G1001.21' => 'can', 'CAN.G1839.6' => 'can', 'CAN.G1839.7' => 'can', 'CAN.G1839.9' => 'can', 'CAN.G358.123' => 'can', 'CAN.G553.2' => 'can', 'CANSAT01G3243' => 'cansat', 'CANSAT54G1656' => 'cansat', 'CARHR109140' => 'chi', 'CARHR121490' => 'chi', 'CARHR245050' => 'chi', 'Carub.0003s3273' => 'cru', 'Carub.0004s0944' => 'cru', 'Carub.0007s0362' => 'cru', 'Ca_00392_v3' => 'car', 'Ca_01432_v3' => 'car', 'Ca_19243_v3' => 'car', 'CBR_g37795' => 'cbr', 'CBR_g48323' => 'cbr', 'CBR_g6738' => 'cbr', 'CBR_g6739' => 'cbr', 'Cc01_g11520' => 'ccan', 'Cc07_g09190' => 'ccan', 'Cc07_g09200' => 'ccan', 'CDE01G0620' => 'cde', 'CDE02G0356' => 'cde', 'CDE02G0946' => 'cde', 'CDE09G0795' => 'cde', 'Cfa004281' => 'cfa', 'Cfa011361' => 'cfa', 'Ciclev10027019m.g' => 'ccl', 'Ciclev10028266m.g' => 'ccl', 'CiPaw.01G034800' => 'cil', 'CiPaw.14G078000' => 'cil', 'ClCG01G019390' => 'cla', 'ClCG02G020970' => 'cla', 'COL.COLO4_05496' => 'col', 'COL.COLO4_06592' => 'col', 'COL.COLO4_08544' => 'col', 'COL.COLO4_22115' => 'col', 'COL.COLO4_24138' => 'col', 'COL.COLO4_25243' => 'col', 'COL.COLO4_25244' => 'col', 'Cpa.g.sc139.71' => 'cpa', 'Cpa.g.sc158.3' => 'cpa', 'Cpa.g.sc62.100' => 'cpa', 'CsaV3_6G021660' => 'csa', 'CsaV3_6G046100' => 'csa', 'CSS0016309' => 'camsi', 'CSS0019731' => 'camsi', 'CSS0045971' => 'camsi', 'DCAR_018830' => 'dca', 'DCAR_021445' => 'dca', 'Dinv04503' => 'din', 'Dinv26810' => 'din', 'Dinv26811' => 'din', 'Dinv32785' => 'din', 'Dinv32786' => 'din', 'Dinv39960' => 'din', 'Duzib168G1312' => 'dzi', 'Duzib187G1910' => 'dzi', 'ECA233G5833' => 'eca', 'ECA238G1560' => 'eca', 'ECA238G1711' => 'eca', 'ECA238G3485' => 'eca', 'ECA238G4653' => 'eca', 'ECA246G3405' => 'eca', 'EL10Ac6g14913' => 'bvu', 'EL10Ac9g22469' => 'bvu', 'Eucgr.B02472' => 'egr', 'Eucgr.J00948' => 'egr', 'FAN11G1933' => 'fan', 'FAN11G2704' => 'fan', 'FAN11G3753' => 'fan', 'FAN16G0706' => 'fan', 'FAN16G2054' => 'fan', 'FAN16G2791' => 'fan', 'FAN19G0942' => 'fan', 'FAN21G0076' => 'fan', 'FAN21G3350' => 'fan', 'FAN21G4030' => 'fan', 'FAN23G0891' => 'fan', 'FAN25G0620' => 'fan', 'FAN25G0759' => 'fan', 'FAN25G2815' => 'fan', 'FAN25G2967' => 'fan', 'FAN26G2185' => 'fan', 'FAN28G0335' => 'fan', 'FvH4_1g13730' => 'fve', 'FvH4_3g33170' => 'fve', 'FvH4_3g33180' => 'fve', 'FvH4_3g33190' => 'fve', 'FvH4_3g33240' => 'fve', 'Glyma.01G177000' => 'gma', 'Glyma.11G065800' => 'gma', 'Glyma.11G153587' => 'gma', 'Glyma.12G071600' => 'gma', 'Glyma.13G328400' => 'gma', 'Gohir.A03G161350' => 'ghi', 'Gohir.A07G116400' => 'ghi', 'Gohir.A11G186000' => 'ghi', 'Gohir.D07G120800' => 'ghi', 'Gohir.D11G192600' => 'ghi', 'Gorai.001G130200' => 'gra', 'Gorai.007G205600' => 'gra', 'GSVIVG01019005001' => 'vvi', 'GSVIVG01025139001' => 'vvi', 'HanXRQChr03g0071451' => 'han', 'HanXRQChr06g0170171' => 'han', 'HanXRQChr07g0190491' => 'han', 'HanXRQChr13g0404461' => 'han', 'Haze_15119' => 'cav', 'Haze_23907' => 'cav', 'Haze_23908' => 'cav', 'Hma1.2p1_0071F.1_g038040' => 'hma', 'Hma1.2p1_0568F.1_g180210' => 'hma', 'Hma1.2p1_0905F.1_g235320' => 'hma', 'Hma1.2p1_1228F.1_g268600' => 'hma', 'HPP92_014258' => 'vpl', 'HPP92_021307' => 'vpl', 'Lalb_Chr01g0004171' => 'lal', 'Lalb_Chr05g0212941' => 'lal', 'Lalb_Chr09g0322571' => 'lal', 'Lalb_Chr14g0374791' => 'lal', 'Lalb_Chr22g0350181' => 'lal', 'Lj2A1035T49' => 'lonja', 'Lj2C448T6' => 'lonja', 'Lj2g0000276' => 'lja', 'Lj3g0006595' => 'lja', 'Lj3g0013428' => 'lja', 'Lsat_1_v5_gn_2_76801' => 'lsa', 'Lsat_1_v5_gn_2_77901' => 'lsa', 'Lsat_1_v5_gn_3_78340' => 'lsa', 'Lsat_1_v5_gn_6_47021' => 'lsa', 'Manes.11G141600' => 'mes', 'Manes.12G089864' => 'mes', 'Manes.13G137200' => 'mes', 'MBI14_g19545_MAGBIO' => 'mbi', 'MBI16_g37295_MAGBIO' => 'mbi', 'MD02G1152000' => 'mdo', 'MD03G1105100' => 'mdo', 'MD11G1130400' => 'mdo', 'MD15G1266400' => 'mdo', 'Medtr2g093350' => 'mtr', 'Medtr2g093390' => 'mtr', 'Medtr2g093410' => 'mtr', 'Medtr2g093520' => 'mtr', 'Medtr2g093550' => 'mtr', 'Medtr2g093590' => 'mtr', 'Medtr2g093620' => 'mtr', 'Medtr2g093630' => 'mtr', 'Medtr4g060780' => 'mtr', 'Medtr5g019780' => 'mtr', 'MELO3C007813.2' => 'cme', 'MELO3C025750.2' => 'cme', 'Migut.D02185' => 'egut', 'Migut.H00185' => 'egut', 'Migut.N02619' => 'egut', 'MSTRG.18636' => 'ama', 'Nitab4.5_0000106g0050' => 'nta', 'Nitab4.5_0000196g0010' => 'nta', 'Nitab4.5_0000196g0020' => 'nta', 'Nitab4.5_0001279g0150' => 'nta', 'Nitab4.5_0001802g0100' => 'nta', 'Nitab4.5_0002128g0030' => 'nta', 'Nitab4.5_0002129g0100' => 'nta', 'Nn1g02542' => 'nnu', 'Nn1g02543' => 'nnu', 'Nn1g05077' => 'nnu', 'Nn2g10684' => 'nnu', 'Nn2g13012' => 'nnu', 'Nn4g24405' => 'nnu', 'Nn5g29533' => 'nnu', 'Oeu005907.1' => 'oeu', 'Oeu021563.1' => 'oeu', 'Oeu031890.1' => 'oeu', 'Oeu036289.1' => 'oeu', 'Oeu059105.2' => 'oeu', 'Os03g0197300' => 'osa', 'Os03g0336100' => 'osa', 'Peaxi162Scf00101g00910' => 'pax', 'Peaxi162Scf00205g00011' => 'pax', 'Peaxi162Scf00389g00093' => 'pax', 'Peaxi162Scf00427g00512' => 'pax', 