Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001721', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '376', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p00820' => 'bna', 'A03p45270' => 'bna', 'A03p65790' => 'bna', 'A05p43480' => 'bna', 'A06p32900' => 'bna', 'A08p23190' => 'bna', 'A09p10490' => 'bna', 'Aa31LG1G16070' => 'aar', 'Aa31LG5G14480' => 'aar', 'Aa31LG6G15330' => 'aar', 'Aa31LG8G12790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.257__258' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.373' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2818' => 'aag', 'Actinidia16428' => 'ach', 'Actinidia22082' => 'ach', 'Actinidia30552' => 'ach', 'Actinidia32840' => 'ach', 'Ah.03g140540' => 'amhyb', 'AL3G13790' => 'aly', 'AL3G46480' => 'aly', 'AL7G12190' => 'aly', 'AL8G43780' => 'aly', 'Aqoxy1G00483' => 'aox', 'Aqoxy5G00872' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W779N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8PRW0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFDA09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U78PA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XY76Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0PJVS' => 'arhy', 'AT2G14750' => 'ath', 'AT3G03900' => 'ath', 'AT4G39940' => 'ath', 'AT5G67520' => 'ath', 'ATR1153G097' => 'atr', 'Atru.chr2.1388' => 'acertr', 'Atru.chr3.1006' => 'acertr', 'AUR62004006' => 'cqu', 'AUR62032052' => 'cqu', 'AUR62032695' => 'cqu', 'AUR62040241' => 'cqu', 'BcaB02g09916' => 'bca', 'BcaB02g11537' => 'bca', 'BcaB03g12295' => 'bca', 'BcaB04g20047' => 'bca', 'BcaB08g34569' => 'bca', 'BcaC01g00331' => 'bca', 'BcaC01g03090' => 'bca', 'BcaC04g23069' => 'bca', 'BcaC04g23233' => 'bca', 'BcaC05g29893' => 'bca', 'BcaC05g30243' => 'bca', 'BcaC05g30292' => 'bca', 'BcaNung00915' => 'bca', 'BcaNung03406' => 'bca', 'BcaNung06389' => 'bca', 'BolC1t00093H' => 'bol', 'BolC3t17899H' => 'bol', 'BolC3t18221H' => 'bol', 'BolC3t20107H' => 'bol', 'BolC5t34967H' => 'bol', 'BolC7t46691H' => 'bol', 'BolC9t53980H' => 'bol', 'BolC9t54139H' => 'bol', 'BraA01t00084Z' => 'bra', 'BraA03t13660Z' => 'bra', 'BraA03t15632Z' => 'bra', 'BraA05t23087Z' => 'bra', 'BraA06t26221Z' => 'bra', 'BraA08t34277Z' => 'bra', 'BraA09t36694Z' => 'bra', 'C01p00930' => 'bna', 'C03p56120' => 'bna', 'C03p59570' => 'bna', 'C03p78550' => 'bna', 'C07p62770' => 'bna', 'C09p10870' => 'bna', 'C09p12460' => 'bna', 'CAN.G1075.33' => 'can', 'CAN.G128.62' => 'can', 'CAN.G775.9' => 'can', 'CANSAT01G2425' => 'cansat', 'CANSAT25G2073' => 'cansat', 'CARHR078020' => 'chi', 'CARHR246760' => 'chi', 'CARHR280070' => 'chi', 'CARHR286460' => 'chi', 'Carub.0003s0314' => 'cru', 'Carub.0003s2878' => 'cru', 'Carub.0007s0188' => 'cru', 'Carub.0008s2695' => 'cru', 'Ca_08268_v3' => 'car', 'Ca_22108_v3' => 'car', 'Ca_22115_v3' => 'car', 'Ca_24695_v3' => 'car', 'CBR_g28654' => 'cbr', 'Cc06_g23010' => 'ccan', 'Cc07_g07070' => 'ccan', 'CDE06G1587' => 'cde', 'Cfa004128' => 'cfa', 'Cfa004663' => 'cfa', 'Cfa016445' => 'cfa', 'Cfa026598' => 'cfa', 'Ciclev10022273m.g' => 'ccl', 'Ciclev10026239m.g' => 'ccl', 'CiPaw.01G004800' => 'cil', 'CiPaw.05G018100' => 'cil', 'CiPaw.09G002100' => 'cil', 'ClCG01G017560' => 'cla', 'ClCG10G010250' => 'cla', 'ClCG10G013390' => 'cla', 'COL.COLO4_11572' => 'col', 'COL.COLO4_11573' => 'col', 'COL.COLO4_13593' => 'col', 'Cpa.g.sc106.46' => 'cpa', 'Cpa.g.sc51.118' => 'cpa', 'Cpa.g.sc6.21' => 'cpa', 'Cpa.g.sc752.4' => 'cpa', 'Cre16.g677500' => 'cre', 'CsaV3_3G043250' => 'csa', 'CsaV3_4G000200' => 'csa', 'CsaV3_6G044100' => 'csa', 'CSS0004311' => 'camsi', 'CSS0010676' => 'camsi', 'CSS0015234' => 'camsi', 'DCAR_010821' => 'dca', 'DCAR_013686' => 'dca', 'Dinv04051' => 'din', 'Dinv26927' => 'din', 'Dinv37017' => 'din', 'Duzib106G1802' => 'dzi', 'Duzib128G1240' => 'dzi', 'Duzib147G1052' => 'dzi', 'Duzib177G0513' => 'dzi', 'Duzib177G0855' => 'dzi', 'Duzib187G0930' => 'dzi', 'ECA233G4150' => 'eca', 'ECA238G2391' => 'eca', 'ECA246G1468' => 'eca', 'EL10Ac3g06822' => 'bvu', 'EL10Ac6g15622' => 'bvu', 'Eucgr.A02099' => 'egr', 'Eucgr.H02306' => 'egr', 'FAN15G0974' => 'fan', 'FAN19G2035' => 'fan', 'FAN20G0294' => 'fan', 'FAN23G0291' => 'fan', 'FAN23G2641' => 'fan', 'FAN24G1279' => 'fan', 'FAN26G1723' => 'fan', 'FAN26G2890' => 'fan', 'FAN27G1384' => 'fan', 'FAN28G0637' => 'fan', 'FAN28G1685' => 'fan', 'FvH4_1g17660' => 'fve', 'FvH4_1g28150' => 'fve', 'FvH4_2g04460' => 'fve', 'Glyma.01G193950' => 'gma', 'Glyma.01G194000' => 'gma', 'Glyma.05G105300' => 'gma', 'Glyma.11G047900' => 'gma', 'Glyma.16G040900' => 'gma', 'Glyma.17G161100' => 'gma', 'Glyma.19G112200' => 'gma', 'Gohir.A02G151800' => 'ghi', 'Gohir.A11G215150' => 'ghi', 'Gohir.A11G296300' => 'ghi', 'Gohir.A12G077100' => 'ghi', 'Gohir.A13G172100' => 'ghi', 'Gohir.D03G028600' => 'ghi', 'Gohir.D11G208200' => 'ghi', 'Gohir.D11G310600' => 'ghi', 'Gohir.D12G075300' => 'ghi', 'Gohir.D13G178000' => 'ghi', 'Gorai.003G030100' => 'gra', 'Gorai.007G223200' => 'gra', 'Gorai.007G343200' => 'gra', 'Gorai.008G083800' => 'gra', 'Gorai.013G203300' => 'gra', 'GSVIVG01000111001' => 'vvi', 'GSVIVG01000120001' => 'vvi', 'GSVIVG01033406001' => 'vvi', 'GSVIVG01037835001' => 'vvi', 'HanXRQChr05g0130381' => 'han', 'HanXRQChr11g0350871' => 'han', 'HanXRQChr12g0376331' => 'han', 'HanXRQChr13g0397701' => 'han', 'HanXRQChr15g0472651' => 'han', 'Haze_10260' => 'cav', 'Haze_15286' => 'cav', 'Haze_19422' => 'cav', 'Hma1.2p1_0152F.1_g067710' => 'hma', 'Hma1.2p1_0479F.1_g161620' => 'hma', 'Hma1.2p1_0808F.1_g221610' => 'hma', 'Hma1.2p1_0852F.1_g228460' => 'hma', 'Hma1.2p1_3081F.1_g332450' => 'hma', 'Hma1.2p1_3538F.1_g336660' => 'hma', 'HPP92_009489' => 'vpl', 'HPP92_009543' => 'vpl', 'HPP92_014232' => 'vpl', 'HPP92_026493' => 'vpl', 'Hund13951' => 'sun', 'Hund16398' => 'sun', 'Hund24833' => 'sun', 'Lalb_Chr05g0225881' => 'lal', 'Lalb_Chr09g0323591' => 'lal', 'Lalb_Chr14g0364501' => 'lal', 'Lalb_Chr14g0364511' => 'lal', 'Lalb_Chr16g0376291' => 'lal', 'Lj1g0020420' => 'lja', 'Lj1g0027563' => 'lja', 'Lj2g0015524' => 'lja', 'Lj4A163T71' => 'lonja', 'Lj4g0021358' => 'lja', 'Lj8C584G0' => 'lonja', 'Lsat_1_v5_gn_2_83321' => 'lsa', 'Lsat_1_v5_gn_3_86160' => 'lsa', 'Lsat_1_v5_gn_6_37300' => 'lsa', 'Lsat_1_v5_gn_7_74021' => 'lsa', 'Lsat_1_v5_gn_8_27761' => 'lsa', 'Manes.08G144500' => 'mes', 'Manes.09G141100' => 'mes', 'Manes.10G083700' => 'mes', 'Manes.12G113800' => 'mes', 'Manes.13G111900' => 'mes', 'Mapoly0001s0168' => 'mpo', 'Mapoly0151s0024' => 'mpo', 'MBI01_g13085_MAGBIO' => 'mbi', 'MBI16_g07982_MAGBIO' => 'mbi', 'MCO01G791' => 'mco', 'MD02G1185400' => 'mdo', 'MD05G1100600' => 'mdo', 'MD10G1105800' => 'mdo', 'MD11G1100500' => 'mdo', 'MD12G1003900' => 'mdo', 'MD14G1002700' => 'mdo', 'MD15G1297000' => 'mdo', 'MD15G1430000' => 'mdo', 'Medtr4g097010' => 'mtr', 'Medtr5g015530' => 'mtr', 'Medtr7g085650' => 'mtr', 'MELO3C000465.2' => 'cme', 'MELO3C007632.2' => 'cme', 'MELO3C008444.2' => 'cme', 'MELO3C012940.2' => 'cme', 'MELO3C017519.2' => 'cme', 'MELO3C018012.2' => 'cme', 'MELO3C026885.2' => 'cme', 'MELO3C027505.2' => 'cme', 'MELO3C031763.2' => 'cme', 'Migut.K00007' => 'egut', 'Migut.L00216' => 'egut', 'MSTRG.10860' => 'ama', 'MSTRG.15352' => 'ama', 'Nitab4.5_0000036g0050' => 'nta', 'Nitab4.5_0000142g0020' => 'nta', 'Nitab4.5_0000394g0020' => 'nta', 'Nitab4.5_0000626g0070' => 'nta', 'Nitab4.5_0001079g0180' => 'nta', 'Nitab4.5_0002119g0120' => 'nta', 'Nitab4.5_0009367g0010' => 'nta', 'Nitab4.5_0010836g0020' => 'nta', 'Nn1g04558' => 'nnu', 'Nn2g15865' => 'nnu', 'Nn5g30583' => 'nnu', 'Nn7g35854' => 'nnu', 'Oeu013319.1' => 'oeu', 'Oeu014245.1' => 'oeu', 'Oeu014246.1' => 'oeu', 'Oeu017645.2' => 'oeu', 'Oeu048433.1' => 'oeu', 'Oeu054195.1' => 'oeu', 'Os03g0202001' => 'osa', 'Os07g0573100' => 'osa', 'Os11g0634800' => 'osa', 'Peaxi162Scf00249g00719' => 'pax', 'Peaxi162Scf00449g00313' => 'pax', 'Peaxi162Scf00463g00014' => 'pax', 'Peaxi162Scf00548g00648' => 'pax', 'PGR042G0262' => 'pgr', 'PGR102G2084' => 'pgr', 'PGSC0003DMG400003318' => 'stu', 'PGSC0003DMG400021446' => 'stu', 'PGSC0003DMG400023663' => 'stu', 'Phvul.001G111000' => 'pvu', 'Phvul.002G010900' => 'pvu', 'Phvul.003G235300' => 'pvu', 'Potri.001G293400' => 'ptr', 'Potri.009G088100' => 'ptr', 'Potri.013G057900' => 'ptr', 'Pp3c10_2670' => 'ppa', 'Pp3c23_21010' => 'ppa', 'Pp3c24_11970' => 'ppa', 'Pp3c2_19640' => 'ppa', 'PRCOL_00000153' => 'pco', 'Prupe.6G221200' => 'ppe', 'Prupe.7G004400' => 'ppe', 'Prupe.8G145000' => 'ppe', 'Psat0s1971g0360' => 'psa', 'Psat2g171480' => 'psa', 'Psat4g082000' => 'psa', 'PSO017G6474' => 'pso', 'PSO170G0740' => 'pso', 'PSO339G3322' => 'pso', 'PSO384G5135' => 'pso', 'QL07p018306' => 'qlo', 'QL11p030465' => 'qlo', 'RcHm_v2.0_Chr2g0107981' => 'rch', 'RcHm_v2.0_Chr3g0497061' => 'rch', 'RcHm_v2.0_Chr6g0253831' => 'rch', 'Rhsim08G0093700' => 'rsi', 'Sabra13G0051500' => 'sbr', 'Sabra16G0183300' => 'sbr', 'SalBow5G3056' => 'sbo', 'SalBow5G3476' => 'sbo', 'SalBow6G6032' => 'sbo', 'Sc16g0002900' => 'sci', 'Sc19g0006440' => 'sci', 'Sed0003357' => 'sed', 'Sed0009291' => 'sed', 'Sed0015268' => 'sed', 'Sed0015770' => 'sed', 'Sed0021142' => 'sed', 'SEGI_40361' => 'sgi', 'SGA_v2.0_scaffold13G06406' => 'sas', 'SGA_v2.0_scaffold90G27719' => 'sas', 'SGA_v2.0_scaffold94G28402' => 'sas', 'SMO119G0379' => 'smo', 'SMO337G0036' => 'smo', 'SMO367G0161' => 'smo', 'Solyc02g064650.3' => 'sly', 'Solyc02g092410.3' => 'sly', 'Solyc10g080680.3' => 'sly', 'Sopen02g014750' => 'spe', 'Sopen02g036960' => 'spe', 'Sopen10g031220' => 'spe', 'Sp2g29130' => 'spa', 'Sp3g02870' => 'spa', 'Sp3g27920' => 'spa', 'Sp7g35950' => 'spa', 'TAR623G1634' => 'tar', 'TAR628G0218' => 'tar', 'THA.LOC104807216' => 'tha', 'THA.LOC104819529' => 'tha', 'THA.LOC104820774' => 'tha', 'THA.LOC104821201' => 'tha', 'THA.LOC104824878' => 'tha', 'Thecc.01G072300' => 'tca', 'Thecc.02G211000' => 'tca', 'Thecc.05G294900' => 'tca', 'Thecc.05G295200' => 'tca', 'Thecc.05G296100' => 'tca', 'Thecc.05G296400' => 'tca', 'Thhalv10004693m.g' => 'esa', 'Thhalv10021488m.g' => 'esa', 'Thhalv10022805m.g' => 'esa', 'Thhalv10025861m.g' => 'esa', 'TPR.G24229' => 'tpr', 'TPR.G34854' => 'tpr', 'TPR.G5859' => 'tpr', 'TWI09G0994' => 'twi', 'TWI14G0342' => 'twi', 'TWI59G1184' => 'twi', 'TWI73G1078' => 'twi', 'unitig_736.g22478' => 'ugi', 'vmacro12566' => 'vma', 'vmacro18026' => 'vma', 'VMungo0251G2360' => 'vmu', 'VMungo1215G2007' => 'vmu', 'VMungo1383G3601' => 'vmu', 'Zm00001eb107420' => 'zma', 'Zm00001eb166390' => 'zma', 'Zm00001eb325100' => 'zma', 'Zm00001eb400760' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001721', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001721' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001721', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '376', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001721' ) ), 