Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001699', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '381', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p36820' => 'bna', 'A05p38250' => 'bna', 'Aa31LG11G6430' => 'aar', 'Aa31LG1G23360' => 'aar', 'Aa31LG3G4140' => 'aar', 'Aa31LG3G4150' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1990' => 'aag', 'Actinidia00982' => 'ach', 'Actinidia11540' => 'ach', 'Actinidia29058' => 'ach', 'Actinidia29737' => 'ach', 'Ah.08g209900' => 'amhyb', 'AL3G22540' => 'aly', 'AL6G10310' => 'aly', 'Aqoxy3G01090' => 'aox', 'Aqoxy4G02177' => 'aox', 'Aqoxy4G02178' => 'aox', 'arahy.Tifrunner.gnm1.ann1.83Q2IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR5SC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHCF7T' => 'arhy', 'AT3G10985' => 'ath', 'AT5G01740' => 'ath', 'ATR0594G157' => 'atr', 'ATR0594G214' => 'atr', 'Atru.chr1.2578' => 'acertr', 'Atru.chr12.128' => 'acertr', 'Atru.chr8.2356' => 'acertr', 'AUR62012326' => 'cqu', 'AUR62022968' => 'cqu', 'BcaB04g18615' => 'bca', 'BcaB04g21161' => 'bca', 'BcaB05g21915' => 'bca', 'BcaB06g25668' => 'bca', 'BcaC01g04150' => 'bca', 'BcaC03g13087' => 'bca', 'BcaC05g29420' => 'bca', 'BcaC09g48144' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00130' => 'bna', 'BolC1t05341H' => 'bol', 'BolC2t06007H' => 'bol', 'BolC3t16722H' => 'bol', 'BolC5t34370H' => 'bol', 'BraA01t04210Z' => 'bra', 'BraA02t04680Z' => 'bra', 'BraA03t12845Z' => 'bra', 'BraA05t22618Z' => 'bra', 'C02p00100' => 'bna', 'C03p44550' => 'bna', 'C05p57070' => 'bna', 'CAN.G1302.5' => 'can', 'CAN.G169.8' => 'can', 'CAN.G510.2' => 'can', 'CANSAT35G1462' => 'cansat', 'CANSAT54G2558' => 'cansat', 'CANSAT56G0407' => 'cansat', 'CARHR085570' => 'chi', 'CARHR212100' => 'chi', 'Carub.0003s1027' => 'cru', 'Carub.0006s0009' => 'cru', 'Ca_05679_v3' => 'car', 'Ca_15016_v3' => 'car', 'Ca_15175_v3' => 'car', 'Ca_26098_v3' => 'car', 'Cc01_g14980' => 'ccan', 'Cc02_g05790' => 'ccan', 'Cc06_g00660' => 'ccan', 'CDE04G0996' => 'cde', 'CDE04G1332' => 'cde', 'CDE05G1552' => 'cde', 'CDE11G0706' => 'cde', 'Cfa011790' => 'cfa', 'Cfa017092' => 'cfa', 'Ciclev10012959m.g' => 'ccl', 'Ciclev10027637m.g' => 'ccl', 'Ciclev10033519m.g' => 'ccl', 'CiPaw.01G303300' => 'cil', 'CiPaw.02G197000' => 'cil', 'CiPaw.09G216700' => 'cil', 'CiPaw.10G161900' => 'cil', 'CiPaw.13G067800' => 'cil', 'CiPaw.13G067900' => 'cil', 'CiPaw.14G029400' => 'cil', 'ClCG03G000150' => 'cla', 'ClCG04G006570' => 'cla', 'ClCG11G005910' => 'cla', 'COL.COLO4_11170' => 'col', 'COL.COLO4_14431' => 'col', 'COL.COLO4_25819' => 'col', 'Cpa.g.sc19.105' => 'cpa', 'Cpa.g.sc2.339' => 'cpa', 'Cpa.g.sc33.104' => 'cpa', 'CsaV3_4G026930' => 'csa', 'CsaV3_6G002080' => 'csa', 'CSS0007613' => 'camsi', 'CSS0007791' => 'camsi', 'CSS0024332' => 'camsi', 'CSS0025635' => 'camsi', 'CSS0026721' => 'camsi', 'CSS0028087' => 'camsi', 'CSS0042067' => 'camsi', 'CSS0044168' => 'camsi', 'DCAR_015353' => 'dca', 'DCAR_018659' => 'dca', 'DCAR_024797' => 'dca', 'DCAR_028555' => 'dca', 'DCAR_030452' => 'dca', 'Dinv21805' => 'din', 'Dinv25288' => 'din', 'Dinv28704' => 'din', 'Dinv35427' => 'din', 'Dinv35428' => 'din', 'Duzib093G1144' => 'dzi', 'Duzib106G1689' => 'dzi', 'Duzib114G0340' => 'dzi', 'Duzib128G1932' => 'dzi', 'ECA238G2138' => 'eca', 'ECA247G0193' => 'eca', 'ECA247G2675' => 'eca', 'ECA248G0408' => 'eca', 'ECA248G0694' => 'eca', 'ECA248G2509' => 'eca', 'EL10Ac2g04303' => 'bvu', 'EL10Ac4g08234' => 'bvu', 'EL10Ac7g17024' => 'bvu', 'EL10Ac9g22503' => 'bvu', 'Eucgr.A00638' => 'egr', 'Eucgr.A00639' => 'egr', 'Eucgr.A00640' => 'egr', 'Eucgr.G03106' => 'egr', 'Eucgr.J00155' => 'egr', 'Eucgr.J01851' => 'egr', 'Eucgr.J01852' => 'egr', 'FAN01G0843' => 'fan', 'FAN02G1050' => 'fan', 'FAN03G1062' => 'fan', 'FAN05G1242' => 'fan', 'FAN05G4591' => 'fan', 'FAN06G4728' => 'fan', 'FAN09G4204' => 'fan', 'FAN10G1602' => 'fan', 'FAN11G0040' => 'fan', 'FAN11G1527' => 'fan', 'FAN14G0220' => 'fan', 'FAN14G3954' => 'fan', 'FAN16G1854' => 'fan', 'FAN16G2129' => 'fan', 'FAN21G1263' => 'fan', 'FAN21G3197' => 'fan', 'FAN25G0308' => 'fan', 'FvH4_3g39910' => 'fve', 'FvH4_3g39920' => 'fve', 'FvH4_6g10320' => 'fve', 'Glyma.03G041300' => 'gma', 'Glyma.09G279600' => 'gma', 'Glyma.11G163100' => 'gma', 'Glyma.11G163200' => 'gma', 'Glyma.11G234300' => 'gma', 'Glyma.14G200500' => 'gma', 'Glyma.18G022700' => 'gma', 'Glyma.18G056400' => 'gma', 'Glyma.18G056500' => 'gma', 'Glyma.18G209500' => 'gma', 'Gohir.A01G230601' => 'ghi', 'Gohir.A06G159701' => 'ghi', 'Gohir.A10G240650' => 'ghi', 'Gohir.A10G240700' => 'ghi', 'Gohir.A13G013600' => 'ghi', 'Gohir.D01G220700' => 'ghi', 'Gohir.D06G165500' => 'ghi', 'Gohir.D10G252900' => 'ghi', 'Gohir.D13G014700' => 'ghi', 'Gorai.002G267300' => 'gra', 'Gorai.010G193000' => 'gra', 'Gorai.011G293200' => 'gra', 'Gorai.013G015900' => 'gra', 'GSVIVG01030243001' => 'vvi', 'HanXRQChr05g0132431' => 'han', 'HanXRQChr08g0222661' => 'han', 'HanXRQChr10g0287951' => 'han', 'HanXRQChr10g0287961' => 'han', 'HanXRQChr14g0458811' => 'han', 'Haze_17311' => 'cav', 'Haze_17317' => 'cav', 'Haze_21107' => 'cav', 'Haze_24427' => 'cav', 'Haze_24428' => 'cav', 'Hma1.2p1_0292F.1_g115680' => 'hma', 'Hma1.2p1_1421F.1_g282420' => 'hma', 'Hma1.2p1_1857F.1_g305480' => 'hma', 'Hma1.2p1_2229F.1_g317550' => 'hma', 'Hma1.2p1_2300F.1_g319260' => 'hma', 'Hma1.2p1_3169F.1_g333565' => 'hma', 'HPP92_012008' => 'vpl', 'HPP92_013850' => 'vpl', 'HPP92_013864' => 'vpl', 'HPP92_025115' => 'vpl', 'HPP92_025116' => 'vpl', 'Lalb_Chr01g0023501' => 'lal', 'Lalb_Chr08g0231371' => 'lal', 'Lalb_Chr11g0075151' => 'lal', 'Lalb_Chr20g0114651' => 'lal', 'Lalb_Chr23g0277161' => 'lal', 'Lj1g0020010' => 'lja', 'Lj1P963T38' => 'lonja', 'Lj2C64T17' => 'lonja', 'Lj2P1095T22' => 'lonja', 'Lj3P944T16' => 'lonja', 'Lj6g0018395' => 'lja', 'LjContig00141g0015376' => 'lja', 'Lsat_1_v5_gn_2_125861' => 'lsa', 'Lsat_1_v5_gn_5_173800' => 'lsa', 'Lsat_1_v5_gn_5_173820' => 'lsa', 'Lsat_1_v5_gn_8_13361' => 'lsa', 'Lsat_1_v5_gn_9_38300' => 'lsa', 'Manes.07G136900' => 'mes', 'Manes.09G113800' => 'mes', 'Manes.10G006800' => 'mes', 'Manes.16G094700' => 'mes', 'Mapoly0023s0147' => 'mpo', 'Mapoly0071s0035' => 'mpo', 'MBI15_g00253_MAGBIO' => 'mbi', 'MBI15_g34612_MAGBIO' => 'mbi', 'MBI15_g41192_MAGBIO' => 'mbi', 'MD01G1160900' => 'mdo', 'MD03G1057800' => 'mdo', 'MD04G1079700' => 'mdo', 'MD04G1168600' => 'mdo', 'MD07G1228900' => 'mdo', 'MD11G1060200' => 'mdo', 'MD12G1182200' => 'mdo', 'Medtr3g031270' => 'mtr', 'Medtr3g072030' => 'mtr', 'Medtr5g074500' => 'mtr', 'Medtr7g071760' => 'mtr', 'Medtr7g071790' => 'mtr', 'Medtr7g071820' => 'mtr', 'Medtr7g071840' => 'mtr', 'Medtr7g071970' => 'mtr', 'MELO3C019983.2' => 'cme', 'MELO3C020492.2' => 'cme', 'MELO3C026039.2' => 'cme', 'Migut.F00613' => 'egut', 'Migut.J00082' => 'egut', 'MSTRG.185' => 'ama', 'MSTRG.27291' => 'ama', 'MSTRG.8360' => 'ama', 'MSTRG.8910' => 'ama', 'Nitab4.5_0000047g0080' => 'nta', 'Nitab4.5_0000263g0030' => 'nta', 'Nitab4.5_0004961g0010' => 'nta', 'Nitab4.5_0009875g0010' => 'nta', 'Nn2g11048' => 'nnu', 'Nn2g13295' => 'nnu', 'Nn2g14169' => 'nnu', 'Oeu017754.1' => 'oeu', 'Oeu034523.1' => 