'Peaxi162Scf00476g00220' => 'pax', 'Peaxi162Scf00476g00223' => 'pax', 'Peaxi162Scf00476g00315' => 'pax', 'Peaxi162Scf00476g00321' => 'pax', 'PGR102G3185' => 'pgr', 'PGR119G1372' => 'pgr', 'PGSC0003DMG400003374' => 'stu', 'PGSC0003DMG400007501' => 'stu', 'PGSC0003DMG400007502' => 'stu', 'PGSC0003DMG400012661' => 'stu', 'PGSC0003DMG400020917' => 'stu', 'PGSC0003DMG400027378' => 'stu', 'PGSC0003DMG401007500' => 'stu', 'PGSC0003DMG402007500' => 'stu', 'Phvul.002G027900' => 'pvu', 'Phvul.005G137200' => 'pvu', 'Phvul.011G072800' => 'pvu', 'Potri.001G259208' => 'ptr', 'Potri.007G029100' => 'ptr', 'Potri.009G054700' => 'ptr', 'Prupe.1G032200' => 'ppe', 'Prupe.6G095000' => 'ppe', 'Prupe.7G151000' => 'ppe', 'Psat0s137g0280' => 'psa', 'Psat2g161120' => 'psa', 'Psat5g277440' => 'psa', 'PSO063G6855' => 'pso', 'PSO170G3836' => 'pso', 'QL01p037284' => 'qlo', 'QL06p045400' => 'qlo', 'RcHm_v2.0_Chr2g0102141' => 'rch', 'RcHm_v2.0_Chr5g0060491' => 'rch', 'RcHm_v2.0_Chr5g0060501' => 'rch', 'RcHm_v2.0_Chr5g0060531' => 'rch', 'RcHm_v2.0_Chr5g0060591' => 'rch', 'Rhsim01G0219300' => 'rsi', 'Rhsim01G0219400' => 'rsi', 'Rhsim01G0219500' => 'rsi', 'Rhsim01G0219600' => 'rsi', 'Rhsim01G0219700' => 'rsi', 'Rhsim01G0219800' => 'rsi', 'Rhsim01G0219900' => 'rsi', 'Rhsim01G0220000' => 'rsi', 'Rhsim08G0112800' => 'rsi', 'Rhsim09G0035200' => 'rsi', 'Rhsim09G0035300' => 'rsi', 'Rhsim09G0035400' => 'rsi', 'Rhsim13G0092600' => 'rsi', 'Sabra05G0103400' => 'sbr', 'Sabra09G0040000' => 'sbr', 'SalBow5G5464' => 'sbo', 'Sc06g0010510' => 'sci', 'Sc16g0000950' => 'sci', 'Sed0004107' => 'sed', 'Sed0006496' => 'sed', 'SEGI_13794' => 'sgi', 'SEGI_19513' => 'sgi', 'SGA_v2.0_scaffold2G00910' => 'sas', 'SGA_v2.0_scaffold33G13385' => 'sas', 'SGA_v2.0_scaffold61G21168' => 'sas', 'SHI06059' => 'shi', 'SHI08678' => 'shi', 'SMO137G0028' => 'smo', 'SMO141G0312' => 'smo', 'SMO351G0425' => 'smo', 'SMO364G0856' => 'smo', 'Solyc02g085590.4' => 'sly', 'Solyc03g044210.4' => 'sly', 'Solyc06g075260.3' => 'sly', 'Solyc06g075270.4' => 'sly', 'Solyc06g075280.3' => 'sly', 'Solyc06g075290.4' => 'sly', 'Solyc06g075300.3' => 'sly', 'Solyc06g075320.3' => 'sly', 'Solyc11g072380.2' => 'sly', 'Sopen02g030260' => 'spe', 'Sopen03g008250' => 'spe', 'Sopen06g031650' => 'spe', 'Sopen06g031660' => 'spe', 'Sopen06g031670' => 'spe', 'Sopen06g031690' => 'spe', 'Sopen06g031700' => 'spe', 'Sopen06g031720' => 'spe', 'Sopen11g030030' => 'spe', 'Sp3g31990' => 'spa', 'Sp4g11320' => 'spa', 'Sp7g34360' => 'spa', 'TAR369G0446' => 'tar', 'TAR381G1082' => 'tar', 'TAR623G0167' => 'tar', 'TAR623G0459' => 'tar', 'THA.LOC104800613' => 'tha', 'THA.LOC104807543' => 'tha', 'THA.LOC104819798' => 'tha', 'Thecc.01G039500' => 'tca', 'Thecc.09G260000' => 'tca', 'Thhalv10017921m.g' => 'esa', 'Thhalv10024697m.g' => 'esa', 'TPR.G11484' => 'tpr', 'TPR.G11569' => 'tpr', 'TPR.G14921' => 'tpr', 'TPR.G18814' => 'tpr', 'TPR.G27035' => 'tpr', 'TWI31G0073' => 'twi', 'TWI53G1751' => 'twi', 'TWI79G1599' => 'twi', 'unitig_0.g1037' => 'ugi', 'unitig_52.g17593' => 'ugi', 'vmacro03174' => 'vma', 'vmacro14457' => 'vma', 'vmacro14458' => 'vma', 'vmacro14459' => 'vma', 'vmacro14460' => 'vma', 'vmacro14461' => 'vma', 'vmacro17861' => 'vma', 'VMungo1127G0357' => 'vmu', 'Zm00001eb016090' => 'zma', 'Zm00001eb401000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001788', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001788' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '365', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001788' ) ), 'genes' => array( 'A03p64410' => 'bna', 'A03p64420' => 'bna', 'A06p33160' => 'bna', 'A07p19060' => 'bna', 'A08p22360' => 'bna', 'Aa31LG5G7720' => 'aar', 'Aa31LG6G13510' => 'aar', 'Aa31LG8G15510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.190' => 'aag', 'Actinidia07116' => 'ach', 'Actinidia19166' => 'ach', 'Actinidia24080' => 'ach', 'Ah.01g015020' => 'amhyb', 'Ah.03g139310' => 'amhyb', 'AL3G51880' => 'aly', 'AL4G22870' => 'aly', 'AL7G14310' => 'aly', 'Aqoxy4G03215' => 'aox', 'Aqoxy5G01682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3263BZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65BX45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW9F3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G27FXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0N14A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2EEE' => 'arhy', 'AT2G18540' => 'ath', 'AT2G28490' => 'ath', 'AT4G36700' => 'ath', 'ATR0733G179' => 'atr', 'ATR1159G004' => 'atr', 'Atru.chr3.537' => 'acertr', 'AUR62003182' => 'cqu', 'AUR62006523' => 'cqu', 'AUR62008002' => 'cqu', 'AUR62025011' => 'cqu', 'BcaB02g10164' => 'bca', 'BcaB03g12375' => 'bca', 'BcaB08g34828' => 'bca', 'BcaC01g00447' => 'bca', 'BcaC01g02859' => 'bca', 'BcaC02g10963' => 'bca', 'BcaC02g10964' => 'bca', 'BcaNung06145' => 'bca', 'BcaNung07141' => 'bca', 'BolC3t18190H' => 'bol', 'BolC3t20247H' => 'bol', 