'genes' => array( 'A01p00820' => 'bna', 'A03p45270' => 'bna', 'A03p65790' => 'bna', 'A05p43480' => 'bna', 'A06p32900' => 'bna', 'A08p23190' => 'bna', 'A09p10490' => 'bna', 'Aa31LG1G16070' => 'aar', 'Aa31LG5G14480' => 'aar', 'Aa31LG6G15330' => 'aar', 'Aa31LG8G12790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.257__258' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.373' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2818' => 'aag', 'Actinidia16428' => 'ach', 'Actinidia22082' => 'ach', 'Actinidia30552' => 'ach', 'Actinidia32840' => 'ach', 'Ah.03g140540' => 'amhyb', 'AL3G13790' => 'aly', 'AL3G46480' => 'aly', 'AL7G12190' => 'aly', 'AL8G43780' => 'aly', 'Aqoxy1G00483' => 'aox', 'Aqoxy5G00872' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W779N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8PRW0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFDA09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U78PA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XY76Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0PJVS' => 'arhy', 'AT2G14750' => 'ath', 'AT3G03900' => 'ath', 'AT4G39940' => 'ath', 'AT5G67520' => 'ath', 'ATR1153G097' => 'atr', 'Atru.chr2.1388' => 'acertr', 'Atru.chr3.1006' => 'acertr', 'AUR62004006' => 'cqu', 'AUR62032052' => 'cqu', 'AUR62032695' => 'cqu', 'AUR62040241' => 'cqu', 'BcaB02g09916' => 'bca', 'BcaB02g11537' => 'bca', 'BcaB03g12295' => 'bca', 'BcaB04g20047' => 'bca', 'BcaB08g34569' => 'bca', 'BcaC01g00331' => 'bca', 'BcaC01g03090' => 'bca', 'BcaC04g23069' => 'bca', 'BcaC04g23233' => 'bca', 'BcaC05g29893' => 'bca', 'BcaC05g30243' => 'bca', 'BcaC05g30292' => 'bca', 'BcaNung00915' => 'bca', 'BcaNung03406' => 'bca', 'BcaNung06389' => 'bca', 'BolC1t00093H' => 'bol', 'BolC3t17899H' => 'bol', 'BolC3t18221H' => 'bol', 'BolC3t20107H' => 'bol', 'BolC5t34967H' => 'bol', 'BolC7t46691H' => 'bol', 'BolC9t53980H' => 'bol', 'BolC9t54139H' => 'bol', 'BraA01t00084Z' => 'bra', 'BraA03t13660Z' => 'bra', 'BraA03t15632Z' => 'bra', 'BraA05t23087Z' => 'bra', 'BraA06t26221Z' => 'bra', 'BraA08t34277Z' => 'bra', 'BraA09t36694Z' => 'bra', 'C01p00930' => 'bna', 'C03p56120' => 'bna', 'C03p59570' => 'bna', 'C03p78550' => 'bna', 'C07p62770' => 'bna', 'C09p10870' => 'bna', 'C09p12460' => 'bna', 'CAN.G1075.33' => 'can', 'CAN.G128.62' => 'can', 'CAN.G775.9' => 'can', 'CANSAT01G2425' => 'cansat', 'CANSAT25G2073' => 'cansat', 'CARHR078020' => 'chi', 'CARHR246760' => 'chi', 'CARHR280070' => 'chi', 'CARHR286460' => 'chi', 'Carub.0003s0314' => 'cru', 'Carub.0003s2878' => 'cru', 'Carub.0007s0188' => 'cru', 'Carub.0008s2695' => 'cru', 'Ca_08268_v3' => 'car', 'Ca_22108_v3' => 'car', 'Ca_22115_v3' => 'car', 'Ca_24695_v3' => 'car', 'CBR_g28654' => 'cbr', 'Cc06_g23010' => 'ccan', 'Cc07_g07070' => 'ccan', 'CDE06G1587' => 'cde', 'Cfa004128' => 'cfa', 'Cfa004663' => 'cfa', 'Cfa016445' => 'cfa', 'Cfa026598' => 'cfa', 'Ciclev10022273m.g' => 'ccl', 'Ciclev10026239m.g' => 'ccl', 'CiPaw.01G004800' => 'cil', 'CiPaw.05G018100' => 'cil', 'CiPaw.09G002100' => 'cil', 'ClCG01G017560' => 'cla', 'ClCG10G010250' => 'cla', 'ClCG10G013390' => 'cla', 'COL.COLO4_11572' => 'col', 'COL.COLO4_11573' => 'col', 'COL.COLO4_13593' => 'col', 'Cpa.g.sc106.46' => 'cpa', 'Cpa.g.sc51.118' => 'cpa', 'Cpa.g.sc6.21' => 'cpa', 'Cpa.g.sc752.4' => 'cpa', 'Cre16.g677500' => 'cre', 'CsaV3_3G043250' => 'csa', 'CsaV3_4G000200' => 'csa', 'CsaV3_6G044100' => 'csa', 'CSS0004311' => 'camsi', 'CSS0010676' => 'camsi', 'CSS0015234' => 'camsi', 'DCAR_010821' => 'dca', 'DCAR_013686' => 'dca', 'Dinv04051' => 'din', 'Dinv26927' => 'din', 'Dinv37017' => 'din', 'Duzib106G1802' => 'dzi', 'Duzib128G1240' => 'dzi', 'Duzib147G1052' => 'dzi', 'Duzib177G0513' => 'dzi', 'Duzib177G0855' => 'dzi', 'Duzib187G0930' => 'dzi', 'ECA233G4150' => 'eca', 'ECA238G2391' => 'eca', 'ECA246G1468' => 'eca', 'EL10Ac3g06822' => 'bvu', 'EL10Ac6g15622' => 'bvu', 'Eucgr.A02099' => 'egr', 'Eucgr.H02306' => 'egr', 'FAN15G0974' => 'fan', 'FAN19G2035' => 'fan', 'FAN20G0294' => 'fan', 'FAN23G0291' => 'fan', 'FAN23G2641' => 'fan', 'FAN24G1279' => 'fan', 'FAN26G1723' => 'fan', 'FAN26G2890' => 'fan', 'FAN27G1384' => 'fan', 'FAN28G0637' => 'fan', 'FAN28G1685' => 'fan', 'FvH4_1g17660' => 'fve', 'FvH4_1g28150' => 'fve', 'FvH4_2g04460' => 'fve', 'Glyma.01G193950' => 'gma', 'Glyma.01G194000' => 'gma', 'Glyma.05G105300' => 'gma', 'Glyma.11G047900' => 'gma', 'Glyma.16G040900' => 'gma', 'Glyma.17G161100' => 'gma', 'Glyma.19G112200' => 'gma', 'Gohir.A02G151800' => 'ghi', 'Gohir.A11G215150' => 'ghi', 'Gohir.A11G296300' => 'ghi', 'Gohir.A12G077100' => 'ghi', 'Gohir.A13G172100' => 'ghi', 'Gohir.D03G028600' => 'ghi', 'Gohir.D11G208200' => 'ghi', 'Gohir.D11G310600' => 'ghi', 'Gohir.D12G075300' => 'ghi', 'Gohir.D13G178000' => 'ghi', 'Gorai.003G030100' => 'gra', 'Gorai.007G223200' => 'gra', 'Gorai.007G343200' => 'gra', 'Gorai.008G083800' => 'gra', 'Gorai.013G203300' => 'gra', 'GSVIVG01000111001' => 'vvi', 'GSVIVG01000120001' => 'vvi', 'GSVIVG01033406001' => 'vvi', 'GSVIVG01037835001' => 'vvi', 'HanXRQChr05g0130381' => 'han', 'HanXRQChr11g0350871' => 'han', 'HanXRQChr12g0376331' => 'han', 'HanXRQChr13g0397701' => 'han', 'HanXRQChr15g0472651' => 'han', 'Haze_10260' => 'cav', 'Haze_15286' => 'cav', 'Haze_19422' => 'cav', 'Hma1.2p1_0152F.1_g067710' => 'hma', 'Hma1.2p1_0479F.1_g161620' => 'hma', 'Hma1.2p1_0808F.1_g221610' => 'hma', 'Hma1.2p1_0852F.1_g228460' => 'hma', 'Hma1.2p1_3081F.1_g332450' => 'hma', 'Hma1.2p1_3538F.1_g336660' => 'hma', 'HPP92_009489' => 'vpl', 'HPP92_009543' => 'vpl', 'HPP92_014232' => 'vpl', 'HPP92_026493' => 'vpl', 'Hund13951' => 'sun', 'Hund16398' => 'sun', 'Hund24833' => 'sun', 'Lalb_Chr05g0225881' => 'lal', 'Lalb_Chr09g0323591' => 'lal', 'Lalb_Chr14g0364501' => 'lal', 'Lalb_Chr14g0364511' => 'lal', 'Lalb_Chr16g0376291' => 'lal', 'Lj1g0020420' => 'lja', 'Lj1g0027563' => 'lja', 'Lj2g0015524' => 'lja', 'Lj4A163T71' => 'lonja', 'Lj4g0021358' => 'lja', 'Lj8C584G0' => 'lonja', 'Lsat_1_v5_gn_2_83321' => 'lsa', 'Lsat_1_v5_gn_3_86160' => 'lsa', 'Lsat_1_v5_gn_6_37300' => 'lsa', 'Lsat_1_v5_gn_7_74021' => 'lsa', 'Lsat_1_v5_gn_8_27761' => 'lsa', 'Manes.08G144500' => 'mes', 'Manes.09G141100' => 'mes', 'Manes.10G083700' => 'mes', 'Manes.12G113800' => 'mes', 'Manes.13G111900' => 'mes', 'Mapoly0001s0168' => 'mpo', 'Mapoly0151s0024' => 'mpo', 'MBI01_g13085_MAGBIO' => 'mbi', 'MBI16_g07982_MAGBIO' => 'mbi', 'MCO01G791' => 'mco', 'MD02G1185400' => 'mdo', 'MD05G1100600' => 'mdo', 'MD10G1105800' => 'mdo', 'MD11G1100500' => 'mdo', 'MD12G1003900' => 'mdo', 'MD14G1002700' => 'mdo', 'MD15G1297000' => 'mdo', 'MD15G1430000' => 'mdo', 'Medtr4g097010' => 'mtr', 'Medtr5g015530' => 'mtr', 'Medtr7g085650' => 'mtr', 'MELO3C000465.2' => 'cme', 'MELO3C007632.2' => 'cme', 'MELO3C008444.2' => 'cme', 'MELO3C012940.2' => 'cme', 'MELO3C017519.2' => 'cme', 'MELO3C018012.2' => 'cme', 'MELO3C026885.2' => 'cme', 'MELO3C027505.2' => 'cme', 'MELO3C031763.2' => 'cme', 'Migut.K00007' => 'egut', 'Migut.L00216' => 'egut', 'MSTRG.10860' => 'ama', 'MSTRG.15352' => 'ama', 'Nitab4.5_0000036g0050' => 'nta', 'Nitab4.5_0000142g0020' => 'nta', 'Nitab4.5_0000394g0020' => 'nta', 'Nitab4.5_0000626g0070' => 'nta', 'Nitab4.5_0001079g0180' => 'nta', 'Nitab4.5_0002119g0120' => 'nta', 'Nitab4.5_0009367g0010' => 'nta', 'Nitab4.5_0010836g0020' => 'nta', 'Nn1g04558' => 'nnu', 'Nn2g15865' => 'nnu', 'Nn5g30583' => 'nnu', 'Nn7g35854' => 'nnu', 'Oeu013319.1' => 'oeu', 'Oeu014245.1' => 'oeu', 'Oeu014246.1' => 'oeu', 'Oeu017645.2' => 'oeu', 'Oeu048433.1' => 'oeu', 'Oeu054195.1' => 'oeu', 'Os03g0202001' => 'osa', 'Os07g0573100' => 'osa', 'Os11g0634800' => 'osa', 'Peaxi162Scf00249g00719' => 'pax', 'Peaxi162Scf00449g00313' => 'pax', 'Peaxi162Scf00463g00014' => 'pax', 'Peaxi162Scf00548g00648' => 'pax', 'PGR042G0262' => 'pgr', 'PGR102G2084' => 'pgr', 'PGSC0003DMG400003318' => 'stu', 'PGSC0003DMG400021446' => 'stu', 'PGSC0003DMG400023663' => 'stu', 'Phvul.001G111000' => 'pvu', 'Phvul.002G010900' => 'pvu', 'Phvul.003G235300' => 'pvu', 'Potri.001G293400' => 'ptr', 'Potri.009G088100' => 'ptr', 'Potri.013G057900' => 'ptr', 'Pp3c10_2670' => 'ppa', 'Pp3c23_21010' => 'ppa', 'Pp3c24_11970' => 'ppa', 'Pp3c2_19640' => 'ppa', 'PRCOL_00000153' => 'pco', 'Prupe.6G221200' => 'ppe', 'Prupe.7G004400' => 'ppe', 'Prupe.8G145000' => 'ppe', 'Psat0s1971g0360' => 'psa', 'Psat2g171480' => 'psa', 'Psat4g082000' => 'psa', 'PSO017G6474' => 'pso', 'PSO170G0740' => 'pso', 'PSO339G3322' => 'pso', 'PSO384G5135' => 'pso', 'QL07p018306' => 'qlo', 'QL11p030465' => 'qlo', 'RcHm_v2.0_Chr2g0107981' => 'rch', 'RcHm_v2.0_Chr3g0497061' => 'rch', 'RcHm_v2.0_Chr6g0253831' => 'rch', 'Rhsim08G0093700' => 'rsi', 'Sabra13G0051500' => 'sbr', 'Sabra16G0183300' => 'sbr', 'SalBow5G3056' => 'sbo', 'SalBow5G3476' => 'sbo', 'SalBow6G6032' => 'sbo', 'Sc16g0002900' => 'sci', 'Sc19g0006440' => 'sci', 'Sed0003357' => 'sed', 'Sed0009291' => 'sed', 'Sed0015268' => 'sed', 'Sed0015770' => 'sed', 'Sed0021142' => 'sed', 'SEGI_40361' => 'sgi', 'SGA_v2.0_scaffold13G06406' => 'sas', 'SGA_v2.0_scaffold90G27719' => 'sas', 'SGA_v2.0_scaffold94G28402' => 'sas', 'SMO119G0379' => 'smo', 'SMO337G0036' => 'smo', 'SMO367G0161' => 'smo', 'Solyc02g064650.3' => 'sly', 'Solyc02g092410.3' => 'sly', 'Solyc10g080680.3' => 'sly', 'Sopen02g014750' => 'spe', 'Sopen02g036960' => 'spe', 'Sopen10g031220' => 'spe', 'Sp2g29130' => 'spa', 'Sp3g02870' => 'spa', 'Sp3g27920' => 'spa', 'Sp7g35950' => 'spa', 'TAR623G1634' => 'tar', 'TAR628G0218' => 'tar', 'THA.LOC104807216' => 'tha', 'THA.LOC104819529' => 'tha', 'THA.LOC104820774' => 'tha', 'THA.LOC104821201' => 'tha', 'THA.LOC104824878' => 'tha', 'Thecc.01G072300' => 'tca', 'Thecc.02G211000' => 'tca', 'Thecc.05G294900' => 'tca', 'Thecc.05G295200' => 'tca', 'Thecc.05G296100' => 'tca', 'Thecc.05G296400' => 'tca', 'Thhalv10004693m.g' => 'esa', 'Thhalv10021488m.g' => 'esa', 'Thhalv10022805m.g' => 'esa', 'Thhalv10025861m.g' => 'esa', 'TPR.G24229' => 'tpr', 'TPR.G34854' => 'tpr', 'TPR.G5859' => 'tpr', 'TWI09G0994' => 'twi', 'TWI14G0342' => 'twi', 'TWI59G1184' => 'twi', 'TWI73G1078' => 'twi', 'unitig_736.g22478' => 'ugi', 'vmacro12566' => 'vma', 'vmacro18026' => 'vma', 'VMungo0251G2360' => 'vmu', 'VMungo1215G2007' => 'vmu', 'VMungo1383G3601' => 'vmu', 'Zm00001eb107420' => 'zma', 'Zm00001eb166390' => 'zma', 'Zm00001eb325100' => 'zma', 'Zm00001eb400760' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001721' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001721' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001721' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001721' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001721', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '376', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p00820' => 