'oeu', 'Oeu038713.1' => 'oeu', 'Os03g0299600' => 'osa', 'Os05g0342000' => 'osa', 'Os05g0342100' => 'osa', 'Os07g0691300' => 'osa', 'Peaxi162Scf00284g00016' => 'pax', 'Peaxi162Scf00304g00214' => 'pax', 'Peaxi162Scf00744g10017' => 'pax', 'PGR031G3984' => 'pgr', 'PGR044G1046' => 'pgr', 'PGR142G0934' => 'pgr', 'PGR142G3506' => 'pgr', 'PGSC0003DMG400006643' => 'stu', 'PGSC0003DMG400017895' => 'stu', 'PGSC0003DMG400026616' => 'stu', 'Phvul.001G247700' => 'pvu', 'Phvul.006G074700' => 'pvu', 'Phvul.008G251001' => 'pvu', 'Phvul.010G061500' => 'pvu', 'Potri.008G075200' => 'ptr', 'Potri.010G182200' => 'ptr', 'Potri.013G153801' => 'ptr', 'Potri.016G129500' => 'ptr', 'Potri.016G129600' => 'ptr', 'Potri.019G125900' => 'ptr', 'Pp3c11_3310' => 'ppa', 'Pp3c12_4310' => 'ppa', 'Pp3c13_21870' => 'ppa', 'Pp3c5_18730' => 'ppa', 'Prupe.2G258900' => 'ppe', 'Prupe.6G046200' => 'ppe', 'Prupe.6G046300' => 'ppe', 'Prupe.6G286900' => 'ppe', 'Psat0s1426g0080' => 'psa', 'Psat0s2636g0040' => 'psa', 'Psat5g152440' => 'psa', 'PSO017G1807' => 'pso', 'PSO135G0469' => 'pso', 'PSO170G1388' => 'pso', 'PSO170G6531' => 'pso', 'PSO339G0613' => 'pso', 'PSO384G2774' => 'pso', 'PSO724G0508' => 'pso', 'QL01p025777' => 'qlo', 'QL01p025785' => 'qlo', 'QL07p033556' => 'qlo', 'QL08p064204' => 'qlo', 'RcHm_v2.0_Chr3g0461091' => 'rch', 'RcHm_v2.0_Chr5g0071881' => 'rch', 'RcHm_v2.0_Chr5g0071891' => 'rch', 'Rhsim03G0149200' => 'rsi', 'Rhsim05G0227200' => 'rsi', 'Rhsim09G0182000' => 'rsi', 'Rhsim13G0062800' => 'rsi', 'Rhsim13G0062900' => 'rsi', 'Sabra08G0055700' => 'sbr', 'Sabra10G0139500' => 'sbr', 'Sabra16G0129100' => 'sbr', 'Sabra19G0123900' => 'sbr', 'Sabra19G0130700' => 'sbr', 'SalBow4G1534' => 'sbo', 'Sc02g0000660' => 'sci', 'Sc11g0005560' => 'sci', 'Sc14g0005570' => 'sci', 'Sed0006255' => 'sed', 'Sed0008318' => 'sed', 'Sed0012456' => 'sed', 'Sed0015931' => 'sed', 'SEGI_03244' => 'sgi', 'SEGI_08396' => 'sgi', 'SEGI_17931' => 'sgi', 'SEGI_21280' => 'sgi', 'SEGI_37092' => 'sgi', 'SEGI_38918' => 'sgi', 'SGA_v2.0_scaffold60G20941' => 'sas', 'SGA_v2.0_scaffold75G25040' => 'sas', 'SMO134G0085' => 'smo', 'SMO367G0022' => 'smo', 'Solyc06g048820.1' => 'sly', 'Solyc06g050760.1' => 'sly', 'Solyc09g014940.3' => 'sly', 'Sopen06g015110' => 'spe', 'Sopen06g016330' => 'spe', 'Sopen09g007900' => 'spe', 'Sp3g09320' => 'spa', 'Sp6g41000' => 'spa', 'TAR623G0164' => 'tar', 'TAR623G1633' => 'tar', 'THA.LOC104816523' => 'tha', 'THA.LOC104826836' => 'tha', 'Thecc.05G004200' => 'tca', 'Thecc.09G359300' => 'tca', 'Thecc.10G008000' => 'tca', 'Thhalv10014882m.g' => 'esa', 'Thhalv10022397m.g' => 'esa', 'TPR.G18665' => 'tpr', 'TPR.G22360' => 'tpr', 'TPR.G25343' => 'tpr', 'TPR.G25680' => 'tpr', 'TPR.G25708' => 'tpr', 'TPR.G28645' => 'tpr', 'TWI09G1182' => 'twi', 'TWI53G1305' => 'twi', 'TWI73G0091' => 'twi', 'TWI74G0143' => 'twi', 'TWI74G0396' => 'twi', 'TWI77G0026' => 'twi', 'TWI77G1013' => 'twi', 'unitig_0.g2178' => 'ugi', 'unitig_0.g254' => 'ugi', 'unitig_62.g23926' => 'ugi', 'unitig_699.g19376' => 'ugi', 'vmacro02907' => 'vma', 'vmacro02908' => 'vma', 'vmacro09988' => 'vma', 'vmacro09989' => 'vma', 'VMungo0331G0593' => 'vmu', 'VMungo0540G2383' => 'vmu', 'VMungo0647G0306' => 'vmu', 'VMungo1383G2639' => 'vmu', 'VMungo1383G3264' => 'vmu', 'Zm00001eb013910' => 'zma', 'Zm00001eb286540' => 'zma', 'Zm00001eb331450' => 'zma', 'Zm00001eb396640' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001699', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001699' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001699', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '381', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001699' ) ), 'genes' => array( 'A03p36820' => 'bna', 'A05p38250' => 'bna', 'Aa31LG11G6430' => 'aar', 'Aa31LG1G23360' => 'aar', 'Aa31LG3G4140' => 'aar', 'Aa31LG3G4150' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1990' => 'aag', 'Actinidia00982' => 'ach', 'Actinidia11540' => 'ach', 'Actinidia29058' => 'ach', 'Actinidia29737' => 'ach', 'Ah.08g209900' => 'amhyb', 'AL3G22540' => 'aly', 'AL6G10310' => 'aly', 'Aqoxy3G01090' => 'aox', 'Aqoxy4G02177' => 'aox', 'Aqoxy4G02178' => 'aox', 'arahy.Tifrunner.gnm1.ann1.83Q2IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR5SC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHCF7T' => 'arhy', 'AT3G10985' => 'ath', 'AT5G01740' => 'ath', 'ATR0594G157' => 'atr', 'ATR0594G214' => 'atr', 'Atru.chr1.2578' => 'acertr', 'Atru.chr12.128' => 'acertr', 'Atru.chr8.2356' => 'acertr', 'AUR62012326' => 'cqu', 'AUR62022968' => 'cqu', 'BcaB04g18615' => 'bca', 'BcaB04g21161' => 'bca', 'BcaB05g21915' => 'bca', 'BcaB06g25668' => 'bca', 'BcaC01g04150' => 'bca', 'BcaC03g13087' => 'bca', 'BcaC05g29420' => 'bca', 'BcaC09g48144' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00130' => 'bna', 'BolC1t05341H' => 'bol', 'BolC2t06007H' => 'bol', 'BolC3t16722H' => 'bol', 'BolC5t34370H' => 'bol', 'BraA01t04210Z' => 'bra', 'BraA02t04680Z' => 'bra', 'BraA03t12845Z' => 'bra', 'BraA05t22618Z' => 'bra', 'C02p00100' => 'bna', 'C03p44550' => 'bna', 'C05p57070' => 'bna', 'CAN.G1302.5' => 'can', 'CAN.G169.8' => 'can', 'CAN.G510.2' => 'can', 'CANSAT35G1462' => 'cansat', 'CANSAT54G2558' => 'cansat', 'CANSAT56G0407' => 'cansat', 'CARHR085570' => 'chi', 'CARHR212100' => 'chi', 'Carub.0003s1027' => 'cru', 'Carub.0006s0009' => 'cru', 'Ca_05679_v3' => 'car', 'Ca_15016_v3' => 'car', 'Ca_15175_v3' => 'car', 'Ca_26098_v3' => 'car', 'Cc01_g14980' => 'ccan', 'Cc02_g05790' => 'ccan', 'Cc06_g00660' => 'ccan', 'CDE04G0996' => 'cde', 'CDE04G1332' => 'cde', 'CDE05G1552' => 'cde', 'CDE11G0706' => 'cde', 'Cfa011790' => 'cfa', 'Cfa017092' => 'cfa', 'Ciclev10012959m.g' => 'ccl', 'Ciclev10027637m.g' => 'ccl', 'Ciclev10033519m.g' => 'ccl', 'CiPaw.01G303300' => 'cil', 'CiPaw.02G197000' => 'cil', 'CiPaw.09G216700' => 'cil', 'CiPaw.10G161900' => 'cil', 'CiPaw.13G067800' => 'cil', 'CiPaw.13G067900' => 'cil', 'CiPaw.14G029400' => 'cil', 'ClCG03G000150' => 'cla', 'ClCG04G006570' => 'cla', 'ClCG11G005910' => 'cla', 'COL.COLO4_11170' => 'col', 'COL.COLO4_14431' => 'col', 'COL.COLO4_25819' => 'col', 'Cpa.g.sc19.105' => 'cpa', 'Cpa.g.sc2.339' => 'cpa', 'Cpa.g.sc33.104' => 'cpa', 'CsaV3_4G026930' => 'csa', 'CsaV3_6G002080' => 'csa', 'CSS0007613' => 'camsi', 'CSS0007791' => 'camsi', 'CSS0024332' => 'camsi', 'CSS0025635' => 'camsi', 'CSS0026721' => 'camsi', 'CSS0028087' => 'camsi', 'CSS0042067' => 'camsi', 'CSS0044168' => 'camsi', 'DCAR_015353' => 'dca', 'DCAR_018659' => 'dca', 'DCAR_024797' => 'dca', 'DCAR_028555' => 'dca', 'DCAR_030452' => 'dca', 'Dinv21805' => 'din', 'Dinv25288' => 'din', 'Dinv28704' => 'din', 'Dinv35427' => 'din', 'Dinv35428' => 'din', 'Duzib093G1144' => 'dzi', 'Duzib106G1689' => 'dzi', 'Duzib114G0340' => 'dzi', 'Duzib128G1932' => 'dzi', 'ECA238G2138' => 'eca', 'ECA247G0193' => 'eca', 'ECA247G2675' => 'eca', 'ECA248G0408' => 'eca', 'ECA248G0694' => 'eca', 'ECA248G2509' => 'eca', 'EL10Ac2g04303' => 'bvu', 'EL10Ac4g08234' => 'bvu', 'EL10Ac7g17024' => 'bvu', 'EL10Ac9g22503' => 'bvu', 'Eucgr.A00638' => 'egr', 'Eucgr.A00639' => 'egr', 'Eucgr.A00640' => 'egr', 'Eucgr.G03106' => 'egr', 