'BolC4t23782H' => 'bol', 'BolC7t46609H' => 'bol', 'BraA03t15508Z' => 'bra', 'BraA03t15509Z' => 'bra', 'BraA06t26247Z' => 'bra', 'BraA07t29611Z' => 'bra', 'BraA08t34192Z' => 'bra', 'C03p59290' => 'bna', 'C03p79950' => 'bna', 'C04p22860' => 'bna', 'C07p61870' => 'bna', 'CAN.G1001.13' => 'can', 'CAN.G1001.15' => 'can', 'CAN.G1001.16' => 'can', 'CAN.G1001.17' => 'can', 'CAN.G1001.19' => 'can', 'CAN.G1001.20' => 'can', 'CAN.G1001.21' => 'can', 'CAN.G1839.6' => 'can', 'CAN.G1839.7' => 'can', 'CAN.G1839.9' => 'can', 'CAN.G358.123' => 'can', 'CAN.G553.2' => 'can', 'CANSAT01G3243' => 'cansat', 'CANSAT54G1656' => 'cansat', 'CARHR109140' => 'chi', 'CARHR121490' => 'chi', 'CARHR245050' => 'chi', 'Carub.0003s3273' => 'cru', 'Carub.0004s0944' => 'cru', 'Carub.0007s0362' => 'cru', 'Ca_00392_v3' => 'car', 'Ca_01432_v3' => 'car', 'Ca_19243_v3' => 'car', 'CBR_g37795' => 'cbr', 'CBR_g48323' => 'cbr', 'CBR_g6738' => 'cbr', 'CBR_g6739' => 'cbr', 'Cc01_g11520' => 'ccan', 'Cc07_g09190' => 'ccan', 'Cc07_g09200' => 'ccan', 'CDE01G0620' => 'cde', 'CDE02G0356' => 'cde', 'CDE02G0946' => 'cde', 'CDE09G0795' => 'cde', 'Cfa004281' => 'cfa', 'Cfa011361' => 'cfa', 'Ciclev10027019m.g' => 'ccl', 'Ciclev10028266m.g' => 'ccl', 'CiPaw.01G034800' => 'cil', 'CiPaw.14G078000' => 'cil', 'ClCG01G019390' => 'cla', 'ClCG02G020970' => 'cla', 'COL.COLO4_05496' => 'col', 'COL.COLO4_06592' => 'col', 'COL.COLO4_08544' => 'col', 'COL.COLO4_22115' => 'col', 'COL.COLO4_24138' => 'col', 'COL.COLO4_25243' => 'col', 'COL.COLO4_25244' => 'col', 'Cpa.g.sc139.71' => 'cpa', 'Cpa.g.sc158.3' => 'cpa', 'Cpa.g.sc62.100' => 'cpa', 'CsaV3_6G021660' => 'csa', 'CsaV3_6G046100' => 'csa', 'CSS0016309' => 'camsi', 'CSS0019731' => 'camsi', 'CSS0045971' => 'camsi', 'DCAR_018830' => 'dca', 'DCAR_021445' => 'dca', 'Dinv04503' => 'din', 'Dinv26810' => 'din', 'Dinv26811' => 'din', 'Dinv32785' => 'din', 'Dinv32786' => 'din', 'Dinv39960' => 'din', 'Duzib168G1312' => 'dzi', 'Duzib187G1910' => 'dzi', 'ECA233G5833' => 'eca', 'ECA238G1560' => 'eca', 'ECA238G1711' => 'eca', 'ECA238G3485' => 'eca', 'ECA238G4653' => 'eca', 'ECA246G3405' => 'eca', 'EL10Ac6g14913' => 'bvu', 'EL10Ac9g22469' => 'bvu', 'Eucgr.B02472' => 'egr', 'Eucgr.J00948' => 'egr', 'FAN11G1933' => 'fan', 'FAN11G2704' => 'fan', 'FAN11G3753' => 'fan', 'FAN16G0706' => 'fan', 'FAN16G2054' => 'fan', 'FAN16G2791' => 'fan', 'FAN19G0942' => 'fan', 'FAN21G0076' => 'fan', 'FAN21G3350' => 'fan', 'FAN21G4030' => 'fan', 'FAN23G0891' => 'fan', 'FAN25G0620' => 'fan', 'FAN25G0759' => 'fan', 'FAN25G2815' => 'fan', 'FAN25G2967' => 'fan', 'FAN26G2185' => 'fan', 'FAN28G0335' => 'fan', 'FvH4_1g13730' => 'fve', 'FvH4_3g33170' => 'fve', 'FvH4_3g33180' => 'fve', 'FvH4_3g33190' => 'fve', 'FvH4_3g33240' => 'fve', 'Glyma.01G177000' => 'gma', 'Glyma.11G065800' => 'gma', 'Glyma.11G153587' => 'gma', 'Glyma.12G071600' => 'gma', 'Glyma.13G328400' => 'gma', 'Gohir.A03G161350' => 'ghi', 'Gohir.A07G116400' => 'ghi', 'Gohir.A11G186000' => 'ghi', 'Gohir.D07G120800' => 'ghi', 'Gohir.D11G192600' => 'ghi', 'Gorai.001G130200' => 'gra', 'Gorai.007G205600' => 'gra', 'GSVIVG01019005001' => 'vvi', 'GSVIVG01025139001' => 'vvi', 'HanXRQChr03g0071451' => 'han', 'HanXRQChr06g0170171' => 'han', 'HanXRQChr07g0190491' => 'han', 'HanXRQChr13g0404461' => 'han', 'Haze_15119' => 'cav', 'Haze_23907' => 'cav', 'Haze_23908' => 'cav', 'Hma1.2p1_0071F.1_g038040' => 'hma', 'Hma1.2p1_0568F.1_g180210' => 'hma', 'Hma1.2p1_0905F.1_g235320' => 'hma', 'Hma1.2p1_1228F.1_g268600' => 'hma', 'HPP92_014258' => 'vpl', 'HPP92_021307' => 'vpl', 'Lalb_Chr01g0004171' => 'lal', 'Lalb_Chr05g0212941' => 'lal', 'Lalb_Chr09g0322571' => 'lal', 'Lalb_Chr14g0374791' => 'lal', 'Lalb_Chr22g0350181' => 'lal', 'Lj2A1035T49' => 'lonja', 'Lj2C448T6' => 'lonja', 'Lj2g0000276' => 'lja', 'Lj3g0006595' => 'lja', 'Lj3g0013428' => 'lja', 'Lsat_1_v5_gn_2_76801' => 'lsa', 'Lsat_1_v5_gn_2_77901' => 'lsa', 'Lsat_1_v5_gn_3_78340' => 'lsa', 'Lsat_1_v5_gn_6_47021' => 'lsa', 'Manes.11G141600' => 'mes', 'Manes.12G089864' => 'mes', 'Manes.13G137200' => 'mes', 'MBI14_g19545_MAGBIO' => 'mbi', 'MBI16_g37295_MAGBIO' => 'mbi', 'MD02G1152000' => 'mdo', 'MD03G1105100' => 'mdo', 'MD11G1130400' => 'mdo', 'MD15G1266400' => 'mdo', 'Medtr2g093350' => 'mtr', 'Medtr2g093390' => 'mtr', 'Medtr2g093410' => 'mtr', 'Medtr2g093520' => 'mtr', 'Medtr2g093550' => 'mtr', 'Medtr2g093590' => 'mtr', 'Medtr2g093620' => 'mtr', 'Medtr2g093630' => 'mtr', 'Medtr4g060780' => 'mtr', 'Medtr5g019780' => 'mtr', 'MELO3C007813.2' => 'cme', 'MELO3C025750.2' => 'cme', 'Migut.D02185' => 'egut', 'Migut.H00185' => 'egut', 'Migut.N02619' => 'egut', 'MSTRG.18636' => 'ama', 'Nitab4.5_0000106g0050' => 'nta', 'Nitab4.5_0000196g0010' => 'nta', 'Nitab4.5_0000196g0020' => 'nta', 'Nitab4.5_0001279g0150' => 'nta', 'Nitab4.5_0001802g0100' => 'nta', 'Nitab4.5_0002128g0030' => 'nta', 'Nitab4.5_0002129g0100' => 'nta', 'Nn1g02542' => 'nnu', 'Nn1g02543' => 'nnu', 