Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p07000 Brassica napus
Aa31sc138G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3604 Anthoceros agrestis
Actinidia04856 Actinidia chinensis
Actinidia23362 Actinidia chinensis
Actinidia23787 Actinidia chinensis
Actinidia30021 Actinidia chinensis
Actinidia34550 Actinidia chinensis
Actinidia35016 Actinidia chinensis
Actinidia35917 Actinidia chinensis
Actinidia39912 Actinidia chinensis
Ah.04g155610 Amaranthus hybridus
Ah.11g051250 Amaranthus hybridus
Ah.13g077740 Amaranthus hybridus
AL3G41270 Arabidopsis lyrata
Aqoxy2G03963 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.10UC8X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3VVE5F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.94SQQ0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C45H87 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D00LME Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RVWC4Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W9J2XI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YU9W9A Arachis hypogaea
AT3G25400 Arabidopsis thaliana
ATR0111G003 Amborella trichopoda
ATR0686G066 Amborella trichopoda
ATR0736G020 Amborella trichopoda
ATR0752G024 Amborella trichopoda
ATR0752G186 Amborella trichopoda
ATR0752G209 Amborella trichopoda
Atru.chr3.1870 Acer truncatum
Atru.chr4.2021 Acer truncatum
AUR62002158 Chenopodium quinoa
AUR62008133 Chenopodium quinoa
AUR62008134 Chenopodium quinoa
AUR62018511 Chenopodium quinoa
AUR62020908 Chenopodium quinoa
AUR62028715 Chenopodium quinoa
AUR62028716 Chenopodium quinoa
BcaB06g26741 Brassica carinata
BcaC06g35808 Brassica carinata
BolC7t41528H Brassica oleracea
BraA07t28490Z Brassica rapa
C07p10630 Brassica napus
CAN.G220.13 Capsicum annuum
CAN.G587.17 Capsicum annuum
CAN.G681.12 Capsicum annuum
CAN.G874.25 Capsicum annuum
CANSAT01G1613 Cannabis sativa
CANSAT01G2595 Cannabis sativa
CARHR101700 Cardamine hirsuta
Carub.0003s2571 Capsella rubella
Ca_07398_v3 Cicer arietinum L.
Cc01_g16250 Coffea canephora
Cc03_g05720 Coffea canephora
Cc03_g09690 Coffea canephora
Cc04_g14850 Coffea canephora
CDE02G2693 Ceratophyllum demersum
CDE05G3111 Ceratophyllum demersum
CDE08G0909 Ceratophyllum demersum
CDE09G0246 Ceratophyllum demersum
Cfa008682 Carpinus fangiana
Cfa010335 Carpinus fangiana
Cfa014723 Carpinus fangiana
Cfa019287 Carpinus fangiana
Ciclev10006144m.g Citrus clementina
Ciclev10022875m.g Citrus clementina
Ciclev10032689m.g Citrus clementina
CiPaw.01G110600 Carya illinoinensis
CiPaw.01G182200 Carya illinoinensis
CiPaw.11G049000 Carya illinoinensis
CiPaw.13G054300 Carya illinoinensis
CiPaw.14G043200 Carya illinoinensis
ClCG05G004240 Citrullus lanatus
ClCG06G015900 Citrullus lanatus
ClCG07G015510 Citrullus lanatus
ClCG09G008270 Citrullus lanatus
COL.COLO4_08683 Corchorus olitorius
COL.COLO4_09311 Corchorus olitorius
COL.COLO4_15911 Corchorus olitorius
Cpa.g.c46494 Carica papaya
Cpa.g.sc8.83 Carica papaya
Cre16.g686552 Chlamydomonas reinhardtii
CsaV3_1G002650 Cucumis sativus L.
CsaV3_3G011970 Cucumis sativus L.
CsaV3_4G003130 Cucumis sativus L.
CsaV3_7G026770 Cucumis sativus L.