'bna', 'A03p45270' => 'bna', 'A03p65790' => 'bna', 'A05p43480' => 'bna', 'A06p32900' => 'bna', 'A08p23190' => 'bna', 'A09p10490' => 'bna', 'Aa31LG1G16070' => 'aar', 'Aa31LG5G14480' => 'aar', 'Aa31LG6G15330' => 'aar', 'Aa31LG8G12790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.257__258' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.373' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2818' => 'aag', 'Actinidia16428' => 'ach', 'Actinidia22082' => 'ach', 'Actinidia30552' => 'ach', 'Actinidia32840' => 'ach', 'Ah.03g140540' => 'amhyb', 'AL3G13790' => 'aly', 'AL3G46480' => 'aly', 'AL7G12190' => 'aly', 'AL8G43780' => 'aly', 'Aqoxy1G00483' => 'aox', 'Aqoxy5G00872' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W779N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8PRW0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFDA09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U78PA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XY76Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0PJVS' => 'arhy', 'AT2G14750' => 'ath', 'AT3G03900' => 'ath', 'AT4G39940' => 'ath', 'AT5G67520' => 'ath', 'ATR1153G097' => 'atr', 'Atru.chr2.1388' => 'acertr', 'Atru.chr3.1006' => 'acertr', 'AUR62004006' => 'cqu', 'AUR62032052' => 'cqu', 'AUR62032695' => 'cqu', 'AUR62040241' => 'cqu', 'BcaB02g09916' => 'bca', 'BcaB02g11537' => 'bca', 'BcaB03g12295' => 'bca', 'BcaB04g20047' => 'bca', 'BcaB08g34569' => 'bca', 'BcaC01g00331' => 'bca', 'BcaC01g03090' => 'bca', 'BcaC04g23069' => 'bca', 'BcaC04g23233' => 'bca', 'BcaC05g29893' => 'bca', 'BcaC05g30243' => 'bca', 'BcaC05g30292' => 'bca', 'BcaNung00915' => 'bca', 'BcaNung03406' => 'bca', 'BcaNung06389' => 'bca', 'BolC1t00093H' => 'bol', 'BolC3t17899H' => 'bol', 'BolC3t18221H' => 'bol', 'BolC3t20107H' => 'bol', 'BolC5t34967H' => 'bol', 'BolC7t46691H' => 'bol', 'BolC9t53980H' => 'bol', 'BolC9t54139H' => 'bol', 'BraA01t00084Z' => 'bra', 'BraA03t13660Z' => 'bra', 'BraA03t15632Z' => 'bra', 'BraA05t23087Z' => 'bra', 'BraA06t26221Z' => 'bra', 'BraA08t34277Z' => 'bra', 'BraA09t36694Z' => 'bra', 'C01p00930' => 'bna', 'C03p56120' => 'bna', 'C03p59570' => 'bna', 'C03p78550' => 'bna', 'C07p62770' => 'bna', 'C09p10870' => 'bna', 'C09p12460' => 'bna', 'CAN.G1075.33' => 'can', 'CAN.G128.62' => 'can', 'CAN.G775.9' => 'can', 'CANSAT01G2425' => 'cansat', 'CANSAT25G2073' => 'cansat', 'CARHR078020' => 'chi', 'CARHR246760' => 'chi', 'CARHR280070' => 'chi', 'CARHR286460' => 'chi', 'Carub.0003s0314' => 'cru', 'Carub.0003s2878' => 'cru', 'Carub.0007s0188' => 'cru', 'Carub.0008s2695' => 'cru', 'Ca_08268_v3' => 'car', 'Ca_22108_v3' => 'car', 'Ca_22115_v3' => 'car', 'Ca_24695_v3' => 'car', 'CBR_g28654' => 'cbr', 'Cc06_g23010' => 'ccan', 'Cc07_g07070' => 'ccan', 'CDE06G1587' => 'cde', 'Cfa004128' => 'cfa', 'Cfa004663' => 'cfa', 'Cfa016445' => 'cfa', 'Cfa026598' => 'cfa', 'Ciclev10022273m.g' => 'ccl', 'Ciclev10026239m.g' => 'ccl', 'CiPaw.01G004800' => 'cil', 'CiPaw.05G018100' => 'cil', 'CiPaw.09G002100' => 'cil', 'ClCG01G017560' => 'cla', 'ClCG10G010250' => 'cla', 'ClCG10G013390' => 'cla', 'COL.COLO4_11572' => 'col', 'COL.COLO4_11573' => 'col', 'COL.COLO4_13593' => 'col', 'Cpa.g.sc106.46' => 'cpa', 'Cpa.g.sc51.118' => 'cpa', 'Cpa.g.sc6.21' => 'cpa', 'Cpa.g.sc752.4' => 'cpa', 'Cre16.g677500' => 'cre', 'CsaV3_3G043250' => 'csa', 'CsaV3_4G000200' => 'csa', 'CsaV3_6G044100' => 'csa', 'CSS0004311' => 'camsi', 'CSS0010676' => 'camsi', 'CSS0015234' => 'camsi', 'DCAR_010821' => 'dca', 'DCAR_013686' => 'dca', 'Dinv04051' => 'din', 'Dinv26927' => 'din', 'Dinv37017' => 'din', 'Duzib106G1802' => 'dzi', 'Duzib128G1240' => 'dzi', 'Duzib147G1052' => 'dzi', 'Duzib177G0513' => 'dzi', 'Duzib177G0855' => 'dzi', 'Duzib187G0930' => 'dzi', 'ECA233G4150' => 'eca', 'ECA238G2391' => 'eca', 'ECA246G1468' => 'eca', 'EL10Ac3g06822' => 'bvu', 'EL10Ac6g15622' => 'bvu', 'Eucgr.A02099' => 'egr', 'Eucgr.H02306' => 'egr', 'FAN15G0974' => 'fan', 'FAN19G2035' => 'fan', 'FAN20G0294' => 'fan', 'FAN23G0291' => 'fan', 'FAN23G2641' => 'fan', 'FAN24G1279' => 'fan', 'FAN26G1723' => 'fan', 'FAN26G2890' => 'fan', 'FAN27G1384' => 'fan', 'FAN28G0637' => 'fan', 'FAN28G1685' => 'fan', 'FvH4_1g17660' => 'fve', 'FvH4_1g28150' => 'fve', 'FvH4_2g04460' => 'fve', 'Glyma.01G193950' => 'gma', 'Glyma.01G194000' => 'gma', 'Glyma.05G105300' => 'gma', 'Glyma.11G047900' => 'gma', 'Glyma.16G040900' => 'gma', 'Glyma.17G161100' => 'gma', 'Glyma.19G112200' => 'gma', 'Gohir.A02G151800' => 'ghi', 'Gohir.A11G215150' => 'ghi', 'Gohir.A11G296300' => 'ghi', 'Gohir.A12G077100' => 'ghi', 'Gohir.A13G172100' => 'ghi', 'Gohir.D03G028600' => 'ghi', 'Gohir.D11G208200' => 'ghi', 'Gohir.D11G310600' => 'ghi', 'Gohir.D12G075300' => 'ghi', 'Gohir.D13G178000' => 'ghi', 'Gorai.003G030100' => 'gra', 'Gorai.007G223200' => 'gra', 'Gorai.007G343200' => 'gra', 'Gorai.008G083800' => 'gra', 'Gorai.013G203300' => 'gra', 'GSVIVG01000111001' => 'vvi', 'GSVIVG01000120001' => 'vvi', 'GSVIVG01033406001' => 'vvi', 'GSVIVG01037835001' => 'vvi', 'HanXRQChr05g0130381' => 'han', 'HanXRQChr11g0350871' => 'han', 'HanXRQChr12g0376331' => 'han', 'HanXRQChr13g0397701' => 'han', 'HanXRQChr15g0472651' => 'han', 'Haze_10260' => 'cav', 'Haze_15286' => 'cav', 'Haze_19422' => 'cav', 'Hma1.2p1_0152F.1_g067710' => 'hma', 'Hma1.2p1_0479F.1_g161620' => 'hma', 'Hma1.2p1_0808F.1_g221610' => 'hma', 'Hma1.2p1_0852F.1_g228460' => 'hma', 'Hma1.2p1_3081F.1_g332450' => 'hma', 'Hma1.2p1_3538F.1_g336660' => 'hma', 'HPP92_009489' => 'vpl', 'HPP92_009543' => 'vpl', 'HPP92_014232' => 'vpl', 'HPP92_026493' => 'vpl', 'Hund13951' => 'sun', 'Hund16398' => 'sun', 'Hund24833' => 'sun', 'Lalb_Chr05g0225881' => 'lal', 'Lalb_Chr09g0323591' => 'lal', 'Lalb_Chr14g0364501' => 'lal', 'Lalb_Chr14g0364511' => 'lal', 'Lalb_Chr16g0376291' => 'lal', 'Lj1g0020420' => 'lja', 'Lj1g0027563' => 'lja', 'Lj2g0015524' => 'lja', 'Lj4A163T71' => 'lonja', 'Lj4g0021358' => 'lja', 'Lj8C584G0' => 'lonja', 'Lsat_1_v5_gn_2_83321' => 'lsa', 'Lsat_1_v5_gn_3_86160' => 'lsa', 'Lsat_1_v5_gn_6_37300' => 'lsa', 'Lsat_1_v5_gn_7_74021' => 'lsa', 'Lsat_1_v5_gn_8_27761' => 'lsa', 'Manes.08G144500' => 'mes', 'Manes.09G141100' => 'mes', 'Manes.10G083700' => 'mes', 'Manes.12G113800' => 'mes', 'Manes.13G111900' => 'mes', 'Mapoly0001s0168' => 'mpo', 'Mapoly0151s0024' => 'mpo', 'MBI01_g13085_MAGBIO' => 'mbi', 'MBI16_g07982_MAGBIO' => 'mbi', 'MCO01G791' => 'mco', 'MD02G1185400' => 'mdo', 'MD05G1100600' => 'mdo', 'MD10G1105800' => 'mdo', 'MD11G1100500' => 'mdo', 'MD12G1003900' => 'mdo', 'MD14G1002700' => 'mdo', 'MD15G1297000' => 'mdo', 'MD15G1430000' => 'mdo', 'Medtr4g097010' => 'mtr', 'Medtr5g015530' => 'mtr', 'Medtr7g085650' => 'mtr', 'MELO3C000465.2' => 'cme', 'MELO3C007632.2' => 'cme', 'MELO3C008444.2' => 'cme', 'MELO3C012940.2' => 'cme', 'MELO3C017519.2' => 'cme', 'MELO3C018012.2' => 'cme', 'MELO3C026885.2' => 'cme', 'MELO3C027505.2' => 'cme', 'MELO3C031763.2' => 'cme', 'Migut.K00007' => 'egut', 'Migut.L00216' => 'egut', 'MSTRG.10860' => 'ama', 'MSTRG.15352' => 'ama', 'Nitab4.5_0000036g0050' => 'nta', 'Nitab4.5_0000142g0020' => 'nta', 'Nitab4.5_0000394g0020' => 'nta', 'Nitab4.5_0000626g0070' => 'nta', 'Nitab4.5_0001079g0180' => 'nta', 'Nitab4.5_0002119g0120' => 'nta', 'Nitab4.5_0009367g0010' => 'nta', 'Nitab4.5_0010836g0020' => 'nta', 'Nn1g04558' => 'nnu', 'Nn2g15865' => 'nnu', 'Nn5g30583' => 'nnu', 'Nn7g35854' => 'nnu', 'Oeu013319.1' => 'oeu', 'Oeu014245.1' => 'oeu', 'Oeu014246.1' => 'oeu', 'Oeu017645.2' => 'oeu', 'Oeu048433.1' => 'oeu', 'Oeu054195.1' => 'oeu', 'Os03g0202001' => 'osa', 'Os07g0573100' => 'osa', 'Os11g0634800' => 'osa', 'Peaxi162Scf00249g00719' => 'pax', 'Peaxi162Scf00449g00313' => 'pax', 'Peaxi162Scf00463g00014' => 'pax', 'Peaxi162Scf00548g00648' => 'pax', 'PGR042G0262' => 'pgr', 'PGR102G2084' => 'pgr', 'PGSC0003DMG400003318' => 'stu', 'PGSC0003DMG400021446' => 'stu', 'PGSC0003DMG400023663' => 'stu', 'Phvul.001G111000' => 'pvu', 'Phvul.002G010900' => 'pvu', 'Phvul.003G235300' => 'pvu', 'Potri.001G293400' => 'ptr', 'Potri.009G088100' => 'ptr', 'Potri.013G057900' => 'ptr', 'Pp3c10_2670' => 'ppa', 'Pp3c23_21010' => 'ppa', 'Pp3c24_11970' => 'ppa', 'Pp3c2_19640' => 'ppa', 'PRCOL_00000153' => 'pco', 'Prupe.6G221200' => 'ppe', 'Prupe.7G004400' => 'ppe', 'Prupe.8G145000' => 'ppe', 'Psat0s1971g0360' => 'psa', 'Psat2g171480' => 'psa', 'Psat4g082000' => 'psa', 'PSO017G6474' => 'pso', 'PSO170G0740' => 'pso', 'PSO339G3322' => 'pso', 'PSO384G5135' => 'pso', 'QL07p018306' => 'qlo', 'QL11p030465' => 'qlo', 'RcHm_v2.0_Chr2g0107981' => 'rch', 'RcHm_v2.0_Chr3g0497061' => 'rch', 'RcHm_v2.0_Chr6g0253831' => 'rch', 'Rhsim08G0093700' => 'rsi', 'Sabra13G0051500' => 'sbr', 'Sabra16G0183300' => 'sbr', 'SalBow5G3056' => 'sbo', 'SalBow5G3476' => 'sbo', 'SalBow6G6032' => 'sbo', 'Sc16g0002900' => 'sci', 'Sc19g0006440' => 'sci', 'Sed0003357' => 'sed', 'Sed0009291' => 'sed', 'Sed0015268' => 'sed', 'Sed0015770' => 'sed', 'Sed0021142' => 'sed', 'SEGI_40361' => 'sgi', 'SGA_v2.0_scaffold13G06406' => 'sas', 'SGA_v2.0_scaffold90G27719' => 'sas', 'SGA_v2.0_scaffold94G28402' => 'sas', 'SMO119G0379' => 'smo', 'SMO337G0036' => 'smo', 'SMO367G0161' => 'smo', 'Solyc02g064650.3' => 'sly', 'Solyc02g092410.3' => 'sly', 'Solyc10g080680.3' => 'sly', 'Sopen02g014750' => 'spe', 'Sopen02g036960' => 'spe', 'Sopen10g031220' => 'spe', 'Sp2g29130' => 'spa', 'Sp3g02870' => 'spa', 'Sp3g27920' => 'spa', 'Sp7g35950' => 'spa', 'TAR623G1634' => 'tar', 'TAR628G0218' => 'tar', 'THA.LOC104807216' => 'tha', 'THA.LOC104819529' => 'tha', 'THA.LOC104820774' => 'tha', 'THA.LOC104821201' => 'tha', 'THA.LOC104824878' => 'tha', 'Thecc.01G072300' => 'tca', 'Thecc.02G211000' => 'tca', 'Thecc.05G294900' => 'tca', 'Thecc.05G295200' => 'tca', 'Thecc.05G296100' => 'tca', 'Thecc.05G296400' => 'tca', 'Thhalv10004693m.g' => 'esa', 'Thhalv10021488m.g' => 'esa', 'Thhalv10022805m.g' => 'esa', 'Thhalv10025861m.g' => 'esa', 'TPR.G24229' => 'tpr', 'TPR.G34854' => 'tpr', 'TPR.G5859' => 'tpr', 'TWI09G0994' => 'twi', 'TWI14G0342' => 'twi', 'TWI59G1184' => 'twi', 'TWI73G1078' => 'twi', 'unitig_736.g22478' => 'ugi', 'vmacro12566' => 'vma', 'vmacro18026' => 'vma', 'VMungo0251G2360' => 'vmu', 'VMungo1215G2007' => 'vmu', 'VMungo1383G3601' => 'vmu', 'Zm00001eb107420' => 'zma', 'Zm00001eb166390' => 'zma', 'Zm00001eb325100' => 'zma', 'Zm00001eb400760' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001721', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001721' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001721', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '376', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001721' ) ), 