'Nn1g05077' => 'nnu', 'Nn2g10684' => 'nnu', 'Nn2g13012' => 'nnu', 'Nn4g24405' => 'nnu', 'Nn5g29533' => 'nnu', 'Oeu005907.1' => 'oeu', 'Oeu021563.1' => 'oeu', 'Oeu031890.1' => 'oeu', 'Oeu036289.1' => 'oeu', 'Oeu059105.2' => 'oeu', 'Os03g0197300' => 'osa', 'Os03g0336100' => 'osa', 'Peaxi162Scf00101g00910' => 'pax', 'Peaxi162Scf00205g00011' => 'pax', 'Peaxi162Scf00389g00093' => 'pax', 'Peaxi162Scf00427g00512' => 'pax', 'Peaxi162Scf00476g00220' => 'pax', 'Peaxi162Scf00476g00223' => 'pax', 'Peaxi162Scf00476g00315' => 'pax', 'Peaxi162Scf00476g00321' => 'pax', 'PGR102G3185' => 'pgr', 'PGR119G1372' => 'pgr', 'PGSC0003DMG400003374' => 'stu', 'PGSC0003DMG400007501' => 'stu', 'PGSC0003DMG400007502' => 'stu', 'PGSC0003DMG400012661' => 'stu', 'PGSC0003DMG400020917' => 'stu', 'PGSC0003DMG400027378' => 'stu', 'PGSC0003DMG401007500' => 'stu', 'PGSC0003DMG402007500' => 'stu', 'Phvul.002G027900' => 'pvu', 'Phvul.005G137200' => 'pvu', 'Phvul.011G072800' => 'pvu', 'Potri.001G259208' => 'ptr', 'Potri.007G029100' => 'ptr', 'Potri.009G054700' => 'ptr', 'Prupe.1G032200' => 'ppe', 'Prupe.6G095000' => 'ppe', 'Prupe.7G151000' => 'ppe', 'Psat0s137g0280' => 'psa', 'Psat2g161120' => 'psa', 'Psat5g277440' => 'psa', 'PSO063G6855' => 'pso', 'PSO170G3836' => 'pso', 'QL01p037284' => 'qlo', 'QL06p045400' => 'qlo', 'RcHm_v2.0_Chr2g0102141' => 'rch', 'RcHm_v2.0_Chr5g0060491' => 'rch', 'RcHm_v2.0_Chr5g0060501' => 'rch', 'RcHm_v2.0_Chr5g0060531' => 'rch', 'RcHm_v2.0_Chr5g0060591' => 'rch', 'Rhsim01G0219300' => 'rsi', 'Rhsim01G0219400' => 'rsi', 'Rhsim01G0219500' => 'rsi', 'Rhsim01G0219600' => 'rsi', 'Rhsim01G0219700' => 'rsi', 'Rhsim01G0219800' => 'rsi', 'Rhsim01G0219900' => 'rsi', 'Rhsim01G0220000' => 'rsi', 'Rhsim08G0112800' => 'rsi', 'Rhsim09G0035200' => 'rsi', 'Rhsim09G0035300' => 'rsi', 'Rhsim09G0035400' => 'rsi', 'Rhsim13G0092600' => 'rsi', 'Sabra05G0103400' => 'sbr', 'Sabra09G0040000' => 'sbr', 'SalBow5G5464' => 'sbo', 'Sc06g0010510' => 'sci', 'Sc16g0000950' => 'sci', 'Sed0004107' => 'sed', 'Sed0006496' => 'sed', 'SEGI_13794' => 'sgi', 'SEGI_19513' => 'sgi', 'SGA_v2.0_scaffold2G00910' => 'sas', 'SGA_v2.0_scaffold33G13385' => 'sas', 'SGA_v2.0_scaffold61G21168' => 'sas', 'SHI06059' => 'shi', 'SHI08678' => 'shi', 'SMO137G0028' => 'smo', 'SMO141G0312' => 'smo', 'SMO351G0425' => 'smo', 'SMO364G0856' => 'smo', 'Solyc02g085590.4' => 'sly', 'Solyc03g044210.4' => 'sly', 'Solyc06g075260.3' => 'sly', 'Solyc06g075270.4' => 'sly', 'Solyc06g075280.3' => 'sly', 'Solyc06g075290.4' => 'sly', 'Solyc06g075300.3' => 'sly', 'Solyc06g075320.3' => 'sly', 'Solyc11g072380.2' => 'sly', 'Sopen02g030260' => 'spe', 'Sopen03g008250' => 'spe', 'Sopen06g031650' => 'spe', 'Sopen06g031660' => 'spe', 'Sopen06g031670' => 'spe', 'Sopen06g031690' => 'spe', 'Sopen06g031700' => 'spe', 'Sopen06g031720' => 'spe', 'Sopen11g030030' => 'spe', 'Sp3g31990' => 'spa', 'Sp4g11320' => 'spa', 'Sp7g34360' => 'spa', 'TAR369G0446' => 'tar', 'TAR381G1082' => 'tar', 'TAR623G0167' => 'tar', 'TAR623G0459' => 'tar', 'THA.LOC104800613' => 'tha', 'THA.LOC104807543' => 'tha', 'THA.LOC104819798' => 'tha', 'Thecc.01G039500' => 'tca', 'Thecc.09G260000' => 'tca', 'Thhalv10017921m.g' => 'esa', 'Thhalv10024697m.g' => 'esa', 'TPR.G11484' => 'tpr', 'TPR.G11569' => 'tpr', 'TPR.G14921' => 'tpr', 'TPR.G18814' => 'tpr', 'TPR.G27035' => 'tpr', 'TWI31G0073' => 'twi', 'TWI53G1751' => 'twi', 'TWI79G1599' => 'twi', 'unitig_0.g1037' => 'ugi', 'unitig_52.g17593' => 'ugi', 'vmacro03174' => 'vma', 'vmacro14457' => 'vma', 'vmacro14458' => 'vma', 'vmacro14459' => 'vma', 'vmacro14460' => 'vma', 'vmacro14461' => 'vma', 'vmacro17861' => 'vma', 'VMungo1127G0357' => 'vmu', 'Zm00001eb016090' => 'zma', 'Zm00001eb401000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001788' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001788' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001788' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001788' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '365', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p64410' => 'bna', 'A03p64420' => 'bna', 'A06p33160' => 'bna', 'A07p19060' => 'bna', 'A08p22360' => 'bna', 'Aa31LG5G7720' => 'aar', 'Aa31LG6G13510' => 'aar', 'Aa31LG8G15510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.190' => 'aag', 'Actinidia07116' => 'ach', 'Actinidia19166' => 'ach', 'Actinidia24080' => 'ach', 'Ah.01g015020' => 'amhyb', 'Ah.03g139310' => 'amhyb', 'AL3G51880' => 'aly', 'AL4G22870' => 'aly', 'AL7G14310' => 'aly', 'Aqoxy4G03215' => 'aox', 'Aqoxy5G01682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3263BZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65BX45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW9F3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G27FXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0N14A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2EEE' => 'arhy', 'AT2G18540' => 'ath', 