CSS0001245 Camellia sinensis var. sinensis
CSS0007550 Camellia sinensis var. sinensis
CSS0014689 Camellia sinensis var. sinensis
CSS0018292 Camellia sinensis var. sinensis
CSS0018679 Camellia sinensis var. sinensis
CSS0028959 Camellia sinensis var. sinensis
CSS0035492 Camellia sinensis var. sinensis
CSS0048622 Camellia sinensis var. sinensis
DCAR_018629 Daucus carota
DCAR_027475 Daucus carota
Dinv10676 Davidia involucrata
Dinv12800 Davidia involucrata
Dinv27067 Davidia involucrata
Dinv27166 Davidia involucrata
Dinv28816 Davidia involucrata
Duzib084G0053 Durio zibethinus
Duzib133G1413 Durio zibethinus
Duzib138G1318 Durio zibethinus
Duzib151G0053 Durio zibethinus
Duzib151G0428 Durio zibethinus
Duzib211G0212 Durio zibethinus
Duzib212G0040 Durio zibethinus
ECA232G1147 Erigeron canadensis
ECA238G1289 Erigeron canadensis
ECA247G1002 Erigeron canadensis
EL10Ac3g04987 Beta vulgaris
EL10Ac3g07416 Beta vulgaris
EL10Ac5g10643 Beta vulgaris
EL10Ac5g11081 Beta vulgaris
Eucgr.H00497 Eucalyptus grandis
Eucgr.H03027 Eucalyptus grandis
Eucgr.K02094 Eucalyptus grandis
Eucgr.K02095 Eucalyptus grandis
Eucgr.K02096 Eucalyptus grandis
Eucgr.K02495 Eucalyptus grandis
FAN08G2776 Fragaria x ananassa
FAN12G4317 Fragaria x ananassa
FAN13G0282 Fragaria x ananassa
FAN15G2941 Fragaria x ananassa
FAN17G0636 Fragaria x ananassa
FAN18G2148 Fragaria x ananassa
FAN22G1625 Fragaria x ananassa
FAN24G1585 Fragaria x ananassa
FAN24G1916 Fragaria x ananassa
FAN27G0822 Fragaria x ananassa
FvH4_2g17930 Fragaria vesca
FvH4_4g03950 Fragaria vesca
FvH4_5g14400 Fragaria vesca
Glyma.03G089400 Glycine max
Glyma.04G133300 Glycine max
Glyma.05G023900 Glycine max
Glyma.05G101400 Glycine max
Glyma.06G197800 Glycine max
Glyma.08G345000 Glycine max
Glyma.16G083500 Glycine max
Gohir.A02G016000 Gossypium hirsutum
Gohir.A07G069800 Gossypium hirsutum
Gohir.A07G090500 Gossypium hirsutum
Gohir.A07G197000 Gossypium hirsutum
Gohir.A10G110000 Gossypium hirsutum
Gohir.A11G141900 Gossypium hirsutum
Gohir.D02G017400 Gossypium hirsutum
Gohir.D07G074500 Gossypium hirsutum
Gohir.D07G095200 Gossypium hirsutum
Gohir.D10G155900 Gossypium hirsutum
Gohir.D11G148200 Gossypium hirsutum
Gorai.001G078700 Gossypium raimondii
Gorai.001G102500 Gossypium raimondii
Gorai.001G228800 Gossypium raimondii
Gorai.005G021300 Gossypium raimondii
Gorai.007G158900 Gossypium raimondii
Gorai.011G176000 Gossypium raimondii
GSVIVG01006254001 Vitis vinifera
GSVIVG01007940001 Vitis vinifera
GSVIVG01027846001 Vitis vinifera
GSVIVG01031629001 Vitis vinifera
HanXRQChr01g0013881 Helianthus annuus
HanXRQChr05g0157151 Helianthus annuus
HanXRQChr07g0188351 Helianthus annuus
HanXRQChr14g0436731 Helianthus annuus
Haze_03307 Corylus avellana
Haze_07669 Corylus avellana
Haze_11407 Corylus avellana
Haze_11701 Corylus avellana
Hma1.2p1_0060F.1_g033410 Hydrangea macrophylla
Hma1.2p1_0112F.1_g054240 Hydrangea macrophylla
Hma1.2p1_0161F.1_g071300 Hydrangea macrophylla
Hma1.2p1_0349F.1_g132220 Hydrangea macrophylla
Hma1.2p1_0781F.1_g216890 Hydrangea macrophylla
HPP92_005132 Vanilla planifolia
HPP92_020213 Vanilla planifolia
HPP92_020233 Vanilla planifolia
HPP92_020235 Vanilla planifolia