'Eucgr.J00155' => 'egr', 'Eucgr.J01851' => 'egr', 'Eucgr.J01852' => 'egr', 'FAN01G0843' => 'fan', 'FAN02G1050' => 'fan', 'FAN03G1062' => 'fan', 'FAN05G1242' => 'fan', 'FAN05G4591' => 'fan', 'FAN06G4728' => 'fan', 'FAN09G4204' => 'fan', 'FAN10G1602' => 'fan', 'FAN11G0040' => 'fan', 'FAN11G1527' => 'fan', 'FAN14G0220' => 'fan', 'FAN14G3954' => 'fan', 'FAN16G1854' => 'fan', 'FAN16G2129' => 'fan', 'FAN21G1263' => 'fan', 'FAN21G3197' => 'fan', 'FAN25G0308' => 'fan', 'FvH4_3g39910' => 'fve', 'FvH4_3g39920' => 'fve', 'FvH4_6g10320' => 'fve', 'Glyma.03G041300' => 'gma', 'Glyma.09G279600' => 'gma', 'Glyma.11G163100' => 'gma', 'Glyma.11G163200' => 'gma', 'Glyma.11G234300' => 'gma', 'Glyma.14G200500' => 'gma', 'Glyma.18G022700' => 'gma', 'Glyma.18G056400' => 'gma', 'Glyma.18G056500' => 'gma', 'Glyma.18G209500' => 'gma', 'Gohir.A01G230601' => 'ghi', 'Gohir.A06G159701' => 'ghi', 'Gohir.A10G240650' => 'ghi', 'Gohir.A10G240700' => 'ghi', 'Gohir.A13G013600' => 'ghi', 'Gohir.D01G220700' => 'ghi', 'Gohir.D06G165500' => 'ghi', 'Gohir.D10G252900' => 'ghi', 'Gohir.D13G014700' => 'ghi', 'Gorai.002G267300' => 'gra', 'Gorai.010G193000' => 'gra', 'Gorai.011G293200' => 'gra', 'Gorai.013G015900' => 'gra', 'GSVIVG01030243001' => 'vvi', 'HanXRQChr05g0132431' => 'han', 'HanXRQChr08g0222661' => 'han', 'HanXRQChr10g0287951' => 'han', 'HanXRQChr10g0287961' => 'han', 'HanXRQChr14g0458811' => 'han', 'Haze_17311' => 'cav', 'Haze_17317' => 'cav', 'Haze_21107' => 'cav', 'Haze_24427' => 'cav', 'Haze_24428' => 'cav', 'Hma1.2p1_0292F.1_g115680' => 'hma', 'Hma1.2p1_1421F.1_g282420' => 'hma', 'Hma1.2p1_1857F.1_g305480' => 'hma', 'Hma1.2p1_2229F.1_g317550' => 'hma', 'Hma1.2p1_2300F.1_g319260' => 'hma', 'Hma1.2p1_3169F.1_g333565' => 'hma', 'HPP92_012008' => 'vpl', 'HPP92_013850' => 'vpl', 'HPP92_013864' => 'vpl', 'HPP92_025115' => 'vpl', 'HPP92_025116' => 'vpl', 'Lalb_Chr01g0023501' => 'lal', 'Lalb_Chr08g0231371' => 'lal', 'Lalb_Chr11g0075151' => 'lal', 'Lalb_Chr20g0114651' => 'lal', 'Lalb_Chr23g0277161' => 'lal', 'Lj1g0020010' => 'lja', 'Lj1P963T38' => 'lonja', 'Lj2C64T17' => 'lonja', 'Lj2P1095T22' => 'lonja', 'Lj3P944T16' => 'lonja', 'Lj6g0018395' => 'lja', 'LjContig00141g0015376' => 'lja', 'Lsat_1_v5_gn_2_125861' => 'lsa', 'Lsat_1_v5_gn_5_173800' => 'lsa', 'Lsat_1_v5_gn_5_173820' => 'lsa', 'Lsat_1_v5_gn_8_13361' => 'lsa', 'Lsat_1_v5_gn_9_38300' => 'lsa', 'Manes.07G136900' => 'mes', 'Manes.09G113800' => 'mes', 'Manes.10G006800' => 'mes', 'Manes.16G094700' => 'mes', 'Mapoly0023s0147' => 'mpo', 'Mapoly0071s0035' => 'mpo', 'MBI15_g00253_MAGBIO' => 'mbi', 'MBI15_g34612_MAGBIO' => 'mbi', 'MBI15_g41192_MAGBIO' => 'mbi', 'MD01G1160900' => 'mdo', 'MD03G1057800' => 'mdo', 'MD04G1079700' => 'mdo', 'MD04G1168600' => 'mdo', 'MD07G1228900' => 'mdo', 'MD11G1060200' => 'mdo', 'MD12G1182200' => 'mdo', 'Medtr3g031270' => 'mtr', 'Medtr3g072030' => 'mtr', 'Medtr5g074500' => 'mtr', 'Medtr7g071760' => 'mtr', 'Medtr7g071790' => 'mtr', 'Medtr7g071820' => 'mtr', 'Medtr7g071840' => 'mtr', 'Medtr7g071970' => 'mtr', 'MELO3C019983.2' => 'cme', 'MELO3C020492.2' => 'cme', 'MELO3C026039.2' => 'cme', 'Migut.F00613' => 'egut', 'Migut.J00082' => 'egut', 'MSTRG.185' => 'ama', 'MSTRG.27291' => 'ama', 'MSTRG.8360' => 'ama', 'MSTRG.8910' => 'ama', 'Nitab4.5_0000047g0080' => 'nta', 'Nitab4.5_0000263g0030' => 'nta', 'Nitab4.5_0004961g0010' => 'nta', 'Nitab4.5_0009875g0010' => 'nta', 'Nn2g11048' => 'nnu', 'Nn2g13295' => 'nnu', 'Nn2g14169' => 'nnu', 'Oeu017754.1' => 'oeu', 'Oeu034523.1' => 'oeu', 'Oeu038713.1' => 'oeu', 'Os03g0299600' => 'osa', 'Os05g0342000' => 'osa', 'Os05g0342100' => 'osa', 'Os07g0691300' => 'osa', 'Peaxi162Scf00284g00016' => 'pax', 'Peaxi162Scf00304g00214' => 'pax', 'Peaxi162Scf00744g10017' => 'pax', 'PGR031G3984' => 'pgr', 'PGR044G1046' => 'pgr', 'PGR142G0934' => 'pgr', 'PGR142G3506' => 'pgr', 'PGSC0003DMG400006643' => 'stu', 'PGSC0003DMG400017895' => 'stu', 'PGSC0003DMG400026616' => 'stu', 'Phvul.001G247700' => 'pvu', 'Phvul.006G074700' => 'pvu', 'Phvul.008G251001' => 'pvu', 'Phvul.010G061500' => 'pvu', 'Potri.008G075200' => 'ptr', 'Potri.010G182200' => 'ptr', 'Potri.013G153801' => 'ptr', 'Potri.016G129500' => 'ptr', 'Potri.016G129600' => 'ptr', 'Potri.019G125900' => 'ptr', 'Pp3c11_3310' => 'ppa', 'Pp3c12_4310' => 'ppa', 'Pp3c13_21870' => 'ppa', 'Pp3c5_18730' => 'ppa', 'Prupe.2G258900' => 'ppe', 'Prupe.6G046200' => 'ppe', 'Prupe.6G046300' => 'ppe', 'Prupe.6G286900' => 'ppe', 'Psat0s1426g0080' => 'psa', 'Psat0s2636g0040' => 'psa', 'Psat5g152440' => 'psa', 'PSO017G1807' => 'pso', 'PSO135G0469' => 'pso', 'PSO170G1388' => 'pso', 'PSO170G6531' => 'pso', 'PSO339G0613' => 'pso', 'PSO384G2774' => 'pso', 'PSO724G0508' => 'pso', 'QL01p025777' => 'qlo', 'QL01p025785' => 'qlo', 'QL07p033556' => 'qlo', 'QL08p064204' => 'qlo', 'RcHm_v2.0_Chr3g0461091' => 'rch', 'RcHm_v2.0_Chr5g0071881' => 'rch', 'RcHm_v2.0_Chr5g0071891' => 'rch', 'Rhsim03G0149200' => 'rsi', 'Rhsim05G0227200' => 'rsi', 'Rhsim09G0182000' => 'rsi', 'Rhsim13G0062800' => 'rsi', 'Rhsim13G0062900' => 'rsi', 'Sabra08G0055700' => 'sbr', 'Sabra10G0139500' => 'sbr', 'Sabra16G0129100' => 'sbr', 'Sabra19G0123900' => 'sbr', 'Sabra19G0130700' => 'sbr', 'SalBow4G1534' => 'sbo', 'Sc02g0000660' => 'sci', 'Sc11g0005560' => 'sci', 'Sc14g0005570' => 'sci', 'Sed0006255' => 'sed', 'Sed0008318' => 'sed', 'Sed0012456' => 'sed', 'Sed0015931' => 'sed', 'SEGI_03244' => 'sgi', 'SEGI_08396' => 'sgi', 'SEGI_17931' => 'sgi', 'SEGI_21280' => 'sgi', 'SEGI_37092' => 'sgi', 'SEGI_38918' => 'sgi', 'SGA_v2.0_scaffold60G20941' => 'sas', 'SGA_v2.0_scaffold75G25040' => 'sas', 'SMO134G0085' => 'smo', 'SMO367G0022' => 'smo', 'Solyc06g048820.1' => 'sly', 'Solyc06g050760.1' => 'sly', 'Solyc09g014940.3' => 'sly', 'Sopen06g015110' => 'spe', 'Sopen06g016330' => 'spe', 'Sopen09g007900' => 'spe', 'Sp3g09320' => 'spa', 'Sp6g41000' => 'spa', 'TAR623G0164' => 'tar', 'TAR623G1633' => 'tar', 'THA.LOC104816523' => 'tha', 'THA.LOC104826836' => 'tha', 'Thecc.05G004200' => 'tca', 'Thecc.09G359300' => 'tca', 'Thecc.10G008000' => 'tca', 'Thhalv10014882m.g' => 'esa', 'Thhalv10022397m.g' => 'esa', 'TPR.G18665' => 'tpr', 'TPR.G22360' => 'tpr', 'TPR.G25343' => 'tpr', 'TPR.G25680' => 'tpr', 'TPR.G25708' => 'tpr', 'TPR.G28645' => 'tpr', 'TWI09G1182' => 'twi', 'TWI53G1305' => 'twi', 'TWI73G0091' => 'twi', 'TWI74G0143' => 'twi', 'TWI74G0396' => 'twi', 'TWI77G0026' => 'twi', 'TWI77G1013' => 'twi', 'unitig_0.g2178' => 'ugi', 'unitig_0.g254' => 'ugi', 'unitig_62.g23926' => 'ugi', 'unitig_699.g19376' => 'ugi', 'vmacro02907' => 'vma', 'vmacro02908' => 'vma', 'vmacro09988' => 'vma', 'vmacro09989' => 'vma', 'VMungo0331G0593' => 'vmu', 'VMungo0540G2383' => 'vmu', 'VMungo0647G0306' => 'vmu', 'VMungo1383G2639' => 'vmu', 'VMungo1383G3264' => 'vmu', 'Zm00001eb013910' => 'zma', 'Zm00001eb286540' => 'zma', 'Zm00001eb331450' => 'zma', 'Zm00001eb396640' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001699' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001699' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001699' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001699' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001699', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '381', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p36820' => 