'AT2G28490' => 'ath', 'AT4G36700' => 'ath', 'ATR0733G179' => 'atr', 'ATR1159G004' => 'atr', 'Atru.chr3.537' => 'acertr', 'AUR62003182' => 'cqu', 'AUR62006523' => 'cqu', 'AUR62008002' => 'cqu', 'AUR62025011' => 'cqu', 'BcaB02g10164' => 'bca', 'BcaB03g12375' => 'bca', 'BcaB08g34828' => 'bca', 'BcaC01g00447' => 'bca', 'BcaC01g02859' => 'bca', 'BcaC02g10963' => 'bca', 'BcaC02g10964' => 'bca', 'BcaNung06145' => 'bca', 'BcaNung07141' => 'bca', 'BolC3t18190H' => 'bol', 'BolC3t20247H' => 'bol', 'BolC4t23782H' => 'bol', 'BolC7t46609H' => 'bol', 'BraA03t15508Z' => 'bra', 'BraA03t15509Z' => 'bra', 'BraA06t26247Z' => 'bra', 'BraA07t29611Z' => 'bra', 'BraA08t34192Z' => 'bra', 'C03p59290' => 'bna', 'C03p79950' => 'bna', 'C04p22860' => 'bna', 'C07p61870' => 'bna', 'CAN.G1001.13' => 'can', 'CAN.G1001.15' => 'can', 'CAN.G1001.16' => 'can', 'CAN.G1001.17' => 'can', 'CAN.G1001.19' => 'can', 'CAN.G1001.20' => 'can', 'CAN.G1001.21' => 'can', 'CAN.G1839.6' => 'can', 'CAN.G1839.7' => 'can', 'CAN.G1839.9' => 'can', 'CAN.G358.123' => 'can', 'CAN.G553.2' => 'can', 'CANSAT01G3243' => 'cansat', 'CANSAT54G1656' => 'cansat', 'CARHR109140' => 'chi', 'CARHR121490' => 'chi', 'CARHR245050' => 'chi', 'Carub.0003s3273' => 'cru', 'Carub.0004s0944' => 'cru', 'Carub.0007s0362' => 'cru', 'Ca_00392_v3' => 'car', 'Ca_01432_v3' => 'car', 'Ca_19243_v3' => 'car', 'CBR_g37795' => 'cbr', 'CBR_g48323' => 'cbr', 'CBR_g6738' => 'cbr', 'CBR_g6739' => 'cbr', 'Cc01_g11520' => 'ccan', 'Cc07_g09190' => 'ccan', 'Cc07_g09200' => 'ccan', 'CDE01G0620' => 'cde', 'CDE02G0356' => 'cde', 'CDE02G0946' => 'cde', 'CDE09G0795' => 'cde', 'Cfa004281' => 'cfa', 'Cfa011361' => 'cfa', 'Ciclev10027019m.g' => 'ccl', 'Ciclev10028266m.g' => 'ccl', 'CiPaw.01G034800' => 'cil', 'CiPaw.14G078000' => 'cil', 'ClCG01G019390' => 'cla', 'ClCG02G020970' => 'cla', 'COL.COLO4_05496' => 'col', 'COL.COLO4_06592' => 'col', 'COL.COLO4_08544' => 'col', 'COL.COLO4_22115' => 'col', 'COL.COLO4_24138' => 'col', 'COL.COLO4_25243' => 'col', 'COL.COLO4_25244' => 'col', 'Cpa.g.sc139.71' => 'cpa', 'Cpa.g.sc158.3' => 'cpa', 'Cpa.g.sc62.100' => 'cpa', 'CsaV3_6G021660' => 'csa', 'CsaV3_6G046100' => 'csa', 'CSS0016309' => 'camsi', 'CSS0019731' => 'camsi', 'CSS0045971' => 'camsi', 'DCAR_018830' => 'dca', 'DCAR_021445' => 'dca', 'Dinv04503' => 'din', 'Dinv26810' => 'din', 'Dinv26811' => 'din', 'Dinv32785' => 'din', 'Dinv32786' => 'din', 'Dinv39960' => 'din', 'Duzib168G1312' => 'dzi', 'Duzib187G1910' => 'dzi', 'ECA233G5833' => 'eca', 'ECA238G1560' => 'eca', 'ECA238G1711' => 'eca', 'ECA238G3485' => 'eca', 'ECA238G4653' => 'eca', 'ECA246G3405' => 'eca', 'EL10Ac6g14913' => 'bvu', 'EL10Ac9g22469' => 'bvu', 'Eucgr.B02472' => 'egr', 'Eucgr.J00948' => 'egr', 'FAN11G1933' => 'fan', 'FAN11G2704' => 'fan', 'FAN11G3753' => 'fan', 'FAN16G0706' => 'fan', 'FAN16G2054' => 'fan', 'FAN16G2791' => 'fan', 'FAN19G0942' => 'fan', 'FAN21G0076' => 'fan', 'FAN21G3350' => 'fan', 'FAN21G4030' => 'fan', 'FAN23G0891' => 'fan', 'FAN25G0620' => 'fan', 'FAN25G0759' => 'fan', 'FAN25G2815' => 'fan', 'FAN25G2967' => 'fan', 'FAN26G2185' => 'fan', 'FAN28G0335' => 'fan', 'FvH4_1g13730' => 'fve', 'FvH4_3g33170' => 'fve', 'FvH4_3g33180' => 'fve', 'FvH4_3g33190' => 'fve', 'FvH4_3g33240' => 'fve', 'Glyma.01G177000' => 'gma', 'Glyma.11G065800' => 'gma', 'Glyma.11G153587' => 'gma', 'Glyma.12G071600' => 'gma', 'Glyma.13G328400' => 'gma', 'Gohir.A03G161350' => 'ghi', 'Gohir.A07G116400' => 'ghi', 'Gohir.A11G186000' => 'ghi', 'Gohir.D07G120800' => 'ghi', 'Gohir.D11G192600' => 'ghi', 'Gorai.001G130200' => 'gra', 'Gorai.007G205600' => 'gra', 'GSVIVG01019005001' => 'vvi', 'GSVIVG01025139001' => 'vvi', 'HanXRQChr03g0071451' => 'han', 'HanXRQChr06g0170171' => 'han', 'HanXRQChr07g0190491' => 'han', 'HanXRQChr13g0404461' => 'han', 'Haze_15119' => 'cav', 'Haze_23907' => 'cav', 'Haze_23908' => 'cav', 'Hma1.2p1_0071F.1_g038040' => 'hma', 'Hma1.2p1_0568F.1_g180210' => 'hma', 'Hma1.2p1_0905F.1_g235320' => 'hma', 'Hma1.2p1_1228F.1_g268600' => 'hma', 'HPP92_014258' => 'vpl', 'HPP92_021307' => 'vpl', 'Lalb_Chr01g0004171' => 'lal', 'Lalb_Chr05g0212941' => 'lal', 'Lalb_Chr09g0322571' => 'lal', 'Lalb_Chr14g0374791' => 'lal', 'Lalb_Chr22g0350181' => 'lal', 'Lj2A1035T49' => 'lonja', 'Lj2C448T6' => 'lonja', 'Lj2g0000276' => 'lja', 'Lj3g0006595' => 'lja', 'Lj3g0013428' => 'lja', 'Lsat_1_v5_gn_2_76801' => 'lsa', 'Lsat_1_v5_gn_2_77901' => 'lsa', 'Lsat_1_v5_gn_3_78340' => 'lsa', 'Lsat_1_v5_gn_6_47021' => 'lsa', 'Manes.11G141600' => 'mes', 'Manes.12G089864' => 'mes', 'Manes.13G137200' => 'mes', 'MBI14_g19545_MAGBIO' => 'mbi', 'MBI16_g37295_MAGBIO' => 'mbi', 'MD02G1152000' => 'mdo', 'MD03G1105100' => 'mdo', 'MD11G1130400' => 'mdo', 'MD15G1266400' => 'mdo', 'Medtr2g093350' => 'mtr', 'Medtr2g093390' => 'mtr', 'Medtr2g093410' => 'mtr', 'Medtr2g093520' => 'mtr', 'Medtr2g093550' => 'mtr', 'Medtr2g093590' => 'mtr', 'Medtr2g093620' => 'mtr', 'Medtr2g093630' => 