'genes' => array( 'A01p00820' => 'bna', 'A03p45270' => 'bna', 'A03p65790' => 'bna', 'A05p43480' => 'bna', 'A06p32900' => 'bna', 'A08p23190' => 'bna', 'A09p10490' => 'bna', 'Aa31LG1G16070' => 'aar', 'Aa31LG5G14480' => 'aar', 'Aa31LG6G15330' => 'aar', 'Aa31LG8G12790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.257__258' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.373' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2818' => 'aag', 'Actinidia16428' => 'ach', 'Actinidia22082' => 'ach', 'Actinidia30552' => 'ach', 'Actinidia32840' => 'ach', 'Ah.03g140540' => 'amhyb', 'AL3G13790' => 'aly', 'AL3G46480' => 'aly', 'AL7G12190' => 'aly', 'AL8G43780' => 'aly', 'Aqoxy1G00483' => 'aox', 'Aqoxy5G00872' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W779N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8PRW0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFDA09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U78PA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XY76Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0PJVS' => 'arhy', 'AT2G14750' => 'ath', 'AT3G03900' => 'ath', 'AT4G39940' => 'ath', 'AT5G67520' => 'ath', 'ATR1153G097' => 'atr', 'Atru.chr2.1388' => 'acertr', 'Atru.chr3.1006' => 'acertr', 'AUR62004006' => 'cqu', 'AUR62032052' => 'cqu', 'AUR62032695' => 'cqu', 'AUR62040241' => 'cqu', 'BcaB02g09916' => 'bca', 'BcaB02g11537' => 'bca', 'BcaB03g12295' => 'bca', 'BcaB04g20047' => 'bca', 'BcaB08g34569' => 'bca', 'BcaC01g00331' => 'bca', 'BcaC01g03090' => 'bca', 'BcaC04g23069' => 'bca', 'BcaC04g23233' => 'bca', 'BcaC05g29893' => 'bca', 'BcaC05g30243' => 'bca', 'BcaC05g30292' => 'bca', 'BcaNung00915' => 'bca', 'BcaNung03406' => 'bca', 'BcaNung06389' => 'bca', 'BolC1t00093H' => 'bol', 'BolC3t17899H' => 'bol', 'BolC3t18221H' => 'bol', 'BolC3t20107H' => 'bol', 'BolC5t34967H' => 'bol', 'BolC7t46691H' => 'bol', 'BolC9t53980H' => 'bol', 'BolC9t54139H' => 'bol', 'BraA01t00084Z' => 'bra', 'BraA03t13660Z' => 'bra', 'BraA03t15632Z' => 'bra', 'BraA05t23087Z' => 'bra', 'BraA06t26221Z' => 'bra', 'BraA08t34277Z' => 'bra', 'BraA09t36694Z' => 'bra', 'C01p00930' => 'bna', 'C03p56120' => 'bna', 'C03p59570' => 'bna', 'C03p78550' => 'bna', 'C07p62770' => 'bna', 'C09p10870' => 'bna', 'C09p12460' => 'bna', 'CAN.G1075.33' => 'can', 'CAN.G128.62' => 'can', 'CAN.G775.9' => 'can', 'CANSAT01G2425' => 'cansat', 'CANSAT25G2073' => 'cansat', 'CARHR078020' => 'chi', 'CARHR246760' => 'chi', 'CARHR280070' => 'chi', 'CARHR286460' => 'chi', 'Carub.0003s0314' => 'cru', 'Carub.0003s2878' => 'cru', 'Carub.0007s0188' => 'cru', 'Carub.0008s2695' => 'cru', 'Ca_08268_v3' => 'car', 'Ca_22108_v3' => 'car', 'Ca_22115_v3' => 'car', 'Ca_24695_v3' => 'car', 'CBR_g28654' => 'cbr', 'Cc06_g23010' => 'ccan', 'Cc07_g07070' => 'ccan', 'CDE06G1587' => 'cde', 'Cfa004128' => 'cfa', 'Cfa004663' => 'cfa', 'Cfa016445' => 'cfa', 'Cfa026598' => 'cfa', 'Ciclev10022273m.g' => 'ccl', 'Ciclev10026239m.g' => 'ccl', 'CiPaw.01G004800' => 'cil', 'CiPaw.05G018100' => 'cil', 'CiPaw.09G002100' => 'cil', 'ClCG01G017560' => 'cla', 'ClCG10G010250' => 'cla', 'ClCG10G013390' => 'cla', 'COL.COLO4_11572' => 'col', 'COL.COLO4_11573' => 'col', 'COL.COLO4_13593' => 'col', 'Cpa.g.sc106.46' => 'cpa', 'Cpa.g.sc51.118' => 'cpa', 'Cpa.g.sc6.21' => 'cpa', 'Cpa.g.sc752.4' => 'cpa', 'Cre16.g677500' => 'cre', 'CsaV3_3G043250' => 'csa', 'CsaV3_4G000200' => 'csa', 'CsaV3_6G044100' => 'csa', 'CSS0004311' => 'camsi', 'CSS0010676' => 'camsi', 'CSS0015234' => 'camsi', 'DCAR_010821' => 'dca', 'DCAR_013686' => 'dca', 'Dinv04051' => 'din', 'Dinv26927' => 'din', 'Dinv37017' => 'din', 'Duzib106G1802' => 'dzi', 'Duzib128G1240' => 'dzi', 'Duzib147G1052' => 'dzi', 'Duzib177G0513' => 'dzi', 'Duzib177G0855' => 'dzi', 'Duzib187G0930' => 'dzi', 'ECA233G4150' => 'eca', 'ECA238G2391' => 'eca', 'ECA246G1468' => 'eca', 'EL10Ac3g06822' => 'bvu', 'EL10Ac6g15622' => 'bvu', 'Eucgr.A02099' => 'egr', 'Eucgr.H02306' => 'egr', 'FAN15G0974' => 'fan', 'FAN19G2035' => 'fan', 'FAN20G0294' => 'fan', 'FAN23G0291' => 'fan', 'FAN23G2641' => 'fan', 'FAN24G1279' => 'fan', 'FAN26G1723' => 'fan', 'FAN26G2890' => 'fan', 'FAN27G1384' => 'fan', 'FAN28G0637' => 'fan', 'FAN28G1685' => 'fan', 'FvH4_1g17660' => 'fve', 'FvH4_1g28150' => 'fve', 'FvH4_2g04460' => 'fve', 'Glyma.01G193950' => 'gma', 'Glyma.01G194000' => 'gma', 'Glyma.05G105300' => 'gma', 'Glyma.11G047900' => 'gma', 'Glyma.16G040900' => 'gma', 'Glyma.17G161100' => 'gma', 'Glyma.19G112200' => 'gma', 'Gohir.A02G151800' => 'ghi', 'Gohir.A11G215150' => 'ghi', 'Gohir.A11G296300' => 'ghi', 'Gohir.A12G077100' => 'ghi', 'Gohir.A13G172100' => 'ghi', 'Gohir.D03G028600' => 'ghi', 'Gohir.D11G208200' => 'ghi', 'Gohir.D11G310600' => 'ghi', 'Gohir.D12G075300' => 'ghi', 'Gohir.D13G178000' => 'ghi', 'Gorai.003G030100' => 'gra', 'Gorai.007G223200' => 'gra', 'Gorai.007G343200' => 'gra', 'Gorai.008G083800' => 'gra', 'Gorai.013G203300' => 'gra', 'GSVIVG01000111001' => 'vvi', 'GSVIVG01000120001' => 'vvi', 'GSVIVG01033406001' => 'vvi', 'GSVIVG01037835001' => 'vvi', 'HanXRQChr05g0130381' => 'han', 'HanXRQChr11g0350871' => 'han', 'HanXRQChr12g0376331' => 'han', 'HanXRQChr13g0397701' => 'han', 'HanXRQChr15g0472651' => 'han', 'Haze_10260' => 'cav', 'Haze_15286' => 'cav', 'Haze_19422' => 'cav', 'Hma1.2p1_0152F.1_g067710' => 'hma', 'Hma1.2p1_0479F.1_g161620' => 'hma', 'Hma1.2p1_0808F.1_g221610' => 'hma', 'Hma1.2p1_0852F.1_g228460' => 'hma', 'Hma1.2p1_3081F.1_g332450' => 'hma', 'Hma1.2p1_3538F.1_g336660' => 'hma', 'HPP92_009489' => 'vpl', 'HPP92_009543' => 'vpl', 'HPP92_014232' => 'vpl', 'HPP92_026493' => 'vpl', 'Hund13951' => 'sun', 'Hund16398' => 'sun', 'Hund24833' => 'sun', 'Lalb_Chr05g0225881' => 'lal', 'Lalb_Chr09g0323591' => 'lal', 'Lalb_Chr14g0364501' => 'lal', 'Lalb_Chr14g0364511' => 'lal', 'Lalb_Chr16g0376291' => 'lal', 'Lj1g0020420' => 'lja', 'Lj1g0027563' => 'lja', 'Lj2g0015524' => 'lja', 'Lj4A163T71' => 'lonja', 'Lj4g0021358' => 'lja', 'Lj8C584G0' => 'lonja', 'Lsat_1_v5_gn_2_83321' => 'lsa', 'Lsat_1_v5_gn_3_86160' => 'lsa', 'Lsat_1_v5_gn_6_37300' => 'lsa', 'Lsat_1_v5_gn_7_74021' => 'lsa', 'Lsat_1_v5_gn_8_27761' => 'lsa', 'Manes.08G144500' => 'mes', 'Manes.09G141100' => 'mes', 'Manes.10G083700' => 'mes', 'Manes.12G113800' => 'mes', 'Manes.13G111900' => 'mes', 'Mapoly0001s0168' => 'mpo', 'Mapoly0151s0024' => 'mpo', 'MBI01_g13085_MAGBIO' => 'mbi', 'MBI16_g07982_MAGBIO' => 'mbi', 'MCO01G791' => 'mco', 'MD02G1185400' => 'mdo', 'MD05G1100600' => 'mdo', 'MD10G1105800' => 'mdo', 'MD11G1100500' => 'mdo', 'MD12G1003900' => 'mdo', 'MD14G1002700' => 'mdo', 'MD15G1297000' => 'mdo', 'MD15G1430000' => 'mdo', 'Medtr4g097010' => 'mtr', 'Medtr5g015530' => 'mtr', 'Medtr7g085650' => 'mtr', 'MELO3C000465.2' => 'cme', 'MELO3C007632.2' => 'cme', 'MELO3C008444.2' => 'cme', 'MELO3C012940.2' => 'cme', 'MELO3C017519.2' => 'cme', 'MELO3C018012.2' => 'cme', 'MELO3C026885.2' => 'cme', 'MELO3C027505.2' => 'cme', 'MELO3C031763.2' => 'cme', 'Migut.K00007' => 'egut', 'Migut.L00216' => 'egut', 'MSTRG.10860' => 'ama', 'MSTRG.15352' => 'ama', 'Nitab4.5_0000036g0050' => 'nta', 'Nitab4.5_0000142g0020' => 'nta', 'Nitab4.5_0000394g0020' => 'nta', 'Nitab4.5_0000626g0070' => 'nta', 'Nitab4.5_0001079g0180' => 'nta', 'Nitab4.5_0002119g0120' => 'nta', 'Nitab4.5_0009367g0010' => 'nta', 'Nitab4.5_0010836g0020' => 'nta', 'Nn1g04558' => 'nnu', 'Nn2g15865' => 'nnu', 'Nn5g30583' => 'nnu', 'Nn7g35854' => 'nnu', 'Oeu013319.1' => 'oeu', 'Oeu014245.1' => 'oeu', 'Oeu014246.1' => 'oeu', 'Oeu017645.2' => 'oeu', 'Oeu048433.1' => 'oeu', 'Oeu054195.1' => 'oeu', 'Os03g0202001' => 'osa', 'Os07g0573100' => 'osa', 'Os11g0634800' => 'osa', 'Peaxi162Scf00249g00719' => 'pax', 'Peaxi162Scf00449g00313' => 'pax', 'Peaxi162Scf00463g00014' => 'pax', 'Peaxi162Scf00548g00648' => 'pax', 'PGR042G0262' => 'pgr', 'PGR102G2084' => 'pgr', 'PGSC0003DMG400003318' => 'stu', 'PGSC0003DMG400021446' => 'stu', 'PGSC0003DMG400023663' => 'stu', 'Phvul.001G111000' => 'pvu', 'Phvul.002G010900' => 'pvu', 'Phvul.003G235300' => 'pvu', 'Potri.001G293400' => 'ptr', 'Potri.009G088100' => 'ptr', 'Potri.013G057900' => 'ptr', 'Pp3c10_2670' => 'ppa', 'Pp3c23_21010' => 'ppa', 'Pp3c24_11970' => 'ppa', 'Pp3c2_19640' => 'ppa', 'PRCOL_00000153' => 'pco', 'Prupe.6G221200' => 'ppe', 'Prupe.7G004400' => 'ppe', 'Prupe.8G145000' => 'ppe', 'Psat0s1971g0360' => 'psa', 'Psat2g171480' => 'psa', 'Psat4g082000' => 'psa', 'PSO017G6474' => 'pso', 'PSO170G0740' => 'pso', 'PSO339G3322' => 'pso', 'PSO384G5135' => 'pso', 'QL07p018306' => 'qlo', 'QL11p030465' => 'qlo', 'RcHm_v2.0_Chr2g0107981' => 'rch', 'RcHm_v2.0_Chr3g0497061' => 'rch', 'RcHm_v2.0_Chr6g0253831' => 'rch', 'Rhsim08G0093700' => 'rsi', 'Sabra13G0051500' => 'sbr', 'Sabra16G0183300' => 'sbr', 'SalBow5G3056' => 'sbo', 'SalBow5G3476' => 'sbo', 'SalBow6G6032' => 'sbo', 'Sc16g0002900' => 'sci', 'Sc19g0006440' => 'sci', 'Sed0003357' => 'sed', 'Sed0009291' => 'sed', 'Sed0015268' => 'sed', 'Sed0015770' => 'sed', 'Sed0021142' => 'sed', 'SEGI_40361' => 'sgi', 'SGA_v2.0_scaffold13G06406' => 'sas', 'SGA_v2.0_scaffold90G27719' => 'sas', 'SGA_v2.0_scaffold94G28402' => 'sas', 'SMO119G0379' => 'smo', 'SMO337G0036' => 'smo', 'SMO367G0161' => 'smo', 'Solyc02g064650.3' => 'sly', 'Solyc02g092410.3' => 'sly', 'Solyc10g080680.3' => 'sly', 'Sopen02g014750' => 'spe', 'Sopen02g036960' => 'spe', 'Sopen10g031220' => 'spe', 'Sp2g29130' => 'spa', 'Sp3g02870' => 'spa', 'Sp3g27920' => 'spa', 'Sp7g35950' => 'spa', 'TAR623G1634' => 'tar', 'TAR628G0218' => 'tar', 'THA.LOC104807216' => 'tha', 'THA.LOC104819529' => 'tha', 'THA.LOC104820774' => 'tha', 'THA.LOC104821201' => 'tha', 'THA.LOC104824878' => 'tha', 'Thecc.01G072300' => 'tca', 'Thecc.02G211000' => 'tca', 'Thecc.05G294900' => 'tca', 'Thecc.05G295200' => 'tca', 'Thecc.05G296100' => 'tca', 'Thecc.05G296400' => 'tca', 'Thhalv10004693m.g' => 'esa', 'Thhalv10021488m.g' => 'esa', 'Thhalv10022805m.g' => 'esa', 'Thhalv10025861m.g' => 'esa', 'TPR.G24229' => 'tpr', 'TPR.G34854' => 'tpr', 'TPR.G5859' => 'tpr', 'TWI09G0994' => 'twi', 'TWI14G0342' => 'twi', 'TWI59G1184' => 'twi', 'TWI73G1078' => 'twi', 'unitig_736.g22478' => 'ugi', 'vmacro12566' => 'vma', 'vmacro18026' => 'vma', 'VMungo0251G2360' => 'vmu', 'VMungo1215G2007' => 'vmu', 'VMungo1383G3601' => 'vmu', 'Zm00001eb107420' => 'zma', 'Zm00001eb166390' => 'zma', 'Zm00001eb325100' => 'zma', 'Zm00001eb400760' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001721' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001721' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001721' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001721' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001721', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '376', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p00820' => 