'bna', 'A05p38250' => 'bna', 'Aa31LG11G6430' => 'aar', 'Aa31LG1G23360' => 'aar', 'Aa31LG3G4140' => 'aar', 'Aa31LG3G4150' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1990' => 'aag', 'Actinidia00982' => 'ach', 'Actinidia11540' => 'ach', 'Actinidia29058' => 'ach', 'Actinidia29737' => 'ach', 'Ah.08g209900' => 'amhyb', 'AL3G22540' => 'aly', 'AL6G10310' => 'aly', 'Aqoxy3G01090' => 'aox', 'Aqoxy4G02177' => 'aox', 'Aqoxy4G02178' => 'aox', 'arahy.Tifrunner.gnm1.ann1.83Q2IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR5SC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHCF7T' => 'arhy', 'AT3G10985' => 'ath', 'AT5G01740' => 'ath', 'ATR0594G157' => 'atr', 'ATR0594G214' => 'atr', 'Atru.chr1.2578' => 'acertr', 'Atru.chr12.128' => 'acertr', 'Atru.chr8.2356' => 'acertr', 'AUR62012326' => 'cqu', 'AUR62022968' => 'cqu', 'BcaB04g18615' => 'bca', 'BcaB04g21161' => 'bca', 'BcaB05g21915' => 'bca', 'BcaB06g25668' => 'bca', 'BcaC01g04150' => 'bca', 'BcaC03g13087' => 'bca', 'BcaC05g29420' => 'bca', 'BcaC09g48144' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00130' => 'bna', 'BolC1t05341H' => 'bol', 'BolC2t06007H' => 'bol', 'BolC3t16722H' => 'bol', 'BolC5t34370H' => 'bol', 'BraA01t04210Z' => 'bra', 'BraA02t04680Z' => 'bra', 'BraA03t12845Z' => 'bra', 'BraA05t22618Z' => 'bra', 'C02p00100' => 'bna', 'C03p44550' => 'bna', 'C05p57070' => 'bna', 'CAN.G1302.5' => 'can', 'CAN.G169.8' => 'can', 'CAN.G510.2' => 'can', 'CANSAT35G1462' => 'cansat', 'CANSAT54G2558' => 'cansat', 'CANSAT56G0407' => 'cansat', 'CARHR085570' => 'chi', 'CARHR212100' => 'chi', 'Carub.0003s1027' => 'cru', 'Carub.0006s0009' => 'cru', 'Ca_05679_v3' => 'car', 'Ca_15016_v3' => 'car', 'Ca_15175_v3' => 'car', 'Ca_26098_v3' => 'car', 'Cc01_g14980' => 'ccan', 'Cc02_g05790' => 'ccan', 'Cc06_g00660' => 'ccan', 'CDE04G0996' => 'cde', 'CDE04G1332' => 'cde', 'CDE05G1552' => 'cde', 'CDE11G0706' => 'cde', 'Cfa011790' => 'cfa', 'Cfa017092' => 'cfa', 'Ciclev10012959m.g' => 'ccl', 'Ciclev10027637m.g' => 'ccl', 'Ciclev10033519m.g' => 'ccl', 'CiPaw.01G303300' => 'cil', 'CiPaw.02G197000' => 'cil', 'CiPaw.09G216700' => 'cil', 'CiPaw.10G161900' => 'cil', 'CiPaw.13G067800' => 'cil', 'CiPaw.13G067900' => 'cil', 'CiPaw.14G029400' => 'cil', 'ClCG03G000150' => 'cla', 'ClCG04G006570' => 'cla', 'ClCG11G005910' => 'cla', 'COL.COLO4_11170' => 'col', 'COL.COLO4_14431' => 'col', 'COL.COLO4_25819' => 'col', 'Cpa.g.sc19.105' => 'cpa', 'Cpa.g.sc2.339' => 'cpa', 'Cpa.g.sc33.104' => 'cpa', 'CsaV3_4G026930' => 'csa', 'CsaV3_6G002080' => 'csa', 'CSS0007613' => 'camsi', 'CSS0007791' => 'camsi', 'CSS0024332' => 'camsi', 'CSS0025635' => 'camsi', 'CSS0026721' => 'camsi', 'CSS0028087' => 'camsi', 'CSS0042067' => 'camsi', 'CSS0044168' => 'camsi', 'DCAR_015353' => 'dca', 'DCAR_018659' => 'dca', 'DCAR_024797' => 'dca', 'DCAR_028555' => 'dca', 'DCAR_030452' => 'dca', 'Dinv21805' => 'din', 'Dinv25288' => 'din', 'Dinv28704' => 'din', 'Dinv35427' => 'din', 'Dinv35428' => 'din', 'Duzib093G1144' => 'dzi', 'Duzib106G1689' => 'dzi', 'Duzib114G0340' => 'dzi', 'Duzib128G1932' => 'dzi', 'ECA238G2138' => 'eca', 'ECA247G0193' => 'eca', 'ECA247G2675' => 'eca', 'ECA248G0408' => 'eca', 'ECA248G0694' => 'eca', 'ECA248G2509' => 'eca', 'EL10Ac2g04303' => 'bvu', 'EL10Ac4g08234' => 'bvu', 'EL10Ac7g17024' => 'bvu', 'EL10Ac9g22503' => 'bvu', 'Eucgr.A00638' => 'egr', 'Eucgr.A00639' => 'egr', 'Eucgr.A00640' => 'egr', 'Eucgr.G03106' => 'egr', 'Eucgr.J00155' => 'egr', 'Eucgr.J01851' => 'egr', 'Eucgr.J01852' => 'egr', 'FAN01G0843' => 'fan', 'FAN02G1050' => 'fan', 'FAN03G1062' => 'fan', 'FAN05G1242' => 'fan', 'FAN05G4591' => 'fan', 'FAN06G4728' => 'fan', 'FAN09G4204' => 'fan', 'FAN10G1602' => 'fan', 'FAN11G0040' => 'fan', 'FAN11G1527' => 'fan', 'FAN14G0220' => 'fan', 'FAN14G3954' => 'fan', 'FAN16G1854' => 'fan', 'FAN16G2129' => 'fan', 'FAN21G1263' => 'fan', 'FAN21G3197' => 'fan', 'FAN25G0308' => 'fan', 'FvH4_3g39910' => 'fve', 'FvH4_3g39920' => 'fve', 'FvH4_6g10320' => 'fve', 'Glyma.03G041300' => 'gma', 'Glyma.09G279600' => 'gma', 'Glyma.11G163100' => 'gma', 'Glyma.11G163200' => 'gma', 'Glyma.11G234300' => 'gma', 'Glyma.14G200500' => 'gma', 'Glyma.18G022700' => 'gma', 'Glyma.18G056400' => 'gma', 'Glyma.18G056500' => 'gma', 'Glyma.18G209500' => 'gma', 'Gohir.A01G230601' => 'ghi', 'Gohir.A06G159701' => 'ghi', 'Gohir.A10G240650' => 'ghi', 'Gohir.A10G240700' => 'ghi', 'Gohir.A13G013600' => 'ghi', 'Gohir.D01G220700' => 'ghi', 'Gohir.D06G165500' => 'ghi', 'Gohir.D10G252900' => 'ghi', 'Gohir.D13G014700' => 'ghi', 'Gorai.002G267300' => 'gra', 'Gorai.010G193000' => 'gra', 'Gorai.011G293200' => 'gra', 'Gorai.013G015900' => 'gra', 'GSVIVG01030243001' => 'vvi', 'HanXRQChr05g0132431' => 'han', 'HanXRQChr08g0222661' => 'han', 'HanXRQChr10g0287951' => 'han', 'HanXRQChr10g0287961' => 'han', 'HanXRQChr14g0458811' => 'han', 'Haze_17311' => 'cav', 'Haze_17317' => 'cav', 'Haze_21107' => 'cav', 'Haze_24427' => 'cav', 'Haze_24428' => 'cav', 'Hma1.2p1_0292F.1_g115680' => 'hma', 'Hma1.2p1_1421F.1_g282420' => 'hma', 'Hma1.2p1_1857F.1_g305480' => 'hma', 'Hma1.2p1_2229F.1_g317550' => 'hma', 'Hma1.2p1_2300F.1_g319260' => 'hma', 'Hma1.2p1_3169F.1_g333565' => 'hma', 'HPP92_012008' => 'vpl', 'HPP92_013850' => 'vpl', 'HPP92_013864' => 'vpl', 'HPP92_025115' => 'vpl', 'HPP92_025116' => 'vpl', 'Lalb_Chr01g0023501' => 'lal', 'Lalb_Chr08g0231371' => 'lal', 'Lalb_Chr11g0075151' => 'lal', 'Lalb_Chr20g0114651' => 'lal', 'Lalb_Chr23g0277161' => 'lal', 'Lj1g0020010' => 'lja', 'Lj1P963T38' => 'lonja', 'Lj2C64T17' => 'lonja', 'Lj2P1095T22' => 'lonja', 'Lj3P944T16' => 'lonja', 'Lj6g0018395' => 'lja', 'LjContig00141g0015376' => 'lja', 'Lsat_1_v5_gn_2_125861' => 'lsa', 'Lsat_1_v5_gn_5_173800' => 'lsa', 'Lsat_1_v5_gn_5_173820' => 'lsa', 'Lsat_1_v5_gn_8_13361' => 'lsa', 'Lsat_1_v5_gn_9_38300' => 'lsa', 'Manes.07G136900' => 'mes', 'Manes.09G113800' => 'mes', 'Manes.10G006800' => 'mes', 'Manes.16G094700' => 'mes', 'Mapoly0023s0147' => 'mpo', 'Mapoly0071s0035' => 'mpo', 'MBI15_g00253_MAGBIO' => 'mbi', 'MBI15_g34612_MAGBIO' => 'mbi', 'MBI15_g41192_MAGBIO' => 'mbi', 'MD01G1160900' => 'mdo', 'MD03G1057800' => 'mdo', 'MD04G1079700' => 'mdo', 'MD04G1168600' => 'mdo', 'MD07G1228900' => 'mdo', 'MD11G1060200' => 'mdo', 'MD12G1182200' => 'mdo', 'Medtr3g031270' => 'mtr', 'Medtr3g072030' => 'mtr', 'Medtr5g074500' => 'mtr', 'Medtr7g071760' => 'mtr', 'Medtr7g071790' => 'mtr', 'Medtr7g071820' => 'mtr', 'Medtr7g071840' => 'mtr', 'Medtr7g071970' => 'mtr', 'MELO3C019983.2' => 'cme', 'MELO3C020492.2' => 'cme', 'MELO3C026039.2' => 'cme', 'Migut.F00613' => 'egut', 'Migut.J00082' => 'egut', 'MSTRG.185' => 'ama', 'MSTRG.27291' => 'ama', 'MSTRG.8360' => 'ama', 'MSTRG.8910' => 'ama', 'Nitab4.5_0000047g0080' => 'nta', 'Nitab4.5_0000263g0030' => 'nta', 'Nitab4.5_0004961g0010' => 'nta', 'Nitab4.5_0009875g0010' => 'nta', 'Nn2g11048' => 'nnu', 'Nn2g13295' => 'nnu', 'Nn2g14169' => 'nnu', 'Oeu017754.1' => 'oeu', 'Oeu034523.1' => 'oeu', 'Oeu038713.1' => 