'mtr', 'Medtr4g060780' => 'mtr', 'Medtr5g019780' => 'mtr', 'MELO3C007813.2' => 'cme', 'MELO3C025750.2' => 'cme', 'Migut.D02185' => 'egut', 'Migut.H00185' => 'egut', 'Migut.N02619' => 'egut', 'MSTRG.18636' => 'ama', 'Nitab4.5_0000106g0050' => 'nta', 'Nitab4.5_0000196g0010' => 'nta', 'Nitab4.5_0000196g0020' => 'nta', 'Nitab4.5_0001279g0150' => 'nta', 'Nitab4.5_0001802g0100' => 'nta', 'Nitab4.5_0002128g0030' => 'nta', 'Nitab4.5_0002129g0100' => 'nta', 'Nn1g02542' => 'nnu', 'Nn1g02543' => 'nnu', 'Nn1g05077' => 'nnu', 'Nn2g10684' => 'nnu', 'Nn2g13012' => 'nnu', 'Nn4g24405' => 'nnu', 'Nn5g29533' => 'nnu', 'Oeu005907.1' => 'oeu', 'Oeu021563.1' => 'oeu', 'Oeu031890.1' => 'oeu', 'Oeu036289.1' => 'oeu', 'Oeu059105.2' => 'oeu', 'Os03g0197300' => 'osa', 'Os03g0336100' => 'osa', 'Peaxi162Scf00101g00910' => 'pax', 'Peaxi162Scf00205g00011' => 'pax', 'Peaxi162Scf00389g00093' => 'pax', 'Peaxi162Scf00427g00512' => 'pax', 'Peaxi162Scf00476g00220' => 'pax', 'Peaxi162Scf00476g00223' => 'pax', 'Peaxi162Scf00476g00315' => 'pax', 'Peaxi162Scf00476g00321' => 'pax', 'PGR102G3185' => 'pgr', 'PGR119G1372' => 'pgr', 'PGSC0003DMG400003374' => 'stu', 'PGSC0003DMG400007501' => 'stu', 'PGSC0003DMG400007502' => 'stu', 'PGSC0003DMG400012661' => 'stu', 'PGSC0003DMG400020917' => 'stu', 'PGSC0003DMG400027378' => 'stu', 'PGSC0003DMG401007500' => 'stu', 'PGSC0003DMG402007500' => 'stu', 'Phvul.002G027900' => 'pvu', 'Phvul.005G137200' => 'pvu', 'Phvul.011G072800' => 'pvu', 'Potri.001G259208' => 'ptr', 'Potri.007G029100' => 'ptr', 'Potri.009G054700' => 'ptr', 'Prupe.1G032200' => 'ppe', 'Prupe.6G095000' => 'ppe', 'Prupe.7G151000' => 'ppe', 'Psat0s137g0280' => 'psa', 'Psat2g161120' => 'psa', 'Psat5g277440' => 'psa', 'PSO063G6855' => 'pso', 'PSO170G3836' => 'pso', 'QL01p037284' => 'qlo', 'QL06p045400' => 'qlo', 'RcHm_v2.0_Chr2g0102141' => 'rch', 'RcHm_v2.0_Chr5g0060491' => 'rch', 'RcHm_v2.0_Chr5g0060501' => 'rch', 'RcHm_v2.0_Chr5g0060531' => 'rch', 'RcHm_v2.0_Chr5g0060591' => 'rch', 'Rhsim01G0219300' => 'rsi', 'Rhsim01G0219400' => 'rsi', 'Rhsim01G0219500' => 'rsi', 'Rhsim01G0219600' => 'rsi', 'Rhsim01G0219700' => 'rsi', 'Rhsim01G0219800' => 'rsi', 'Rhsim01G0219900' => 'rsi', 'Rhsim01G0220000' => 'rsi', 'Rhsim08G0112800' => 'rsi', 'Rhsim09G0035200' => 'rsi', 'Rhsim09G0035300' => 'rsi', 'Rhsim09G0035400' => 'rsi', 'Rhsim13G0092600' => 'rsi', 'Sabra05G0103400' => 'sbr', 'Sabra09G0040000' => 'sbr', 'SalBow5G5464' => 'sbo', 'Sc06g0010510' => 'sci', 'Sc16g0000950' => 'sci', 'Sed0004107' => 'sed', 'Sed0006496' => 'sed', 'SEGI_13794' => 'sgi', 'SEGI_19513' => 'sgi', 'SGA_v2.0_scaffold2G00910' => 'sas', 'SGA_v2.0_scaffold33G13385' => 'sas', 'SGA_v2.0_scaffold61G21168' => 'sas', 'SHI06059' => 'shi', 'SHI08678' => 'shi', 'SMO137G0028' => 'smo', 'SMO141G0312' => 'smo', 'SMO351G0425' => 'smo', 'SMO364G0856' => 'smo', 'Solyc02g085590.4' => 'sly', 'Solyc03g044210.4' => 'sly', 'Solyc06g075260.3' => 'sly', 'Solyc06g075270.4' => 'sly', 'Solyc06g075280.3' => 'sly', 'Solyc06g075290.4' => 'sly', 'Solyc06g075300.3' => 'sly', 'Solyc06g075320.3' => 'sly', 'Solyc11g072380.2' => 'sly', 'Sopen02g030260' => 'spe', 'Sopen03g008250' => 'spe', 'Sopen06g031650' => 'spe', 'Sopen06g031660' => 'spe', 'Sopen06g031670' => 'spe', 'Sopen06g031690' => 'spe', 'Sopen06g031700' => 'spe', 'Sopen06g031720' => 'spe', 'Sopen11g030030' => 'spe', 'Sp3g31990' => 'spa', 'Sp4g11320' => 'spa', 'Sp7g34360' => 'spa', 'TAR369G0446' => 'tar', 'TAR381G1082' => 'tar', 'TAR623G0167' => 'tar', 'TAR623G0459' => 'tar', 'THA.LOC104800613' => 'tha', 'THA.LOC104807543' => 'tha', 'THA.LOC104819798' => 'tha', 'Thecc.01G039500' => 'tca', 'Thecc.09G260000' => 'tca', 'Thhalv10017921m.g' => 'esa', 'Thhalv10024697m.g' => 'esa', 'TPR.G11484' => 'tpr', 'TPR.G11569' => 'tpr', 'TPR.G14921' => 'tpr', 'TPR.G18814' => 'tpr', 'TPR.G27035' => 'tpr', 'TWI31G0073' => 'twi', 'TWI53G1751' => 'twi', 'TWI79G1599' => 'twi', 'unitig_0.g1037' => 'ugi', 'unitig_52.g17593' => 'ugi', 'vmacro03174' => 'vma', 'vmacro14457' => 'vma', 'vmacro14458' => 'vma', 'vmacro14459' => 'vma', 'vmacro14460' => 'vma', 'vmacro14461' => 'vma', 'vmacro17861' => 'vma', 'VMungo1127G0357' => 'vmu', 'Zm00001eb016090' => 'zma', 'Zm00001eb401000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001788', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001788' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '365', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001788' ) ), 'genes' => array( 'A03p64410' => 'bna', 'A03p64420' => 'bna', 'A06p33160' => 'bna', 'A07p19060' => 'bna', 'A08p22360' => 'bna', 'Aa31LG5G7720' => 'aar', 'Aa31LG6G13510' => 'aar', 'Aa31LG8G15510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.190' => 'aag', 'Actinidia07116' => 'ach', 'Actinidia19166' => 'ach', 'Actinidia24080' => 'ach', 'Ah.01g015020' => 'amhyb', 'Ah.03g139310' => 'amhyb', 'AL3G51880' => 'aly', 'AL4G22870' => 'aly', 'AL7G14310' => 'aly', 