'bna', 'A03p45270' => 'bna', 'A03p65790' => 'bna', 'A05p43480' => 'bna', 'A06p32900' => 'bna', 'A08p23190' => 'bna', 'A09p10490' => 'bna', 'Aa31LG1G16070' => 'aar', 'Aa31LG5G14480' => 'aar', 'Aa31LG6G15330' => 'aar', 'Aa31LG8G12790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.257__258' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.373' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2818' => 'aag', 'Actinidia16428' => 'ach', 'Actinidia22082' => 'ach', 'Actinidia30552' => 'ach', 'Actinidia32840' => 'ach', 'Ah.03g140540' => 'amhyb', 'AL3G13790' => 'aly', 'AL3G46480' => 'aly', 'AL7G12190' => 'aly', 'AL8G43780' => 'aly', 'Aqoxy1G00483' => 'aox', 'Aqoxy5G00872' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W779N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8PRW0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFDA09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U78PA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XY76Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0PJVS' => 'arhy', 'AT2G14750' => 'ath', 'AT3G03900' => 'ath', 'AT4G39940' => 'ath', 'AT5G67520' => 'ath', 'ATR1153G097' => 'atr', 'Atru.chr2.1388' => 'acertr', 'Atru.chr3.1006' => 'acertr', 'AUR62004006' => 'cqu', 'AUR62032052' => 'cqu', 'AUR62032695' => 'cqu', 'AUR62040241' => 'cqu', 'BcaB02g09916' => 'bca', 'BcaB02g11537' => 'bca', 'BcaB03g12295' => 'bca', 'BcaB04g20047' => 'bca', 'BcaB08g34569' => 'bca', 'BcaC01g00331' => 'bca', 'BcaC01g03090' => 'bca', 'BcaC04g23069' => 'bca', 'BcaC04g23233' => 'bca', 'BcaC05g29893' => 'bca', 'BcaC05g30243' => 'bca', 'BcaC05g30292' => 'bca', 'BcaNung00915' => 'bca', 'BcaNung03406' => 'bca', 'BcaNung06389' => 'bca', 'BolC1t00093H' => 'bol', 'BolC3t17899H' => 'bol', 'BolC3t18221H' => 'bol', 'BolC3t20107H' => 'bol', 'BolC5t34967H' => 'bol', 'BolC7t46691H' => 'bol', 'BolC9t53980H' => 'bol', 'BolC9t54139H' => 'bol', 'BraA01t00084Z' => 'bra', 'BraA03t13660Z' => 'bra', 'BraA03t15632Z' => 'bra', 'BraA05t23087Z' => 'bra', 'BraA06t26221Z' => 'bra', 'BraA08t34277Z' => 'bra', 'BraA09t36694Z' => 'bra', 'C01p00930' => 'bna', 'C03p56120' => 'bna', 'C03p59570' => 'bna', 'C03p78550' => 'bna', 'C07p62770' => 'bna', 'C09p10870' => 'bna', 'C09p12460' => 'bna', 'CAN.G1075.33' => 'can', 'CAN.G128.62' => 'can', 'CAN.G775.9' => 'can', 'CANSAT01G2425' => 'cansat', 'CANSAT25G2073' => 'cansat', 'CARHR078020' => 'chi', 'CARHR246760' => 'chi', 'CARHR280070' => 'chi', 'CARHR286460' => 'chi', 'Carub.0003s0314' => 'cru', 'Carub.0003s2878' => 'cru', 'Carub.0007s0188' => 'cru', 'Carub.0008s2695' => 'cru', 'Ca_08268_v3' => 'car', 'Ca_22108_v3' => 'car', 'Ca_22115_v3' => 'car', 'Ca_24695_v3' => 'car', 'CBR_g28654' => 'cbr', 'Cc06_g23010' => 'ccan', 'Cc07_g07070' => 'ccan', 'CDE06G1587' => 'cde', 'Cfa004128' => 'cfa', 'Cfa004663' => 'cfa', 'Cfa016445' => 'cfa', 'Cfa026598' => 'cfa', 'Ciclev10022273m.g' => 'ccl', 'Ciclev10026239m.g' => 'ccl', 'CiPaw.01G004800' => 'cil', 'CiPaw.05G018100' => 'cil', 'CiPaw.09G002100' => 'cil', 'ClCG01G017560' => 'cla', 'ClCG10G010250' => 'cla', 'ClCG10G013390' => 'cla', 'COL.COLO4_11572' => 'col', 'COL.COLO4_11573' => 'col', 'COL.COLO4_13593' => 'col', 'Cpa.g.sc106.46' => 'cpa', 'Cpa.g.sc51.118' => 'cpa', 'Cpa.g.sc6.21' => 'cpa', 'Cpa.g.sc752.4' => 'cpa', 'Cre16.g677500' => 'cre', 'CsaV3_3G043250' => 'csa', 'CsaV3_4G000200' => 'csa', 'CsaV3_6G044100' => 'csa', 'CSS0004311' => 'camsi', 'CSS0010676' => 'camsi', 'CSS0015234' => 'camsi', 'DCAR_010821' => 'dca', 'DCAR_013686' => 'dca', 'Dinv04051' => 'din', 'Dinv26927' => 'din', 'Dinv37017' => 'din', 'Duzib106G1802' => 'dzi', 'Duzib128G1240' => 'dzi', 'Duzib147G1052' => 'dzi', 'Duzib177G0513' => 'dzi', 'Duzib177G0855' => 'dzi', 'Duzib187G0930' => 'dzi', 'ECA233G4150' => 'eca', 'ECA238G2391' => 'eca', 'ECA246G1468' => 'eca', 'EL10Ac3g06822' => 'bvu', 'EL10Ac6g15622' => 'bvu', 'Eucgr.A02099' => 'egr', 'Eucgr.H02306' => 'egr', 'FAN15G0974' => 'fan', 'FAN19G2035' => 'fan', 'FAN20G0294' => 'fan', 'FAN23G0291' => 'fan', 'FAN23G2641' => 'fan', 'FAN24G1279' => 'fan', 'FAN26G1723' => 'fan', 'FAN26G2890' => 'fan', 'FAN27G1384' => 'fan', 'FAN28G0637' => 'fan', 'FAN28G1685' => 'fan', 'FvH4_1g17660' => 'fve', 'FvH4_1g28150' => 'fve', 'FvH4_2g04460' => 'fve', 'Glyma.01G193950' => 'gma', 'Glyma.01G194000' => 'gma', 'Glyma.05G105300' => 'gma', 'Glyma.11G047900' => 'gma', 'Glyma.16G040900' => 'gma', 'Glyma.17G161100' => 'gma', 'Glyma.19G112200' => 'gma', 'Gohir.A02G151800' => 'ghi', 'Gohir.A11G215150' => 'ghi', 'Gohir.A11G296300' => 'ghi', 'Gohir.A12G077100' => 'ghi', 'Gohir.A13G172100' => 'ghi', 'Gohir.D03G028600' => 'ghi', 'Gohir.D11G208200' => 'ghi', 'Gohir.D11G310600' => 'ghi', 'Gohir.D12G075300' => 'ghi', 'Gohir.D13G178000' => 'ghi', 'Gorai.003G030100' => 'gra', 'Gorai.007G223200' => 'gra', 'Gorai.007G343200' => 'gra', 'Gorai.008G083800' => 'gra', 'Gorai.013G203300' => 'gra', 'GSVIVG01000111001' => 'vvi', 'GSVIVG01000120001' => 'vvi', 'GSVIVG01033406001' => 'vvi', 'GSVIVG01037835001' => 'vvi', 'HanXRQChr05g0130381' => 'han', 'HanXRQChr11g0350871' => 'han', 'HanXRQChr12g0376331' => 'han', 'HanXRQChr13g0397701' => 'han', 'HanXRQChr15g0472651' => 'han', 'Haze_10260' => 'cav', 'Haze_15286' => 'cav', 'Haze_19422' => 'cav', 'Hma1.2p1_0152F.1_g067710' => 'hma', 'Hma1.2p1_0479F.1_g161620' => 'hma', 'Hma1.2p1_0808F.1_g221610' => 'hma', 'Hma1.2p1_0852F.1_g228460' => 'hma', 'Hma1.2p1_3081F.1_g332450' => 'hma', 'Hma1.2p1_3538F.1_g336660' => 'hma', 'HPP92_009489' => 'vpl', 'HPP92_009543' => 'vpl', 'HPP92_014232' => 'vpl', 'HPP92_026493' => 'vpl', 'Hund13951' => 'sun', 'Hund16398' => 'sun', 'Hund24833' => 'sun', 'Lalb_Chr05g0225881' => 'lal', 'Lalb_Chr09g0323591' => 'lal', 'Lalb_Chr14g0364501' => 'lal', 'Lalb_Chr14g0364511' => 'lal', 'Lalb_Chr16g0376291' => 'lal', 'Lj1g0020420' => 'lja', 'Lj1g0027563' => 'lja', 'Lj2g0015524' => 'lja', 'Lj4A163T71' => 'lonja', 'Lj4g0021358' => 'lja', 'Lj8C584G0' => 'lonja', 'Lsat_1_v5_gn_2_83321' => 'lsa', 'Lsat_1_v5_gn_3_86160' => 'lsa', 'Lsat_1_v5_gn_6_37300' => 'lsa', 'Lsat_1_v5_gn_7_74021' => 'lsa', 'Lsat_1_v5_gn_8_27761' => 'lsa', 'Manes.08G144500' => 'mes', 'Manes.09G141100' => 'mes', 'Manes.10G083700' => 'mes', 'Manes.12G113800' => 'mes', 'Manes.13G111900' => 'mes', 'Mapoly0001s0168' => 'mpo', 'Mapoly0151s0024' => 'mpo', 'MBI01_g13085_MAGBIO' => 'mbi', 'MBI16_g07982_MAGBIO' => 'mbi', 'MCO01G791' => 'mco', 'MD02G1185400' => 'mdo', 'MD05G1100600' => 'mdo', 'MD10G1105800' => 'mdo', 'MD11G1100500' => 'mdo', 'MD12G1003900' => 'mdo', 'MD14G1002700' => 'mdo', 'MD15G1297000' => 'mdo', 'MD15G1430000' => 'mdo', 'Medtr4g097010' => 'mtr', 'Medtr5g015530' => 'mtr', 'Medtr7g085650' => 'mtr', 'MELO3C000465.2' => 'cme', 'MELO3C007632.2' => 'cme', 'MELO3C008444.2' => 'cme', 'MELO3C012940.2' => 'cme', 'MELO3C017519.2' => 'cme', 'MELO3C018012.2' => 'cme', 'MELO3C026885.2' => 'cme', 'MELO3C027505.2' => 'cme', 'MELO3C031763.2' => 'cme', 'Migut.K00007' => 'egut', 'Migut.L00216' => 'egut', 'MSTRG.10860' => 'ama', 'MSTRG.15352' => 'ama', 'Nitab4.5_0000036g0050' => 'nta', 'Nitab4.5_0000142g0020' => 'nta', 'Nitab4.5_0000394g0020' => 'nta', 'Nitab4.5_0000626g0070' => 'nta', 'Nitab4.5_0001079g0180' => 'nta', 'Nitab4.5_0002119g0120' => 'nta', 'Nitab4.5_0009367g0010' => 'nta', 'Nitab4.5_0010836g0020' => 'nta', 'Nn1g04558' => 'nnu', 'Nn2g15865' => 'nnu', 'Nn5g30583' => 'nnu', 'Nn7g35854' => 'nnu', 'Oeu013319.1' => 'oeu', 'Oeu014245.1' => 'oeu', 'Oeu014246.1' => 'oeu', 'Oeu017645.2' => 'oeu', 'Oeu048433.1' => 'oeu', 'Oeu054195.1' => 'oeu', 'Os03g0202001' => 'osa', 'Os07g0573100' => 'osa', 'Os11g0634800' => 'osa', 'Peaxi162Scf00249g00719' => 'pax', 'Peaxi162Scf00449g00313' => 'pax', 'Peaxi162Scf00463g00014' => 'pax', 'Peaxi162Scf00548g00648' => 'pax', 'PGR042G0262' => 'pgr', 'PGR102G2084' => 'pgr', 'PGSC0003DMG400003318' => 'stu', 'PGSC0003DMG400021446' => 'stu', 'PGSC0003DMG400023663' => 'stu', 'Phvul.001G111000' => 'pvu', 'Phvul.002G010900' => 'pvu', 'Phvul.003G235300' => 'pvu', 'Potri.001G293400' => 'ptr', 'Potri.009G088100' => 'ptr', 'Potri.013G057900' => 'ptr', 'Pp3c10_2670' => 'ppa', 'Pp3c23_21010' => 'ppa', 'Pp3c24_11970' => 'ppa', 'Pp3c2_19640' => 'ppa', 'PRCOL_00000153' => 'pco', 'Prupe.6G221200' => 'ppe', 'Prupe.7G004400' => 'ppe', 'Prupe.8G145000' => 'ppe', 'Psat0s1971g0360' => 'psa', 'Psat2g171480' => 'psa', 'Psat4g082000' => 'psa', 'PSO017G6474' => 'pso', 'PSO170G0740' => 'pso', 'PSO339G3322' => 'pso', 'PSO384G5135' => 'pso', 'QL07p018306' => 'qlo', 'QL11p030465' => 'qlo', 'RcHm_v2.0_Chr2g0107981' => 'rch', 'RcHm_v2.0_Chr3g0497061' => 'rch', 'RcHm_v2.0_Chr6g0253831' => 'rch', 'Rhsim08G0093700' => 'rsi', 'Sabra13G0051500' => 'sbr', 'Sabra16G0183300' => 'sbr', 'SalBow5G3056' => 'sbo', 'SalBow5G3476' => 'sbo', 'SalBow6G6032' => 'sbo', 'Sc16g0002900' => 'sci', 'Sc19g0006440' => 'sci', 'Sed0003357' => 'sed', 'Sed0009291' => 'sed', 'Sed0015268' => 'sed', 'Sed0015770' => 'sed', 'Sed0021142' => 'sed', 'SEGI_40361' => 'sgi', 'SGA_v2.0_scaffold13G06406' => 'sas', 'SGA_v2.0_scaffold90G27719' => 'sas', 'SGA_v2.0_scaffold94G28402' => 'sas', 'SMO119G0379' => 'smo', 'SMO337G0036' => 'smo', 'SMO367G0161' => 'smo', 'Solyc02g064650.3' => 'sly', 'Solyc02g092410.3' => 'sly', 'Solyc10g080680.3' => 'sly', 'Sopen02g014750' => 'spe', 'Sopen02g036960' => 'spe', 'Sopen10g031220' => 'spe', 'Sp2g29130' => 'spa', 'Sp3g02870' => 'spa', 'Sp3g27920' => 'spa', 'Sp7g35950' => 'spa', 'TAR623G1634' => 'tar', 'TAR628G0218' => 'tar', 'THA.LOC104807216' => 'tha', 'THA.LOC104819529' => 'tha', 'THA.LOC104820774' => 'tha', 'THA.LOC104821201' => 'tha', 'THA.LOC104824878' => 'tha', 'Thecc.01G072300' => 'tca', 'Thecc.02G211000' => 'tca', 'Thecc.05G294900' => 'tca', 'Thecc.05G295200' => 'tca', 'Thecc.05G296100' => 'tca', 'Thecc.05G296400' => 'tca', 'Thhalv10004693m.g' => 'esa', 'Thhalv10021488m.g' => 'esa', 'Thhalv10022805m.g' => 'esa', 'Thhalv10025861m.g' => 'esa', 'TPR.G24229' => 'tpr', 'TPR.G34854' => 'tpr', 'TPR.G5859' => 'tpr', 'TWI09G0994' => 'twi', 'TWI14G0342' => 'twi', 'TWI59G1184' => 'twi', 'TWI73G1078' => 'twi', 'unitig_736.g22478' => 'ugi', 'vmacro12566' => 'vma', 'vmacro18026' => 'vma', 'VMungo0251G2360' => 'vmu', 'VMungo1215G2007' => 'vmu', 'VMungo1383G3601' => 'vmu', 'Zm00001eb107420' => 'zma', 'Zm00001eb166390' => 'zma', 'Zm00001eb325100' => 'zma', 'Zm00001eb400760' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001721', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001721' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001721', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '376', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001721' ) ), 