'oeu', 'Os03g0299600' => 'osa', 'Os05g0342000' => 'osa', 'Os05g0342100' => 'osa', 'Os07g0691300' => 'osa', 'Peaxi162Scf00284g00016' => 'pax', 'Peaxi162Scf00304g00214' => 'pax', 'Peaxi162Scf00744g10017' => 'pax', 'PGR031G3984' => 'pgr', 'PGR044G1046' => 'pgr', 'PGR142G0934' => 'pgr', 'PGR142G3506' => 'pgr', 'PGSC0003DMG400006643' => 'stu', 'PGSC0003DMG400017895' => 'stu', 'PGSC0003DMG400026616' => 'stu', 'Phvul.001G247700' => 'pvu', 'Phvul.006G074700' => 'pvu', 'Phvul.008G251001' => 'pvu', 'Phvul.010G061500' => 'pvu', 'Potri.008G075200' => 'ptr', 'Potri.010G182200' => 'ptr', 'Potri.013G153801' => 'ptr', 'Potri.016G129500' => 'ptr', 'Potri.016G129600' => 'ptr', 'Potri.019G125900' => 'ptr', 'Pp3c11_3310' => 'ppa', 'Pp3c12_4310' => 'ppa', 'Pp3c13_21870' => 'ppa', 'Pp3c5_18730' => 'ppa', 'Prupe.2G258900' => 'ppe', 'Prupe.6G046200' => 'ppe', 'Prupe.6G046300' => 'ppe', 'Prupe.6G286900' => 'ppe', 'Psat0s1426g0080' => 'psa', 'Psat0s2636g0040' => 'psa', 'Psat5g152440' => 'psa', 'PSO017G1807' => 'pso', 'PSO135G0469' => 'pso', 'PSO170G1388' => 'pso', 'PSO170G6531' => 'pso', 'PSO339G0613' => 'pso', 'PSO384G2774' => 'pso', 'PSO724G0508' => 'pso', 'QL01p025777' => 'qlo', 'QL01p025785' => 'qlo', 'QL07p033556' => 'qlo', 'QL08p064204' => 'qlo', 'RcHm_v2.0_Chr3g0461091' => 'rch', 'RcHm_v2.0_Chr5g0071881' => 'rch', 'RcHm_v2.0_Chr5g0071891' => 'rch', 'Rhsim03G0149200' => 'rsi', 'Rhsim05G0227200' => 'rsi', 'Rhsim09G0182000' => 'rsi', 'Rhsim13G0062800' => 'rsi', 'Rhsim13G0062900' => 'rsi', 'Sabra08G0055700' => 'sbr', 'Sabra10G0139500' => 'sbr', 'Sabra16G0129100' => 'sbr', 'Sabra19G0123900' => 'sbr', 'Sabra19G0130700' => 'sbr', 'SalBow4G1534' => 'sbo', 'Sc02g0000660' => 'sci', 'Sc11g0005560' => 'sci', 'Sc14g0005570' => 'sci', 'Sed0006255' => 'sed', 'Sed0008318' => 'sed', 'Sed0012456' => 'sed', 'Sed0015931' => 'sed', 'SEGI_03244' => 'sgi', 'SEGI_08396' => 'sgi', 'SEGI_17931' => 'sgi', 'SEGI_21280' => 'sgi', 'SEGI_37092' => 'sgi', 'SEGI_38918' => 'sgi', 'SGA_v2.0_scaffold60G20941' => 'sas', 'SGA_v2.0_scaffold75G25040' => 'sas', 'SMO134G0085' => 'smo', 'SMO367G0022' => 'smo', 'Solyc06g048820.1' => 'sly', 'Solyc06g050760.1' => 'sly', 'Solyc09g014940.3' => 'sly', 'Sopen06g015110' => 'spe', 'Sopen06g016330' => 'spe', 'Sopen09g007900' => 'spe', 'Sp3g09320' => 'spa', 'Sp6g41000' => 'spa', 'TAR623G0164' => 'tar', 'TAR623G1633' => 'tar', 'THA.LOC104816523' => 'tha', 'THA.LOC104826836' => 'tha', 'Thecc.05G004200' => 'tca', 'Thecc.09G359300' => 'tca', 'Thecc.10G008000' => 'tca', 'Thhalv10014882m.g' => 'esa', 'Thhalv10022397m.g' => 'esa', 'TPR.G18665' => 'tpr', 'TPR.G22360' => 'tpr', 'TPR.G25343' => 'tpr', 'TPR.G25680' => 'tpr', 'TPR.G25708' => 'tpr', 'TPR.G28645' => 'tpr', 'TWI09G1182' => 'twi', 'TWI53G1305' => 'twi', 'TWI73G0091' => 'twi', 'TWI74G0143' => 'twi', 'TWI74G0396' => 'twi', 'TWI77G0026' => 'twi', 'TWI77G1013' => 'twi', 'unitig_0.g2178' => 'ugi', 'unitig_0.g254' => 'ugi', 'unitig_62.g23926' => 'ugi', 'unitig_699.g19376' => 'ugi', 'vmacro02907' => 'vma', 'vmacro02908' => 'vma', 'vmacro09988' => 'vma', 'vmacro09989' => 'vma', 'VMungo0331G0593' => 'vmu', 'VMungo0540G2383' => 'vmu', 'VMungo0647G0306' => 'vmu', 'VMungo1383G2639' => 'vmu', 'VMungo1383G3264' => 'vmu', 'Zm00001eb013910' => 'zma', 'Zm00001eb286540' => 'zma', 'Zm00001eb331450' => 'zma', 'Zm00001eb396640' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001699', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001699' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001699', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '381', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001699' ) ), 'genes' => array( 'A03p36820' => 'bna', 'A05p38250' => 'bna', 'Aa31LG11G6430' => 'aar', 'Aa31LG1G23360' => 'aar', 'Aa31LG3G4140' => 'aar', 'Aa31LG3G4150' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1990' => 'aag', 'Actinidia00982' => 'ach', 'Actinidia11540' => 'ach', 'Actinidia29058' => 'ach', 'Actinidia29737' => 'ach', 'Ah.08g209900' => 'amhyb', 'AL3G22540' => 'aly', 'AL6G10310' => 'aly', 'Aqoxy3G01090' => 'aox', 'Aqoxy4G02177' => 'aox', 'Aqoxy4G02178' => 'aox', 'arahy.Tifrunner.gnm1.ann1.83Q2IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR5SC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHCF7T' => 'arhy', 'AT3G10985' => 'ath', 'AT5G01740' => 'ath', 'ATR0594G157' => 'atr', 'ATR0594G214' => 'atr', 'Atru.chr1.2578' => 'acertr', 'Atru.chr12.128' => 'acertr', 'Atru.chr8.2356' => 'acertr', 'AUR62012326' => 'cqu', 'AUR62022968' => 'cqu', 'BcaB04g18615' => 'bca', 'BcaB04g21161' => 'bca', 'BcaB05g21915' => 'bca', 'BcaB06g25668' => 'bca', 'BcaC01g04150' => 'bca', 'BcaC03g13087' => 'bca', 'BcaC05g29420' => 'bca', 'BcaC09g48144' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00130' => 'bna', 'BolC1t05341H' => 'bol', 'BolC2t06007H' => 'bol', 'BolC3t16722H' => 'bol', 'BolC5t34370H' => 'bol', 'BraA01t04210Z' => 'bra', 'BraA02t04680Z' => 'bra', 'BraA03t12845Z' => 'bra', 'BraA05t22618Z' => 'bra', 'C02p00100' => 'bna', 'C03p44550' => 'bna', 'C05p57070' => 'bna', 'CAN.G1302.5' => 'can', 'CAN.G169.8' => 'can', 'CAN.G510.2' => 'can', 'CANSAT35G1462' => 'cansat', 'CANSAT54G2558' => 'cansat', 'CANSAT56G0407' => 'cansat', 'CARHR085570' => 'chi', 'CARHR212100' => 'chi', 'Carub.0003s1027' => 'cru', 'Carub.0006s0009' => 'cru', 'Ca_05679_v3' => 'car', 'Ca_15016_v3' => 'car', 'Ca_15175_v3' => 'car', 'Ca_26098_v3' => 'car', 'Cc01_g14980' => 'ccan', 'Cc02_g05790' => 'ccan', 'Cc06_g00660' => 'ccan', 'CDE04G0996' => 'cde', 'CDE04G1332' => 'cde', 'CDE05G1552' => 'cde', 'CDE11G0706' => 'cde', 'Cfa011790' => 'cfa', 'Cfa017092' => 'cfa', 'Ciclev10012959m.g' => 'ccl', 'Ciclev10027637m.g' => 'ccl', 'Ciclev10033519m.g' => 'ccl', 'CiPaw.01G303300' => 'cil', 'CiPaw.02G197000' => 'cil', 'CiPaw.09G216700' => 'cil', 'CiPaw.10G161900' => 'cil', 'CiPaw.13G067800' => 'cil', 'CiPaw.13G067900' => 'cil', 'CiPaw.14G029400' => 'cil', 'ClCG03G000150' => 'cla', 'ClCG04G006570' => 'cla', 'ClCG11G005910' => 'cla', 'COL.COLO4_11170' => 'col', 'COL.COLO4_14431' => 'col', 'COL.COLO4_25819' => 'col', 'Cpa.g.sc19.105' => 'cpa', 'Cpa.g.sc2.339' => 'cpa', 'Cpa.g.sc33.104' => 'cpa', 'CsaV3_4G026930' => 'csa', 'CsaV3_6G002080' => 'csa', 'CSS0007613' => 'camsi', 'CSS0007791' => 'camsi', 'CSS0024332' => 'camsi', 'CSS0025635' => 'camsi', 'CSS0026721' => 'camsi', 'CSS0028087' => 'camsi', 'CSS0042067' => 'camsi', 'CSS0044168' => 'camsi', 'DCAR_015353' => 'dca', 'DCAR_018659' => 'dca', 'DCAR_024797' => 'dca', 'DCAR_028555' => 'dca', 'DCAR_030452' => 'dca', 'Dinv21805' => 'din', 'Dinv25288' => 'din', 'Dinv28704' => 'din', 'Dinv35427' => 'din', 'Dinv35428' => 'din', 'Duzib093G1144' => 'dzi', 'Duzib106G1689' => 'dzi', 'Duzib114G0340' => 'dzi', 'Duzib128G1932' => 'dzi', 'ECA238G2138' => 'eca', 'ECA247G0193' => 'eca', 'ECA247G2675' => 'eca', 'ECA248G0408' => 'eca', 'ECA248G0694' => 'eca', 'ECA248G2509' => 'eca', 'EL10Ac2g04303' => 'bvu', 'EL10Ac4g08234' => 'bvu', 'EL10Ac7g17024' => 'bvu', 'EL10Ac9g22503' => 'bvu', 'Eucgr.A00638' => 'egr', 'Eucgr.A00639' => 'egr', 'Eucgr.A00640' => 'egr', 'Eucgr.G03106' => 'egr', 'Eucgr.J00155' => 