'Aqoxy4G03215' => 'aox', 'Aqoxy5G01682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3263BZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65BX45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VW9F3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G27FXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0N14A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2EEE' => 'arhy', 'AT2G18540' => 'ath', 'AT2G28490' => 'ath', 'AT4G36700' => 'ath', 'ATR0733G179' => 'atr', 'ATR1159G004' => 'atr', 'Atru.chr3.537' => 'acertr', 'AUR62003182' => 'cqu', 'AUR62006523' => 'cqu', 'AUR62008002' => 'cqu', 'AUR62025011' => 'cqu', 'BcaB02g10164' => 'bca', 'BcaB03g12375' => 'bca', 'BcaB08g34828' => 'bca', 'BcaC01g00447' => 'bca', 'BcaC01g02859' => 'bca', 'BcaC02g10963' => 'bca', 'BcaC02g10964' => 'bca', 'BcaNung06145' => 'bca', 'BcaNung07141' => 'bca', 'BolC3t18190H' => 'bol', 'BolC3t20247H' => 'bol', 'BolC4t23782H' => 'bol', 'BolC7t46609H' => 'bol', 'BraA03t15508Z' => 'bra', 'BraA03t15509Z' => 'bra', 'BraA06t26247Z' => 'bra', 'BraA07t29611Z' => 'bra', 'BraA08t34192Z' => 'bra', 'C03p59290' => 'bna', 'C03p79950' => 'bna', 'C04p22860' => 'bna', 'C07p61870' => 'bna', 'CAN.G1001.13' => 'can', 'CAN.G1001.15' => 'can', 'CAN.G1001.16' => 'can', 'CAN.G1001.17' => 'can', 'CAN.G1001.19' => 'can', 'CAN.G1001.20' => 'can', 'CAN.G1001.21' => 'can', 'CAN.G1839.6' => 'can', 'CAN.G1839.7' => 'can', 'CAN.G1839.9' => 'can', 'CAN.G358.123' => 'can', 'CAN.G553.2' => 'can', 'CANSAT01G3243' => 'cansat', 'CANSAT54G1656' => 'cansat', 'CARHR109140' => 'chi', 'CARHR121490' => 'chi', 'CARHR245050' => 'chi', 'Carub.0003s3273' => 'cru', 'Carub.0004s0944' => 'cru', 'Carub.0007s0362' => 'cru', 'Ca_00392_v3' => 'car', 'Ca_01432_v3' => 'car', 'Ca_19243_v3' => 'car', 'CBR_g37795' => 'cbr', 'CBR_g48323' => 'cbr', 'CBR_g6738' => 'cbr', 'CBR_g6739' => 'cbr', 'Cc01_g11520' => 'ccan', 'Cc07_g09190' => 'ccan', 'Cc07_g09200' => 'ccan', 'CDE01G0620' => 'cde', 'CDE02G0356' => 'cde', 'CDE02G0946' => 'cde', 'CDE09G0795' => 'cde', 'Cfa004281' => 'cfa', 'Cfa011361' => 'cfa', 'Ciclev10027019m.g' => 'ccl', 'Ciclev10028266m.g' => 'ccl', 'CiPaw.01G034800' => 'cil', 'CiPaw.14G078000' => 'cil', 'ClCG01G019390' => 'cla', 'ClCG02G020970' => 'cla', 'COL.COLO4_05496' => 'col', 'COL.COLO4_06592' => 'col', 'COL.COLO4_08544' => 'col', 'COL.COLO4_22115' => 'col', 'COL.COLO4_24138' => 'col', 'COL.COLO4_25243' => 'col', 'COL.COLO4_25244' => 'col', 'Cpa.g.sc139.71' => 'cpa', 'Cpa.g.sc158.3' => 'cpa', 'Cpa.g.sc62.100' => 'cpa', 'CsaV3_6G021660' => 'csa', 'CsaV3_6G046100' => 'csa', 'CSS0016309' => 'camsi', 'CSS0019731' => 'camsi', 'CSS0045971' => 'camsi', 'DCAR_018830' => 'dca', 'DCAR_021445' => 'dca', 'Dinv04503' => 'din', 'Dinv26810' => 'din', 'Dinv26811' => 'din', 'Dinv32785' => 'din', 'Dinv32786' => 'din', 'Dinv39960' => 'din', 'Duzib168G1312' => 'dzi', 'Duzib187G1910' => 'dzi', 'ECA233G5833' => 'eca', 'ECA238G1560' => 'eca', 'ECA238G1711' => 'eca', 'ECA238G3485' => 'eca', 'ECA238G4653' => 'eca', 'ECA246G3405' => 'eca', 'EL10Ac6g14913' => 'bvu', 'EL10Ac9g22469' => 'bvu', 'Eucgr.B02472' => 'egr', 'Eucgr.J00948' => 'egr', 'FAN11G1933' => 'fan', 'FAN11G2704' => 'fan', 'FAN11G3753' => 'fan', 'FAN16G0706' => 'fan', 'FAN16G2054' => 'fan', 'FAN16G2791' => 'fan', 'FAN19G0942' => 'fan', 'FAN21G0076' => 'fan', 'FAN21G3350' => 'fan', 'FAN21G4030' => 'fan', 'FAN23G0891' => 'fan', 'FAN25G0620' => 'fan', 'FAN25G0759' => 'fan', 'FAN25G2815' => 'fan', 'FAN25G2967' => 'fan', 'FAN26G2185' => 'fan', 'FAN28G0335' => 'fan', 'FvH4_1g13730' => 'fve', 'FvH4_3g33170' => 'fve', 'FvH4_3g33180' => 'fve', 'FvH4_3g33190' => 'fve', 'FvH4_3g33240' => 'fve', 'Glyma.01G177000' => 'gma', 'Glyma.11G065800' => 'gma', 'Glyma.11G153587' => 'gma', 'Glyma.12G071600' => 'gma', 'Glyma.13G328400' => 'gma', 'Gohir.A03G161350' => 'ghi', 'Gohir.A07G116400' => 'ghi', 'Gohir.A11G186000' => 'ghi', 'Gohir.D07G120800' => 'ghi', 'Gohir.D11G192600' => 'ghi', 'Gorai.001G130200' => 'gra', 'Gorai.007G205600' => 'gra', 'GSVIVG01019005001' => 'vvi', 'GSVIVG01025139001' => 'vvi', 'HanXRQChr03g0071451' => 'han', 'HanXRQChr06g0170171' => 'han', 'HanXRQChr07g0190491' => 'han', 'HanXRQChr13g0404461' => 'han', 'Haze_15119' => 'cav', 'Haze_23907' => 'cav', 'Haze_23908' => 'cav', 'Hma1.2p1_0071F.1_g038040' => 'hma', 'Hma1.2p1_0568F.1_g180210' => 'hma', 'Hma1.2p1_0905F.1_g235320' => 'hma', 'Hma1.2p1_1228F.1_g268600' => 'hma', 'HPP92_014258' => 'vpl', 'HPP92_021307' => 'vpl', 'Lalb_Chr01g0004171' => 'lal', 'Lalb_Chr05g0212941' => 'lal', 'Lalb_Chr09g0322571' => 'lal', 'Lalb_Chr14g0374791' => 'lal', 'Lalb_Chr22g0350181' => 'lal', 'Lj2A1035T49' => 'lonja', 'Lj2C448T6' => 'lonja', 'Lj2g0000276' => 'lja', 'Lj3g0006595' => 'lja', 'Lj3g0013428' => 'lja', 'Lsat_1_v5_gn_2_76801' => 'lsa', 'Lsat_1_v5_gn_2_77901' => 'lsa', 'Lsat_1_v5_gn_3_78340' => 'lsa', 'Lsat_1_v5_gn_6_47021' => 'lsa', 'Manes.11G141600' => 'mes', 