Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '369', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p07000' => 'bna', 'Aa31sc138G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3604' => 'aag', 'Actinidia04856' => 'ach', 'Actinidia23362' => 'ach', 'Actinidia23787' => 'ach', 'Actinidia30021' => 'ach', 'Actinidia34550' => 'ach', 'Actinidia35016' => 'ach', 'Actinidia35917' => 'ach', 'Actinidia39912' => 'ach', 'Ah.04g155610' => 'amhyb', 'Ah.11g051250' => 'amhyb', 'Ah.13g077740' => 'amhyb', 'AL3G41270' => 'aly', 'Aqoxy2G03963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10UC8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3VVE5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94SQQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C45H87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D00LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVWC4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9J2XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU9W9A' => 'arhy', 'AT3G25400' => 'ath', 'ATR0111G003' => 'atr', 'ATR0686G066' => 'atr', 'ATR0736G020' => 'atr', 'ATR0752G024' => 'atr', 'ATR0752G186' => 'atr', 'ATR0752G209' => 'atr', 'Atru.chr3.1870' => 'acertr', 'Atru.chr4.2021' => 'acertr', 'AUR62002158' => 'cqu', 'AUR62008133' => 'cqu', 'AUR62008134' => 'cqu', 'AUR62018511' => 'cqu', 'AUR62020908' => 'cqu', 'AUR62028715' => 'cqu', 'AUR62028716' => 'cqu', 'BcaB06g26741' => 'bca', 'BcaC06g35808' => 'bca', 'BolC7t41528H' => 'bol', 'BraA07t28490Z' => 'bra', 'C07p10630' => 'bna', 'CAN.G220.13' => 'can', 'CAN.G587.17' => 'can', 'CAN.G681.12' => 'can', 'CAN.G874.25' => 'can', 'CANSAT01G1613' => 'cansat', 'CANSAT01G2595' => 'cansat', 'CARHR101700' => 'chi', 'Carub.0003s2571' => 'cru', 'Ca_07398_v3' => 'car', 'Cc01_g16250' => 'ccan', 'Cc03_g05720' => 'ccan', 'Cc03_g09690' => 'ccan', 'Cc04_g14850' => 'ccan', 'CDE02G2693' => 'cde', 'CDE05G3111' => 'cde', 'CDE08G0909' => 'cde', 'CDE09G0246' => 'cde', 'Cfa008682' => 'cfa', 'Cfa010335' => 'cfa', 'Cfa014723' => 'cfa', 'Cfa019287' => 'cfa', 'Ciclev10006144m.g' => 'ccl', 'Ciclev10022875m.g' => 'ccl', 'Ciclev10032689m.g' => 'ccl', 'CiPaw.01G110600' => 'cil', 'CiPaw.01G182200' => 'cil', 'CiPaw.11G049000' => 'cil', 'CiPaw.13G054300' => 'cil', 'CiPaw.14G043200' => 'cil', 'ClCG05G004240' => 'cla', 'ClCG06G015900' => 'cla', 'ClCG07G015510' => 'cla', 'ClCG09G008270' => 'cla', 'COL.COLO4_08683' => 'col', 'COL.COLO4_09311' => 'col', 'COL.COLO4_15911' => 'col', 'Cpa.g.c46494' => 'cpa', 'Cpa.g.sc8.83' => 'cpa', 'Cre16.g686552' => 'cre', 'CsaV3_1G002650' => 'csa', 'CsaV3_3G011970' => 'csa', 'CsaV3_4G003130' => 'csa', 'CsaV3_7G026770' => 'csa', 'CSS0001245' => 'camsi', 'CSS0007550' => 'camsi', 'CSS0014689' => 'camsi', 'CSS0018292' => 'camsi', 'CSS0018679' => 'camsi', 'CSS0028959' => 'camsi', 'CSS0035492' => 'camsi', 'CSS0048622' => 'camsi', 'DCAR_018629' => 'dca', 'DCAR_027475' => 'dca', 'Dinv10676' => 'din', 'Dinv12800' => 'din', 'Dinv27067' => 'din', 'Dinv27166' => 'din', 'Dinv28816' => 'din', 'Duzib084G0053' => 'dzi', 'Duzib133G1413' => 'dzi', 'Duzib138G1318' => 'dzi', 'Duzib151G0053' => 'dzi', 'Duzib151G0428' => 'dzi', 'Duzib211G0212' => 'dzi', 'Duzib212G0040' => 'dzi', 'ECA232G1147' => 'eca', 'ECA238G1289' => 'eca', 'ECA247G1002' => 'eca', 'EL10Ac3g04987' => 'bvu', 'EL10Ac3g07416' => 'bvu', 'EL10Ac5g10643' => 'bvu', 'EL10Ac5g11081' => 'bvu', 'Eucgr.H00497' => 'egr', 'Eucgr.H03027' => 'egr', 'Eucgr.K02094' => 'egr', 'Eucgr.K02095' => 'egr', 'Eucgr.K02096' => 'egr', 'Eucgr.K02495' => 'egr', 'FAN08G2776' => 'fan', 'FAN12G4317' => 'fan', 'FAN13G0282' => 'fan', 'FAN15G2941' => 'fan', 'FAN17G0636' => 'fan', 'FAN18G2148' => 'fan', 'FAN22G1625' => 'fan', 'FAN24G1585' => 'fan', 'FAN24G1916' => 'fan', 'FAN27G0822' => 'fan', 'FvH4_2g17930' => 'fve', 'FvH4_4g03950' => 'fve', 'FvH4_5g14400' => 'fve', 'Glyma.03G089400' => 'gma', 'Glyma.04G133300' => 'gma', 'Glyma.05G023900' => 'gma', 'Glyma.05G101400' => 'gma', 'Glyma.06G197800' => 'gma', 'Glyma.08G345000' => 'gma', 'Glyma.16G083500' => 'gma', 'Gohir.A02G016000' => 'ghi', 'Gohir.A07G069800' => 'ghi', 'Gohir.A07G090500' => 'ghi', 'Gohir.A07G197000' => 'ghi', 'Gohir.A10G110000' => 'ghi', 'Gohir.A11G141900' => 'ghi', 'Gohir.D02G017400' => 'ghi', 'Gohir.D07G074500' => 'ghi', 'Gohir.D07G095200' => 'ghi', 'Gohir.D10G155900' => 'ghi', 'Gohir.D11G148200' => 'ghi', 'Gorai.001G078700' => 'gra', 'Gorai.001G102500' => 'gra', 'Gorai.001G228800' => 'gra', 'Gorai.005G021300' => 'gra', 'Gorai.007G158900' => 'gra', 'Gorai.011G176000' => 'gra', 'GSVIVG01006254001' => 'vvi', 'GSVIVG01007940001' => 'vvi', 'GSVIVG01027846001' => 'vvi', 'GSVIVG01031629001' => 'vvi', 'HanXRQChr01g0013881' => 'han', 'HanXRQChr05g0157151' => 'han', 'HanXRQChr07g0188351' => 'han', 'HanXRQChr14g0436731' => 'han', 'Haze_03307' => 'cav', 'Haze_07669' => 'cav', 'Haze_11407' => 'cav', 'Haze_11701' => 'cav', 'Hma1.2p1_0060F.1_g033410' => 'hma', 'Hma1.2p1_0112F.1_g054240' => 'hma', 'Hma1.2p1_0161F.1_g071300' => 'hma', 'Hma1.2p1_0349F.1_g132220' => 'hma', 'Hma1.2p1_0781F.1_g216890' => 'hma', 'HPP92_005132' => 'vpl', 'HPP92_020213' => 'vpl', 'HPP92_020233' => 'vpl', 'HPP92_020235' => 'vpl', 'HPP92_022216' => 'vpl', 'HPP92_022222' => 'vpl', 'Hund02791' => 'sun', 'Hund03052' => 'sun', 'Hund09842' => 'sun', 'Hund11904' => 'sun', 'Hund18990' => 'sun', 'Hund24448' => 'sun', 'Lalb_Chr03g0041171' => 'lal', 'Lalb_Chr19g0126091' => 'lal', 'Lj1C100G3' => 'lonja', 'Lj1g0003961' => 'lja', 'Lj2A1118G68' => 'lonja', 'Lj4g0016554' => 'lja', 'Lj5A106T76' => 'lonja', 'Lsat_1_v5_gn_2_49221' => 'lsa', 'Lsat_1_v5_gn_5_21660' => 'lsa', 'Lsat_1_v5_gn_9_16160' => 'lsa', 'Lsat_1_v5_gn_9_61240' => 'lsa', 'Manes.03G162800' => 'mes', 'Manes.06G088400' => 'mes', 'Manes.12G052700' => 'mes', 'Manes.13G053600' => 'mes', 'Manes.14G082700' => 'mes', 'Manes.15G042700' => 'mes', 'Mapoly0107s0039' => 'mpo', 'MBI07_g03821_MAGBIO' => 'mbi', 'MBI07_g31093_MAGBIO' => 'mbi', 'MBI10_g13799_MAGBIO' => 'mbi', 'MBI16_g17094_MAGBIO' => 'mbi', 'MCO01G219' => 'mco', 'MD04G1024800' => 'mdo', 'MD04G1025100' => 'mdo', 'MD04G1025300' => 'mdo', 'MD05G1163300' => 'mdo', 'MD06G1198900' => 'mdo', 'MD10G1153100' => 'mdo', 'MD14G1206300' => 'mdo', 'MD16G1221200' => 'mdo', 'Medtr7g052230' => 'mtr', 'MELO3C006410.2' => 'cme', 'MELO3C017201.2' => 'cme', 'MELO3C017733.2' => 'cme', 'MELO3C018993.2' => 'cme', 'MELO3C021137.2' => 'cme', 'Migut.D02465' => 'egut', 'Migut.L00263' => 'egut', 'MSTRG.20996' => 'ama', 'MSTRG.4145' => 'ama', 'MSTRG.4276' => 'ama', 'MSTRG.4446' => 'ama', 'Nitab4.5_0000044g0490' => 'nta', 'Nitab4.5_0000309g0060' => 'nta', 'Nitab4.5_0000309g0080' => 'nta', 'Nitab4.5_0000542g0030' => 'nta', 'Nitab4.5_0000596g0150' => 'nta', 'Nitab4.5_0002463g0010' => 'nta', 'Nitab4.5_0003021g0060' => 'nta', 'Nitab4.5_0004393g0010' => 'nta', 'Nitab4.5_0006673g0120' => 'nta', 'Nn1g02887' => 'nnu', 'Nn1g08028' => 'nnu', 'Nn3g17369' => 'nnu', 'Nn3g19705' => 'nnu', 'Nn4g23319' => 'nnu', 'Oeu005342.1' => 'oeu', 'Oeu034294.1' => 'oeu', 'Oeu047267.1' => 'oeu', 'Oeu053352.1' => 'oeu', 'Oeu055238.1' => 'oeu', 'Oeu055240.1' => 'oeu', 'Oeu064663.1' => 'oeu', 'Os02g0479300' => 'osa', 'Os04g0346800' => 'osa', 'Os04g0515400' => 'osa', 'Peaxi162Scf00013g00048' => 'pax', 'Peaxi162Scf00286g00644' => 'pax', 'Peaxi162Scf00392g00728' => 'pax', 'Peaxi162Scf01242g00133' => 'pax', 'Peaxi162Scf01242g00142' => 'pax', 'PGR044G1413' => 'pgr', 'PGR044G1647' => 'pgr', 'PGR083G2654' => 'pgr', 'PGR089G0002' => 'pgr', 'PGR142G3829' => 'pgr', 'PGSC0003DMG400016605' => 'stu', 'PGSC0003DMG400017214' => 'stu', 'PGSC0003DMG400020112' => 'stu', 'PGSC0003DMG400033050' => 'stu', 'Phvul.003G187033' => 'pvu', 'Phvul.003G187100' => 'pvu', 'Phvul.008G137600' => 'pvu', 'Phvul.010G031100' => 'pvu', 'Phvul.L001765' => 'pvu', 'Potri.002G235000' => 'ptr', 'Potri.002G250000' => 'ptr', 'Potri.008G168700' => 'ptr', 'Potri.010G069700' => 'ptr', 'Potri.014G148200' => 'ptr', 'Pp3c15_18090' => 'ppa', 'Pp3c9_22140' => 'ppa', 'PRCOL_00004568' => 'pco', 'Prupe.1G041600' => 'ppe', 'Prupe.5G199700' => 'ppe', 'Prupe.5G202000' => 'ppe', 'Prupe.8G191900' => 'ppe', 'Psat3g151360' => 'psa', 'PSO017G6762' => 'pso', 'PSO675G0349' => 'pso', 'PSO675G6188' => 'pso', 'PSO675G8592' => 'pso', 'QL06p018664' => 'qlo', 'QL06p028190' => 'qlo', 'QL09p045894' => 'qlo', 'QL10p018485' => 'qlo', 'QL10p018506' => 'qlo', 'RcHm_v2.0_Chr4g0394191' => 'rch', 'RcHm_v2.0_Chr4g0411401' => 'rch', 'RcHm_v2.0_Chr6g0283171' => 'rch', 'RcHm_v2.0_Chr7g0182261' => 'rch', 'Rhsim01G0249000' => 'rsi', 'Rhsim01G0277300' => 'rsi', 'Rhsim02G0040700' => 'rsi', 'Rhsim02G0058000' => 'rsi', 'Rhsim03G0229100' => 'rsi', 'Rhsim05G0016400' => 'rsi', 'Rhsim05G0217900' => 'rsi', 'Rhsim12G0153300' => 'rsi', 'Rhsim13G0052200' => 'rsi', 'Sabra02G0190400' => 'sbr', 'Sabra10G0037400' => 'sbr', 'Sabra14G0111800' => 'sbr', 'SalBow6G4294' => 'sbo', 'Sc04g0002950' => 'sci', 'Sc05g0001780' => 'sci', 'Sc13g0005820' => 'sci', 'Sc19g0007490' => 'sci', 'Sed0008260' => 'sed', 'Sed0011963' => 'sed', 'Sed0013223' => 'sed', 'Sed0016148' => 'sed', 'Sed0025214' => 'sed', 'Sed0027693' => 'sed', 'SEGI_07141' => 'sgi', 'SEGI_13188' => 'sgi', 'SEGI_33888' => 'sgi', 'SEGI_38274' => 'sgi', 'SGA_v2.0_scaffold114G31945' => 'sas', 'SMO146G0365' => 'smo', 'SMO239G0187' => 'smo', 'Solyc06g069640.3' => 'sly', 'Solyc06g083130.4' => 'sly', 'Solyc09g090300.3' => 'sly', 'Solyc09g097930.4' => 'sly', 'Sopen06g026940' => 'spe', 'Sopen06g034520' => 'spe', 'Sopen09g033200' => 'spe', 'Sopen09g035870' => 'spe', 'Sp3g22940' => 'spa', 'TAR362G0374' => 'tar', 'TAR362G0626' => 'tar', 'TAR365G0303' => 'tar', 'TAR371G1104' => 'tar', 'TAR636G0542' => 'tar', 'TAR636G2102' => 'tar', 'THA.LOC104808635' => 'tha', 'THA.LOC104808811' => 'tha', 'THA.LOC104826650' => 'tha', 'Thecc.01G212200' => 'tca', 'Thecc.03G095700' => 'tca', 'Thecc.04G188900' => 'tca', 'Thecc.04G258400' => 'tca', 'Thhalv10002718m.g' => 'esa', 'TPR.G26830' => 'tpr', 'TWI36G0560' => 'twi', 'TWI73G0484' => 'twi', 'TWI81G0377' => 'twi', 'unitig_26.g9424' => 'ugi', 'unitig_746.g26598' => 'ugi', 'vmacro14696' => 'vma', 'vmacro15454' => 'vma', 'vmacro16520' => 'vma', 'VMungo0331G1434' => 'vmu', 'VMungo1215G0775' => 'vmu', 'VMungo1383G1926' => 'vmu', 'Zm00001eb077570' => 'zma', 'Zm00001eb241110' => 'zma', 'Zm00001eb426620' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001757', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001757' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '369', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001757' ) ), 