'egr', 'Eucgr.J01851' => 'egr', 'Eucgr.J01852' => 'egr', 'FAN01G0843' => 'fan', 'FAN02G1050' => 'fan', 'FAN03G1062' => 'fan', 'FAN05G1242' => 'fan', 'FAN05G4591' => 'fan', 'FAN06G4728' => 'fan', 'FAN09G4204' => 'fan', 'FAN10G1602' => 'fan', 'FAN11G0040' => 'fan', 'FAN11G1527' => 'fan', 'FAN14G0220' => 'fan', 'FAN14G3954' => 'fan', 'FAN16G1854' => 'fan', 'FAN16G2129' => 'fan', 'FAN21G1263' => 'fan', 'FAN21G3197' => 'fan', 'FAN25G0308' => 'fan', 'FvH4_3g39910' => 'fve', 'FvH4_3g39920' => 'fve', 'FvH4_6g10320' => 'fve', 'Glyma.03G041300' => 'gma', 'Glyma.09G279600' => 'gma', 'Glyma.11G163100' => 'gma', 'Glyma.11G163200' => 'gma', 'Glyma.11G234300' => 'gma', 'Glyma.14G200500' => 'gma', 'Glyma.18G022700' => 'gma', 'Glyma.18G056400' => 'gma', 'Glyma.18G056500' => 'gma', 'Glyma.18G209500' => 'gma', 'Gohir.A01G230601' => 'ghi', 'Gohir.A06G159701' => 'ghi', 'Gohir.A10G240650' => 'ghi', 'Gohir.A10G240700' => 'ghi', 'Gohir.A13G013600' => 'ghi', 'Gohir.D01G220700' => 'ghi', 'Gohir.D06G165500' => 'ghi', 'Gohir.D10G252900' => 'ghi', 'Gohir.D13G014700' => 'ghi', 'Gorai.002G267300' => 'gra', 'Gorai.010G193000' => 'gra', 'Gorai.011G293200' => 'gra', 'Gorai.013G015900' => 'gra', 'GSVIVG01030243001' => 'vvi', 'HanXRQChr05g0132431' => 'han', 'HanXRQChr08g0222661' => 'han', 'HanXRQChr10g0287951' => 'han', 'HanXRQChr10g0287961' => 'han', 'HanXRQChr14g0458811' => 'han', 'Haze_17311' => 'cav', 'Haze_17317' => 'cav', 'Haze_21107' => 'cav', 'Haze_24427' => 'cav', 'Haze_24428' => 'cav', 'Hma1.2p1_0292F.1_g115680' => 'hma', 'Hma1.2p1_1421F.1_g282420' => 'hma', 'Hma1.2p1_1857F.1_g305480' => 'hma', 'Hma1.2p1_2229F.1_g317550' => 'hma', 'Hma1.2p1_2300F.1_g319260' => 'hma', 'Hma1.2p1_3169F.1_g333565' => 'hma', 'HPP92_012008' => 'vpl', 'HPP92_013850' => 'vpl', 'HPP92_013864' => 'vpl', 'HPP92_025115' => 'vpl', 'HPP92_025116' => 'vpl', 'Lalb_Chr01g0023501' => 'lal', 'Lalb_Chr08g0231371' => 'lal', 'Lalb_Chr11g0075151' => 'lal', 'Lalb_Chr20g0114651' => 'lal', 'Lalb_Chr23g0277161' => 'lal', 'Lj1g0020010' => 'lja', 'Lj1P963T38' => 'lonja', 'Lj2C64T17' => 'lonja', 'Lj2P1095T22' => 'lonja', 'Lj3P944T16' => 'lonja', 'Lj6g0018395' => 'lja', 'LjContig00141g0015376' => 'lja', 'Lsat_1_v5_gn_2_125861' => 'lsa', 'Lsat_1_v5_gn_5_173800' => 'lsa', 'Lsat_1_v5_gn_5_173820' => 'lsa', 'Lsat_1_v5_gn_8_13361' => 'lsa', 'Lsat_1_v5_gn_9_38300' => 'lsa', 'Manes.07G136900' => 'mes', 'Manes.09G113800' => 'mes', 'Manes.10G006800' => 'mes', 'Manes.16G094700' => 'mes', 'Mapoly0023s0147' => 'mpo', 'Mapoly0071s0035' => 'mpo', 'MBI15_g00253_MAGBIO' => 'mbi', 'MBI15_g34612_MAGBIO' => 'mbi', 'MBI15_g41192_MAGBIO' => 'mbi', 'MD01G1160900' => 'mdo', 'MD03G1057800' => 'mdo', 'MD04G1079700' => 'mdo', 'MD04G1168600' => 'mdo', 'MD07G1228900' => 'mdo', 'MD11G1060200' => 'mdo', 'MD12G1182200' => 'mdo', 'Medtr3g031270' => 'mtr', 'Medtr3g072030' => 'mtr', 'Medtr5g074500' => 'mtr', 'Medtr7g071760' => 'mtr', 'Medtr7g071790' => 'mtr', 'Medtr7g071820' => 'mtr', 'Medtr7g071840' => 'mtr', 'Medtr7g071970' => 'mtr', 'MELO3C019983.2' => 'cme', 'MELO3C020492.2' => 'cme', 'MELO3C026039.2' => 'cme', 'Migut.F00613' => 'egut', 'Migut.J00082' => 'egut', 'MSTRG.185' => 'ama', 'MSTRG.27291' => 'ama', 'MSTRG.8360' => 'ama', 'MSTRG.8910' => 'ama', 'Nitab4.5_0000047g0080' => 'nta', 'Nitab4.5_0000263g0030' => 'nta', 'Nitab4.5_0004961g0010' => 'nta', 'Nitab4.5_0009875g0010' => 'nta', 'Nn2g11048' => 'nnu', 'Nn2g13295' => 'nnu', 'Nn2g14169' => 'nnu', 'Oeu017754.1' => 'oeu', 'Oeu034523.1' => 'oeu', 'Oeu038713.1' => 'oeu', 'Os03g0299600' => 'osa', 'Os05g0342000' => 'osa', 'Os05g0342100' => 'osa', 'Os07g0691300' => 'osa', 'Peaxi162Scf00284g00016' => 'pax', 'Peaxi162Scf00304g00214' => 'pax', 'Peaxi162Scf00744g10017' => 'pax', 'PGR031G3984' => 'pgr', 'PGR044G1046' => 'pgr', 'PGR142G0934' => 'pgr', 'PGR142G3506' => 'pgr', 'PGSC0003DMG400006643' => 'stu', 'PGSC0003DMG400017895' => 'stu', 'PGSC0003DMG400026616' => 'stu', 'Phvul.001G247700' => 'pvu', 'Phvul.006G074700' => 'pvu', 'Phvul.008G251001' => 'pvu', 'Phvul.010G061500' => 'pvu', 'Potri.008G075200' => 'ptr', 'Potri.010G182200' => 'ptr', 'Potri.013G153801' => 'ptr', 'Potri.016G129500' => 'ptr', 'Potri.016G129600' => 'ptr', 'Potri.019G125900' => 'ptr', 'Pp3c11_3310' => 'ppa', 'Pp3c12_4310' => 'ppa', 'Pp3c13_21870' => 'ppa', 'Pp3c5_18730' => 'ppa', 'Prupe.2G258900' => 'ppe', 'Prupe.6G046200' => 'ppe', 'Prupe.6G046300' => 'ppe', 'Prupe.6G286900' => 'ppe', 'Psat0s1426g0080' => 'psa', 'Psat0s2636g0040' => 'psa', 'Psat5g152440' => 'psa', 'PSO017G1807' => 'pso', 'PSO135G0469' => 'pso', 'PSO170G1388' => 'pso', 'PSO170G6531' => 'pso', 'PSO339G0613' => 'pso', 'PSO384G2774' => 'pso', 'PSO724G0508' => 'pso', 'QL01p025777' => 'qlo', 'QL01p025785' => 'qlo', 'QL07p033556' => 'qlo', 'QL08p064204' => 'qlo', 'RcHm_v2.0_Chr3g0461091' => 'rch', 'RcHm_v2.0_Chr5g0071881' => 'rch', 'RcHm_v2.0_Chr5g0071891' => 'rch', 'Rhsim03G0149200' => 'rsi', 'Rhsim05G0227200' => 'rsi', 'Rhsim09G0182000' => 'rsi', 'Rhsim13G0062800' => 'rsi', 'Rhsim13G0062900' => 'rsi', 'Sabra08G0055700' => 'sbr', 'Sabra10G0139500' => 'sbr', 'Sabra16G0129100' => 'sbr', 'Sabra19G0123900' => 'sbr', 'Sabra19G0130700' => 'sbr', 'SalBow4G1534' => 'sbo', 'Sc02g0000660' => 'sci', 'Sc11g0005560' => 'sci', 'Sc14g0005570' => 'sci', 'Sed0006255' => 'sed', 'Sed0008318' => 'sed', 'Sed0012456' => 'sed', 'Sed0015931' => 'sed', 'SEGI_03244' => 'sgi', 'SEGI_08396' => 'sgi', 'SEGI_17931' => 'sgi', 'SEGI_21280' => 'sgi', 'SEGI_37092' => 'sgi', 'SEGI_38918' => 'sgi', 'SGA_v2.0_scaffold60G20941' => 'sas', 'SGA_v2.0_scaffold75G25040' => 'sas', 'SMO134G0085' => 'smo', 'SMO367G0022' => 'smo', 'Solyc06g048820.1' => 'sly', 'Solyc06g050760.1' => 'sly', 'Solyc09g014940.3' => 'sly', 'Sopen06g015110' => 'spe', 'Sopen06g016330' => 'spe', 'Sopen09g007900' => 'spe', 'Sp3g09320' => 'spa', 'Sp6g41000' => 'spa', 'TAR623G0164' => 'tar', 'TAR623G1633' => 'tar', 'THA.LOC104816523' => 'tha', 'THA.LOC104826836' => 'tha', 'Thecc.05G004200' => 'tca', 'Thecc.09G359300' => 'tca', 'Thecc.10G008000' => 'tca', 'Thhalv10014882m.g' => 'esa', 'Thhalv10022397m.g' => 'esa', 'TPR.G18665' => 'tpr', 'TPR.G22360' => 'tpr', 'TPR.G25343' => 'tpr', 'TPR.G25680' => 'tpr', 'TPR.G25708' => 'tpr', 'TPR.G28645' => 'tpr', 'TWI09G1182' => 'twi', 'TWI53G1305' => 'twi', 'TWI73G0091' => 'twi', 'TWI74G0143' => 'twi', 'TWI74G0396' => 'twi', 'TWI77G0026' => 'twi', 'TWI77G1013' => 'twi', 'unitig_0.g2178' => 'ugi', 'unitig_0.g254' => 'ugi', 'unitig_62.g23926' => 'ugi', 'unitig_699.g19376' => 'ugi', 'vmacro02907' => 'vma', 'vmacro02908' => 'vma', 'vmacro09988' => 'vma', 'vmacro09989' => 'vma', 'VMungo0331G0593' => 'vmu', 'VMungo0540G2383' => 'vmu', 'VMungo0647G0306' => 'vmu', 'VMungo1383G2639' => 'vmu', 'VMungo1383G3264' => 'vmu', 'Zm00001eb013910' => 'zma', 'Zm00001eb286540' => 'zma', 'Zm00001eb331450' => 'zma', 'Zm00001eb396640' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001699' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001699' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001699' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001699' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001699', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '381', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p36820' => 