HPP92_022216 Vanilla planifolia
HPP92_022222 Vanilla planifolia
Hund02791 Selenicereus undatus
Hund03052 Selenicereus undatus
Hund09842 Selenicereus undatus
Hund11904 Selenicereus undatus
Hund18990 Selenicereus undatus
Hund24448 Selenicereus undatus
Lalb_Chr03g0041171 Lupinus albus
Lalb_Chr19g0126091 Lupinus albus
Lj1C100G3 Lonicera japonica
Lj1g0003961 Lotus japonicus
Lj2A1118G68 Lonicera japonica
Lj4g0016554 Lotus japonicus
Lj5A106T76 Lonicera japonica
Lsat_1_v5_gn_2_49221 Lactuca sativa
Lsat_1_v5_gn_5_21660 Lactuca sativa
Lsat_1_v5_gn_9_16160 Lactuca sativa
Lsat_1_v5_gn_9_61240 Lactuca sativa
Manes.03G162800 Manihot esculenta
Manes.06G088400 Manihot esculenta
Manes.12G052700 Manihot esculenta
Manes.13G053600 Manihot esculenta
Manes.14G082700 Manihot esculenta
Manes.15G042700 Manihot esculenta
Mapoly0107s0039 Marchantia polymorpha
MBI07_g03821_MAGBIO Magnolia biondii
MBI07_g31093_MAGBIO Magnolia biondii
MBI10_g13799_MAGBIO Magnolia biondii
MBI16_g17094_MAGBIO Magnolia biondii
MCO01G219 Micromonas commoda
MD04G1024800 Malus domestica
MD04G1025100 Malus domestica
MD04G1025300 Malus domestica
MD05G1163300 Malus domestica
MD06G1198900 Malus domestica
MD10G1153100 Malus domestica
MD14G1206300 Malus domestica
MD16G1221200 Malus domestica
Medtr7g052230 Medicago truncatula
MELO3C006410.2 Cucumis melo
MELO3C017201.2 Cucumis melo
MELO3C017733.2 Cucumis melo
MELO3C018993.2 Cucumis melo
MELO3C021137.2 Cucumis melo
Migut.D02465 Erythranthe guttata
Migut.L00263 Erythranthe guttata
MSTRG.20996 Avicennia marina
MSTRG.4145 Avicennia marina
MSTRG.4276 Avicennia marina
MSTRG.4446 Avicennia marina
Nitab4.5_0000044g0490 Nicotiana tabacum
Nitab4.5_0000309g0060 Nicotiana tabacum
Nitab4.5_0000309g0080 Nicotiana tabacum
Nitab4.5_0000542g0030 Nicotiana tabacum
Nitab4.5_0000596g0150 Nicotiana tabacum
Nitab4.5_0002463g0010 Nicotiana tabacum
Nitab4.5_0003021g0060 Nicotiana tabacum
Nitab4.5_0004393g0010 Nicotiana tabacum
Nitab4.5_0006673g0120 Nicotiana tabacum
Nn1g02887 Nelumbo nucifera
Nn1g08028 Nelumbo nucifera
Nn3g17369 Nelumbo nucifera
Nn3g19705 Nelumbo nucifera
Nn4g23319 Nelumbo nucifera
Oeu005342.1 Olea europaea
Oeu034294.1 Olea europaea
Oeu047267.1 Olea europaea
Oeu053352.1 Olea europaea
Oeu055238.1 Olea europaea
Oeu055240.1 Olea europaea
Oeu064663.1 Olea europaea
Os02g0479300 Oryza sativa ssp. japonica
Os04g0346800 Oryza sativa ssp. japonica
Os04g0515400 Oryza sativa ssp. japonica
Peaxi162Scf00013g00048 Petunia axillaris
Peaxi162Scf00286g00644 Petunia axillaris
Peaxi162Scf00392g00728 Petunia axillaris
Peaxi162Scf01242g00133 Petunia axillaris
Peaxi162Scf01242g00142 Petunia axillaris
PGR044G1413 Punica granatum
PGR044G1647 Punica granatum
PGR083G2654 Punica granatum
PGR089G0002 Punica granatum
PGR142G3829 Punica granatum
PGSC0003DMG400016605 Solanum tuberosum
PGSC0003DMG400017214 Solanum tuberosum
PGSC0003DMG400020112 Solanum tuberosum
PGSC0003DMG400033050 Solanum tuberosum
Phvul.003G187033 Phaseolus vulgaris
Phvul.003G187100 Phaseolus vulgaris
Phvul.008G137600 Phaseolus vulgaris
Phvul.010G031100 Phaseolus vulgaris
Phvul.L001765 Phaseolus vulgaris
Potri.002G235000 Populus trichocarpa
Potri.002G250000 Populus trichocarpa