'genes' => array( 'A07p07000' => 'bna', 'Aa31sc138G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3604' => 'aag', 'Actinidia04856' => 'ach', 'Actinidia23362' => 'ach', 'Actinidia23787' => 'ach', 'Actinidia30021' => 'ach', 'Actinidia34550' => 'ach', 'Actinidia35016' => 'ach', 'Actinidia35917' => 'ach', 'Actinidia39912' => 'ach', 'Ah.04g155610' => 'amhyb', 'Ah.11g051250' => 'amhyb', 'Ah.13g077740' => 'amhyb', 'AL3G41270' => 'aly', 'Aqoxy2G03963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10UC8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3VVE5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94SQQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C45H87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D00LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVWC4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9J2XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU9W9A' => 'arhy', 'AT3G25400' => 'ath', 'ATR0111G003' => 'atr', 'ATR0686G066' => 'atr', 'ATR0736G020' => 'atr', 'ATR0752G024' => 'atr', 'ATR0752G186' => 'atr', 'ATR0752G209' => 'atr', 'Atru.chr3.1870' => 'acertr', 'Atru.chr4.2021' => 'acertr', 'AUR62002158' => 'cqu', 'AUR62008133' => 'cqu', 'AUR62008134' => 'cqu', 'AUR62018511' => 'cqu', 'AUR62020908' => 'cqu', 'AUR62028715' => 'cqu', 'AUR62028716' => 'cqu', 'BcaB06g26741' => 'bca', 'BcaC06g35808' => 'bca', 'BolC7t41528H' => 'bol', 'BraA07t28490Z' => 'bra', 'C07p10630' => 'bna', 'CAN.G220.13' => 'can', 'CAN.G587.17' => 'can', 'CAN.G681.12' => 'can', 'CAN.G874.25' => 'can', 'CANSAT01G1613' => 'cansat', 'CANSAT01G2595' => 'cansat', 'CARHR101700' => 'chi', 'Carub.0003s2571' => 'cru', 'Ca_07398_v3' => 'car', 'Cc01_g16250' => 'ccan', 'Cc03_g05720' => 'ccan', 'Cc03_g09690' => 'ccan', 'Cc04_g14850' => 'ccan', 'CDE02G2693' => 'cde', 'CDE05G3111' => 'cde', 'CDE08G0909' => 'cde', 'CDE09G0246' => 'cde', 'Cfa008682' => 'cfa', 'Cfa010335' => 'cfa', 'Cfa014723' => 'cfa', 'Cfa019287' => 'cfa', 'Ciclev10006144m.g' => 'ccl', 'Ciclev10022875m.g' => 'ccl', 'Ciclev10032689m.g' => 'ccl', 'CiPaw.01G110600' => 'cil', 'CiPaw.01G182200' => 'cil', 'CiPaw.11G049000' => 'cil', 'CiPaw.13G054300' => 'cil', 'CiPaw.14G043200' => 'cil', 'ClCG05G004240' => 'cla', 'ClCG06G015900' => 'cla', 'ClCG07G015510' => 'cla', 'ClCG09G008270' => 'cla', 'COL.COLO4_08683' => 'col', 'COL.COLO4_09311' => 'col', 'COL.COLO4_15911' => 'col', 'Cpa.g.c46494' => 'cpa', 'Cpa.g.sc8.83' => 'cpa', 'Cre16.g686552' => 'cre', 'CsaV3_1G002650' => 'csa', 'CsaV3_3G011970' => 'csa', 'CsaV3_4G003130' => 'csa', 'CsaV3_7G026770' => 'csa', 'CSS0001245' => 'camsi', 'CSS0007550' => 'camsi', 'CSS0014689' => 'camsi', 'CSS0018292' => 'camsi', 'CSS0018679' => 'camsi', 'CSS0028959' => 'camsi', 'CSS0035492' => 'camsi', 'CSS0048622' => 'camsi', 'DCAR_018629' => 'dca', 'DCAR_027475' => 'dca', 'Dinv10676' => 'din', 'Dinv12800' => 'din', 'Dinv27067' => 'din', 'Dinv27166' => 'din', 'Dinv28816' => 'din', 'Duzib084G0053' => 'dzi', 'Duzib133G1413' => 'dzi', 'Duzib138G1318' => 'dzi', 'Duzib151G0053' => 'dzi', 'Duzib151G0428' => 'dzi', 'Duzib211G0212' => 'dzi', 'Duzib212G0040' => 'dzi', 'ECA232G1147' => 'eca', 'ECA238G1289' => 'eca', 'ECA247G1002' => 'eca', 'EL10Ac3g04987' => 'bvu', 'EL10Ac3g07416' => 'bvu', 'EL10Ac5g10643' => 'bvu', 'EL10Ac5g11081' => 'bvu', 'Eucgr.H00497' => 'egr', 'Eucgr.H03027' => 'egr', 'Eucgr.K02094' => 'egr', 'Eucgr.K02095' => 'egr', 'Eucgr.K02096' => 'egr', 'Eucgr.K02495' => 'egr', 'FAN08G2776' => 'fan', 'FAN12G4317' => 'fan', 'FAN13G0282' => 'fan', 'FAN15G2941' => 'fan', 'FAN17G0636' => 'fan', 'FAN18G2148' => 'fan', 'FAN22G1625' => 'fan', 'FAN24G1585' => 'fan', 'FAN24G1916' => 'fan', 'FAN27G0822' => 'fan', 'FvH4_2g17930' => 'fve', 'FvH4_4g03950' => 'fve', 'FvH4_5g14400' => 'fve', 'Glyma.03G089400' => 'gma', 'Glyma.04G133300' => 'gma', 'Glyma.05G023900' => 'gma', 'Glyma.05G101400' => 'gma', 'Glyma.06G197800' => 'gma', 'Glyma.08G345000' => 'gma', 'Glyma.16G083500' => 'gma', 'Gohir.A02G016000' => 'ghi', 'Gohir.A07G069800' => 'ghi', 'Gohir.A07G090500' => 'ghi', 'Gohir.A07G197000' => 'ghi', 'Gohir.A10G110000' => 'ghi', 'Gohir.A11G141900' => 'ghi', 'Gohir.D02G017400' => 'ghi', 'Gohir.D07G074500' => 'ghi', 'Gohir.D07G095200' => 'ghi', 'Gohir.D10G155900' => 'ghi', 'Gohir.D11G148200' => 'ghi', 'Gorai.001G078700' => 'gra', 'Gorai.001G102500' => 'gra', 'Gorai.001G228800' => 'gra', 'Gorai.005G021300' => 'gra', 'Gorai.007G158900' => 'gra', 'Gorai.011G176000' => 'gra', 'GSVIVG01006254001' => 'vvi', 'GSVIVG01007940001' => 'vvi', 'GSVIVG01027846001' => 'vvi', 'GSVIVG01031629001' => 'vvi', 'HanXRQChr01g0013881' => 'han', 'HanXRQChr05g0157151' => 'han', 'HanXRQChr07g0188351' => 'han', 'HanXRQChr14g0436731' => 'han', 'Haze_03307' => 'cav', 'Haze_07669' => 'cav', 'Haze_11407' => 'cav', 'Haze_11701' => 'cav', 'Hma1.2p1_0060F.1_g033410' => 'hma', 'Hma1.2p1_0112F.1_g054240' => 'hma', 'Hma1.2p1_0161F.1_g071300' => 'hma', 'Hma1.2p1_0349F.1_g132220' => 'hma', 'Hma1.2p1_0781F.1_g216890' => 'hma', 'HPP92_005132' => 'vpl', 'HPP92_020213' => 'vpl', 'HPP92_020233' => 'vpl', 'HPP92_020235' => 'vpl', 'HPP92_022216' => 'vpl', 'HPP92_022222' => 'vpl', 'Hund02791' => 'sun', 'Hund03052' => 'sun', 'Hund09842' => 'sun', 'Hund11904' => 'sun', 'Hund18990' => 'sun', 'Hund24448' => 'sun', 'Lalb_Chr03g0041171' => 'lal', 'Lalb_Chr19g0126091' => 'lal', 'Lj1C100G3' => 'lonja', 'Lj1g0003961' => 'lja', 'Lj2A1118G68' => 'lonja', 'Lj4g0016554' => 'lja', 'Lj5A106T76' => 'lonja', 'Lsat_1_v5_gn_2_49221' => 'lsa', 'Lsat_1_v5_gn_5_21660' => 'lsa', 'Lsat_1_v5_gn_9_16160' => 'lsa', 'Lsat_1_v5_gn_9_61240' => 'lsa', 'Manes.03G162800' => 'mes', 'Manes.06G088400' => 'mes', 'Manes.12G052700' => 'mes', 'Manes.13G053600' => 'mes', 'Manes.14G082700' => 'mes', 'Manes.15G042700' => 'mes', 'Mapoly0107s0039' => 'mpo', 'MBI07_g03821_MAGBIO' => 'mbi', 'MBI07_g31093_MAGBIO' => 'mbi', 'MBI10_g13799_MAGBIO' => 'mbi', 'MBI16_g17094_MAGBIO' => 'mbi', 'MCO01G219' => 'mco', 'MD04G1024800' => 'mdo', 'MD04G1025100' => 'mdo', 'MD04G1025300' => 'mdo', 'MD05G1163300' => 'mdo', 'MD06G1198900' => 'mdo', 'MD10G1153100' => 'mdo', 'MD14G1206300' => 'mdo', 'MD16G1221200' => 'mdo', 'Medtr7g052230' => 'mtr', 'MELO3C006410.2' => 'cme', 'MELO3C017201.2' => 'cme', 'MELO3C017733.2' => 'cme', 'MELO3C018993.2' => 'cme', 'MELO3C021137.2' => 'cme', 'Migut.D02465' => 'egut', 'Migut.L00263' => 'egut', 'MSTRG.20996' => 'ama', 'MSTRG.4145' => 'ama', 'MSTRG.4276' => 'ama', 'MSTRG.4446' => 'ama', 'Nitab4.5_0000044g0490' => 'nta', 'Nitab4.5_0000309g0060' => 'nta', 'Nitab4.5_0000309g0080' => 'nta', 'Nitab4.5_0000542g0030' => 'nta', 'Nitab4.5_0000596g0150' => 'nta', 'Nitab4.5_0002463g0010' => 'nta', 'Nitab4.5_0003021g0060' => 'nta', 'Nitab4.5_0004393g0010' => 'nta', 'Nitab4.5_0006673g0120' => 'nta', 'Nn1g02887' => 'nnu', 'Nn1g08028' => 'nnu', 'Nn3g17369' => 'nnu', 'Nn3g19705' => 'nnu', 'Nn4g23319' => 'nnu', 'Oeu005342.1' => 'oeu', 'Oeu034294.1' => 'oeu', 'Oeu047267.1' => 'oeu', 'Oeu053352.1' => 'oeu', 'Oeu055238.1' => 'oeu', 'Oeu055240.1' => 'oeu', 'Oeu064663.1' => 'oeu', 'Os02g0479300' => 'osa', 'Os04g0346800' => 'osa', 'Os04g0515400' => 'osa', 'Peaxi162Scf00013g00048' => 'pax', 'Peaxi162Scf00286g00644' => 'pax', 'Peaxi162Scf00392g00728' => 'pax', 'Peaxi162Scf01242g00133' => 'pax', 'Peaxi162Scf01242g00142' => 'pax', 'PGR044G1413' => 'pgr', 'PGR044G1647' => 'pgr', 'PGR083G2654' => 'pgr', 'PGR089G0002' => 'pgr', 'PGR142G3829' => 'pgr', 'PGSC0003DMG400016605' => 'stu', 'PGSC0003DMG400017214' => 'stu', 'PGSC0003DMG400020112' => 'stu', 'PGSC0003DMG400033050' => 'stu', 'Phvul.003G187033' => 'pvu', 'Phvul.003G187100' => 'pvu', 'Phvul.008G137600' => 'pvu', 'Phvul.010G031100' => 'pvu', 'Phvul.L001765' => 'pvu', 'Potri.002G235000' => 'ptr', 'Potri.002G250000' => 'ptr', 'Potri.008G168700' => 'ptr', 'Potri.010G069700' => 'ptr', 'Potri.014G148200' => 'ptr', 'Pp3c15_18090' => 'ppa', 'Pp3c9_22140' => 'ppa', 'PRCOL_00004568' => 'pco', 'Prupe.1G041600' => 'ppe', 'Prupe.5G199700' => 'ppe', 'Prupe.5G202000' => 'ppe', 'Prupe.8G191900' => 'ppe', 'Psat3g151360' => 'psa', 'PSO017G6762' => 'pso', 'PSO675G0349' => 'pso', 'PSO675G6188' => 'pso', 'PSO675G8592' => 'pso', 'QL06p018664' => 'qlo', 'QL06p028190' => 'qlo', 'QL09p045894' => 'qlo', 'QL10p018485' => 'qlo', 'QL10p018506' => 'qlo', 'RcHm_v2.0_Chr4g0394191' => 'rch', 'RcHm_v2.0_Chr4g0411401' => 'rch', 'RcHm_v2.0_Chr6g0283171' => 'rch', 'RcHm_v2.0_Chr7g0182261' => 'rch', 'Rhsim01G0249000' => 'rsi', 'Rhsim01G0277300' => 'rsi', 'Rhsim02G0040700' => 'rsi', 'Rhsim02G0058000' => 'rsi', 'Rhsim03G0229100' => 'rsi', 'Rhsim05G0016400' => 'rsi', 'Rhsim05G0217900' => 'rsi', 'Rhsim12G0153300' => 'rsi', 'Rhsim13G0052200' => 'rsi', 'Sabra02G0190400' => 'sbr', 'Sabra10G0037400' => 'sbr', 'Sabra14G0111800' => 'sbr', 'SalBow6G4294' => 'sbo', 'Sc04g0002950' => 'sci', 'Sc05g0001780' => 'sci', 'Sc13g0005820' => 'sci', 'Sc19g0007490' => 'sci', 'Sed0008260' => 'sed', 'Sed0011963' => 'sed', 'Sed0013223' => 'sed', 'Sed0016148' => 'sed', 'Sed0025214' => 'sed', 'Sed0027693' => 'sed', 'SEGI_07141' => 'sgi', 'SEGI_13188' => 'sgi', 'SEGI_33888' => 'sgi', 'SEGI_38274' => 'sgi', 'SGA_v2.0_scaffold114G31945' => 'sas', 'SMO146G0365' => 'smo', 'SMO239G0187' => 'smo', 'Solyc06g069640.3' => 'sly', 'Solyc06g083130.4' => 'sly', 'Solyc09g090300.3' => 'sly', 'Solyc09g097930.4' => 'sly', 'Sopen06g026940' => 'spe', 'Sopen06g034520' => 'spe', 'Sopen09g033200' => 'spe', 'Sopen09g035870' => 'spe', 'Sp3g22940' => 'spa', 'TAR362G0374' => 'tar', 'TAR362G0626' => 'tar', 'TAR365G0303' => 'tar', 'TAR371G1104' => 'tar', 'TAR636G0542' => 'tar', 'TAR636G2102' => 'tar', 'THA.LOC104808635' => 'tha', 'THA.LOC104808811' => 'tha', 'THA.LOC104826650' => 'tha', 'Thecc.01G212200' => 'tca', 'Thecc.03G095700' => 'tca', 'Thecc.04G188900' => 'tca', 'Thecc.04G258400' => 'tca', 'Thhalv10002718m.g' => 'esa', 'TPR.G26830' => 'tpr', 'TWI36G0560' => 'twi', 'TWI73G0484' => 'twi', 'TWI81G0377' => 'twi', 'unitig_26.g9424' => 'ugi', 'unitig_746.g26598' => 'ugi', 'vmacro14696' => 'vma', 'vmacro15454' => 'vma', 'vmacro16520' => 'vma', 'VMungo0331G1434' => 'vmu', 'VMungo1215G0775' => 'vmu', 'VMungo1383G1926' => 'vmu', 'Zm00001eb077570' => 'zma', 'Zm00001eb241110' => 'zma', 'Zm00001eb426620' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001757' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001757' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001757' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001757' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '369', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p07000' => 