'genes' => array( 'A01p00820' => 'bna', 'A03p45270' => 'bna', 'A03p65790' => 'bna', 'A05p43480' => 'bna', 'A06p32900' => 'bna', 'A08p23190' => 'bna', 'A09p10490' => 'bna', 'Aa31LG1G16070' => 'aar', 'Aa31LG5G14480' => 'aar', 'Aa31LG6G15330' => 'aar', 'Aa31LG8G12790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.257__258' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.373' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2818' => 'aag', 'Actinidia16428' => 'ach', 'Actinidia22082' => 'ach', 'Actinidia30552' => 'ach', 'Actinidia32840' => 'ach', 'Ah.03g140540' => 'amhyb', 'AL3G13790' => 'aly', 'AL3G46480' => 'aly', 'AL7G12190' => 'aly', 'AL8G43780' => 'aly', 'Aqoxy1G00483' => 'aox', 'Aqoxy5G00872' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W779N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8PRW0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFDA09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U78PA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XY76Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0PJVS' => 'arhy', 'AT2G14750' => 'ath', 'AT3G03900' => 'ath', 'AT4G39940' => 'ath', 'AT5G67520' => 'ath', 'ATR1153G097' => 'atr', 'Atru.chr2.1388' => 'acertr', 'Atru.chr3.1006' => 'acertr', 'AUR62004006' => 'cqu', 'AUR62032052' => 'cqu', 'AUR62032695' => 'cqu', 'AUR62040241' => 'cqu', 'BcaB02g09916' => 'bca', 'BcaB02g11537' => 'bca', 'BcaB03g12295' => 'bca', 'BcaB04g20047' => 'bca', 'BcaB08g34569' => 'bca', 'BcaC01g00331' => 'bca', 'BcaC01g03090' => 'bca', 'BcaC04g23069' => 'bca', 'BcaC04g23233' => 'bca', 'BcaC05g29893' => 'bca', 'BcaC05g30243' => 'bca', 'BcaC05g30292' => 'bca', 'BcaNung00915' => 'bca', 'BcaNung03406' => 'bca', 'BcaNung06389' => 'bca', 'BolC1t00093H' => 'bol', 'BolC3t17899H' => 'bol', 'BolC3t18221H' => 'bol', 'BolC3t20107H' => 'bol', 'BolC5t34967H' => 'bol', 'BolC7t46691H' => 'bol', 'BolC9t53980H' => 'bol', 'BolC9t54139H' => 'bol', 'BraA01t00084Z' => 'bra', 'BraA03t13660Z' => 'bra', 'BraA03t15632Z' => 'bra', 'BraA05t23087Z' => 'bra', 'BraA06t26221Z' => 'bra', 'BraA08t34277Z' => 'bra', 'BraA09t36694Z' => 'bra', 'C01p00930' => 'bna', 'C03p56120' => 'bna', 'C03p59570' => 'bna', 'C03p78550' => 'bna', 'C07p62770' => 'bna', 'C09p10870' => 'bna', 'C09p12460' => 'bna', 'CAN.G1075.33' => 'can', 'CAN.G128.62' => 'can', 'CAN.G775.9' => 'can', 'CANSAT01G2425' => 'cansat', 'CANSAT25G2073' => 'cansat', 'CARHR078020' => 'chi', 'CARHR246760' => 'chi', 'CARHR280070' => 'chi', 'CARHR286460' => 'chi', 'Carub.0003s0314' => 'cru', 'Carub.0003s2878' => 'cru', 'Carub.0007s0188' => 'cru', 'Carub.0008s2695' => 'cru', 'Ca_08268_v3' => 'car', 'Ca_22108_v3' => 'car', 'Ca_22115_v3' => 'car', 'Ca_24695_v3' => 'car', 'CBR_g28654' => 'cbr', 'Cc06_g23010' => 'ccan', 'Cc07_g07070' => 'ccan', 'CDE06G1587' => 'cde', 'Cfa004128' => 'cfa', 'Cfa004663' => 'cfa', 'Cfa016445' => 'cfa', 'Cfa026598' => 'cfa', 'Ciclev10022273m.g' => 'ccl', 'Ciclev10026239m.g' => 'ccl', 'CiPaw.01G004800' => 'cil', 'CiPaw.05G018100' => 'cil', 'CiPaw.09G002100' => 'cil', 'ClCG01G017560' => 'cla', 'ClCG10G010250' => 'cla', 'ClCG10G013390' => 'cla', 'COL.COLO4_11572' => 'col', 'COL.COLO4_11573' => 'col', 'COL.COLO4_13593' => 'col', 'Cpa.g.sc106.46' => 'cpa', 'Cpa.g.sc51.118' => 'cpa', 'Cpa.g.sc6.21' => 'cpa', 'Cpa.g.sc752.4' => 'cpa', 'Cre16.g677500' => 'cre', 'CsaV3_3G043250' => 'csa', 'CsaV3_4G000200' => 'csa', 'CsaV3_6G044100' => 'csa', 'CSS0004311' => 'camsi', 'CSS0010676' => 'camsi', 'CSS0015234' => 'camsi', 'DCAR_010821' => 'dca', 'DCAR_013686' => 'dca', 'Dinv04051' => 'din', 'Dinv26927' => 'din', 'Dinv37017' => 'din', 'Duzib106G1802' => 'dzi', 'Duzib128G1240' => 'dzi', 'Duzib147G1052' => 'dzi', 'Duzib177G0513' => 'dzi', 'Duzib177G0855' => 'dzi', 'Duzib187G0930' => 'dzi', 'ECA233G4150' => 'eca', 'ECA238G2391' => 'eca', 'ECA246G1468' => 'eca', 'EL10Ac3g06822' => 'bvu', 'EL10Ac6g15622' => 'bvu', 'Eucgr.A02099' => 'egr', 'Eucgr.H02306' => 'egr', 'FAN15G0974' => 'fan', 'FAN19G2035' => 'fan', 'FAN20G0294' => 'fan', 'FAN23G0291' => 'fan', 'FAN23G2641' => 'fan', 'FAN24G1279' => 'fan', 'FAN26G1723' => 'fan', 'FAN26G2890' => 'fan', 'FAN27G1384' => 'fan', 'FAN28G0637' => 'fan', 'FAN28G1685' => 'fan', 'FvH4_1g17660' => 'fve', 'FvH4_1g28150' => 'fve', 'FvH4_2g04460' => 'fve', 'Glyma.01G193950' => 'gma', 'Glyma.01G194000' => 'gma', 'Glyma.05G105300' => 'gma', 'Glyma.11G047900' => 'gma', 'Glyma.16G040900' => 'gma', 'Glyma.17G161100' => 'gma', 'Glyma.19G112200' => 'gma', 'Gohir.A02G151800' => 'ghi', 'Gohir.A11G215150' => 'ghi', 'Gohir.A11G296300' => 'ghi', 'Gohir.A12G077100' => 'ghi', 'Gohir.A13G172100' => 'ghi', 'Gohir.D03G028600' => 'ghi', 'Gohir.D11G208200' => 'ghi', 'Gohir.D11G310600' => 'ghi', 'Gohir.D12G075300' => 'ghi', 'Gohir.D13G178000' => 'ghi', 'Gorai.003G030100' => 'gra', 'Gorai.007G223200' => 'gra', 'Gorai.007G343200' => 'gra', 'Gorai.008G083800' => 'gra', 'Gorai.013G203300' => 'gra', 'GSVIVG01000111001' => 'vvi', 'GSVIVG01000120001' => 'vvi', 'GSVIVG01033406001' => 'vvi', 'GSVIVG01037835001' => 'vvi', 'HanXRQChr05g0130381' => 'han', 'HanXRQChr11g0350871' => 'han', 'HanXRQChr12g0376331' => 'han', 'HanXRQChr13g0397701' => 'han', 'HanXRQChr15g0472651' => 'han', 'Haze_10260' => 'cav', 'Haze_15286' => 'cav', 'Haze_19422' => 'cav', 'Hma1.2p1_0152F.1_g067710' => 'hma', 'Hma1.2p1_0479F.1_g161620' => 'hma', 'Hma1.2p1_0808F.1_g221610' => 'hma', 'Hma1.2p1_0852F.1_g228460' => 'hma', 'Hma1.2p1_3081F.1_g332450' => 'hma', 'Hma1.2p1_3538F.1_g336660' => 'hma', 'HPP92_009489' => 'vpl', 'HPP92_009543' => 'vpl', 'HPP92_014232' => 'vpl', 'HPP92_026493' => 'vpl', 'Hund13951' => 'sun', 'Hund16398' => 'sun', 'Hund24833' => 'sun', 'Lalb_Chr05g0225881' => 'lal', 'Lalb_Chr09g0323591' => 'lal', 'Lalb_Chr14g0364501' => 'lal', 'Lalb_Chr14g0364511' => 'lal', 'Lalb_Chr16g0376291' => 'lal', 'Lj1g0020420' => 'lja', 'Lj1g0027563' => 'lja', 'Lj2g0015524' => 'lja', 'Lj4A163T71' => 'lonja', 'Lj4g0021358' => 'lja', 'Lj8C584G0' => 'lonja', 'Lsat_1_v5_gn_2_83321' => 'lsa', 'Lsat_1_v5_gn_3_86160' => 'lsa', 'Lsat_1_v5_gn_6_37300' => 'lsa', 'Lsat_1_v5_gn_7_74021' => 'lsa', 'Lsat_1_v5_gn_8_27761' => 'lsa', 'Manes.08G144500' => 'mes', 'Manes.09G141100' => 'mes', 'Manes.10G083700' => 'mes', 'Manes.12G113800' => 'mes', 'Manes.13G111900' => 'mes', 'Mapoly0001s0168' => 'mpo', 'Mapoly0151s0024' => 'mpo', 'MBI01_g13085_MAGBIO' => 'mbi', 'MBI16_g07982_MAGBIO' => 'mbi', 'MCO01G791' => 'mco', 'MD02G1185400' => 'mdo', 'MD05G1100600' => 'mdo', 'MD10G1105800' => 'mdo', 'MD11G1100500' => 'mdo', 'MD12G1003900' => 'mdo', 'MD14G1002700' => 'mdo', 'MD15G1297000' => 'mdo', 'MD15G1430000' => 'mdo', 'Medtr4g097010' => 'mtr', 'Medtr5g015530' => 'mtr', 'Medtr7g085650' => 'mtr', 'MELO3C000465.2' => 'cme', 'MELO3C007632.2' => 'cme', 'MELO3C008444.2' => 'cme', 'MELO3C012940.2' => 'cme', 'MELO3C017519.2' => 'cme', 'MELO3C018012.2' => 'cme', 'MELO3C026885.2' => 'cme', 'MELO3C027505.2' => 'cme', 'MELO3C031763.2' => 'cme', 'Migut.K00007' => 'egut', 'Migut.L00216' => 'egut', 'MSTRG.10860' => 'ama', 'MSTRG.15352' => 'ama', 'Nitab4.5_0000036g0050' => 'nta', 'Nitab4.5_0000142g0020' => 'nta', 'Nitab4.5_0000394g0020' => 'nta', 'Nitab4.5_0000626g0070' => 'nta', 'Nitab4.5_0001079g0180' => 'nta', 'Nitab4.5_0002119g0120' => 'nta', 'Nitab4.5_0009367g0010' => 'nta', 'Nitab4.5_0010836g0020' => 'nta', 'Nn1g04558' => 'nnu', 'Nn2g15865' => 'nnu', 'Nn5g30583' => 'nnu', 'Nn7g35854' => 'nnu', 'Oeu013319.1' => 'oeu', 'Oeu014245.1' => 'oeu', 'Oeu014246.1' => 'oeu', 'Oeu017645.2' => 'oeu', 'Oeu048433.1' => 'oeu', 'Oeu054195.1' => 'oeu', 'Os03g0202001' => 'osa', 'Os07g0573100' => 'osa', 'Os11g0634800' => 'osa', 'Peaxi162Scf00249g00719' => 'pax', 'Peaxi162Scf00449g00313' => 'pax', 'Peaxi162Scf00463g00014' => 'pax', 'Peaxi162Scf00548g00648' => 'pax', 'PGR042G0262' => 'pgr', 'PGR102G2084' => 'pgr', 'PGSC0003DMG400003318' => 'stu', 'PGSC0003DMG400021446' => 'stu', 'PGSC0003DMG400023663' => 'stu', 'Phvul.001G111000' => 'pvu', 'Phvul.002G010900' => 'pvu', 'Phvul.003G235300' => 'pvu', 'Potri.001G293400' => 'ptr', 'Potri.009G088100' => 'ptr', 'Potri.013G057900' => 'ptr', 'Pp3c10_2670' => 'ppa', 'Pp3c23_21010' => 'ppa', 'Pp3c24_11970' => 'ppa', 'Pp3c2_19640' => 'ppa', 'PRCOL_00000153' => 'pco', 'Prupe.6G221200' => 'ppe', 'Prupe.7G004400' => 'ppe', 'Prupe.8G145000' => 'ppe', 'Psat0s1971g0360' => 'psa', 'Psat2g171480' => 'psa', 'Psat4g082000' => 'psa', 'PSO017G6474' => 'pso', 'PSO170G0740' => 'pso', 'PSO339G3322' => 'pso', 'PSO384G5135' => 'pso', 'QL07p018306' => 'qlo', 'QL11p030465' => 'qlo', 'RcHm_v2.0_Chr2g0107981' => 'rch', 'RcHm_v2.0_Chr3g0497061' => 'rch', 'RcHm_v2.0_Chr6g0253831' => 'rch', 'Rhsim08G0093700' => 'rsi', 'Sabra13G0051500' => 'sbr', 'Sabra16G0183300' => 'sbr', 'SalBow5G3056' => 'sbo', 'SalBow5G3476' => 'sbo', 'SalBow6G6032' => 'sbo', 'Sc16g0002900' => 'sci', 'Sc19g0006440' => 'sci', 'Sed0003357' => 'sed', 'Sed0009291' => 'sed', 'Sed0015268' => 'sed', 'Sed0015770' => 'sed', 'Sed0021142' => 'sed', 'SEGI_40361' => 'sgi', 'SGA_v2.0_scaffold13G06406' => 'sas', 'SGA_v2.0_scaffold90G27719' => 'sas', 'SGA_v2.0_scaffold94G28402' => 'sas', 'SMO119G0379' => 'smo', 'SMO337G0036' => 'smo', 'SMO367G0161' => 'smo', 'Solyc02g064650.3' => 'sly', 'Solyc02g092410.3' => 'sly', 'Solyc10g080680.3' => 'sly', 'Sopen02g014750' => 'spe', 'Sopen02g036960' => 'spe', 'Sopen10g031220' => 'spe', 'Sp2g29130' => 'spa', 'Sp3g02870' => 'spa', 'Sp3g27920' => 'spa', 'Sp7g35950' => 'spa', 'TAR623G1634' => 'tar', 'TAR628G0218' => 'tar', 'THA.LOC104807216' => 'tha', 'THA.LOC104819529' => 'tha', 'THA.LOC104820774' => 'tha', 'THA.LOC104821201' => 'tha', 'THA.LOC104824878' => 'tha', 'Thecc.01G072300' => 'tca', 'Thecc.02G211000' => 'tca', 'Thecc.05G294900' => 'tca', 'Thecc.05G295200' => 'tca', 'Thecc.05G296100' => 'tca', 'Thecc.05G296400' => 'tca', 'Thhalv10004693m.g' => 'esa', 'Thhalv10021488m.g' => 'esa', 'Thhalv10022805m.g' => 'esa', 'Thhalv10025861m.g' => 'esa', 'TPR.G24229' => 'tpr', 'TPR.G34854' => 'tpr', 'TPR.G5859' => 'tpr', 'TWI09G0994' => 'twi', 'TWI14G0342' => 'twi', 'TWI59G1184' => 'twi', 'TWI73G1078' => 'twi', 'unitig_736.g22478' => 'ugi', 'vmacro12566' => 'vma', 'vmacro18026' => 'vma', 'VMungo0251G2360' => 'vmu', 'VMungo1215G2007' => 'vmu', 'VMungo1383G3601' => 'vmu', 'Zm00001eb107420' => 'zma', 'Zm00001eb166390' => 'zma', 'Zm00001eb325100' => 'zma', 'Zm00001eb400760' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001721' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001721' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001721' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001721' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001721', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '376', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p00820' => 