'bna', 'A05p38250' => 'bna', 'Aa31LG11G6430' => 'aar', 'Aa31LG1G23360' => 'aar', 'Aa31LG3G4140' => 'aar', 'Aa31LG3G4150' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1990' => 'aag', 'Actinidia00982' => 'ach', 'Actinidia11540' => 'ach', 'Actinidia29058' => 'ach', 'Actinidia29737' => 'ach', 'Ah.08g209900' => 'amhyb', 'AL3G22540' => 'aly', 'AL6G10310' => 'aly', 'Aqoxy3G01090' => 'aox', 'Aqoxy4G02177' => 'aox', 'Aqoxy4G02178' => 'aox', 'arahy.Tifrunner.gnm1.ann1.83Q2IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR5SC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHCF7T' => 'arhy', 'AT3G10985' => 'ath', 'AT5G01740' => 'ath', 'ATR0594G157' => 'atr', 'ATR0594G214' => 'atr', 'Atru.chr1.2578' => 'acertr', 'Atru.chr12.128' => 'acertr', 'Atru.chr8.2356' => 'acertr', 'AUR62012326' => 'cqu', 'AUR62022968' => 'cqu', 'BcaB04g18615' => 'bca', 'BcaB04g21161' => 'bca', 'BcaB05g21915' => 'bca', 'BcaB06g25668' => 'bca', 'BcaC01g04150' => 'bca', 'BcaC03g13087' => 'bca', 'BcaC05g29420' => 'bca', 'BcaC09g48144' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00130' => 'bna', 'BolC1t05341H' => 'bol', 'BolC2t06007H' => 'bol', 'BolC3t16722H' => 'bol', 'BolC5t34370H' => 'bol', 'BraA01t04210Z' => 'bra', 'BraA02t04680Z' => 'bra', 'BraA03t12845Z' => 'bra', 'BraA05t22618Z' => 'bra', 'C02p00100' => 'bna', 'C03p44550' => 'bna', 'C05p57070' => 'bna', 'CAN.G1302.5' => 'can', 'CAN.G169.8' => 'can', 'CAN.G510.2' => 'can', 'CANSAT35G1462' => 'cansat', 'CANSAT54G2558' => 'cansat', 'CANSAT56G0407' => 'cansat', 'CARHR085570' => 'chi', 'CARHR212100' => 'chi', 'Carub.0003s1027' => 'cru', 'Carub.0006s0009' => 'cru', 'Ca_05679_v3' => 'car', 'Ca_15016_v3' => 'car', 'Ca_15175_v3' => 'car', 'Ca_26098_v3' => 'car', 'Cc01_g14980' => 'ccan', 'Cc02_g05790' => 'ccan', 'Cc06_g00660' => 'ccan', 'CDE04G0996' => 'cde', 'CDE04G1332' => 'cde', 'CDE05G1552' => 'cde', 'CDE11G0706' => 'cde', 'Cfa011790' => 'cfa', 'Cfa017092' => 'cfa', 'Ciclev10012959m.g' => 'ccl', 'Ciclev10027637m.g' => 'ccl', 'Ciclev10033519m.g' => 'ccl', 'CiPaw.01G303300' => 'cil', 'CiPaw.02G197000' => 'cil', 'CiPaw.09G216700' => 'cil', 'CiPaw.10G161900' => 'cil', 'CiPaw.13G067800' => 'cil', 'CiPaw.13G067900' => 'cil', 'CiPaw.14G029400' => 'cil', 'ClCG03G000150' => 'cla', 'ClCG04G006570' => 'cla', 'ClCG11G005910' => 'cla', 'COL.COLO4_11170' => 'col', 'COL.COLO4_14431' => 'col', 'COL.COLO4_25819' => 'col', 'Cpa.g.sc19.105' => 'cpa', 'Cpa.g.sc2.339' => 'cpa', 'Cpa.g.sc33.104' => 'cpa', 'CsaV3_4G026930' => 'csa', 'CsaV3_6G002080' => 'csa', 'CSS0007613' => 'camsi', 'CSS0007791' => 'camsi', 'CSS0024332' => 'camsi', 'CSS0025635' => 'camsi', 'CSS0026721' => 'camsi', 'CSS0028087' => 'camsi', 'CSS0042067' => 'camsi', 'CSS0044168' => 'camsi', 'DCAR_015353' => 'dca', 'DCAR_018659' => 'dca', 'DCAR_024797' => 'dca', 'DCAR_028555' => 'dca', 'DCAR_030452' => 'dca', 'Dinv21805' => 'din', 'Dinv25288' => 'din', 'Dinv28704' => 'din', 'Dinv35427' => 'din', 'Dinv35428' => 'din', 'Duzib093G1144' => 'dzi', 'Duzib106G1689' => 'dzi', 'Duzib114G0340' => 'dzi', 'Duzib128G1932' => 'dzi', 'ECA238G2138' => 'eca', 'ECA247G0193' => 'eca', 'ECA247G2675' => 'eca', 'ECA248G0408' => 'eca', 'ECA248G0694' => 'eca', 'ECA248G2509' => 'eca', 'EL10Ac2g04303' => 'bvu', 'EL10Ac4g08234' => 'bvu', 'EL10Ac7g17024' => 'bvu', 'EL10Ac9g22503' => 'bvu', 'Eucgr.A00638' => 'egr', 'Eucgr.A00639' => 'egr', 'Eucgr.A00640' => 'egr', 'Eucgr.G03106' => 'egr', 'Eucgr.J00155' => 'egr', 'Eucgr.J01851' => 'egr', 'Eucgr.J01852' => 'egr', 'FAN01G0843' => 'fan', 'FAN02G1050' => 'fan', 'FAN03G1062' => 'fan', 'FAN05G1242' => 'fan', 'FAN05G4591' => 'fan', 'FAN06G4728' => 'fan', 'FAN09G4204' => 'fan', 'FAN10G1602' => 'fan', 'FAN11G0040' => 'fan', 'FAN11G1527' => 'fan', 'FAN14G0220' => 'fan', 'FAN14G3954' => 'fan', 'FAN16G1854' => 'fan', 'FAN16G2129' => 'fan', 'FAN21G1263' => 'fan', 'FAN21G3197' => 'fan', 'FAN25G0308' => 'fan', 'FvH4_3g39910' => 'fve', 'FvH4_3g39920' => 'fve', 'FvH4_6g10320' => 'fve', 'Glyma.03G041300' => 'gma', 'Glyma.09G279600' => 'gma', 'Glyma.11G163100' => 'gma', 'Glyma.11G163200' => 'gma', 'Glyma.11G234300' => 'gma', 'Glyma.14G200500' => 'gma', 'Glyma.18G022700' => 'gma', 'Glyma.18G056400' => 'gma', 'Glyma.18G056500' => 'gma', 'Glyma.18G209500' => 'gma', 'Gohir.A01G230601' => 'ghi', 'Gohir.A06G159701' => 'ghi', 'Gohir.A10G240650' => 'ghi', 'Gohir.A10G240700' => 'ghi', 'Gohir.A13G013600' => 'ghi', 'Gohir.D01G220700' => 'ghi', 'Gohir.D06G165500' => 'ghi', 'Gohir.D10G252900' => 'ghi', 'Gohir.D13G014700' => 'ghi', 'Gorai.002G267300' => 'gra', 'Gorai.010G193000' => 'gra', 'Gorai.011G293200' => 'gra', 'Gorai.013G015900' => 'gra', 'GSVIVG01030243001' => 'vvi', 'HanXRQChr05g0132431' => 'han', 'HanXRQChr08g0222661' => 'han', 'HanXRQChr10g0287951' => 'han', 'HanXRQChr10g0287961' => 'han', 'HanXRQChr14g0458811' => 'han', 'Haze_17311' => 'cav', 'Haze_17317' => 'cav', 'Haze_21107' => 'cav', 'Haze_24427' => 'cav', 'Haze_24428' => 'cav', 'Hma1.2p1_0292F.1_g115680' => 'hma', 'Hma1.2p1_1421F.1_g282420' => 'hma', 'Hma1.2p1_1857F.1_g305480' => 'hma', 'Hma1.2p1_2229F.1_g317550' => 'hma', 'Hma1.2p1_2300F.1_g319260' => 'hma', 'Hma1.2p1_3169F.1_g333565' => 'hma', 'HPP92_012008' => 'vpl', 'HPP92_013850' => 'vpl', 'HPP92_013864' => 'vpl', 'HPP92_025115' => 'vpl', 'HPP92_025116' => 'vpl', 'Lalb_Chr01g0023501' => 'lal', 'Lalb_Chr08g0231371' => 'lal', 'Lalb_Chr11g0075151' => 'lal', 'Lalb_Chr20g0114651' => 'lal', 'Lalb_Chr23g0277161' => 'lal', 'Lj1g0020010' => 'lja', 'Lj1P963T38' => 'lonja', 'Lj2C64T17' => 'lonja', 'Lj2P1095T22' => 'lonja', 'Lj3P944T16' => 'lonja', 'Lj6g0018395' => 'lja', 'LjContig00141g0015376' => 'lja', 'Lsat_1_v5_gn_2_125861' => 'lsa', 'Lsat_1_v5_gn_5_173800' => 'lsa', 'Lsat_1_v5_gn_5_173820' => 'lsa', 'Lsat_1_v5_gn_8_13361' => 'lsa', 'Lsat_1_v5_gn_9_38300' => 'lsa', 'Manes.07G136900' => 'mes', 'Manes.09G113800' => 'mes', 'Manes.10G006800' => 'mes', 'Manes.16G094700' => 'mes', 'Mapoly0023s0147' => 'mpo', 'Mapoly0071s0035' => 'mpo', 'MBI15_g00253_MAGBIO' => 'mbi', 'MBI15_g34612_MAGBIO' => 'mbi', 'MBI15_g41192_MAGBIO' => 'mbi', 'MD01G1160900' => 'mdo', 'MD03G1057800' => 'mdo', 'MD04G1079700' => 'mdo', 'MD04G1168600' => 'mdo', 'MD07G1228900' => 'mdo', 'MD11G1060200' => 'mdo', 'MD12G1182200' => 'mdo', 'Medtr3g031270' => 'mtr', 'Medtr3g072030' => 'mtr', 'Medtr5g074500' => 'mtr', 'Medtr7g071760' => 'mtr', 'Medtr7g071790' => 'mtr', 'Medtr7g071820' => 'mtr', 'Medtr7g071840' => 'mtr', 'Medtr7g071970' => 'mtr', 'MELO3C019983.2' => 'cme', 'MELO3C020492.2' => 'cme', 'MELO3C026039.2' => 'cme', 'Migut.F00613' => 'egut', 'Migut.J00082' => 'egut', 'MSTRG.185' => 'ama', 'MSTRG.27291' => 'ama', 'MSTRG.8360' => 'ama', 'MSTRG.8910' => 'ama', 'Nitab4.5_0000047g0080' => 'nta', 'Nitab4.5_0000263g0030' => 'nta', 'Nitab4.5_0004961g0010' => 'nta', 'Nitab4.5_0009875g0010' => 'nta', 'Nn2g11048' => 'nnu', 'Nn2g13295' => 'nnu', 'Nn2g14169' => 'nnu', 'Oeu017754.1' => 'oeu', 'Oeu034523.1' => 'oeu', 'Oeu038713.1' => 'oeu', 