'bna', 'Aa31sc138G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3604' => 'aag', 'Actinidia04856' => 'ach', 'Actinidia23362' => 'ach', 'Actinidia23787' => 'ach', 'Actinidia30021' => 'ach', 'Actinidia34550' => 'ach', 'Actinidia35016' => 'ach', 'Actinidia35917' => 'ach', 'Actinidia39912' => 'ach', 'Ah.04g155610' => 'amhyb', 'Ah.11g051250' => 'amhyb', 'Ah.13g077740' => 'amhyb', 'AL3G41270' => 'aly', 'Aqoxy2G03963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10UC8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3VVE5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94SQQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C45H87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D00LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVWC4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9J2XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU9W9A' => 'arhy', 'AT3G25400' => 'ath', 'ATR0111G003' => 'atr', 'ATR0686G066' => 'atr', 'ATR0736G020' => 'atr', 'ATR0752G024' => 'atr', 'ATR0752G186' => 'atr', 'ATR0752G209' => 'atr', 'Atru.chr3.1870' => 'acertr', 'Atru.chr4.2021' => 'acertr', 'AUR62002158' => 'cqu', 'AUR62008133' => 'cqu', 'AUR62008134' => 'cqu', 'AUR62018511' => 'cqu', 'AUR62020908' => 'cqu', 'AUR62028715' => 'cqu', 'AUR62028716' => 'cqu', 'BcaB06g26741' => 'bca', 'BcaC06g35808' => 'bca', 'BolC7t41528H' => 'bol', 'BraA07t28490Z' => 'bra', 'C07p10630' => 'bna', 'CAN.G220.13' => 'can', 'CAN.G587.17' => 'can', 'CAN.G681.12' => 'can', 'CAN.G874.25' => 'can', 'CANSAT01G1613' => 'cansat', 'CANSAT01G2595' => 'cansat', 'CARHR101700' => 'chi', 'Carub.0003s2571' => 'cru', 'Ca_07398_v3' => 'car', 'Cc01_g16250' => 'ccan', 'Cc03_g05720' => 'ccan', 'Cc03_g09690' => 'ccan', 'Cc04_g14850' => 'ccan', 'CDE02G2693' => 'cde', 'CDE05G3111' => 'cde', 'CDE08G0909' => 'cde', 'CDE09G0246' => 'cde', 'Cfa008682' => 'cfa', 'Cfa010335' => 'cfa', 'Cfa014723' => 'cfa', 'Cfa019287' => 'cfa', 'Ciclev10006144m.g' => 'ccl', 'Ciclev10022875m.g' => 'ccl', 'Ciclev10032689m.g' => 'ccl', 'CiPaw.01G110600' => 'cil', 'CiPaw.01G182200' => 'cil', 'CiPaw.11G049000' => 'cil', 'CiPaw.13G054300' => 'cil', 'CiPaw.14G043200' => 'cil', 'ClCG05G004240' => 'cla', 'ClCG06G015900' => 'cla', 'ClCG07G015510' => 'cla', 'ClCG09G008270' => 'cla', 'COL.COLO4_08683' => 'col', 'COL.COLO4_09311' => 'col', 'COL.COLO4_15911' => 'col', 'Cpa.g.c46494' => 'cpa', 'Cpa.g.sc8.83' => 'cpa', 'Cre16.g686552' => 'cre', 'CsaV3_1G002650' => 'csa', 'CsaV3_3G011970' => 'csa', 'CsaV3_4G003130' => 'csa', 'CsaV3_7G026770' => 'csa', 'CSS0001245' => 'camsi', 'CSS0007550' => 'camsi', 'CSS0014689' => 'camsi', 'CSS0018292' => 'camsi', 'CSS0018679' => 'camsi', 'CSS0028959' => 'camsi', 'CSS0035492' => 'camsi', 'CSS0048622' => 'camsi', 'DCAR_018629' => 'dca', 'DCAR_027475' => 'dca', 'Dinv10676' => 'din', 'Dinv12800' => 'din', 'Dinv27067' => 'din', 'Dinv27166' => 'din', 'Dinv28816' => 'din', 'Duzib084G0053' => 'dzi', 'Duzib133G1413' => 'dzi', 'Duzib138G1318' => 'dzi', 'Duzib151G0053' => 'dzi', 'Duzib151G0428' => 'dzi', 'Duzib211G0212' => 'dzi', 'Duzib212G0040' => 'dzi', 'ECA232G1147' => 'eca', 'ECA238G1289' => 'eca', 'ECA247G1002' => 'eca', 'EL10Ac3g04987' => 'bvu', 'EL10Ac3g07416' => 'bvu', 'EL10Ac5g10643' => 'bvu', 'EL10Ac5g11081' => 'bvu', 'Eucgr.H00497' => 'egr', 'Eucgr.H03027' => 'egr', 'Eucgr.K02094' => 'egr', 'Eucgr.K02095' => 'egr', 'Eucgr.K02096' => 'egr', 'Eucgr.K02495' => 'egr', 'FAN08G2776' => 'fan', 'FAN12G4317' => 'fan', 'FAN13G0282' => 'fan', 'FAN15G2941' => 'fan', 'FAN17G0636' => 'fan', 'FAN18G2148' => 'fan', 'FAN22G1625' => 'fan', 'FAN24G1585' => 'fan', 'FAN24G1916' => 'fan', 'FAN27G0822' => 'fan', 'FvH4_2g17930' => 'fve', 'FvH4_4g03950' => 'fve', 'FvH4_5g14400' => 'fve', 'Glyma.03G089400' => 'gma', 'Glyma.04G133300' => 'gma', 'Glyma.05G023900' => 'gma', 'Glyma.05G101400' => 'gma', 'Glyma.06G197800' => 'gma', 'Glyma.08G345000' => 'gma', 'Glyma.16G083500' => 'gma', 'Gohir.A02G016000' => 'ghi', 'Gohir.A07G069800' => 'ghi', 'Gohir.A07G090500' => 'ghi', 'Gohir.A07G197000' => 'ghi', 'Gohir.A10G110000' => 'ghi', 'Gohir.A11G141900' => 'ghi', 'Gohir.D02G017400' => 'ghi', 'Gohir.D07G074500' => 'ghi', 'Gohir.D07G095200' => 'ghi', 'Gohir.D10G155900' => 'ghi', 'Gohir.D11G148200' => 'ghi', 'Gorai.001G078700' => 'gra', 'Gorai.001G102500' => 'gra', 'Gorai.001G228800' => 'gra', 'Gorai.005G021300' => 'gra', 'Gorai.007G158900' => 'gra', 'Gorai.011G176000' => 'gra', 'GSVIVG01006254001' => 'vvi', 'GSVIVG01007940001' => 'vvi', 'GSVIVG01027846001' => 'vvi', 'GSVIVG01031629001' => 'vvi', 'HanXRQChr01g0013881' => 'han', 'HanXRQChr05g0157151' => 'han', 'HanXRQChr07g0188351' => 'han', 'HanXRQChr14g0436731' => 'han', 'Haze_03307' => 'cav', 'Haze_07669' => 'cav', 'Haze_11407' => 'cav', 'Haze_11701' => 'cav', 'Hma1.2p1_0060F.1_g033410' => 'hma', 'Hma1.2p1_0112F.1_g054240' => 'hma', 'Hma1.2p1_0161F.1_g071300' => 'hma', 'Hma1.2p1_0349F.1_g132220' => 'hma', 'Hma1.2p1_0781F.1_g216890' => 'hma', 'HPP92_005132' => 'vpl', 'HPP92_020213' => 'vpl', 'HPP92_020233' => 'vpl', 'HPP92_020235' => 'vpl', 'HPP92_022216' => 'vpl', 'HPP92_022222' => 'vpl', 'Hund02791' => 'sun', 'Hund03052' => 'sun', 'Hund09842' => 'sun', 'Hund11904' => 'sun', 'Hund18990' => 'sun', 'Hund24448' => 'sun', 'Lalb_Chr03g0041171' => 'lal', 'Lalb_Chr19g0126091' => 'lal', 'Lj1C100G3' => 'lonja', 'Lj1g0003961' => 'lja', 'Lj2A1118G68' => 'lonja', 'Lj4g0016554' => 'lja', 'Lj5A106T76' => 'lonja', 'Lsat_1_v5_gn_2_49221' => 'lsa', 'Lsat_1_v5_gn_5_21660' => 'lsa', 'Lsat_1_v5_gn_9_16160' => 'lsa', 'Lsat_1_v5_gn_9_61240' => 'lsa', 'Manes.03G162800' => 'mes', 'Manes.06G088400' => 'mes', 'Manes.12G052700' => 'mes', 'Manes.13G053600' => 'mes', 'Manes.14G082700' => 'mes', 'Manes.15G042700' => 'mes', 'Mapoly0107s0039' => 'mpo', 'MBI07_g03821_MAGBIO' => 'mbi', 'MBI07_g31093_MAGBIO' => 'mbi', 'MBI10_g13799_MAGBIO' => 'mbi', 'MBI16_g17094_MAGBIO' => 'mbi', 'MCO01G219' => 'mco', 'MD04G1024800' => 'mdo', 'MD04G1025100' => 'mdo', 'MD04G1025300' => 'mdo', 'MD05G1163300' => 'mdo', 'MD06G1198900' => 'mdo', 'MD10G1153100' => 'mdo', 'MD14G1206300' => 'mdo', 'MD16G1221200' => 'mdo', 'Medtr7g052230' => 'mtr', 'MELO3C006410.2' => 'cme', 'MELO3C017201.2' => 'cme', 'MELO3C017733.2' => 'cme', 'MELO3C018993.2' => 'cme', 'MELO3C021137.2' => 'cme', 'Migut.D02465' => 'egut', 'Migut.L00263' => 'egut', 'MSTRG.20996' => 'ama', 'MSTRG.4145' => 'ama', 'MSTRG.4276' => 'ama', 'MSTRG.4446' => 'ama', 'Nitab4.5_0000044g0490' => 'nta', 'Nitab4.5_0000309g0060' => 'nta', 'Nitab4.5_0000309g0080' => 'nta', 'Nitab4.5_0000542g0030' => 'nta', 'Nitab4.5_0000596g0150' => 'nta', 'Nitab4.5_0002463g0010' => 'nta', 'Nitab4.5_0003021g0060' => 'nta', 'Nitab4.5_0004393g0010' => 'nta', 'Nitab4.5_0006673g0120' => 'nta', 'Nn1g02887' => 'nnu', 'Nn1g08028' => 'nnu', 'Nn3g17369' => 'nnu', 'Nn3g19705' => 'nnu', 'Nn4g23319' => 'nnu', 'Oeu005342.1' => 'oeu', 'Oeu034294.1' => 'oeu', 'Oeu047267.1' => 'oeu', 'Oeu053352.1' => 'oeu', 'Oeu055238.1' => 'oeu', 'Oeu055240.1' => 'oeu', 'Oeu064663.1' => 'oeu', 'Os02g0479300' => 'osa', 'Os04g0346800' => 'osa', 'Os04g0515400' => 'osa', 'Peaxi162Scf00013g00048' => 'pax', 'Peaxi162Scf00286g00644' => 'pax', 'Peaxi162Scf00392g00728' => 'pax', 'Peaxi162Scf01242g00133' => 'pax', 'Peaxi162Scf01242g00142' => 'pax', 'PGR044G1413' => 'pgr', 'PGR044G1647' => 'pgr', 'PGR083G2654' => 'pgr', 'PGR089G0002' => 'pgr', 'PGR142G3829' => 'pgr', 'PGSC0003DMG400016605' => 'stu', 'PGSC0003DMG400017214' => 'stu', 'PGSC0003DMG400020112' => 'stu', 'PGSC0003DMG400033050' => 'stu', 'Phvul.003G187033' => 'pvu', 'Phvul.003G187100' => 'pvu', 'Phvul.008G137600' => 'pvu', 'Phvul.010G031100' => 'pvu', 'Phvul.L001765' => 'pvu', 'Potri.002G235000' => 'ptr', 'Potri.002G250000' => 'ptr', 'Potri.008G168700' => 'ptr', 'Potri.010G069700' => 'ptr', 'Potri.014G148200' => 'ptr', 'Pp3c15_18090' => 'ppa', 'Pp3c9_22140' => 'ppa', 'PRCOL_00004568' => 'pco', 'Prupe.1G041600' => 'ppe', 'Prupe.5G199700' => 'ppe', 'Prupe.5G202000' => 'ppe', 'Prupe.8G191900' => 'ppe', 'Psat3g151360' => 'psa', 'PSO017G6762' => 'pso', 'PSO675G0349' => 'pso', 'PSO675G6188' => 'pso', 'PSO675G8592' => 'pso', 'QL06p018664' => 'qlo', 'QL06p028190' => 'qlo', 'QL09p045894' => 'qlo', 'QL10p018485' => 'qlo', 'QL10p018506' => 'qlo', 'RcHm_v2.0_Chr4g0394191' => 'rch', 'RcHm_v2.0_Chr4g0411401' => 'rch', 'RcHm_v2.0_Chr6g0283171' => 'rch', 'RcHm_v2.0_Chr7g0182261' => 'rch', 'Rhsim01G0249000' => 'rsi', 'Rhsim01G0277300' => 'rsi', 'Rhsim02G0040700' => 'rsi', 'Rhsim02G0058000' => 'rsi', 'Rhsim03G0229100' => 'rsi', 'Rhsim05G0016400' => 'rsi', 'Rhsim05G0217900' => 'rsi', 'Rhsim12G0153300' => 'rsi', 'Rhsim13G0052200' => 'rsi', 'Sabra02G0190400' => 'sbr', 'Sabra10G0037400' => 'sbr', 'Sabra14G0111800' => 'sbr', 'SalBow6G4294' => 'sbo', 'Sc04g0002950' => 'sci', 'Sc05g0001780' => 'sci', 'Sc13g0005820' => 'sci', 'Sc19g0007490' => 'sci', 'Sed0008260' => 'sed', 'Sed0011963' => 'sed', 'Sed0013223' => 'sed', 'Sed0016148' => 'sed', 'Sed0025214' => 'sed', 'Sed0027693' => 'sed', 'SEGI_07141' => 'sgi', 'SEGI_13188' => 'sgi', 'SEGI_33888' => 'sgi', 'SEGI_38274' => 'sgi', 'SGA_v2.0_scaffold114G31945' => 'sas', 'SMO146G0365' => 'smo', 'SMO239G0187' => 'smo', 'Solyc06g069640.3' => 'sly', 'Solyc06g083130.4' => 'sly', 'Solyc09g090300.3' => 'sly', 'Solyc09g097930.4' => 'sly', 'Sopen06g026940' => 'spe', 'Sopen06g034520' => 'spe', 'Sopen09g033200' => 'spe', 'Sopen09g035870' => 'spe', 'Sp3g22940' => 'spa', 'TAR362G0374' => 'tar', 'TAR362G0626' => 'tar', 'TAR365G0303' => 'tar', 'TAR371G1104' => 'tar', 'TAR636G0542' => 'tar', 'TAR636G2102' => 'tar', 'THA.LOC104808635' => 'tha', 'THA.LOC104808811' => 'tha', 'THA.LOC104826650' => 'tha', 'Thecc.01G212200' => 'tca', 'Thecc.03G095700' => 'tca', 'Thecc.04G188900' => 'tca', 'Thecc.04G258400' => 'tca', 'Thhalv10002718m.g' => 'esa', 'TPR.G26830' => 'tpr', 'TWI36G0560' => 'twi', 'TWI73G0484' => 'twi', 'TWI81G0377' => 'twi', 'unitig_26.g9424' => 'ugi', 'unitig_746.g26598' => 'ugi', 'vmacro14696' => 'vma', 'vmacro15454' => 'vma', 'vmacro16520' => 'vma', 'VMungo0331G1434' => 'vmu', 'VMungo1215G0775' => 'vmu', 'VMungo1383G1926' => 'vmu', 'Zm00001eb077570' => 'zma', 'Zm00001eb241110' => 'zma', 'Zm00001eb426620' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001757', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001757' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '369', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001757' ) ), 