Potri.008G168700 Populus trichocarpa
Potri.010G069700 Populus trichocarpa
Potri.014G148200 Populus trichocarpa
Pp3c15_18090 Physcomitrium patens
Pp3c9_22140 Physcomitrium patens
PRCOL_00004568 Prasinoderma coloniale
Prupe.1G041600 Prunus persica
Prupe.5G199700 Prunus persica
Prupe.5G202000 Prunus persica
Prupe.8G191900 Prunus persica
Psat3g151360 Pisum sativum
PSO017G6762 Papaver somniferum
PSO675G0349 Papaver somniferum
PSO675G6188 Papaver somniferum
PSO675G8592 Papaver somniferum
QL06p018664 Quercus lobata
QL06p028190 Quercus lobata
QL09p045894 Quercus lobata
QL10p018485 Quercus lobata
QL10p018506 Quercus lobata
RcHm_v2.0_Chr4g0394191 Rosa chinensis
RcHm_v2.0_Chr4g0411401 Rosa chinensis
RcHm_v2.0_Chr6g0283171 Rosa chinensis
RcHm_v2.0_Chr7g0182261 Rosa chinensis
Rhsim01G0249000 Rhododendron simsii
Rhsim01G0277300 Rhododendron simsii
Rhsim02G0040700 Rhododendron simsii
Rhsim02G0058000 Rhododendron simsii
Rhsim03G0229100 Rhododendron simsii
Rhsim05G0016400 Rhododendron simsii
Rhsim05G0217900 Rhododendron simsii
Rhsim12G0153300 Rhododendron simsii
Rhsim13G0052200 Rhododendron simsii
Sabra02G0190400 Salix brachista
Sabra10G0037400 Salix brachista
Sabra14G0111800 Salix brachista
SalBow6G4294 Salvia bowleyana
Sc04g0002950 Simmondsia chinensis
Sc05g0001780 Simmondsia chinensis
Sc13g0005820 Simmondsia chinensis
Sc19g0007490 Simmondsia chinensis
Sed0008260 Sechium edule
Sed0011963 Sechium edule
Sed0013223 Sechium edule
Sed0016148 Sechium edule
Sed0025214 Sechium edule
Sed0027693 Sechium edule
SEGI_07141 Sequoiadendron giganteum
SEGI_13188 Sequoiadendron giganteum
SEGI_33888 Sequoiadendron giganteum
SEGI_38274 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31945 Striga asiatica
SMO146G0365 Selaginella moellendorffii
SMO239G0187 Selaginella moellendorffii
Solyc06g069640.3 Solanum lycopersicum
Solyc06g083130.4 Solanum lycopersicum
Solyc09g090300.3 Solanum lycopersicum
Solyc09g097930.4 Solanum lycopersicum
Sopen06g026940 Solanum pennellii
Sopen06g034520 Solanum pennellii
Sopen09g033200 Solanum pennellii
Sopen09g035870 Solanum pennellii
Sp3g22940 Schrenkiella parvula
TAR362G0374 Trochodendron aralioides
TAR362G0626 Trochodendron aralioides
TAR365G0303 Trochodendron aralioides
TAR371G1104 Trochodendron aralioides
TAR636G0542 Trochodendron aralioides
TAR636G2102 Trochodendron aralioides
THA.LOC104808635 Tarenaya hassleriana
THA.LOC104808811 Tarenaya hassleriana
THA.LOC104826650 Tarenaya hassleriana
Thecc.01G212200 Theobroma cacao
Thecc.03G095700 Theobroma cacao
Thecc.04G188900 Theobroma cacao
Thecc.04G258400 Theobroma cacao
Thhalv10002718m.g Eutrema salsugineum
TPR.G26830 Trifolium pratense
TWI36G0560 Tripterygium wilfordii
TWI73G0484 Tripterygium wilfordii
TWI81G0377 Tripterygium wilfordii
unitig_26.g9424 Utricularia gibba
unitig_746.g26598 Utricularia gibba
vmacro14696 Vaccinium macrocarpon
vmacro15454 Vaccinium macrocarpon
vmacro16520 Vaccinium macrocarpon
VMungo0331G1434 Vigna mungo
VMungo1215G0775 Vigna mungo
VMungo1383G1926 Vigna mungo
Zm00001eb077570 Zea mays
Zm00001eb241110 Zea mays
Zm00001eb426620 Zea mays

User provided reference genes

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