'Manes.12G089864' => 'mes', 'Manes.13G137200' => 'mes', 'MBI14_g19545_MAGBIO' => 'mbi', 'MBI16_g37295_MAGBIO' => 'mbi', 'MD02G1152000' => 'mdo', 'MD03G1105100' => 'mdo', 'MD11G1130400' => 'mdo', 'MD15G1266400' => 'mdo', 'Medtr2g093350' => 'mtr', 'Medtr2g093390' => 'mtr', 'Medtr2g093410' => 'mtr', 'Medtr2g093520' => 'mtr', 'Medtr2g093550' => 'mtr', 'Medtr2g093590' => 'mtr', 'Medtr2g093620' => 'mtr', 'Medtr2g093630' => 'mtr', 'Medtr4g060780' => 'mtr', 'Medtr5g019780' => 'mtr', 'MELO3C007813.2' => 'cme', 'MELO3C025750.2' => 'cme', 'Migut.D02185' => 'egut', 'Migut.H00185' => 'egut', 'Migut.N02619' => 'egut', 'MSTRG.18636' => 'ama', 'Nitab4.5_0000106g0050' => 'nta', 'Nitab4.5_0000196g0010' => 'nta', 'Nitab4.5_0000196g0020' => 'nta', 'Nitab4.5_0001279g0150' => 'nta', 'Nitab4.5_0001802g0100' => 'nta', 'Nitab4.5_0002128g0030' => 'nta', 'Nitab4.5_0002129g0100' => 'nta', 'Nn1g02542' => 'nnu', 'Nn1g02543' => 'nnu', 'Nn1g05077' => 'nnu', 'Nn2g10684' => 'nnu', 'Nn2g13012' => 'nnu', 'Nn4g24405' => 'nnu', 'Nn5g29533' => 'nnu', 'Oeu005907.1' => 'oeu', 'Oeu021563.1' => 'oeu', 'Oeu031890.1' => 'oeu', 'Oeu036289.1' => 'oeu', 'Oeu059105.2' => 'oeu', 'Os03g0197300' => 'osa', 'Os03g0336100' => 'osa', 'Peaxi162Scf00101g00910' => 'pax', 'Peaxi162Scf00205g00011' => 'pax', 'Peaxi162Scf00389g00093' => 'pax', 'Peaxi162Scf00427g00512' => 'pax', 'Peaxi162Scf00476g00220' => 'pax', 'Peaxi162Scf00476g00223' => 'pax', 'Peaxi162Scf00476g00315' => 'pax', 'Peaxi162Scf00476g00321' => 'pax', 'PGR102G3185' => 'pgr', 'PGR119G1372' => 'pgr', 'PGSC0003DMG400003374' => 'stu', 'PGSC0003DMG400007501' => 'stu', 'PGSC0003DMG400007502' => 'stu', 'PGSC0003DMG400012661' => 'stu', 'PGSC0003DMG400020917' => 'stu', 'PGSC0003DMG400027378' => 'stu', 'PGSC0003DMG401007500' => 'stu', 'PGSC0003DMG402007500' => 'stu', 'Phvul.002G027900' => 'pvu', 'Phvul.005G137200' => 'pvu', 'Phvul.011G072800' => 'pvu', 'Potri.001G259208' => 'ptr', 'Potri.007G029100' => 'ptr', 'Potri.009G054700' => 'ptr', 'Prupe.1G032200' => 'ppe', 'Prupe.6G095000' => 'ppe', 'Prupe.7G151000' => 'ppe', 'Psat0s137g0280' => 'psa', 'Psat2g161120' => 'psa', 'Psat5g277440' => 'psa', 'PSO063G6855' => 'pso', 'PSO170G3836' => 'pso', 'QL01p037284' => 'qlo', 'QL06p045400' => 'qlo', 'RcHm_v2.0_Chr2g0102141' => 'rch', 'RcHm_v2.0_Chr5g0060491' => 'rch', 'RcHm_v2.0_Chr5g0060501' => 'rch', 'RcHm_v2.0_Chr5g0060531' => 'rch', 'RcHm_v2.0_Chr5g0060591' => 'rch', 'Rhsim01G0219300' => 'rsi', 'Rhsim01G0219400' => 'rsi', 'Rhsim01G0219500' => 'rsi', 'Rhsim01G0219600' => 'rsi', 'Rhsim01G0219700' => 'rsi', 'Rhsim01G0219800' => 'rsi', 'Rhsim01G0219900' => 'rsi', 'Rhsim01G0220000' => 'rsi', 'Rhsim08G0112800' => 'rsi', 'Rhsim09G0035200' => 'rsi', 'Rhsim09G0035300' => 'rsi', 'Rhsim09G0035400' => 'rsi', 'Rhsim13G0092600' => 'rsi', 'Sabra05G0103400' => 'sbr', 'Sabra09G0040000' => 'sbr', 'SalBow5G5464' => 'sbo', 'Sc06g0010510' => 'sci', 'Sc16g0000950' => 'sci', 'Sed0004107' => 'sed', 'Sed0006496' => 'sed', 'SEGI_13794' => 'sgi', 'SEGI_19513' => 'sgi', 'SGA_v2.0_scaffold2G00910' => 'sas', 'SGA_v2.0_scaffold33G13385' => 'sas', 'SGA_v2.0_scaffold61G21168' => 'sas', 'SHI06059' => 'shi', 'SHI08678' => 'shi', 'SMO137G0028' => 'smo', 'SMO141G0312' => 'smo', 'SMO351G0425' => 'smo', 'SMO364G0856' => 'smo', 'Solyc02g085590.4' => 'sly', 'Solyc03g044210.4' => 'sly', 'Solyc06g075260.3' => 'sly', 'Solyc06g075270.4' => 'sly', 'Solyc06g075280.3' => 'sly', 'Solyc06g075290.4' => 'sly', 'Solyc06g075300.3' => 'sly', 'Solyc06g075320.3' => 'sly', 'Solyc11g072380.2' => 'sly', 'Sopen02g030260' => 'spe', 'Sopen03g008250' => 'spe', 'Sopen06g031650' => 'spe', 'Sopen06g031660' => 'spe', 'Sopen06g031670' => 'spe', 'Sopen06g031690' => 'spe', 'Sopen06g031700' => 'spe', 'Sopen06g031720' => 'spe', 'Sopen11g030030' => 'spe', 'Sp3g31990' => 'spa', 'Sp4g11320' => 'spa', 'Sp7g34360' => 'spa', 'TAR369G0446' => 'tar', 'TAR381G1082' => 'tar', 'TAR623G0167' => 'tar', 'TAR623G0459' => 'tar', 'THA.LOC104800613' => 'tha', 'THA.LOC104807543' => 'tha', 'THA.LOC104819798' => 'tha', 'Thecc.01G039500' => 'tca', 'Thecc.09G260000' => 'tca', 'Thhalv10017921m.g' => 'esa', 'Thhalv10024697m.g' => 'esa', 'TPR.G11484' => 'tpr', 'TPR.G11569' => 'tpr', 'TPR.G14921' => 'tpr', 'TPR.G18814' => 'tpr', 'TPR.G27035' => 'tpr', 'TWI31G0073' => 'twi', 'TWI53G1751' => 'twi', 'TWI79G1599' => 'twi', 'unitig_0.g1037' => 'ugi', 'unitig_52.g17593' => 'ugi', 'vmacro03174' => 'vma', 'vmacro14457' => 'vma', 'vmacro14458' => 'vma', 'vmacro14459' => 'vma', 'vmacro14460' => 'vma', 'vmacro14461' => 'vma', 'vmacro17861' => 'vma', 'VMungo1127G0357' => 'vmu', 'Zm00001eb016090' => 'zma', 'Zm00001eb401000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001788' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001788' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001788' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001788' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151