'genes' => array( 'A07p07000' => 'bna', 'Aa31sc138G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3604' => 'aag', 'Actinidia04856' => 'ach', 'Actinidia23362' => 'ach', 'Actinidia23787' => 'ach', 'Actinidia30021' => 'ach', 'Actinidia34550' => 'ach', 'Actinidia35016' => 'ach', 'Actinidia35917' => 'ach', 'Actinidia39912' => 'ach', 'Ah.04g155610' => 'amhyb', 'Ah.11g051250' => 'amhyb', 'Ah.13g077740' => 'amhyb', 'AL3G41270' => 'aly', 'Aqoxy2G03963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10UC8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3VVE5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94SQQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C45H87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D00LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVWC4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9J2XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU9W9A' => 'arhy', 'AT3G25400' => 'ath', 'ATR0111G003' => 'atr', 'ATR0686G066' => 'atr', 'ATR0736G020' => 'atr', 'ATR0752G024' => 'atr', 'ATR0752G186' => 'atr', 'ATR0752G209' => 'atr', 'Atru.chr3.1870' => 'acertr', 'Atru.chr4.2021' => 'acertr', 'AUR62002158' => 'cqu', 'AUR62008133' => 'cqu', 'AUR62008134' => 'cqu', 'AUR62018511' => 'cqu', 'AUR62020908' => 'cqu', 'AUR62028715' => 'cqu', 'AUR62028716' => 'cqu', 'BcaB06g26741' => 'bca', 'BcaC06g35808' => 'bca', 'BolC7t41528H' => 'bol', 'BraA07t28490Z' => 'bra', 'C07p10630' => 'bna', 'CAN.G220.13' => 'can', 'CAN.G587.17' => 'can', 'CAN.G681.12' => 'can', 'CAN.G874.25' => 'can', 'CANSAT01G1613' => 'cansat', 'CANSAT01G2595' => 'cansat', 'CARHR101700' => 'chi', 'Carub.0003s2571' => 'cru', 'Ca_07398_v3' => 'car', 'Cc01_g16250' => 'ccan', 'Cc03_g05720' => 'ccan', 'Cc03_g09690' => 'ccan', 'Cc04_g14850' => 'ccan', 'CDE02G2693' => 'cde', 'CDE05G3111' => 'cde', 'CDE08G0909' => 'cde', 'CDE09G0246' => 'cde', 'Cfa008682' => 'cfa', 'Cfa010335' => 'cfa', 'Cfa014723' => 'cfa', 'Cfa019287' => 'cfa', 'Ciclev10006144m.g' => 'ccl', 'Ciclev10022875m.g' => 'ccl', 'Ciclev10032689m.g' => 'ccl', 'CiPaw.01G110600' => 'cil', 'CiPaw.01G182200' => 'cil', 'CiPaw.11G049000' => 'cil', 'CiPaw.13G054300' => 'cil', 'CiPaw.14G043200' => 'cil', 'ClCG05G004240' => 'cla', 'ClCG06G015900' => 'cla', 'ClCG07G015510' => 'cla', 'ClCG09G008270' => 'cla', 'COL.COLO4_08683' => 'col', 'COL.COLO4_09311' => 'col', 'COL.COLO4_15911' => 'col', 'Cpa.g.c46494' => 'cpa', 'Cpa.g.sc8.83' => 'cpa', 'Cre16.g686552' => 'cre', 'CsaV3_1G002650' => 'csa', 'CsaV3_3G011970' => 'csa', 'CsaV3_4G003130' => 'csa', 'CsaV3_7G026770' => 'csa', 'CSS0001245' => 'camsi', 'CSS0007550' => 'camsi', 'CSS0014689' => 'camsi', 'CSS0018292' => 'camsi', 'CSS0018679' => 'camsi', 'CSS0028959' => 'camsi', 'CSS0035492' => 'camsi', 'CSS0048622' => 'camsi', 'DCAR_018629' => 'dca', 'DCAR_027475' => 'dca', 'Dinv10676' => 'din', 'Dinv12800' => 'din', 'Dinv27067' => 'din', 'Dinv27166' => 'din', 'Dinv28816' => 'din', 'Duzib084G0053' => 'dzi', 'Duzib133G1413' => 'dzi', 'Duzib138G1318' => 'dzi', 'Duzib151G0053' => 'dzi', 'Duzib151G0428' => 'dzi', 'Duzib211G0212' => 'dzi', 'Duzib212G0040' => 'dzi', 'ECA232G1147' => 'eca', 'ECA238G1289' => 'eca', 'ECA247G1002' => 'eca', 'EL10Ac3g04987' => 'bvu', 'EL10Ac3g07416' => 'bvu', 'EL10Ac5g10643' => 'bvu', 'EL10Ac5g11081' => 'bvu', 'Eucgr.H00497' => 'egr', 'Eucgr.H03027' => 'egr', 'Eucgr.K02094' => 'egr', 'Eucgr.K02095' => 'egr', 'Eucgr.K02096' => 'egr', 'Eucgr.K02495' => 'egr', 'FAN08G2776' => 'fan', 'FAN12G4317' => 'fan', 'FAN13G0282' => 'fan', 'FAN15G2941' => 'fan', 'FAN17G0636' => 'fan', 'FAN18G2148' => 'fan', 'FAN22G1625' => 'fan', 'FAN24G1585' => 'fan', 'FAN24G1916' => 'fan', 'FAN27G0822' => 'fan', 'FvH4_2g17930' => 'fve', 'FvH4_4g03950' => 'fve', 'FvH4_5g14400' => 'fve', 'Glyma.03G089400' => 'gma', 'Glyma.04G133300' => 'gma', 'Glyma.05G023900' => 'gma', 'Glyma.05G101400' => 'gma', 'Glyma.06G197800' => 'gma', 'Glyma.08G345000' => 'gma', 'Glyma.16G083500' => 'gma', 'Gohir.A02G016000' => 'ghi', 'Gohir.A07G069800' => 'ghi', 'Gohir.A07G090500' => 'ghi', 'Gohir.A07G197000' => 'ghi', 'Gohir.A10G110000' => 'ghi', 'Gohir.A11G141900' => 'ghi', 'Gohir.D02G017400' => 'ghi', 'Gohir.D07G074500' => 'ghi', 'Gohir.D07G095200' => 'ghi', 'Gohir.D10G155900' => 'ghi', 'Gohir.D11G148200' => 'ghi', 'Gorai.001G078700' => 'gra', 'Gorai.001G102500' => 'gra', 'Gorai.001G228800' => 'gra', 'Gorai.005G021300' => 'gra', 'Gorai.007G158900' => 'gra', 'Gorai.011G176000' => 'gra', 'GSVIVG01006254001' => 'vvi', 'GSVIVG01007940001' => 'vvi', 'GSVIVG01027846001' => 'vvi', 'GSVIVG01031629001' => 'vvi', 'HanXRQChr01g0013881' => 'han', 'HanXRQChr05g0157151' => 'han', 'HanXRQChr07g0188351' => 'han', 'HanXRQChr14g0436731' => 'han', 'Haze_03307' => 'cav', 'Haze_07669' => 'cav', 'Haze_11407' => 'cav', 'Haze_11701' => 'cav', 'Hma1.2p1_0060F.1_g033410' => 'hma', 'Hma1.2p1_0112F.1_g054240' => 'hma', 'Hma1.2p1_0161F.1_g071300' => 'hma', 'Hma1.2p1_0349F.1_g132220' => 'hma', 'Hma1.2p1_0781F.1_g216890' => 'hma', 'HPP92_005132' => 'vpl', 'HPP92_020213' => 'vpl', 'HPP92_020233' => 'vpl', 'HPP92_020235' => 'vpl', 'HPP92_022216' => 'vpl', 'HPP92_022222' => 'vpl', 'Hund02791' => 'sun', 'Hund03052' => 'sun', 'Hund09842' => 'sun', 'Hund11904' => 'sun', 'Hund18990' => 'sun', 'Hund24448' => 'sun', 'Lalb_Chr03g0041171' => 'lal', 'Lalb_Chr19g0126091' => 'lal', 'Lj1C100G3' => 'lonja', 'Lj1g0003961' => 'lja', 'Lj2A1118G68' => 'lonja', 'Lj4g0016554' => 'lja', 'Lj5A106T76' => 'lonja', 'Lsat_1_v5_gn_2_49221' => 'lsa', 'Lsat_1_v5_gn_5_21660' => 'lsa', 'Lsat_1_v5_gn_9_16160' => 'lsa', 'Lsat_1_v5_gn_9_61240' => 'lsa', 'Manes.03G162800' => 'mes', 'Manes.06G088400' => 'mes', 'Manes.12G052700' => 'mes', 'Manes.13G053600' => 'mes', 'Manes.14G082700' => 'mes', 'Manes.15G042700' => 'mes', 'Mapoly0107s0039' => 'mpo', 'MBI07_g03821_MAGBIO' => 'mbi', 'MBI07_g31093_MAGBIO' => 'mbi', 'MBI10_g13799_MAGBIO' => 'mbi', 'MBI16_g17094_MAGBIO' => 'mbi', 'MCO01G219' => 'mco', 'MD04G1024800' => 'mdo', 'MD04G1025100' => 'mdo', 'MD04G1025300' => 'mdo', 'MD05G1163300' => 'mdo', 'MD06G1198900' => 'mdo', 'MD10G1153100' => 'mdo', 'MD14G1206300' => 'mdo', 'MD16G1221200' => 'mdo', 'Medtr7g052230' => 'mtr', 'MELO3C006410.2' => 'cme', 'MELO3C017201.2' => 'cme', 'MELO3C017733.2' => 'cme', 'MELO3C018993.2' => 'cme', 'MELO3C021137.2' => 'cme', 'Migut.D02465' => 'egut', 'Migut.L00263' => 'egut', 'MSTRG.20996' => 'ama', 'MSTRG.4145' => 'ama', 'MSTRG.4276' => 'ama', 'MSTRG.4446' => 'ama', 'Nitab4.5_0000044g0490' => 'nta', 'Nitab4.5_0000309g0060' => 'nta', 'Nitab4.5_0000309g0080' => 'nta', 'Nitab4.5_0000542g0030' => 'nta', 'Nitab4.5_0000596g0150' => 'nta', 'Nitab4.5_0002463g0010' => 'nta', 'Nitab4.5_0003021g0060' => 'nta', 'Nitab4.5_0004393g0010' => 'nta', 'Nitab4.5_0006673g0120' => 'nta', 'Nn1g02887' => 'nnu', 'Nn1g08028' => 'nnu', 'Nn3g17369' => 'nnu', 'Nn3g19705' => 'nnu', 'Nn4g23319' => 'nnu', 'Oeu005342.1' => 'oeu', 'Oeu034294.1' => 'oeu', 'Oeu047267.1' => 'oeu', 'Oeu053352.1' => 'oeu', 'Oeu055238.1' => 'oeu', 'Oeu055240.1' => 'oeu', 'Oeu064663.1' => 'oeu', 'Os02g0479300' => 'osa', 'Os04g0346800' => 'osa', 'Os04g0515400' => 'osa', 'Peaxi162Scf00013g00048' => 'pax', 'Peaxi162Scf00286g00644' => 'pax', 'Peaxi162Scf00392g00728' => 'pax', 'Peaxi162Scf01242g00133' => 'pax', 'Peaxi162Scf01242g00142' => 'pax', 'PGR044G1413' => 'pgr', 'PGR044G1647' => 'pgr', 'PGR083G2654' => 'pgr', 'PGR089G0002' => 'pgr', 'PGR142G3829' => 'pgr', 'PGSC0003DMG400016605' => 'stu', 'PGSC0003DMG400017214' => 'stu', 'PGSC0003DMG400020112' => 'stu', 'PGSC0003DMG400033050' => 'stu', 'Phvul.003G187033' => 'pvu', 'Phvul.003G187100' => 'pvu', 'Phvul.008G137600' => 'pvu', 'Phvul.010G031100' => 'pvu', 'Phvul.L001765' => 'pvu', 'Potri.002G235000' => 'ptr', 'Potri.002G250000' => 'ptr', 'Potri.008G168700' => 'ptr', 'Potri.010G069700' => 'ptr', 'Potri.014G148200' => 'ptr', 'Pp3c15_18090' => 'ppa', 'Pp3c9_22140' => 'ppa', 'PRCOL_00004568' => 'pco', 'Prupe.1G041600' => 'ppe', 'Prupe.5G199700' => 'ppe', 'Prupe.5G202000' => 'ppe', 'Prupe.8G191900' => 'ppe', 'Psat3g151360' => 'psa', 'PSO017G6762' => 'pso', 'PSO675G0349' => 'pso', 'PSO675G6188' => 'pso', 'PSO675G8592' => 'pso', 'QL06p018664' => 'qlo', 'QL06p028190' => 'qlo', 'QL09p045894' => 'qlo', 'QL10p018485' => 'qlo', 'QL10p018506' => 'qlo', 'RcHm_v2.0_Chr4g0394191' => 'rch', 'RcHm_v2.0_Chr4g0411401' => 'rch', 'RcHm_v2.0_Chr6g0283171' => 'rch', 'RcHm_v2.0_Chr7g0182261' => 'rch', 'Rhsim01G0249000' => 'rsi', 'Rhsim01G0277300' => 'rsi', 'Rhsim02G0040700' => 'rsi', 'Rhsim02G0058000' => 'rsi', 'Rhsim03G0229100' => 'rsi', 'Rhsim05G0016400' => 'rsi', 'Rhsim05G0217900' => 'rsi', 'Rhsim12G0153300' => 'rsi', 'Rhsim13G0052200' => 'rsi', 'Sabra02G0190400' => 'sbr', 'Sabra10G0037400' => 'sbr', 'Sabra14G0111800' => 'sbr', 'SalBow6G4294' => 'sbo', 'Sc04g0002950' => 'sci', 'Sc05g0001780' => 'sci', 'Sc13g0005820' => 'sci', 'Sc19g0007490' => 'sci', 'Sed0008260' => 'sed', 'Sed0011963' => 'sed', 'Sed0013223' => 'sed', 'Sed0016148' => 'sed', 'Sed0025214' => 'sed', 'Sed0027693' => 'sed', 'SEGI_07141' => 'sgi', 'SEGI_13188' => 'sgi', 'SEGI_33888' => 'sgi', 'SEGI_38274' => 'sgi', 'SGA_v2.0_scaffold114G31945' => 'sas', 'SMO146G0365' => 'smo', 'SMO239G0187' => 'smo', 'Solyc06g069640.3' => 'sly', 'Solyc06g083130.4' => 'sly', 'Solyc09g090300.3' => 'sly', 'Solyc09g097930.4' => 'sly', 'Sopen06g026940' => 'spe', 'Sopen06g034520' => 'spe', 'Sopen09g033200' => 'spe', 'Sopen09g035870' => 'spe', 'Sp3g22940' => 'spa', 'TAR362G0374' => 'tar', 'TAR362G0626' => 'tar', 'TAR365G0303' => 'tar', 'TAR371G1104' => 'tar', 'TAR636G0542' => 'tar', 'TAR636G2102' => 'tar', 'THA.LOC104808635' => 'tha', 'THA.LOC104808811' => 'tha', 'THA.LOC104826650' => 'tha', 'Thecc.01G212200' => 'tca', 'Thecc.03G095700' => 'tca', 'Thecc.04G188900' => 'tca', 'Thecc.04G258400' => 'tca', 'Thhalv10002718m.g' => 'esa', 'TPR.G26830' => 'tpr', 'TWI36G0560' => 'twi', 'TWI73G0484' => 'twi', 'TWI81G0377' => 'twi', 'unitig_26.g9424' => 'ugi', 'unitig_746.g26598' => 'ugi', 'vmacro14696' => 'vma', 'vmacro15454' => 'vma', 'vmacro16520' => 'vma', 'VMungo0331G1434' => 'vmu', 'VMungo1215G0775' => 'vmu', 'VMungo1383G1926' => 'vmu', 'Zm00001eb077570' => 'zma', 'Zm00001eb241110' => 'zma', 'Zm00001eb426620' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001757' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001757' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001757' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001757' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '369', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p07000' => 