'bna', 'A03p45270' => 'bna', 'A03p65790' => 'bna', 'A05p43480' => 'bna', 'A06p32900' => 'bna', 'A08p23190' => 'bna', 'A09p10490' => 'bna', 'Aa31LG1G16070' => 'aar', 'Aa31LG5G14480' => 'aar', 'Aa31LG6G15330' => 'aar', 'Aa31LG8G12790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.257__258' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.373' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2818' => 'aag', 'Actinidia16428' => 'ach', 'Actinidia22082' => 'ach', 'Actinidia30552' => 'ach', 'Actinidia32840' => 'ach', 'Ah.03g140540' => 'amhyb', 'AL3G13790' => 'aly', 'AL3G46480' => 'aly', 'AL7G12190' => 'aly', 'AL8G43780' => 'aly', 'Aqoxy1G00483' => 'aox', 'Aqoxy5G00872' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W779N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8PRW0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFDA09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U78PA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XY76Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0PJVS' => 'arhy', 'AT2G14750' => 'ath', 'AT3G03900' => 'ath', 'AT4G39940' => 'ath', 'AT5G67520' => 'ath', 'ATR1153G097' => 'atr', 'Atru.chr2.1388' => 'acertr', 'Atru.chr3.1006' => 'acertr', 'AUR62004006' => 'cqu', 'AUR62032052' => 'cqu', 'AUR62032695' => 'cqu', 'AUR62040241' => 'cqu', 'BcaB02g09916' => 'bca', 'BcaB02g11537' => 'bca', 'BcaB03g12295' => 'bca', 'BcaB04g20047' => 'bca', 'BcaB08g34569' => 'bca', 'BcaC01g00331' => 'bca', 'BcaC01g03090' => 'bca', 'BcaC04g23069' => 'bca', 'BcaC04g23233' => 'bca', 'BcaC05g29893' => 'bca', 'BcaC05g30243' => 'bca', 'BcaC05g30292' => 'bca', 'BcaNung00915' => 'bca', 'BcaNung03406' => 'bca', 'BcaNung06389' => 'bca', 'BolC1t00093H' => 'bol', 'BolC3t17899H' => 'bol', 'BolC3t18221H' => 'bol', 'BolC3t20107H' => 'bol', 'BolC5t34967H' => 'bol', 'BolC7t46691H' => 'bol', 'BolC9t53980H' => 'bol', 'BolC9t54139H' => 'bol', 'BraA01t00084Z' => 'bra', 'BraA03t13660Z' => 'bra', 'BraA03t15632Z' => 'bra', 'BraA05t23087Z' => 'bra', 'BraA06t26221Z' => 'bra', 'BraA08t34277Z' => 'bra', 'BraA09t36694Z' => 'bra', 'C01p00930' => 'bna', 'C03p56120' => 'bna', 'C03p59570' => 'bna', 'C03p78550' => 'bna', 'C07p62770' => 'bna', 'C09p10870' => 'bna', 'C09p12460' => 'bna', 'CAN.G1075.33' => 'can', 'CAN.G128.62' => 'can', 'CAN.G775.9' => 'can', 'CANSAT01G2425' => 'cansat', 'CANSAT25G2073' => 'cansat', 'CARHR078020' => 'chi', 'CARHR246760' => 'chi', 'CARHR280070' => 'chi', 'CARHR286460' => 'chi', 'Carub.0003s0314' => 'cru', 'Carub.0003s2878' => 'cru', 'Carub.0007s0188' => 'cru', 'Carub.0008s2695' => 'cru', 'Ca_08268_v3' => 'car', 'Ca_22108_v3' => 'car', 'Ca_22115_v3' => 'car', 'Ca_24695_v3' => 'car', 'CBR_g28654' => 'cbr', 'Cc06_g23010' => 'ccan', 'Cc07_g07070' => 'ccan', 'CDE06G1587' => 'cde', 'Cfa004128' => 'cfa', 'Cfa004663' => 'cfa', 'Cfa016445' => 'cfa', 'Cfa026598' => 'cfa', 'Ciclev10022273m.g' => 'ccl', 'Ciclev10026239m.g' => 'ccl', 'CiPaw.01G004800' => 'cil', 'CiPaw.05G018100' => 'cil', 'CiPaw.09G002100' => 'cil', 'ClCG01G017560' => 'cla', 'ClCG10G010250' => 'cla', 'ClCG10G013390' => 'cla', 'COL.COLO4_11572' => 'col', 'COL.COLO4_11573' => 'col', 'COL.COLO4_13593' => 'col', 'Cpa.g.sc106.46' => 'cpa', 'Cpa.g.sc51.118' => 'cpa', 'Cpa.g.sc6.21' => 'cpa', 'Cpa.g.sc752.4' => 'cpa', 'Cre16.g677500' => 'cre', 'CsaV3_3G043250' => 'csa', 'CsaV3_4G000200' => 'csa', 'CsaV3_6G044100' => 'csa', 'CSS0004311' => 'camsi', 'CSS0010676' => 'camsi', 'CSS0015234' => 'camsi', 'DCAR_010821' => 'dca', 'DCAR_013686' => 'dca', 'Dinv04051' => 'din', 'Dinv26927' => 'din', 'Dinv37017' => 'din', 'Duzib106G1802' => 'dzi', 'Duzib128G1240' => 'dzi', 'Duzib147G1052' => 'dzi', 'Duzib177G0513' => 'dzi', 'Duzib177G0855' => 'dzi', 'Duzib187G0930' => 'dzi', 'ECA233G4150' => 'eca', 'ECA238G2391' => 'eca', 'ECA246G1468' => 'eca', 'EL10Ac3g06822' => 'bvu', 'EL10Ac6g15622' => 'bvu', 'Eucgr.A02099' => 'egr', 'Eucgr.H02306' => 'egr', 'FAN15G0974' => 'fan', 'FAN19G2035' => 'fan', 'FAN20G0294' => 'fan', 'FAN23G0291' => 'fan', 'FAN23G2641' => 'fan', 'FAN24G1279' => 'fan', 'FAN26G1723' => 'fan', 'FAN26G2890' => 'fan', 'FAN27G1384' => 'fan', 'FAN28G0637' => 'fan', 'FAN28G1685' => 'fan', 'FvH4_1g17660' => 'fve', 'FvH4_1g28150' => 'fve', 'FvH4_2g04460' => 'fve', 'Glyma.01G193950' => 'gma', 'Glyma.01G194000' => 'gma', 'Glyma.05G105300' => 'gma', 'Glyma.11G047900' => 'gma', 'Glyma.16G040900' => 'gma', 'Glyma.17G161100' => 'gma', 'Glyma.19G112200' => 'gma', 'Gohir.A02G151800' => 'ghi', 'Gohir.A11G215150' => 'ghi', 'Gohir.A11G296300' => 'ghi', 'Gohir.A12G077100' => 'ghi', 'Gohir.A13G172100' => 'ghi', 'Gohir.D03G028600' => 'ghi', 'Gohir.D11G208200' => 'ghi', 'Gohir.D11G310600' => 'ghi', 'Gohir.D12G075300' => 'ghi', 'Gohir.D13G178000' => 'ghi', 'Gorai.003G030100' => 'gra', 'Gorai.007G223200' => 'gra', 'Gorai.007G343200' => 'gra', 'Gorai.008G083800' => 'gra', 'Gorai.013G203300' => 'gra', 'GSVIVG01000111001' => 'vvi', 'GSVIVG01000120001' => 'vvi', 'GSVIVG01033406001' => 'vvi', 'GSVIVG01037835001' => 'vvi', 'HanXRQChr05g0130381' => 'han', 'HanXRQChr11g0350871' => 'han', 'HanXRQChr12g0376331' => 'han', 'HanXRQChr13g0397701' => 'han', 'HanXRQChr15g0472651' => 'han', 'Haze_10260' => 'cav', 'Haze_15286' => 'cav', 'Haze_19422' => 'cav', 'Hma1.2p1_0152F.1_g067710' => 'hma', 'Hma1.2p1_0479F.1_g161620' => 'hma', 'Hma1.2p1_0808F.1_g221610' => 'hma', 'Hma1.2p1_0852F.1_g228460' => 'hma', 'Hma1.2p1_3081F.1_g332450' => 'hma', 'Hma1.2p1_3538F.1_g336660' => 'hma', 'HPP92_009489' => 'vpl', 'HPP92_009543' => 'vpl', 'HPP92_014232' => 'vpl', 'HPP92_026493' => 'vpl', 'Hund13951' => 'sun', 'Hund16398' => 'sun', 'Hund24833' => 'sun', 'Lalb_Chr05g0225881' => 'lal', 'Lalb_Chr09g0323591' => 'lal', 'Lalb_Chr14g0364501' => 'lal', 'Lalb_Chr14g0364511' => 'lal', 'Lalb_Chr16g0376291' => 'lal', 'Lj1g0020420' => 'lja', 'Lj1g0027563' => 'lja', 'Lj2g0015524' => 'lja', 'Lj4A163T71' => 'lonja', 'Lj4g0021358' => 'lja', 'Lj8C584G0' => 'lonja', 'Lsat_1_v5_gn_2_83321' => 'lsa', 'Lsat_1_v5_gn_3_86160' => 'lsa', 'Lsat_1_v5_gn_6_37300' => 'lsa', 'Lsat_1_v5_gn_7_74021' => 'lsa', 'Lsat_1_v5_gn_8_27761' => 'lsa', 'Manes.08G144500' => 'mes', 'Manes.09G141100' => 'mes', 'Manes.10G083700' => 'mes', 'Manes.12G113800' => 'mes', 'Manes.13G111900' => 'mes', 'Mapoly0001s0168' => 'mpo', 'Mapoly0151s0024' => 'mpo', 'MBI01_g13085_MAGBIO' => 'mbi', 'MBI16_g07982_MAGBIO' => 'mbi', 'MCO01G791' => 'mco', 'MD02G1185400' => 'mdo', 'MD05G1100600' => 'mdo', 'MD10G1105800' => 'mdo', 'MD11G1100500' => 'mdo', 'MD12G1003900' => 'mdo', 'MD14G1002700' => 'mdo', 'MD15G1297000' => 'mdo', 'MD15G1430000' => 'mdo', 'Medtr4g097010' => 'mtr', 'Medtr5g015530' => 'mtr', 'Medtr7g085650' => 'mtr', 'MELO3C000465.2' => 'cme', 'MELO3C007632.2' => 'cme', 'MELO3C008444.2' => 'cme', 'MELO3C012940.2' => 'cme', 'MELO3C017519.2' => 'cme', 'MELO3C018012.2' => 'cme', 'MELO3C026885.2' => 'cme', 'MELO3C027505.2' => 'cme', 'MELO3C031763.2' => 'cme', 'Migut.K00007' => 'egut', 'Migut.L00216' => 'egut', 'MSTRG.10860' => 'ama', 'MSTRG.15352' => 'ama', 'Nitab4.5_0000036g0050' => 'nta', 'Nitab4.5_0000142g0020' => 'nta', 'Nitab4.5_0000394g0020' => 'nta', 'Nitab4.5_0000626g0070' => 'nta', 'Nitab4.5_0001079g0180' => 'nta', 'Nitab4.5_0002119g0120' => 'nta', 'Nitab4.5_0009367g0010' => 'nta', 'Nitab4.5_0010836g0020' => 'nta', 'Nn1g04558' => 'nnu', 'Nn2g15865' => 'nnu', 'Nn5g30583' => 'nnu', 'Nn7g35854' => 'nnu', 'Oeu013319.1' => 'oeu', 'Oeu014245.1' => 'oeu', 'Oeu014246.1' => 'oeu', 'Oeu017645.2' => 'oeu', 'Oeu048433.1' => 'oeu', 'Oeu054195.1' => 'oeu', 'Os03g0202001' => 'osa', 'Os07g0573100' => 'osa', 'Os11g0634800' => 'osa', 'Peaxi162Scf00249g00719' => 'pax', 'Peaxi162Scf00449g00313' => 'pax', 'Peaxi162Scf00463g00014' => 'pax', 'Peaxi162Scf00548g00648' => 'pax', 'PGR042G0262' => 'pgr', 'PGR102G2084' => 'pgr', 'PGSC0003DMG400003318' => 'stu', 'PGSC0003DMG400021446' => 'stu', 'PGSC0003DMG400023663' => 'stu', 'Phvul.001G111000' => 'pvu', 'Phvul.002G010900' => 'pvu', 'Phvul.003G235300' => 'pvu', 'Potri.001G293400' => 'ptr', 'Potri.009G088100' => 'ptr', 'Potri.013G057900' => 'ptr', 'Pp3c10_2670' => 'ppa', 'Pp3c23_21010' => 'ppa', 'Pp3c24_11970' => 'ppa', 'Pp3c2_19640' => 'ppa', 'PRCOL_00000153' => 'pco', 'Prupe.6G221200' => 'ppe', 'Prupe.7G004400' => 'ppe', 'Prupe.8G145000' => 'ppe', 'Psat0s1971g0360' => 'psa', 'Psat2g171480' => 'psa', 'Psat4g082000' => 'psa', 'PSO017G6474' => 'pso', 'PSO170G0740' => 'pso', 'PSO339G3322' => 'pso', 'PSO384G5135' => 'pso', 'QL07p018306' => 'qlo', 'QL11p030465' => 'qlo', 'RcHm_v2.0_Chr2g0107981' => 'rch', 'RcHm_v2.0_Chr3g0497061' => 'rch', 'RcHm_v2.0_Chr6g0253831' => 'rch', 'Rhsim08G0093700' => 'rsi', 'Sabra13G0051500' => 'sbr', 'Sabra16G0183300' => 'sbr', 'SalBow5G3056' => 'sbo', 'SalBow5G3476' => 'sbo', 'SalBow6G6032' => 'sbo', 'Sc16g0002900' => 'sci', 'Sc19g0006440' => 'sci', 'Sed0003357' => 'sed', 'Sed0009291' => 'sed', 'Sed0015268' => 'sed', 'Sed0015770' => 'sed', 'Sed0021142' => 'sed', 'SEGI_40361' => 'sgi', 'SGA_v2.0_scaffold13G06406' => 'sas', 'SGA_v2.0_scaffold90G27719' => 'sas', 'SGA_v2.0_scaffold94G28402' => 'sas', 'SMO119G0379' => 'smo', 'SMO337G0036' => 'smo', 'SMO367G0161' => 'smo', 'Solyc02g064650.3' => 'sly', 'Solyc02g092410.3' => 'sly', 'Solyc10g080680.3' => 'sly', 'Sopen02g014750' => 'spe', 'Sopen02g036960' => 'spe', 'Sopen10g031220' => 'spe', 'Sp2g29130' => 'spa', 'Sp3g02870' => 'spa', 'Sp3g27920' => 'spa', 'Sp7g35950' => 'spa', 'TAR623G1634' => 'tar', 'TAR628G0218' => 'tar', 'THA.LOC104807216' => 'tha', 'THA.LOC104819529' => 'tha', 'THA.LOC104820774' => 'tha', 'THA.LOC104821201' => 'tha', 'THA.LOC104824878' => 'tha', 'Thecc.01G072300' => 'tca', 'Thecc.02G211000' => 'tca', 'Thecc.05G294900' => 'tca', 'Thecc.05G295200' => 'tca', 'Thecc.05G296100' => 'tca', 'Thecc.05G296400' => 'tca', 'Thhalv10004693m.g' => 'esa', 'Thhalv10021488m.g' => 'esa', 'Thhalv10022805m.g' => 'esa', 'Thhalv10025861m.g' => 'esa', 'TPR.G24229' => 'tpr', 'TPR.G34854' => 'tpr', 'TPR.G5859' => 'tpr', 'TWI09G0994' => 'twi', 'TWI14G0342' => 'twi', 'TWI59G1184' => 'twi', 'TWI73G1078' => 'twi', 'unitig_736.g22478' => 'ugi', 'vmacro12566' => 'vma', 'vmacro18026' => 'vma', 'VMungo0251G2360' => 'vmu', 'VMungo1215G2007' => 'vmu', 'VMungo1383G3601' => 'vmu', 'Zm00001eb107420' => 'zma', 'Zm00001eb166390' => 'zma', 'Zm00001eb325100' => 'zma', 'Zm00001eb400760' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001721', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001721' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001721', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '376', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001721' ) ), 