'bna', 'Aa31sc138G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3604' => 'aag', 'Actinidia04856' => 'ach', 'Actinidia23362' => 'ach', 'Actinidia23787' => 'ach', 'Actinidia30021' => 'ach', 'Actinidia34550' => 'ach', 'Actinidia35016' => 'ach', 'Actinidia35917' => 'ach', 'Actinidia39912' => 'ach', 'Ah.04g155610' => 'amhyb', 'Ah.11g051250' => 'amhyb', 'Ah.13g077740' => 'amhyb', 'AL3G41270' => 'aly', 'Aqoxy2G03963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10UC8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3VVE5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94SQQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C45H87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D00LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVWC4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9J2XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU9W9A' => 'arhy', 'AT3G25400' => 'ath', 'ATR0111G003' => 'atr', 'ATR0686G066' => 'atr', 'ATR0736G020' => 'atr', 'ATR0752G024' => 'atr', 'ATR0752G186' => 'atr', 'ATR0752G209' => 'atr', 'Atru.chr3.1870' => 'acertr', 'Atru.chr4.2021' => 'acertr', 'AUR62002158' => 'cqu', 'AUR62008133' => 'cqu', 'AUR62008134' => 'cqu', 'AUR62018511' => 'cqu', 'AUR62020908' => 'cqu', 'AUR62028715' => 'cqu', 'AUR62028716' => 'cqu', 'BcaB06g26741' => 'bca', 'BcaC06g35808' => 'bca', 'BolC7t41528H' => 'bol', 'BraA07t28490Z' => 'bra', 'C07p10630' => 'bna', 'CAN.G220.13' => 'can', 'CAN.G587.17' => 'can', 'CAN.G681.12' => 'can', 'CAN.G874.25' => 'can', 'CANSAT01G1613' => 'cansat', 'CANSAT01G2595' => 'cansat', 'CARHR101700' => 'chi', 'Carub.0003s2571' => 'cru', 'Ca_07398_v3' => 'car', 'Cc01_g16250' => 'ccan', 'Cc03_g05720' => 'ccan', 'Cc03_g09690' => 'ccan', 'Cc04_g14850' => 'ccan', 'CDE02G2693' => 'cde', 'CDE05G3111' => 'cde', 'CDE08G0909' => 'cde', 'CDE09G0246' => 'cde', 'Cfa008682' => 'cfa', 'Cfa010335' => 'cfa', 'Cfa014723' => 'cfa', 'Cfa019287' => 'cfa', 'Ciclev10006144m.g' => 'ccl', 'Ciclev10022875m.g' => 'ccl', 'Ciclev10032689m.g' => 'ccl', 'CiPaw.01G110600' => 'cil', 'CiPaw.01G182200' => 'cil', 'CiPaw.11G049000' => 'cil', 'CiPaw.13G054300' => 'cil', 'CiPaw.14G043200' => 'cil', 'ClCG05G004240' => 'cla', 'ClCG06G015900' => 'cla', 'ClCG07G015510' => 'cla', 'ClCG09G008270' => 'cla', 'COL.COLO4_08683' => 'col', 'COL.COLO4_09311' => 'col', 'COL.COLO4_15911' => 'col', 'Cpa.g.c46494' => 'cpa', 'Cpa.g.sc8.83' => 'cpa', 'Cre16.g686552' => 'cre', 'CsaV3_1G002650' => 'csa', 'CsaV3_3G011970' => 'csa', 'CsaV3_4G003130' => 'csa', 'CsaV3_7G026770' => 'csa', 'CSS0001245' => 'camsi', 'CSS0007550' => 'camsi', 'CSS0014689' => 'camsi', 'CSS0018292' => 'camsi', 'CSS0018679' => 'camsi', 'CSS0028959' => 'camsi', 'CSS0035492' => 'camsi', 'CSS0048622' => 'camsi', 'DCAR_018629' => 'dca', 'DCAR_027475' => 'dca', 'Dinv10676' => 'din', 'Dinv12800' => 'din', 'Dinv27067' => 'din', 'Dinv27166' => 'din', 'Dinv28816' => 'din', 'Duzib084G0053' => 'dzi', 'Duzib133G1413' => 'dzi', 'Duzib138G1318' => 'dzi', 'Duzib151G0053' => 'dzi', 'Duzib151G0428' => 'dzi', 'Duzib211G0212' => 'dzi', 'Duzib212G0040' => 'dzi', 'ECA232G1147' => 'eca', 'ECA238G1289' => 'eca', 'ECA247G1002' => 'eca', 'EL10Ac3g04987' => 'bvu', 'EL10Ac3g07416' => 'bvu', 'EL10Ac5g10643' => 'bvu', 'EL10Ac5g11081' => 'bvu', 'Eucgr.H00497' => 'egr', 'Eucgr.H03027' => 'egr', 'Eucgr.K02094' => 'egr', 'Eucgr.K02095' => 'egr', 'Eucgr.K02096' => 'egr', 'Eucgr.K02495' => 'egr', 'FAN08G2776' => 'fan', 'FAN12G4317' => 'fan', 'FAN13G0282' => 'fan', 'FAN15G2941' => 'fan', 'FAN17G0636' => 'fan', 'FAN18G2148' => 'fan', 'FAN22G1625' => 'fan', 'FAN24G1585' => 'fan', 'FAN24G1916' => 'fan', 'FAN27G0822' => 'fan', 'FvH4_2g17930' => 'fve', 'FvH4_4g03950' => 'fve', 'FvH4_5g14400' => 'fve', 'Glyma.03G089400' => 'gma', 'Glyma.04G133300' => 'gma', 'Glyma.05G023900' => 'gma', 'Glyma.05G101400' => 'gma', 'Glyma.06G197800' => 'gma', 'Glyma.08G345000' => 'gma', 'Glyma.16G083500' => 'gma', 'Gohir.A02G016000' => 'ghi', 'Gohir.A07G069800' => 'ghi', 'Gohir.A07G090500' => 'ghi', 'Gohir.A07G197000' => 'ghi', 'Gohir.A10G110000' => 'ghi', 'Gohir.A11G141900' => 'ghi', 'Gohir.D02G017400' => 'ghi', 'Gohir.D07G074500' => 'ghi', 'Gohir.D07G095200' => 'ghi', 'Gohir.D10G155900' => 'ghi', 'Gohir.D11G148200' => 'ghi', 'Gorai.001G078700' => 'gra', 'Gorai.001G102500' => 'gra', 'Gorai.001G228800' => 'gra', 'Gorai.005G021300' => 'gra', 'Gorai.007G158900' => 'gra', 'Gorai.011G176000' => 'gra', 'GSVIVG01006254001' => 'vvi', 'GSVIVG01007940001' => 'vvi', 'GSVIVG01027846001' => 'vvi', 'GSVIVG01031629001' => 'vvi', 'HanXRQChr01g0013881' => 'han', 'HanXRQChr05g0157151' => 'han', 'HanXRQChr07g0188351' => 'han', 'HanXRQChr14g0436731' => 'han', 'Haze_03307' => 'cav', 'Haze_07669' => 'cav', 'Haze_11407' => 'cav', 'Haze_11701' => 'cav', 'Hma1.2p1_0060F.1_g033410' => 'hma', 'Hma1.2p1_0112F.1_g054240' => 'hma', 'Hma1.2p1_0161F.1_g071300' => 'hma', 'Hma1.2p1_0349F.1_g132220' => 'hma', 'Hma1.2p1_0781F.1_g216890' => 'hma', 'HPP92_005132' => 'vpl', 'HPP92_020213' => 'vpl', 'HPP92_020233' => 'vpl', 'HPP92_020235' => 'vpl', 'HPP92_022216' => 'vpl', 'HPP92_022222' => 'vpl', 'Hund02791' => 'sun', 'Hund03052' => 'sun', 'Hund09842' => 'sun', 'Hund11904' => 'sun', 'Hund18990' => 'sun', 'Hund24448' => 'sun', 'Lalb_Chr03g0041171' => 'lal', 'Lalb_Chr19g0126091' => 'lal', 'Lj1C100G3' => 'lonja', 'Lj1g0003961' => 'lja', 'Lj2A1118G68' => 'lonja', 'Lj4g0016554' => 'lja', 'Lj5A106T76' => 'lonja', 'Lsat_1_v5_gn_2_49221' => 'lsa', 'Lsat_1_v5_gn_5_21660' => 'lsa', 'Lsat_1_v5_gn_9_16160' => 'lsa', 'Lsat_1_v5_gn_9_61240' => 'lsa', 'Manes.03G162800' => 'mes', 'Manes.06G088400' => 'mes', 'Manes.12G052700' => 'mes', 'Manes.13G053600' => 'mes', 'Manes.14G082700' => 'mes', 'Manes.15G042700' => 'mes', 'Mapoly0107s0039' => 'mpo', 'MBI07_g03821_MAGBIO' => 'mbi', 'MBI07_g31093_MAGBIO' => 'mbi', 'MBI10_g13799_MAGBIO' => 'mbi', 'MBI16_g17094_MAGBIO' => 'mbi', 'MCO01G219' => 'mco', 'MD04G1024800' => 'mdo', 'MD04G1025100' => 'mdo', 'MD04G1025300' => 'mdo', 'MD05G1163300' => 'mdo', 'MD06G1198900' => 'mdo', 'MD10G1153100' => 'mdo', 'MD14G1206300' => 'mdo', 'MD16G1221200' => 'mdo', 'Medtr7g052230' => 'mtr', 'MELO3C006410.2' => 'cme', 'MELO3C017201.2' => 'cme', 'MELO3C017733.2' => 'cme', 'MELO3C018993.2' => 'cme', 'MELO3C021137.2' => 'cme', 'Migut.D02465' => 'egut', 'Migut.L00263' => 'egut', 'MSTRG.20996' => 'ama', 'MSTRG.4145' => 'ama', 'MSTRG.4276' => 'ama', 'MSTRG.4446' => 'ama', 'Nitab4.5_0000044g0490' => 'nta', 'Nitab4.5_0000309g0060' => 'nta', 'Nitab4.5_0000309g0080' => 'nta', 'Nitab4.5_0000542g0030' => 'nta', 'Nitab4.5_0000596g0150' => 'nta', 'Nitab4.5_0002463g0010' => 'nta', 'Nitab4.5_0003021g0060' => 'nta', 'Nitab4.5_0004393g0010' => 'nta', 'Nitab4.5_0006673g0120' => 'nta', 'Nn1g02887' => 'nnu', 'Nn1g08028' => 'nnu', 'Nn3g17369' => 'nnu', 'Nn3g19705' => 'nnu', 'Nn4g23319' => 'nnu', 'Oeu005342.1' => 'oeu', 'Oeu034294.1' => 'oeu', 'Oeu047267.1' => 'oeu', 'Oeu053352.1' => 'oeu', 'Oeu055238.1' => 'oeu', 'Oeu055240.1' => 'oeu', 'Oeu064663.1' => 'oeu', 'Os02g0479300' => 'osa', 'Os04g0346800' => 'osa', 'Os04g0515400' => 'osa', 'Peaxi162Scf00013g00048' => 'pax', 'Peaxi162Scf00286g00644' => 'pax', 'Peaxi162Scf00392g00728' => 'pax', 'Peaxi162Scf01242g00133' => 'pax', 'Peaxi162Scf01242g00142' => 'pax', 'PGR044G1413' => 'pgr', 'PGR044G1647' => 'pgr', 'PGR083G2654' => 'pgr', 'PGR089G0002' => 'pgr', 'PGR142G3829' => 'pgr', 'PGSC0003DMG400016605' => 'stu', 'PGSC0003DMG400017214' => 'stu', 'PGSC0003DMG400020112' => 'stu', 'PGSC0003DMG400033050' => 'stu', 'Phvul.003G187033' => 'pvu', 'Phvul.003G187100' => 'pvu', 'Phvul.008G137600' => 'pvu', 'Phvul.010G031100' => 'pvu', 'Phvul.L001765' => 'pvu', 'Potri.002G235000' => 'ptr', 'Potri.002G250000' => 'ptr', 'Potri.008G168700' => 'ptr', 'Potri.010G069700' => 'ptr', 'Potri.014G148200' => 'ptr', 'Pp3c15_18090' => 'ppa', 'Pp3c9_22140' => 'ppa', 'PRCOL_00004568' => 'pco', 'Prupe.1G041600' => 'ppe', 'Prupe.5G199700' => 'ppe', 'Prupe.5G202000' => 'ppe', 'Prupe.8G191900' => 'ppe', 'Psat3g151360' => 'psa', 'PSO017G6762' => 'pso', 'PSO675G0349' => 'pso', 'PSO675G6188' => 'pso', 'PSO675G8592' => 'pso', 'QL06p018664' => 'qlo', 'QL06p028190' => 'qlo', 'QL09p045894' => 'qlo', 'QL10p018485' => 'qlo', 'QL10p018506' => 'qlo', 'RcHm_v2.0_Chr4g0394191' => 'rch', 'RcHm_v2.0_Chr4g0411401' => 'rch', 'RcHm_v2.0_Chr6g0283171' => 'rch', 'RcHm_v2.0_Chr7g0182261' => 'rch', 'Rhsim01G0249000' => 'rsi', 'Rhsim01G0277300' => 'rsi', 'Rhsim02G0040700' => 'rsi', 'Rhsim02G0058000' => 'rsi', 'Rhsim03G0229100' => 'rsi', 'Rhsim05G0016400' => 'rsi', 'Rhsim05G0217900' => 'rsi', 'Rhsim12G0153300' => 'rsi', 'Rhsim13G0052200' => 'rsi', 'Sabra02G0190400' => 'sbr', 'Sabra10G0037400' => 'sbr', 'Sabra14G0111800' => 'sbr', 'SalBow6G4294' => 'sbo', 'Sc04g0002950' => 'sci', 'Sc05g0001780' => 'sci', 'Sc13g0005820' => 'sci', 'Sc19g0007490' => 'sci', 'Sed0008260' => 'sed', 'Sed0011963' => 'sed', 'Sed0013223' => 'sed', 'Sed0016148' => 'sed', 'Sed0025214' => 'sed', 'Sed0027693' => 'sed', 'SEGI_07141' => 'sgi', 'SEGI_13188' => 'sgi', 'SEGI_33888' => 'sgi', 'SEGI_38274' => 'sgi', 'SGA_v2.0_scaffold114G31945' => 'sas', 'SMO146G0365' => 'smo', 'SMO239G0187' => 'smo', 'Solyc06g069640.3' => 'sly', 'Solyc06g083130.4' => 'sly', 'Solyc09g090300.3' => 'sly', 'Solyc09g097930.4' => 'sly', 'Sopen06g026940' => 'spe', 'Sopen06g034520' => 'spe', 'Sopen09g033200' => 'spe', 'Sopen09g035870' => 'spe', 'Sp3g22940' => 'spa', 'TAR362G0374' => 'tar', 'TAR362G0626' => 'tar', 'TAR365G0303' => 'tar', 'TAR371G1104' => 'tar', 'TAR636G0542' => 'tar', 'TAR636G2102' => 'tar', 'THA.LOC104808635' => 'tha', 'THA.LOC104808811' => 'tha', 'THA.LOC104826650' => 'tha', 'Thecc.01G212200' => 'tca', 'Thecc.03G095700' => 'tca', 'Thecc.04G188900' => 'tca', 'Thecc.04G258400' => 'tca', 'Thhalv10002718m.g' => 'esa', 'TPR.G26830' => 'tpr', 'TWI36G0560' => 'twi', 'TWI73G0484' => 'twi', 'TWI81G0377' => 'twi', 'unitig_26.g9424' => 'ugi', 'unitig_746.g26598' => 'ugi', 'vmacro14696' => 'vma', 'vmacro15454' => 'vma', 'vmacro16520' => 'vma', 'VMungo0331G1434' => 'vmu', 'VMungo1215G0775' => 'vmu', 'VMungo1383G1926' => 'vmu', 'Zm00001eb077570' => 'zma', 'Zm00001eb241110' => 'zma', 'Zm00001eb426620' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001757', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001757' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '369', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001757' ) ), 'genes' => array( 'A07p07000' => 'bna', 'Aa31sc138G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3604' => 'aag', 'Actinidia04856' => 'ach', 'Actinidia23362' => 'ach', 'Actinidia23787' => 'ach', 'Actinidia30021' => 'ach', 'Actinidia34550' => 'ach', 'Actinidia35016' => 'ach', 'Actinidia35917' => 'ach', 'Actinidia39912' => 'ach', 'Ah.04g155610' => 'amhyb', 'Ah.11g051250' => 'amhyb', 'Ah.13g077740' => 'amhyb', 'AL3G41270' => 'aly', 'Aqoxy2G03963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10UC8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3VVE5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94SQQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C45H87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D00LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVWC4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9J2XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU9W9A' => 'arhy', 'AT3G25400' => 'ath', 'ATR0111G003' => 'atr', 'ATR0686G066' => 'atr', 'ATR0736G020' => 'atr', 'ATR0752G024' => 'atr', 'ATR0752G186' => 'atr', 'ATR0752G209' => 'atr', 'Atru.chr3.1870' => 'acertr', 'Atru.chr4.2021' => 'acertr', 'AUR62002158' => 'cqu', 'AUR62008133' => 'cqu', 'AUR62008134' => 'cqu', 'AUR62018511' => 'cqu', 'AUR62020908' => 'cqu', 'AUR62028715' => 'cqu', 'AUR62028716' => 'cqu', 'BcaB06g26741' => 'bca', 'BcaC06g35808' => 'bca', 'BolC7t41528H' => 'bol', 'BraA07t28490Z' => 'bra', 'C07p10630' => 'bna', 'CAN.G220.13' => 'can', 'CAN.G587.17' => 'can', 'CAN.G681.12' => 'can', 'CAN.G874.25' => 'can', 'CANSAT01G1613' => 'cansat', 'CANSAT01G2595' => 'cansat', 'CARHR101700' => 'chi', 'Carub.0003s2571' => 'cru', 'Ca_07398_v3' => 'car', 'Cc01_g16250' => 'ccan', 'Cc03_g05720' => 'ccan', 'Cc03_g09690' => 'ccan', 'Cc04_g14850' => 'ccan', 'CDE02G2693' => 'cde', 'CDE05G3111' => 'cde', 'CDE08G0909' => 'cde', 'CDE09G0246' => 'cde', 'Cfa008682' => 'cfa', 'Cfa010335' => 'cfa', 'Cfa014723' => 'cfa', 'Cfa019287' => 'cfa', 'Ciclev10006144m.g' => 'ccl', 'Ciclev10022875m.g' => 'ccl', 'Ciclev10032689m.g' => 'ccl', 'CiPaw.01G110600' => 'cil', 'CiPaw.01G182200' => 'cil', 'CiPaw.11G049000' => 'cil', 'CiPaw.13G054300' => 'cil', 'CiPaw.14G043200' => 'cil', 'ClCG05G004240' => 'cla', 'ClCG06G015900' => 'cla', 'ClCG07G015510' => 'cla', 'ClCG09G008270' => 'cla', 'COL.COLO4_08683' => 'col', 'COL.COLO4_09311' => 'col', 'COL.COLO4_15911' => 'col', 'Cpa.g.c46494' => 'cpa', 'Cpa.g.sc8.83' => 'cpa', 'Cre16.g686552' => 'cre', 'CsaV3_1G002650' => 'csa', 'CsaV3_3G011970' => 'csa', 'CsaV3_4G003130' => 'csa', 'CsaV3_7G026770' => 'csa', 'CSS0001245' => 'camsi', 'CSS0007550' => 'camsi', 'CSS0014689' => 'camsi', 'CSS0018292' => 'camsi', 'CSS0018679' => 'camsi', 'CSS0028959' => 'camsi', 'CSS0035492' => 'camsi', 'CSS0048622' => 'camsi', 'DCAR_018629' => 'dca', 'DCAR_027475' => 'dca', 'Dinv10676' => 'din', 'Dinv12800' => 'din', 'Dinv27067' => 'din', 'Dinv27166' => 'din', 'Dinv28816' => 'din', 'Duzib084G0053' => 'dzi', 'Duzib133G1413' => 'dzi', 'Duzib138G1318' => 'dzi', 'Duzib151G0053' => 'dzi', 'Duzib151G0428' => 'dzi', 'Duzib211G0212' => 'dzi', 'Duzib212G0040' => 'dzi', 'ECA232G1147' => 'eca', 'ECA238G1289' => 'eca', 'ECA247G1002' => 'eca', 'EL10Ac3g04987' => 'bvu', 'EL10Ac3g07416' => 'bvu', 'EL10Ac5g10643' => 'bvu', 'EL10Ac5g11081' => 'bvu', 'Eucgr.H00497' => 'egr', 'Eucgr.H03027' => 'egr', 'Eucgr.K02094' => 'egr', 'Eucgr.K02095' => 'egr', 'Eucgr.K02096' => 'egr', 'Eucgr.K02495' => 'egr', 'FAN08G2776' => 'fan', 'FAN12G4317' => 'fan', 'FAN13G0282' => 'fan', 'FAN15G2941' => 'fan', 'FAN17G0636' => 'fan', 'FAN18G2148' => 'fan', 'FAN22G1625' => 'fan', 'FAN24G1585' => 'fan', 'FAN24G1916' => 'fan', 'FAN27G0822' => 'fan', 'FvH4_2g17930' => 'fve', 'FvH4_4g03950' => 'fve', 'FvH4_5g14400' => 'fve', 'Glyma.03G089400' => 'gma', 'Glyma.04G133300' => 'gma', 'Glyma.05G023900' => 'gma', 'Glyma.05G101400' => 'gma', 'Glyma.06G197800' => 'gma', 'Glyma.08G345000' => 'gma', 'Glyma.16G083500' => 'gma', 'Gohir.A02G016000' => 'ghi', 'Gohir.A07G069800' => 'ghi', 'Gohir.A07G090500' => 'ghi', 'Gohir.A07G197000' => 'ghi', 'Gohir.A10G110000' => 'ghi', 'Gohir.A11G141900' => 'ghi', 'Gohir.D02G017400' => 'ghi', 'Gohir.D07G074500' => 'ghi', 'Gohir.D07G095200' => 'ghi', 'Gohir.D10G155900' => 'ghi', 'Gohir.D11G148200' => 'ghi', 'Gorai.001G078700' => 'gra', 'Gorai.001G102500' => 'gra', 'Gorai.001G228800' => 'gra', 'Gorai.005G021300' => 'gra', 'Gorai.007G158900' => 'gra', 'Gorai.011G176000' => 'gra', 'GSVIVG01006254001' => 'vvi', 'GSVIVG01007940001' => 'vvi', 'GSVIVG01027846001' => 'vvi', 'GSVIVG01031629001' => 'vvi', 'HanXRQChr01g0013881' => 'han', 'HanXRQChr05g0157151' => 'han', 'HanXRQChr07g0188351' => 'han', 'HanXRQChr14g0436731' => 'han', 'Haze_03307' => 'cav', 'Haze_07669' => 'cav', 'Haze_11407' => 'cav', 'Haze_11701' => 'cav', 'Hma1.2p1_0060F.1_g033410' => 'hma', 'Hma1.2p1_0112F.1_g054240' => 'hma', 'Hma1.2p1_0161F.1_g071300' => 'hma', 'Hma1.2p1_0349F.1_g132220' => 'hma', 'Hma1.2p1_0781F.1_g216890' => 'hma', 'HPP92_005132' => 'vpl', 'HPP92_020213' => 'vpl', 'HPP92_020233' => 'vpl', 'HPP92_020235' => 'vpl', 'HPP92_022216' => 'vpl', 'HPP92_022222' => 'vpl', 'Hund02791' => 'sun', 'Hund03052' => 'sun', 'Hund09842' => 'sun', 'Hund11904' => 'sun', 'Hund18990' => 'sun', 'Hund24448' => 'sun', 'Lalb_Chr03g0041171' => 'lal', 'Lalb_Chr19g0126091' => 'lal', 'Lj1C100G3' => 'lonja', 'Lj1g0003961' => 'lja', 'Lj2A1118G68' => 'lonja', 'Lj4g0016554' => 'lja', 'Lj5A106T76' => 'lonja', 'Lsat_1_v5_gn_2_49221' => 'lsa', 'Lsat_1_v5_gn_5_21660' => 'lsa', 'Lsat_1_v5_gn_9_16160' => 'lsa', 'Lsat_1_v5_gn_9_61240' => 'lsa', 'Manes.03G162800' => 'mes', 'Manes.06G088400' => 'mes', 'Manes.12G052700' => 'mes', 'Manes.13G053600' => 'mes', 'Manes.14G082700' => 'mes', 'Manes.15G042700' => 'mes', 'Mapoly0107s0039' => 'mpo', 'MBI07_g03821_MAGBIO' => 'mbi', 'MBI07_g31093_MAGBIO' => 'mbi', 'MBI10_g13799_MAGBIO' => 'mbi', 'MBI16_g17094_MAGBIO' => 'mbi', 'MCO01G219' => 'mco', 'MD04G1024800' => 'mdo', 'MD04G1025100' => 'mdo', 'MD04G1025300' => 'mdo', 'MD05G1163300' => 'mdo', 'MD06G1198900' => 'mdo', 'MD10G1153100' => 'mdo', 'MD14G1206300' => 'mdo', 'MD16G1221200' => 'mdo', 'Medtr7g052230' => 'mtr', 'MELO3C006410.2' => 'cme', 'MELO3C017201.2' => 'cme', 'MELO3C017733.2' => 'cme', 'MELO3C018993.2' => 'cme', 'MELO3C021137.2' => 'cme', 'Migut.D02465' => 'egut', 'Migut.L00263' => 'egut', 'MSTRG.20996' => 'ama', 'MSTRG.4145' => 'ama', 'MSTRG.4276' => 'ama', 'MSTRG.4446' => 'ama', 'Nitab4.5_0000044g0490' => 'nta', 'Nitab4.5_0000309g0060' => 'nta', 'Nitab4.5_0000309g0080' => 'nta', 'Nitab4.5_0000542g0030' => 'nta', 'Nitab4.5_0000596g0150' => 'nta', 'Nitab4.5_0002463g0010' => 'nta', 'Nitab4.5_0003021g0060' => 'nta', 'Nitab4.5_0004393g0010' => 'nta', 'Nitab4.5_0006673g0120' => 'nta', 'Nn1g02887' => 'nnu', 'Nn1g08028' => 'nnu', 'Nn3g17369' => 'nnu', 'Nn3g19705' => 'nnu', 'Nn4g23319' => 'nnu', 'Oeu005342.1' => 'oeu', 'Oeu034294.1' => 'oeu', 'Oeu047267.1' => 'oeu', 'Oeu053352.1' => 'oeu', 'Oeu055238.1' => 'oeu', 'Oeu055240.1' => 'oeu', 'Oeu064663.1' => 'oeu', 'Os02g0479300' => 'osa', 'Os04g0346800' => 'osa', 'Os04g0515400' => 'osa', 'Peaxi162Scf00013g00048' => 'pax', 'Peaxi162Scf00286g00644' => 'pax', 'Peaxi162Scf00392g00728' => 'pax', 'Peaxi162Scf01242g00133' => 'pax', 'Peaxi162Scf01242g00142' => 'pax', 'PGR044G1413' => 'pgr', 'PGR044G1647' => 'pgr', 'PGR083G2654' => 'pgr', 'PGR089G0002' => 'pgr', 'PGR142G3829' => 'pgr', 'PGSC0003DMG400016605' => 'stu', 'PGSC0003DMG400017214' => 'stu', 'PGSC0003DMG400020112' => 'stu', 'PGSC0003DMG400033050' => 'stu', 'Phvul.003G187033' => 'pvu', 'Phvul.003G187100' => 'pvu', 'Phvul.008G137600' => 'pvu', 'Phvul.010G031100' => 'pvu', 'Phvul.L001765' => 'pvu', 'Potri.002G235000' => 'ptr', 'Potri.002G250000' => 'ptr', 'Potri.008G168700' => 'ptr', 'Potri.010G069700' => 'ptr', 'Potri.014G148200' => 'ptr', 'Pp3c15_18090' => 'ppa', 'Pp3c9_22140' => 'ppa', 'PRCOL_00004568' => 'pco', 'Prupe.1G041600' => 'ppe', 'Prupe.5G199700' => 'ppe', 'Prupe.5G202000' => 'ppe', 'Prupe.8G191900' => 'ppe', 'Psat3g151360' => 'psa', 'PSO017G6762' => 'pso', 'PSO675G0349' => 'pso', 'PSO675G6188' => 'pso', 'PSO675G8592' => 'pso', 'QL06p018664' => 'qlo', 'QL06p028190' => 'qlo', 'QL09p045894' => 'qlo', 'QL10p018485' => 'qlo', 'QL10p018506' => 'qlo', 'RcHm_v2.0_Chr4g0394191' => 'rch', 'RcHm_v2.0_Chr4g0411401' => 'rch', 'RcHm_v2.0_Chr6g0283171' => 'rch', 'RcHm_v2.0_Chr7g0182261' => 'rch', 'Rhsim01G0249000' => 'rsi', 'Rhsim01G0277300' => 'rsi', 'Rhsim02G0040700' => 'rsi', 'Rhsim02G0058000' => 'rsi', 'Rhsim03G0229100' => 'rsi', 'Rhsim05G0016400' => 'rsi', 'Rhsim05G0217900' => 'rsi', 'Rhsim12G0153300' => 'rsi', 'Rhsim13G0052200' => 'rsi', 'Sabra02G0190400' => 'sbr', 'Sabra10G0037400' => 'sbr', 'Sabra14G0111800' => 'sbr', 'SalBow6G4294' => 'sbo', 'Sc04g0002950' => 'sci', 'Sc05g0001780' => 'sci', 'Sc13g0005820' => 'sci', 'Sc19g0007490' => 'sci', 'Sed0008260' => 'sed', 'Sed0011963' => 'sed', 'Sed0013223' => 'sed', 'Sed0016148' => 'sed', 'Sed0025214' => 'sed', 'Sed0027693' => 'sed', 'SEGI_07141' => 'sgi', 'SEGI_13188' => 'sgi', 'SEGI_33888' => 'sgi', 'SEGI_38274' => 'sgi', 'SGA_v2.0_scaffold114G31945' => 'sas', 'SMO146G0365' => 'smo', 'SMO239G0187' => 'smo', 'Solyc06g069640.3' => 'sly', 'Solyc06g083130.4' => 'sly', 'Solyc09g090300.3' => 'sly', 'Solyc09g097930.4' => 'sly', 'Sopen06g026940' => 'spe', 'Sopen06g034520' => 'spe', 'Sopen09g033200' => 'spe', 'Sopen09g035870' => 'spe', 'Sp3g22940' => 'spa', 'TAR362G0374' => 'tar', 'TAR362G0626' => 'tar', 'TAR365G0303' => 'tar', 'TAR371G1104' => 'tar', 'TAR636G0542' => 'tar', 'TAR636G2102' => 'tar', 'THA.LOC104808635' => 'tha', 'THA.LOC104808811' => 'tha', 'THA.LOC104826650' => 'tha', 'Thecc.01G212200' => 'tca', 'Thecc.03G095700' => 'tca', 'Thecc.04G188900' => 'tca', 'Thecc.04G258400' => 'tca', 'Thhalv10002718m.g' => 'esa', 'TPR.G26830' => 'tpr', 'TWI36G0560' => 'twi', 'TWI73G0484' => 'twi', 'TWI81G0377' => 'twi', 'unitig_26.g9424' => 'ugi', 'unitig_746.g26598' => 'ugi', 'vmacro14696' => 'vma', 'vmacro15454' => 'vma', 'vmacro16520' => 'vma', 'VMungo0331G1434' => 'vmu', 'VMungo1215G0775' => 'vmu', 'VMungo1383G1926' => 'vmu', 'Zm00001eb077570' => 'zma', 'Zm00001eb241110' => 'zma', 'Zm00001eb426620' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001757' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001757' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001757' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001757' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '369', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p07000' => 