'genes' => array( 'A01p00820' => 'bna', 'A03p45270' => 'bna', 'A03p65790' => 'bna', 'A05p43480' => 'bna', 'A06p32900' => 'bna', 'A08p23190' => 'bna', 'A09p10490' => 'bna', 'Aa31LG1G16070' => 'aar', 'Aa31LG5G14480' => 'aar', 'Aa31LG6G15330' => 'aar', 'Aa31LG8G12790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.257__258' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.373' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2818' => 'aag', 'Actinidia16428' => 'ach', 'Actinidia22082' => 'ach', 'Actinidia30552' => 'ach', 'Actinidia32840' => 'ach', 'Ah.03g140540' => 'amhyb', 'AL3G13790' => 'aly', 'AL3G46480' => 'aly', 'AL7G12190' => 'aly', 'AL8G43780' => 'aly', 'Aqoxy1G00483' => 'aox', 'Aqoxy5G00872' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W779N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8PRW0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFDA09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U78PA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XY76Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0PJVS' => 'arhy', 'AT2G14750' => 'ath', 'AT3G03900' => 'ath', 'AT4G39940' => 'ath', 'AT5G67520' => 'ath', 'ATR1153G097' => 'atr', 'Atru.chr2.1388' => 'acertr', 'Atru.chr3.1006' => 'acertr', 'AUR62004006' => 'cqu', 'AUR62032052' => 'cqu', 'AUR62032695' => 'cqu', 'AUR62040241' => 'cqu', 'BcaB02g09916' => 'bca', 'BcaB02g11537' => 'bca', 'BcaB03g12295' => 'bca', 'BcaB04g20047' => 'bca', 'BcaB08g34569' => 'bca', 'BcaC01g00331' => 'bca', 'BcaC01g03090' => 'bca', 'BcaC04g23069' => 'bca', 'BcaC04g23233' => 'bca', 'BcaC05g29893' => 'bca', 'BcaC05g30243' => 'bca', 'BcaC05g30292' => 'bca', 'BcaNung00915' => 'bca', 'BcaNung03406' => 'bca', 'BcaNung06389' => 'bca', 'BolC1t00093H' => 'bol', 'BolC3t17899H' => 'bol', 'BolC3t18221H' => 'bol', 'BolC3t20107H' => 'bol', 'BolC5t34967H' => 'bol', 'BolC7t46691H' => 'bol', 'BolC9t53980H' => 'bol', 'BolC9t54139H' => 'bol', 'BraA01t00084Z' => 'bra', 'BraA03t13660Z' => 'bra', 'BraA03t15632Z' => 'bra', 'BraA05t23087Z' => 'bra', 'BraA06t26221Z' => 'bra', 'BraA08t34277Z' => 'bra', 'BraA09t36694Z' => 'bra', 'C01p00930' => 'bna', 'C03p56120' => 'bna', 'C03p59570' => 'bna', 'C03p78550' => 'bna', 'C07p62770' => 'bna', 'C09p10870' => 'bna', 'C09p12460' => 'bna', 'CAN.G1075.33' => 'can', 'CAN.G128.62' => 'can', 'CAN.G775.9' => 'can', 'CANSAT01G2425' => 'cansat', 'CANSAT25G2073' => 'cansat', 'CARHR078020' => 'chi', 'CARHR246760' => 'chi', 'CARHR280070' => 'chi', 'CARHR286460' => 'chi', 'Carub.0003s0314' => 'cru', 'Carub.0003s2878' => 'cru', 'Carub.0007s0188' => 'cru', 'Carub.0008s2695' => 'cru', 'Ca_08268_v3' => 'car', 'Ca_22108_v3' => 'car', 'Ca_22115_v3' => 'car', 'Ca_24695_v3' => 'car', 'CBR_g28654' => 'cbr', 'Cc06_g23010' => 'ccan', 'Cc07_g07070' => 'ccan', 'CDE06G1587' => 'cde', 'Cfa004128' => 'cfa', 'Cfa004663' => 'cfa', 'Cfa016445' => 'cfa', 'Cfa026598' => 'cfa', 'Ciclev10022273m.g' => 'ccl', 'Ciclev10026239m.g' => 'ccl', 'CiPaw.01G004800' => 'cil', 'CiPaw.05G018100' => 'cil', 'CiPaw.09G002100' => 'cil', 'ClCG01G017560' => 'cla', 'ClCG10G010250' => 'cla', 'ClCG10G013390' => 'cla', 'COL.COLO4_11572' => 'col', 'COL.COLO4_11573' => 'col', 'COL.COLO4_13593' => 'col', 'Cpa.g.sc106.46' => 'cpa', 'Cpa.g.sc51.118' => 'cpa', 'Cpa.g.sc6.21' => 'cpa', 'Cpa.g.sc752.4' => 'cpa', 'Cre16.g677500' => 'cre', 'CsaV3_3G043250' => 'csa', 'CsaV3_4G000200' => 'csa', 'CsaV3_6G044100' => 'csa', 'CSS0004311' => 'camsi', 'CSS0010676' => 'camsi', 'CSS0015234' => 'camsi', 'DCAR_010821' => 'dca', 'DCAR_013686' => 'dca', 'Dinv04051' => 'din', 'Dinv26927' => 'din', 'Dinv37017' => 'din', 'Duzib106G1802' => 'dzi', 'Duzib128G1240' => 'dzi', 'Duzib147G1052' => 'dzi', 'Duzib177G0513' => 'dzi', 'Duzib177G0855' => 'dzi', 'Duzib187G0930' => 'dzi', 'ECA233G4150' => 'eca', 'ECA238G2391' => 'eca', 'ECA246G1468' => 'eca', 'EL10Ac3g06822' => 'bvu', 'EL10Ac6g15622' => 'bvu', 'Eucgr.A02099' => 'egr', 'Eucgr.H02306' => 'egr', 'FAN15G0974' => 'fan', 'FAN19G2035' => 'fan', 'FAN20G0294' => 'fan', 'FAN23G0291' => 'fan', 'FAN23G2641' => 'fan', 'FAN24G1279' => 'fan', 'FAN26G1723' => 'fan', 'FAN26G2890' => 'fan', 'FAN27G1384' => 'fan', 'FAN28G0637' => 'fan', 'FAN28G1685' => 'fan', 'FvH4_1g17660' => 'fve', 'FvH4_1g28150' => 'fve', 'FvH4_2g04460' => 'fve', 'Glyma.01G193950' => 'gma', 'Glyma.01G194000' => 'gma', 'Glyma.05G105300' => 'gma', 'Glyma.11G047900' => 'gma', 'Glyma.16G040900' => 'gma', 'Glyma.17G161100' => 'gma', 'Glyma.19G112200' => 'gma', 'Gohir.A02G151800' => 'ghi', 'Gohir.A11G215150' => 'ghi', 'Gohir.A11G296300' => 'ghi', 'Gohir.A12G077100' => 'ghi', 'Gohir.A13G172100' => 'ghi', 'Gohir.D03G028600' => 'ghi', 'Gohir.D11G208200' => 'ghi', 'Gohir.D11G310600' => 'ghi', 'Gohir.D12G075300' => 'ghi', 'Gohir.D13G178000' => 'ghi', 'Gorai.003G030100' => 'gra', 'Gorai.007G223200' => 'gra', 'Gorai.007G343200' => 'gra', 'Gorai.008G083800' => 'gra', 'Gorai.013G203300' => 'gra', 'GSVIVG01000111001' => 'vvi', 'GSVIVG01000120001' => 'vvi', 'GSVIVG01033406001' => 'vvi', 'GSVIVG01037835001' => 'vvi', 'HanXRQChr05g0130381' => 'han', 'HanXRQChr11g0350871' => 'han', 'HanXRQChr12g0376331' => 'han', 'HanXRQChr13g0397701' => 'han', 'HanXRQChr15g0472651' => 'han', 'Haze_10260' => 'cav', 'Haze_15286' => 'cav', 'Haze_19422' => 'cav', 'Hma1.2p1_0152F.1_g067710' => 'hma', 'Hma1.2p1_0479F.1_g161620' => 'hma', 'Hma1.2p1_0808F.1_g221610' => 'hma', 'Hma1.2p1_0852F.1_g228460' => 'hma', 'Hma1.2p1_3081F.1_g332450' => 'hma', 'Hma1.2p1_3538F.1_g336660' => 'hma', 'HPP92_009489' => 'vpl', 'HPP92_009543' => 'vpl', 'HPP92_014232' => 'vpl', 'HPP92_026493' => 'vpl', 'Hund13951' => 'sun', 'Hund16398' => 'sun', 'Hund24833' => 'sun', 'Lalb_Chr05g0225881' => 'lal', 'Lalb_Chr09g0323591' => 'lal', 'Lalb_Chr14g0364501' => 'lal', 'Lalb_Chr14g0364511' => 'lal', 'Lalb_Chr16g0376291' => 'lal', 'Lj1g0020420' => 'lja', 'Lj1g0027563' => 'lja', 'Lj2g0015524' => 'lja', 'Lj4A163T71' => 'lonja', 'Lj4g0021358' => 'lja', 'Lj8C584G0' => 'lonja', 'Lsat_1_v5_gn_2_83321' => 'lsa', 'Lsat_1_v5_gn_3_86160' => 'lsa', 'Lsat_1_v5_gn_6_37300' => 'lsa', 'Lsat_1_v5_gn_7_74021' => 'lsa', 'Lsat_1_v5_gn_8_27761' => 'lsa', 'Manes.08G144500' => 'mes', 'Manes.09G141100' => 'mes', 'Manes.10G083700' => 'mes', 'Manes.12G113800' => 'mes', 'Manes.13G111900' => 'mes', 'Mapoly0001s0168' => 'mpo', 'Mapoly0151s0024' => 'mpo', 'MBI01_g13085_MAGBIO' => 'mbi', 'MBI16_g07982_MAGBIO' => 'mbi', 'MCO01G791' => 'mco', 'MD02G1185400' => 'mdo', 'MD05G1100600' => 'mdo', 'MD10G1105800' => 'mdo', 'MD11G1100500' => 'mdo', 'MD12G1003900' => 'mdo', 'MD14G1002700' => 'mdo', 'MD15G1297000' => 'mdo', 'MD15G1430000' => 'mdo', 'Medtr4g097010' => 'mtr', 'Medtr5g015530' => 'mtr', 'Medtr7g085650' => 'mtr', 'MELO3C000465.2' => 'cme', 'MELO3C007632.2' => 'cme', 'MELO3C008444.2' => 'cme', 'MELO3C012940.2' => 'cme', 'MELO3C017519.2' => 'cme', 'MELO3C018012.2' => 'cme', 'MELO3C026885.2' => 'cme', 'MELO3C027505.2' => 'cme', 'MELO3C031763.2' => 'cme', 'Migut.K00007' => 'egut', 'Migut.L00216' => 'egut', 'MSTRG.10860' => 'ama', 'MSTRG.15352' => 'ama', 'Nitab4.5_0000036g0050' => 'nta', 'Nitab4.5_0000142g0020' => 'nta', 'Nitab4.5_0000394g0020' => 'nta', 'Nitab4.5_0000626g0070' => 'nta', 'Nitab4.5_0001079g0180' => 'nta', 'Nitab4.5_0002119g0120' => 'nta', 'Nitab4.5_0009367g0010' => 'nta', 'Nitab4.5_0010836g0020' => 'nta', 'Nn1g04558' => 'nnu', 'Nn2g15865' => 'nnu', 'Nn5g30583' => 'nnu', 'Nn7g35854' => 'nnu', 'Oeu013319.1' => 'oeu', 'Oeu014245.1' => 'oeu', 'Oeu014246.1' => 'oeu', 'Oeu017645.2' => 'oeu', 'Oeu048433.1' => 'oeu', 'Oeu054195.1' => 'oeu', 'Os03g0202001' => 'osa', 'Os07g0573100' => 'osa', 'Os11g0634800' => 'osa', 'Peaxi162Scf00249g00719' => 'pax', 'Peaxi162Scf00449g00313' => 'pax', 'Peaxi162Scf00463g00014' => 'pax', 'Peaxi162Scf00548g00648' => 'pax', 'PGR042G0262' => 'pgr', 'PGR102G2084' => 'pgr', 'PGSC0003DMG400003318' => 'stu', 'PGSC0003DMG400021446' => 'stu', 'PGSC0003DMG400023663' => 'stu', 'Phvul.001G111000' => 'pvu', 'Phvul.002G010900' => 'pvu', 'Phvul.003G235300' => 'pvu', 'Potri.001G293400' => 'ptr', 'Potri.009G088100' => 'ptr', 'Potri.013G057900' => 'ptr', 'Pp3c10_2670' => 'ppa', 'Pp3c23_21010' => 'ppa', 'Pp3c24_11970' => 'ppa', 'Pp3c2_19640' => 'ppa', 'PRCOL_00000153' => 'pco', 'Prupe.6G221200' => 'ppe', 'Prupe.7G004400' => 'ppe', 'Prupe.8G145000' => 'ppe', 'Psat0s1971g0360' => 'psa', 'Psat2g171480' => 'psa', 'Psat4g082000' => 'psa', 'PSO017G6474' => 'pso', 'PSO170G0740' => 'pso', 'PSO339G3322' => 'pso', 'PSO384G5135' => 'pso', 'QL07p018306' => 'qlo', 'QL11p030465' => 'qlo', 'RcHm_v2.0_Chr2g0107981' => 'rch', 'RcHm_v2.0_Chr3g0497061' => 'rch', 'RcHm_v2.0_Chr6g0253831' => 'rch', 'Rhsim08G0093700' => 'rsi', 'Sabra13G0051500' => 'sbr', 'Sabra16G0183300' => 'sbr', 'SalBow5G3056' => 'sbo', 'SalBow5G3476' => 'sbo', 'SalBow6G6032' => 'sbo', 'Sc16g0002900' => 'sci', 'Sc19g0006440' => 'sci', 'Sed0003357' => 'sed', 'Sed0009291' => 'sed', 'Sed0015268' => 'sed', 'Sed0015770' => 'sed', 'Sed0021142' => 'sed', 'SEGI_40361' => 'sgi', 'SGA_v2.0_scaffold13G06406' => 'sas', 'SGA_v2.0_scaffold90G27719' => 'sas', 'SGA_v2.0_scaffold94G28402' => 'sas', 'SMO119G0379' => 'smo', 'SMO337G0036' => 'smo', 'SMO367G0161' => 'smo', 'Solyc02g064650.3' => 'sly', 'Solyc02g092410.3' => 'sly', 'Solyc10g080680.3' => 'sly', 'Sopen02g014750' => 'spe', 'Sopen02g036960' => 'spe', 'Sopen10g031220' => 'spe', 'Sp2g29130' => 'spa', 'Sp3g02870' => 'spa', 'Sp3g27920' => 'spa', 'Sp7g35950' => 'spa', 'TAR623G1634' => 'tar', 'TAR628G0218' => 'tar', 'THA.LOC104807216' => 'tha', 'THA.LOC104819529' => 'tha', 'THA.LOC104820774' => 'tha', 'THA.LOC104821201' => 'tha', 'THA.LOC104824878' => 'tha', 'Thecc.01G072300' => 'tca', 'Thecc.02G211000' => 'tca', 'Thecc.05G294900' => 'tca', 'Thecc.05G295200' => 'tca', 'Thecc.05G296100' => 'tca', 'Thecc.05G296400' => 'tca', 'Thhalv10004693m.g' => 'esa', 'Thhalv10021488m.g' => 'esa', 'Thhalv10022805m.g' => 'esa', 'Thhalv10025861m.g' => 'esa', 'TPR.G24229' => 'tpr', 'TPR.G34854' => 'tpr', 'TPR.G5859' => 'tpr', 'TWI09G0994' => 'twi', 'TWI14G0342' => 'twi', 'TWI59G1184' => 'twi', 'TWI73G1078' => 'twi', 'unitig_736.g22478' => 'ugi', 'vmacro12566' => 'vma', 'vmacro18026' => 'vma', 'VMungo0251G2360' => 'vmu', 'VMungo1215G2007' => 'vmu', 'VMungo1383G3601' => 'vmu', 'Zm00001eb107420' => 'zma', 'Zm00001eb166390' => 'zma', 'Zm00001eb325100' => 'zma', 'Zm00001eb400760' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001721' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001721' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001721' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001721' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151