'bna', 'Aa31sc138G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3604' => 'aag', 'Actinidia04856' => 'ach', 'Actinidia23362' => 'ach', 'Actinidia23787' => 'ach', 'Actinidia30021' => 'ach', 'Actinidia34550' => 'ach', 'Actinidia35016' => 'ach', 'Actinidia35917' => 'ach', 'Actinidia39912' => 'ach', 'Ah.04g155610' => 'amhyb', 'Ah.11g051250' => 'amhyb', 'Ah.13g077740' => 'amhyb', 'AL3G41270' => 'aly', 'Aqoxy2G03963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10UC8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3VVE5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94SQQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C45H87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D00LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVWC4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9J2XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU9W9A' => 'arhy', 'AT3G25400' => 'ath', 'ATR0111G003' => 'atr', 'ATR0686G066' => 'atr', 'ATR0736G020' => 'atr', 'ATR0752G024' => 'atr', 'ATR0752G186' => 'atr', 'ATR0752G209' => 'atr', 'Atru.chr3.1870' => 'acertr', 'Atru.chr4.2021' => 'acertr', 'AUR62002158' => 'cqu', 'AUR62008133' => 'cqu', 'AUR62008134' => 'cqu', 'AUR62018511' => 'cqu', 'AUR62020908' => 'cqu', 'AUR62028715' => 'cqu', 'AUR62028716' => 'cqu', 'BcaB06g26741' => 'bca', 'BcaC06g35808' => 'bca', 'BolC7t41528H' => 'bol', 'BraA07t28490Z' => 'bra', 'C07p10630' => 'bna', 'CAN.G220.13' => 'can', 'CAN.G587.17' => 'can', 'CAN.G681.12' => 'can', 'CAN.G874.25' => 'can', 'CANSAT01G1613' => 'cansat', 'CANSAT01G2595' => 'cansat', 'CARHR101700' => 'chi', 'Carub.0003s2571' => 'cru', 'Ca_07398_v3' => 'car', 'Cc01_g16250' => 'ccan', 'Cc03_g05720' => 'ccan', 'Cc03_g09690' => 'ccan', 'Cc04_g14850' => 'ccan', 'CDE02G2693' => 'cde', 'CDE05G3111' => 'cde', 'CDE08G0909' => 'cde', 'CDE09G0246' => 'cde', 'Cfa008682' => 'cfa', 'Cfa010335' => 'cfa', 'Cfa014723' => 'cfa', 'Cfa019287' => 'cfa', 'Ciclev10006144m.g' => 'ccl', 'Ciclev10022875m.g' => 'ccl', 'Ciclev10032689m.g' => 'ccl', 'CiPaw.01G110600' => 'cil', 'CiPaw.01G182200' => 'cil', 'CiPaw.11G049000' => 'cil', 'CiPaw.13G054300' => 'cil', 'CiPaw.14G043200' => 'cil', 'ClCG05G004240' => 'cla', 'ClCG06G015900' => 'cla', 'ClCG07G015510' => 'cla', 'ClCG09G008270' => 'cla', 'COL.COLO4_08683' => 'col', 'COL.COLO4_09311' => 'col', 'COL.COLO4_15911' => 'col', 'Cpa.g.c46494' => 'cpa', 'Cpa.g.sc8.83' => 'cpa', 'Cre16.g686552' => 'cre', 'CsaV3_1G002650' => 'csa', 'CsaV3_3G011970' => 'csa', 'CsaV3_4G003130' => 'csa', 'CsaV3_7G026770' => 'csa', 'CSS0001245' => 'camsi', 'CSS0007550' => 'camsi', 'CSS0014689' => 'camsi', 'CSS0018292' => 'camsi', 'CSS0018679' => 'camsi', 'CSS0028959' => 'camsi', 'CSS0035492' => 'camsi', 'CSS0048622' => 'camsi', 'DCAR_018629' => 'dca', 'DCAR_027475' => 'dca', 'Dinv10676' => 'din', 'Dinv12800' => 'din', 'Dinv27067' => 'din', 'Dinv27166' => 'din', 'Dinv28816' => 'din', 'Duzib084G0053' => 'dzi', 'Duzib133G1413' => 'dzi', 'Duzib138G1318' => 'dzi', 'Duzib151G0053' => 'dzi', 'Duzib151G0428' => 'dzi', 'Duzib211G0212' => 'dzi', 'Duzib212G0040' => 'dzi', 'ECA232G1147' => 'eca', 'ECA238G1289' => 'eca', 'ECA247G1002' => 'eca', 'EL10Ac3g04987' => 'bvu', 'EL10Ac3g07416' => 'bvu', 'EL10Ac5g10643' => 'bvu', 'EL10Ac5g11081' => 'bvu', 'Eucgr.H00497' => 'egr', 'Eucgr.H03027' => 'egr', 'Eucgr.K02094' => 'egr', 'Eucgr.K02095' => 'egr', 'Eucgr.K02096' => 'egr', 'Eucgr.K02495' => 'egr', 'FAN08G2776' => 'fan', 'FAN12G4317' => 'fan', 'FAN13G0282' => 'fan', 'FAN15G2941' => 'fan', 'FAN17G0636' => 'fan', 'FAN18G2148' => 'fan', 'FAN22G1625' => 'fan', 'FAN24G1585' => 'fan', 'FAN24G1916' => 'fan', 'FAN27G0822' => 'fan', 'FvH4_2g17930' => 'fve', 'FvH4_4g03950' => 'fve', 'FvH4_5g14400' => 'fve', 'Glyma.03G089400' => 'gma', 'Glyma.04G133300' => 'gma', 'Glyma.05G023900' => 'gma', 'Glyma.05G101400' => 'gma', 'Glyma.06G197800' => 'gma', 'Glyma.08G345000' => 'gma', 'Glyma.16G083500' => 'gma', 'Gohir.A02G016000' => 'ghi', 'Gohir.A07G069800' => 'ghi', 'Gohir.A07G090500' => 'ghi', 'Gohir.A07G197000' => 'ghi', 'Gohir.A10G110000' => 'ghi', 'Gohir.A11G141900' => 'ghi', 'Gohir.D02G017400' => 'ghi', 'Gohir.D07G074500' => 'ghi', 'Gohir.D07G095200' => 'ghi', 'Gohir.D10G155900' => 'ghi', 'Gohir.D11G148200' => 'ghi', 'Gorai.001G078700' => 'gra', 'Gorai.001G102500' => 'gra', 'Gorai.001G228800' => 'gra', 'Gorai.005G021300' => 'gra', 'Gorai.007G158900' => 'gra', 'Gorai.011G176000' => 'gra', 'GSVIVG01006254001' => 'vvi', 'GSVIVG01007940001' => 'vvi', 'GSVIVG01027846001' => 'vvi', 'GSVIVG01031629001' => 'vvi', 'HanXRQChr01g0013881' => 'han', 'HanXRQChr05g0157151' => 'han', 'HanXRQChr07g0188351' => 'han', 'HanXRQChr14g0436731' => 'han', 'Haze_03307' => 'cav', 'Haze_07669' => 'cav', 'Haze_11407' => 'cav', 'Haze_11701' => 'cav', 'Hma1.2p1_0060F.1_g033410' => 'hma', 'Hma1.2p1_0112F.1_g054240' => 'hma', 'Hma1.2p1_0161F.1_g071300' => 'hma', 'Hma1.2p1_0349F.1_g132220' => 'hma', 'Hma1.2p1_0781F.1_g216890' => 'hma', 'HPP92_005132' => 'vpl', 'HPP92_020213' => 'vpl', 'HPP92_020233' => 'vpl', 'HPP92_020235' => 'vpl', 'HPP92_022216' => 'vpl', 'HPP92_022222' => 'vpl', 'Hund02791' => 'sun', 'Hund03052' => 'sun', 'Hund09842' => 'sun', 'Hund11904' => 'sun', 'Hund18990' => 'sun', 'Hund24448' => 'sun', 'Lalb_Chr03g0041171' => 'lal', 'Lalb_Chr19g0126091' => 'lal', 'Lj1C100G3' => 'lonja', 'Lj1g0003961' => 'lja', 'Lj2A1118G68' => 'lonja', 'Lj4g0016554' => 'lja', 'Lj5A106T76' => 'lonja', 'Lsat_1_v5_gn_2_49221' => 'lsa', 'Lsat_1_v5_gn_5_21660' => 'lsa', 'Lsat_1_v5_gn_9_16160' => 'lsa', 'Lsat_1_v5_gn_9_61240' => 'lsa', 'Manes.03G162800' => 'mes', 'Manes.06G088400' => 'mes', 'Manes.12G052700' => 'mes', 'Manes.13G053600' => 'mes', 'Manes.14G082700' => 'mes', 'Manes.15G042700' => 'mes', 'Mapoly0107s0039' => 'mpo', 'MBI07_g03821_MAGBIO' => 'mbi', 'MBI07_g31093_MAGBIO' => 'mbi', 'MBI10_g13799_MAGBIO' => 'mbi', 'MBI16_g17094_MAGBIO' => 'mbi', 'MCO01G219' => 'mco', 'MD04G1024800' => 'mdo', 'MD04G1025100' => 'mdo', 'MD04G1025300' => 'mdo', 'MD05G1163300' => 'mdo', 'MD06G1198900' => 'mdo', 'MD10G1153100' => 'mdo', 'MD14G1206300' => 'mdo', 'MD16G1221200' => 'mdo', 'Medtr7g052230' => 'mtr', 'MELO3C006410.2' => 'cme', 'MELO3C017201.2' => 'cme', 'MELO3C017733.2' => 'cme', 'MELO3C018993.2' => 'cme', 'MELO3C021137.2' => 'cme', 'Migut.D02465' => 'egut', 'Migut.L00263' => 'egut', 'MSTRG.20996' => 'ama', 'MSTRG.4145' => 'ama', 'MSTRG.4276' => 'ama', 'MSTRG.4446' => 'ama', 'Nitab4.5_0000044g0490' => 'nta', 'Nitab4.5_0000309g0060' => 'nta', 'Nitab4.5_0000309g0080' => 'nta', 'Nitab4.5_0000542g0030' => 'nta', 'Nitab4.5_0000596g0150' => 'nta', 'Nitab4.5_0002463g0010' => 'nta', 'Nitab4.5_0003021g0060' => 'nta', 'Nitab4.5_0004393g0010' => 'nta', 'Nitab4.5_0006673g0120' => 'nta', 'Nn1g02887' => 'nnu', 'Nn1g08028' => 'nnu', 'Nn3g17369' => 'nnu', 'Nn3g19705' => 'nnu', 'Nn4g23319' => 'nnu', 'Oeu005342.1' => 'oeu', 'Oeu034294.1' => 'oeu', 'Oeu047267.1' => 'oeu', 'Oeu053352.1' => 'oeu', 'Oeu055238.1' => 'oeu', 'Oeu055240.1' => 'oeu', 'Oeu064663.1' => 'oeu', 'Os02g0479300' => 'osa', 'Os04g0346800' => 'osa', 'Os04g0515400' => 'osa', 'Peaxi162Scf00013g00048' => 'pax', 'Peaxi162Scf00286g00644' => 'pax', 'Peaxi162Scf00392g00728' => 'pax', 'Peaxi162Scf01242g00133' => 'pax', 'Peaxi162Scf01242g00142' => 'pax', 'PGR044G1413' => 'pgr', 'PGR044G1647' => 'pgr', 'PGR083G2654' => 'pgr', 'PGR089G0002' => 'pgr', 'PGR142G3829' => 'pgr', 'PGSC0003DMG400016605' => 'stu', 'PGSC0003DMG400017214' => 'stu', 'PGSC0003DMG400020112' => 'stu', 'PGSC0003DMG400033050' => 'stu', 'Phvul.003G187033' => 'pvu', 'Phvul.003G187100' => 'pvu', 'Phvul.008G137600' => 'pvu', 'Phvul.010G031100' => 'pvu', 'Phvul.L001765' => 'pvu', 'Potri.002G235000' => 'ptr', 'Potri.002G250000' => 'ptr', 'Potri.008G168700' => 'ptr', 'Potri.010G069700' => 'ptr', 'Potri.014G148200' => 'ptr', 'Pp3c15_18090' => 'ppa', 'Pp3c9_22140' => 'ppa', 'PRCOL_00004568' => 'pco', 'Prupe.1G041600' => 'ppe', 'Prupe.5G199700' => 'ppe', 'Prupe.5G202000' => 'ppe', 'Prupe.8G191900' => 'ppe', 'Psat3g151360' => 'psa', 'PSO017G6762' => 'pso', 'PSO675G0349' => 'pso', 'PSO675G6188' => 'pso', 'PSO675G8592' => 'pso', 'QL06p018664' => 'qlo', 'QL06p028190' => 'qlo', 'QL09p045894' => 'qlo', 'QL10p018485' => 'qlo', 'QL10p018506' => 'qlo', 'RcHm_v2.0_Chr4g0394191' => 'rch', 'RcHm_v2.0_Chr4g0411401' => 'rch', 'RcHm_v2.0_Chr6g0283171' => 'rch', 'RcHm_v2.0_Chr7g0182261' => 'rch', 'Rhsim01G0249000' => 'rsi', 'Rhsim01G0277300' => 'rsi', 'Rhsim02G0040700' => 'rsi', 'Rhsim02G0058000' => 'rsi', 'Rhsim03G0229100' => 'rsi', 'Rhsim05G0016400' => 'rsi', 'Rhsim05G0217900' => 'rsi', 'Rhsim12G0153300' => 'rsi', 'Rhsim13G0052200' => 'rsi', 'Sabra02G0190400' => 'sbr', 'Sabra10G0037400' => 'sbr', 'Sabra14G0111800' => 'sbr', 'SalBow6G4294' => 'sbo', 'Sc04g0002950' => 'sci', 'Sc05g0001780' => 'sci', 'Sc13g0005820' => 'sci', 'Sc19g0007490' => 'sci', 'Sed0008260' => 'sed', 'Sed0011963' => 'sed', 'Sed0013223' => 'sed', 'Sed0016148' => 'sed', 'Sed0025214' => 'sed', 'Sed0027693' => 'sed', 'SEGI_07141' => 'sgi', 'SEGI_13188' => 'sgi', 'SEGI_33888' => 'sgi', 'SEGI_38274' => 'sgi', 'SGA_v2.0_scaffold114G31945' => 'sas', 'SMO146G0365' => 'smo', 'SMO239G0187' => 'smo', 'Solyc06g069640.3' => 'sly', 'Solyc06g083130.4' => 'sly', 'Solyc09g090300.3' => 'sly', 'Solyc09g097930.4' => 'sly', 'Sopen06g026940' => 'spe', 'Sopen06g034520' => 'spe', 'Sopen09g033200' => 'spe', 'Sopen09g035870' => 'spe', 'Sp3g22940' => 'spa', 'TAR362G0374' => 'tar', 'TAR362G0626' => 'tar', 'TAR365G0303' => 'tar', 'TAR371G1104' => 'tar', 'TAR636G0542' => 'tar', 'TAR636G2102' => 'tar', 'THA.LOC104808635' => 'tha', 'THA.LOC104808811' => 'tha', 'THA.LOC104826650' => 'tha', 'Thecc.01G212200' => 'tca', 'Thecc.03G095700' => 'tca', 'Thecc.04G188900' => 'tca', 'Thecc.04G258400' => 'tca', 'Thhalv10002718m.g' => 'esa', 'TPR.G26830' => 'tpr', 'TWI36G0560' => 'twi', 'TWI73G0484' => 'twi', 'TWI81G0377' => 'twi', 'unitig_26.g9424' => 'ugi', 'unitig_746.g26598' => 'ugi', 'vmacro14696' => 'vma', 'vmacro15454' => 'vma', 'vmacro16520' => 'vma', 'VMungo0331G1434' => 'vmu', 'VMungo1215G0775' => 'vmu', 'VMungo1383G1926' => 'vmu', 'Zm00001eb077570' => 'zma', 'Zm00001eb241110' => 'zma', 'Zm00001eb426620' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001757', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001757' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '369', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001757' ) ), 'genes' => array( 'A07p07000' => 'bna', 'Aa31sc138G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3604' => 'aag', 'Actinidia04856' => 'ach', 'Actinidia23362' => 'ach', 'Actinidia23787' => 'ach', 'Actinidia30021' => 'ach', 'Actinidia34550' => 'ach', 'Actinidia35016' => 'ach', 'Actinidia35917' => 'ach', 'Actinidia39912' => 'ach', 'Ah.04g155610' => 'amhyb', 'Ah.11g051250' => 'amhyb', 'Ah.13g077740' => 'amhyb', 'AL3G41270' => 'aly', 'Aqoxy2G03963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10UC8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3VVE5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94SQQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C45H87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D00LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVWC4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9J2XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU9W9A' => 'arhy', 'AT3G25400' => 'ath', 'ATR0111G003' => 'atr', 'ATR0686G066' => 'atr', 'ATR0736G020' => 'atr', 'ATR0752G024' => 'atr', 'ATR0752G186' => 'atr', 'ATR0752G209' => 'atr', 'Atru.chr3.1870' => 'acertr', 'Atru.chr4.2021' => 'acertr', 'AUR62002158' => 'cqu', 'AUR62008133' => 'cqu', 'AUR62008134' => 'cqu', 'AUR62018511' => 'cqu', 'AUR62020908' => 'cqu', 'AUR62028715' => 'cqu', 'AUR62028716' => 'cqu', 'BcaB06g26741' => 'bca', 'BcaC06g35808' => 'bca', 'BolC7t41528H' => 'bol', 'BraA07t28490Z' => 'bra', 'C07p10630' => 'bna', 'CAN.G220.13' => 'can', 'CAN.G587.17' => 'can', 'CAN.G681.12' => 'can', 'CAN.G874.25' => 'can', 'CANSAT01G1613' => 'cansat', 'CANSAT01G2595' => 'cansat', 'CARHR101700' => 'chi', 'Carub.0003s2571' => 'cru', 'Ca_07398_v3' => 'car', 'Cc01_g16250' => 'ccan', 'Cc03_g05720' => 'ccan', 'Cc03_g09690' => 'ccan', 'Cc04_g14850' => 'ccan', 'CDE02G2693' => 'cde', 'CDE05G3111' => 'cde', 'CDE08G0909' => 'cde', 'CDE09G0246' => 'cde', 'Cfa008682' => 'cfa', 'Cfa010335' => 'cfa', 'Cfa014723' => 'cfa', 'Cfa019287' => 'cfa', 'Ciclev10006144m.g' => 'ccl', 'Ciclev10022875m.g' => 'ccl', 'Ciclev10032689m.g' => 'ccl', 'CiPaw.01G110600' => 'cil', 'CiPaw.01G182200' => 'cil', 'CiPaw.11G049000' => 'cil', 'CiPaw.13G054300' => 'cil', 'CiPaw.14G043200' => 'cil', 'ClCG05G004240' => 'cla', 'ClCG06G015900' => 'cla', 'ClCG07G015510' => 'cla', 'ClCG09G008270' => 'cla', 'COL.COLO4_08683' => 'col', 'COL.COLO4_09311' => 'col', 'COL.COLO4_15911' => 'col', 'Cpa.g.c46494' => 'cpa', 'Cpa.g.sc8.83' => 'cpa', 'Cre16.g686552' => 'cre', 'CsaV3_1G002650' => 'csa', 'CsaV3_3G011970' => 'csa', 'CsaV3_4G003130' => 'csa', 'CsaV3_7G026770' => 'csa', 'CSS0001245' => 'camsi', 'CSS0007550' => 'camsi', 'CSS0014689' => 'camsi', 'CSS0018292' => 'camsi', 'CSS0018679' => 'camsi', 'CSS0028959' => 'camsi', 'CSS0035492' => 'camsi', 'CSS0048622' => 'camsi', 'DCAR_018629' => 'dca', 'DCAR_027475' => 'dca', 'Dinv10676' => 'din', 'Dinv12800' => 'din', 'Dinv27067' => 'din', 'Dinv27166' => 'din', 'Dinv28816' => 'din', 'Duzib084G0053' => 'dzi', 'Duzib133G1413' => 'dzi', 'Duzib138G1318' => 'dzi', 'Duzib151G0053' => 'dzi', 'Duzib151G0428' => 'dzi', 'Duzib211G0212' => 'dzi', 'Duzib212G0040' => 'dzi', 'ECA232G1147' => 'eca', 'ECA238G1289' => 'eca', 'ECA247G1002' => 'eca', 'EL10Ac3g04987' => 'bvu', 'EL10Ac3g07416' => 'bvu', 'EL10Ac5g10643' => 'bvu', 'EL10Ac5g11081' => 'bvu', 'Eucgr.H00497' => 'egr', 'Eucgr.H03027' => 'egr', 'Eucgr.K02094' => 'egr', 'Eucgr.K02095' => 'egr', 'Eucgr.K02096' => 'egr', 'Eucgr.K02495' => 'egr', 'FAN08G2776' => 'fan', 'FAN12G4317' => 'fan', 'FAN13G0282' => 'fan', 'FAN15G2941' => 'fan', 'FAN17G0636' => 'fan', 'FAN18G2148' => 'fan', 'FAN22G1625' => 'fan', 'FAN24G1585' => 'fan', 'FAN24G1916' => 'fan', 'FAN27G0822' => 'fan', 'FvH4_2g17930' => 'fve', 'FvH4_4g03950' => 'fve', 'FvH4_5g14400' => 'fve', 'Glyma.03G089400' => 'gma', 'Glyma.04G133300' => 'gma', 'Glyma.05G023900' => 'gma', 'Glyma.05G101400' => 'gma', 'Glyma.06G197800' => 'gma', 'Glyma.08G345000' => 'gma', 'Glyma.16G083500' => 'gma', 'Gohir.A02G016000' => 'ghi', 'Gohir.A07G069800' => 'ghi', 'Gohir.A07G090500' => 'ghi', 'Gohir.A07G197000' => 'ghi', 'Gohir.A10G110000' => 'ghi', 'Gohir.A11G141900' => 'ghi', 'Gohir.D02G017400' => 'ghi', 'Gohir.D07G074500' => 'ghi', 'Gohir.D07G095200' => 'ghi', 'Gohir.D10G155900' => 'ghi', 'Gohir.D11G148200' => 'ghi', 'Gorai.001G078700' => 'gra', 'Gorai.001G102500' => 'gra', 'Gorai.001G228800' => 'gra', 'Gorai.005G021300' => 'gra', 'Gorai.007G158900' => 'gra', 'Gorai.011G176000' => 'gra', 'GSVIVG01006254001' => 'vvi', 'GSVIVG01007940001' => 'vvi', 'GSVIVG01027846001' => 'vvi', 'GSVIVG01031629001' => 'vvi', 'HanXRQChr01g0013881' => 'han', 'HanXRQChr05g0157151' => 'han', 'HanXRQChr07g0188351' => 'han', 'HanXRQChr14g0436731' => 'han', 'Haze_03307' => 'cav', 'Haze_07669' => 'cav', 'Haze_11407' => 'cav', 'Haze_11701' => 'cav', 'Hma1.2p1_0060F.1_g033410' => 'hma', 'Hma1.2p1_0112F.1_g054240' => 'hma', 'Hma1.2p1_0161F.1_g071300' => 'hma', 'Hma1.2p1_0349F.1_g132220' => 'hma', 'Hma1.2p1_0781F.1_g216890' => 'hma', 'HPP92_005132' => 'vpl', 'HPP92_020213' => 'vpl', 'HPP92_020233' => 'vpl', 'HPP92_020235' => 'vpl', 'HPP92_022216' => 'vpl', 'HPP92_022222' => 'vpl', 'Hund02791' => 'sun', 'Hund03052' => 'sun', 'Hund09842' => 'sun', 'Hund11904' => 'sun', 'Hund18990' => 'sun', 'Hund24448' => 'sun', 'Lalb_Chr03g0041171' => 'lal', 'Lalb_Chr19g0126091' => 'lal', 'Lj1C100G3' => 'lonja', 'Lj1g0003961' => 'lja', 'Lj2A1118G68' => 'lonja', 'Lj4g0016554' => 'lja', 'Lj5A106T76' => 'lonja', 'Lsat_1_v5_gn_2_49221' => 'lsa', 'Lsat_1_v5_gn_5_21660' => 'lsa', 'Lsat_1_v5_gn_9_16160' => 'lsa', 'Lsat_1_v5_gn_9_61240' => 'lsa', 'Manes.03G162800' => 'mes', 'Manes.06G088400' => 'mes', 'Manes.12G052700' => 'mes', 'Manes.13G053600' => 'mes', 'Manes.14G082700' => 'mes', 'Manes.15G042700' => 'mes', 'Mapoly0107s0039' => 'mpo', 'MBI07_g03821_MAGBIO' => 'mbi', 'MBI07_g31093_MAGBIO' => 'mbi', 'MBI10_g13799_MAGBIO' => 'mbi', 'MBI16_g17094_MAGBIO' => 'mbi', 'MCO01G219' => 'mco', 'MD04G1024800' => 'mdo', 'MD04G1025100' => 'mdo', 'MD04G1025300' => 'mdo', 'MD05G1163300' => 'mdo', 'MD06G1198900' => 'mdo', 'MD10G1153100' => 'mdo', 'MD14G1206300' => 'mdo', 'MD16G1221200' => 'mdo', 'Medtr7g052230' => 'mtr', 'MELO3C006410.2' => 'cme', 'MELO3C017201.2' => 'cme', 'MELO3C017733.2' => 'cme', 'MELO3C018993.2' => 'cme', 'MELO3C021137.2' => 'cme', 'Migut.D02465' => 'egut', 'Migut.L00263' => 'egut', 'MSTRG.20996' => 'ama', 'MSTRG.4145' => 'ama', 'MSTRG.4276' => 'ama', 'MSTRG.4446' => 'ama', 'Nitab4.5_0000044g0490' => 'nta', 'Nitab4.5_0000309g0060' => 'nta', 'Nitab4.5_0000309g0080' => 'nta', 'Nitab4.5_0000542g0030' => 'nta', 'Nitab4.5_0000596g0150' => 'nta', 'Nitab4.5_0002463g0010' => 'nta', 'Nitab4.5_0003021g0060' => 'nta', 'Nitab4.5_0004393g0010' => 'nta', 'Nitab4.5_0006673g0120' => 'nta', 'Nn1g02887' => 'nnu', 'Nn1g08028' => 'nnu', 'Nn3g17369' => 'nnu', 'Nn3g19705' => 'nnu', 'Nn4g23319' => 'nnu', 'Oeu005342.1' => 'oeu', 'Oeu034294.1' => 'oeu', 'Oeu047267.1' => 'oeu', 'Oeu053352.1' => 'oeu', 'Oeu055238.1' => 'oeu', 'Oeu055240.1' => 'oeu', 'Oeu064663.1' => 'oeu', 'Os02g0479300' => 'osa', 'Os04g0346800' => 'osa', 'Os04g0515400' => 'osa', 'Peaxi162Scf00013g00048' => 'pax', 'Peaxi162Scf00286g00644' => 'pax', 'Peaxi162Scf00392g00728' => 'pax', 'Peaxi162Scf01242g00133' => 'pax', 'Peaxi162Scf01242g00142' => 'pax', 'PGR044G1413' => 'pgr', 'PGR044G1647' => 'pgr', 'PGR083G2654' => 'pgr', 'PGR089G0002' => 'pgr', 'PGR142G3829' => 'pgr', 'PGSC0003DMG400016605' => 'stu', 'PGSC0003DMG400017214' => 'stu', 'PGSC0003DMG400020112' => 'stu', 'PGSC0003DMG400033050' => 'stu', 'Phvul.003G187033' => 'pvu', 'Phvul.003G187100' => 'pvu', 'Phvul.008G137600' => 'pvu', 'Phvul.010G031100' => 'pvu', 'Phvul.L001765' => 'pvu', 'Potri.002G235000' => 'ptr', 'Potri.002G250000' => 'ptr', 'Potri.008G168700' => 'ptr', 'Potri.010G069700' => 'ptr', 'Potri.014G148200' => 'ptr', 'Pp3c15_18090' => 'ppa', 'Pp3c9_22140' => 'ppa', 'PRCOL_00004568' => 'pco', 'Prupe.1G041600' => 'ppe', 'Prupe.5G199700' => 'ppe', 'Prupe.5G202000' => 'ppe', 'Prupe.8G191900' => 'ppe', 'Psat3g151360' => 'psa', 'PSO017G6762' => 'pso', 'PSO675G0349' => 'pso', 'PSO675G6188' => 'pso', 'PSO675G8592' => 'pso', 'QL06p018664' => 'qlo', 'QL06p028190' => 'qlo', 'QL09p045894' => 'qlo', 'QL10p018485' => 'qlo', 'QL10p018506' => 'qlo', 'RcHm_v2.0_Chr4g0394191' => 'rch', 'RcHm_v2.0_Chr4g0411401' => 'rch', 'RcHm_v2.0_Chr6g0283171' => 'rch', 'RcHm_v2.0_Chr7g0182261' => 'rch', 'Rhsim01G0249000' => 'rsi', 'Rhsim01G0277300' => 'rsi', 'Rhsim02G0040700' => 'rsi', 'Rhsim02G0058000' => 'rsi', 'Rhsim03G0229100' => 'rsi', 'Rhsim05G0016400' => 'rsi', 'Rhsim05G0217900' => 'rsi', 'Rhsim12G0153300' => 'rsi', 'Rhsim13G0052200' => 'rsi', 'Sabra02G0190400' => 'sbr', 'Sabra10G0037400' => 'sbr', 'Sabra14G0111800' => 'sbr', 'SalBow6G4294' => 'sbo', 'Sc04g0002950' => 'sci', 'Sc05g0001780' => 'sci', 'Sc13g0005820' => 'sci', 'Sc19g0007490' => 'sci', 'Sed0008260' => 'sed', 'Sed0011963' => 'sed', 'Sed0013223' => 'sed', 'Sed0016148' => 'sed', 'Sed0025214' => 'sed', 'Sed0027693' => 'sed', 'SEGI_07141' => 'sgi', 'SEGI_13188' => 'sgi', 'SEGI_33888' => 'sgi', 'SEGI_38274' => 'sgi', 'SGA_v2.0_scaffold114G31945' => 'sas', 'SMO146G0365' => 'smo', 'SMO239G0187' => 'smo', 'Solyc06g069640.3' => 'sly', 'Solyc06g083130.4' => 'sly', 'Solyc09g090300.3' => 'sly', 'Solyc09g097930.4' => 'sly', 'Sopen06g026940' => 'spe', 'Sopen06g034520' => 'spe', 'Sopen09g033200' => 'spe', 'Sopen09g035870' => 'spe', 'Sp3g22940' => 'spa', 'TAR362G0374' => 'tar', 'TAR362G0626' => 'tar', 'TAR365G0303' => 'tar', 'TAR371G1104' => 'tar', 'TAR636G0542' => 'tar', 'TAR636G2102' => 'tar', 'THA.LOC104808635' => 'tha', 'THA.LOC104808811' => 'tha', 'THA.LOC104826650' => 'tha', 'Thecc.01G212200' => 'tca', 'Thecc.03G095700' => 'tca', 'Thecc.04G188900' => 'tca', 'Thecc.04G258400' => 'tca', 'Thhalv10002718m.g' => 'esa', 'TPR.G26830' => 'tpr', 'TWI36G0560' => 'twi', 'TWI73G0484' => 'twi', 'TWI81G0377' => 'twi', 'unitig_26.g9424' => 'ugi', 'unitig_746.g26598' => 'ugi', 'vmacro14696' => 'vma', 'vmacro15454' => 'vma', 'vmacro16520' => 'vma', 'VMungo0331G1434' => 'vmu', 'VMungo1215G0775' => 'vmu', 'VMungo1383G1926' => 'vmu', 'Zm00001eb077570' => 'zma', 'Zm00001eb241110' => 'zma', 'Zm00001eb426620' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001757' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001757' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001757' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001757' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151