'Os03g0299600' => 'osa', 'Os05g0342000' => 'osa', 'Os05g0342100' => 'osa', 'Os07g0691300' => 'osa', 'Peaxi162Scf00284g00016' => 'pax', 'Peaxi162Scf00304g00214' => 'pax', 'Peaxi162Scf00744g10017' => 'pax', 'PGR031G3984' => 'pgr', 'PGR044G1046' => 'pgr', 'PGR142G0934' => 'pgr', 'PGR142G3506' => 'pgr', 'PGSC0003DMG400006643' => 'stu', 'PGSC0003DMG400017895' => 'stu', 'PGSC0003DMG400026616' => 'stu', 'Phvul.001G247700' => 'pvu', 'Phvul.006G074700' => 'pvu', 'Phvul.008G251001' => 'pvu', 'Phvul.010G061500' => 'pvu', 'Potri.008G075200' => 'ptr', 'Potri.010G182200' => 'ptr', 'Potri.013G153801' => 'ptr', 'Potri.016G129500' => 'ptr', 'Potri.016G129600' => 'ptr', 'Potri.019G125900' => 'ptr', 'Pp3c11_3310' => 'ppa', 'Pp3c12_4310' => 'ppa', 'Pp3c13_21870' => 'ppa', 'Pp3c5_18730' => 'ppa', 'Prupe.2G258900' => 'ppe', 'Prupe.6G046200' => 'ppe', 'Prupe.6G046300' => 'ppe', 'Prupe.6G286900' => 'ppe', 'Psat0s1426g0080' => 'psa', 'Psat0s2636g0040' => 'psa', 'Psat5g152440' => 'psa', 'PSO017G1807' => 'pso', 'PSO135G0469' => 'pso', 'PSO170G1388' => 'pso', 'PSO170G6531' => 'pso', 'PSO339G0613' => 'pso', 'PSO384G2774' => 'pso', 'PSO724G0508' => 'pso', 'QL01p025777' => 'qlo', 'QL01p025785' => 'qlo', 'QL07p033556' => 'qlo', 'QL08p064204' => 'qlo', 'RcHm_v2.0_Chr3g0461091' => 'rch', 'RcHm_v2.0_Chr5g0071881' => 'rch', 'RcHm_v2.0_Chr5g0071891' => 'rch', 'Rhsim03G0149200' => 'rsi', 'Rhsim05G0227200' => 'rsi', 'Rhsim09G0182000' => 'rsi', 'Rhsim13G0062800' => 'rsi', 'Rhsim13G0062900' => 'rsi', 'Sabra08G0055700' => 'sbr', 'Sabra10G0139500' => 'sbr', 'Sabra16G0129100' => 'sbr', 'Sabra19G0123900' => 'sbr', 'Sabra19G0130700' => 'sbr', 'SalBow4G1534' => 'sbo', 'Sc02g0000660' => 'sci', 'Sc11g0005560' => 'sci', 'Sc14g0005570' => 'sci', 'Sed0006255' => 'sed', 'Sed0008318' => 'sed', 'Sed0012456' => 'sed', 'Sed0015931' => 'sed', 'SEGI_03244' => 'sgi', 'SEGI_08396' => 'sgi', 'SEGI_17931' => 'sgi', 'SEGI_21280' => 'sgi', 'SEGI_37092' => 'sgi', 'SEGI_38918' => 'sgi', 'SGA_v2.0_scaffold60G20941' => 'sas', 'SGA_v2.0_scaffold75G25040' => 'sas', 'SMO134G0085' => 'smo', 'SMO367G0022' => 'smo', 'Solyc06g048820.1' => 'sly', 'Solyc06g050760.1' => 'sly', 'Solyc09g014940.3' => 'sly', 'Sopen06g015110' => 'spe', 'Sopen06g016330' => 'spe', 'Sopen09g007900' => 'spe', 'Sp3g09320' => 'spa', 'Sp6g41000' => 'spa', 'TAR623G0164' => 'tar', 'TAR623G1633' => 'tar', 'THA.LOC104816523' => 'tha', 'THA.LOC104826836' => 'tha', 'Thecc.05G004200' => 'tca', 'Thecc.09G359300' => 'tca', 'Thecc.10G008000' => 'tca', 'Thhalv10014882m.g' => 'esa', 'Thhalv10022397m.g' => 'esa', 'TPR.G18665' => 'tpr', 'TPR.G22360' => 'tpr', 'TPR.G25343' => 'tpr', 'TPR.G25680' => 'tpr', 'TPR.G25708' => 'tpr', 'TPR.G28645' => 'tpr', 'TWI09G1182' => 'twi', 'TWI53G1305' => 'twi', 'TWI73G0091' => 'twi', 'TWI74G0143' => 'twi', 'TWI74G0396' => 'twi', 'TWI77G0026' => 'twi', 'TWI77G1013' => 'twi', 'unitig_0.g2178' => 'ugi', 'unitig_0.g254' => 'ugi', 'unitig_62.g23926' => 'ugi', 'unitig_699.g19376' => 'ugi', 'vmacro02907' => 'vma', 'vmacro02908' => 'vma', 'vmacro09988' => 'vma', 'vmacro09989' => 'vma', 'VMungo0331G0593' => 'vmu', 'VMungo0540G2383' => 'vmu', 'VMungo0647G0306' => 'vmu', 'VMungo1383G2639' => 'vmu', 'VMungo1383G3264' => 'vmu', 'Zm00001eb013910' => 'zma', 'Zm00001eb286540' => 'zma', 'Zm00001eb331450' => 'zma', 'Zm00001eb396640' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001699', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001699' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001699', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '381', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001699' ) ), 'genes' => array( 'A03p36820' => 'bna', 'A05p38250' => 'bna', 'Aa31LG11G6430' => 'aar', 'Aa31LG1G23360' => 'aar', 'Aa31LG3G4140' => 'aar', 'Aa31LG3G4150' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1990' => 'aag', 'Actinidia00982' => 'ach', 'Actinidia11540' => 'ach', 'Actinidia29058' => 'ach', 'Actinidia29737' => 'ach', 'Ah.08g209900' => 'amhyb', 'AL3G22540' => 'aly', 'AL6G10310' => 'aly', 'Aqoxy3G01090' => 'aox', 'Aqoxy4G02177' => 'aox', 'Aqoxy4G02178' => 'aox', 'arahy.Tifrunner.gnm1.ann1.83Q2IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR5SC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHCF7T' => 'arhy', 'AT3G10985' => 'ath', 'AT5G01740' => 'ath', 'ATR0594G157' => 'atr', 'ATR0594G214' => 'atr', 'Atru.chr1.2578' => 'acertr', 'Atru.chr12.128' => 'acertr', 'Atru.chr8.2356' => 'acertr', 'AUR62012326' => 'cqu', 'AUR62022968' => 'cqu', 'BcaB04g18615' => 'bca', 'BcaB04g21161' => 'bca', 'BcaB05g21915' => 'bca', 'BcaB06g25668' => 'bca', 'BcaC01g04150' => 'bca', 'BcaC03g13087' => 'bca', 'BcaC05g29420' => 'bca', 'BcaC09g48144' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00130' => 'bna', 'BolC1t05341H' => 'bol', 'BolC2t06007H' => 'bol', 'BolC3t16722H' => 'bol', 'BolC5t34370H' => 'bol', 'BraA01t04210Z' => 'bra', 'BraA02t04680Z' => 'bra', 'BraA03t12845Z' => 'bra', 'BraA05t22618Z' => 'bra', 'C02p00100' => 'bna', 'C03p44550' => 'bna', 'C05p57070' => 'bna', 'CAN.G1302.5' => 'can', 'CAN.G169.8' => 'can', 'CAN.G510.2' => 'can', 'CANSAT35G1462' => 'cansat', 'CANSAT54G2558' => 'cansat', 'CANSAT56G0407' => 'cansat', 'CARHR085570' => 'chi', 'CARHR212100' => 'chi', 'Carub.0003s1027' => 'cru', 'Carub.0006s0009' => 'cru', 'Ca_05679_v3' => 'car', 'Ca_15016_v3' => 'car', 'Ca_15175_v3' => 'car', 'Ca_26098_v3' => 'car', 'Cc01_g14980' => 'ccan', 'Cc02_g05790' => 'ccan', 'Cc06_g00660' => 'ccan', 'CDE04G0996' => 'cde', 'CDE04G1332' => 'cde', 'CDE05G1552' => 'cde', 'CDE11G0706' => 'cde', 'Cfa011790' => 'cfa', 'Cfa017092' => 'cfa', 'Ciclev10012959m.g' => 'ccl', 'Ciclev10027637m.g' => 'ccl', 'Ciclev10033519m.g' => 'ccl', 'CiPaw.01G303300' => 'cil', 'CiPaw.02G197000' => 'cil', 'CiPaw.09G216700' => 'cil', 'CiPaw.10G161900' => 'cil', 'CiPaw.13G067800' => 'cil', 'CiPaw.13G067900' => 'cil', 'CiPaw.14G029400' => 'cil', 'ClCG03G000150' => 'cla', 'ClCG04G006570' => 'cla', 'ClCG11G005910' => 'cla', 'COL.COLO4_11170' => 'col', 'COL.COLO4_14431' => 'col', 'COL.COLO4_25819' => 'col', 'Cpa.g.sc19.105' => 'cpa', 'Cpa.g.sc2.339' => 'cpa', 'Cpa.g.sc33.104' => 'cpa', 'CsaV3_4G026930' => 'csa', 'CsaV3_6G002080' => 'csa', 'CSS0007613' => 'camsi', 'CSS0007791' => 'camsi', 'CSS0024332' => 'camsi', 'CSS0025635' => 'camsi', 'CSS0026721' => 'camsi', 'CSS0028087' => 'camsi', 'CSS0042067' => 'camsi', 'CSS0044168' => 'camsi', 'DCAR_015353' => 'dca', 'DCAR_018659' => 'dca', 'DCAR_024797' => 'dca', 'DCAR_028555' => 'dca', 'DCAR_030452' => 'dca', 'Dinv21805' => 'din', 'Dinv25288' => 'din', 'Dinv28704' => 'din', 'Dinv35427' => 'din', 'Dinv35428' => 'din', 'Duzib093G1144' => 'dzi', 'Duzib106G1689' => 'dzi', 'Duzib114G0340' => 'dzi', 'Duzib128G1932' => 'dzi', 'ECA238G2138' => 'eca', 'ECA247G0193' => 'eca', 'ECA247G2675' => 'eca', 'ECA248G0408' => 'eca', 'ECA248G0694' => 'eca', 'ECA248G2509' => 'eca', 'EL10Ac2g04303' => 'bvu', 'EL10Ac4g08234' => 'bvu', 'EL10Ac7g17024' => 'bvu', 'EL10Ac9g22503' => 'bvu', 'Eucgr.A00638' => 'egr', 'Eucgr.A00639' => 'egr', 'Eucgr.A00640' => 'egr', 'Eucgr.G03106' => 'egr', 'Eucgr.J00155' => 'egr', 'Eucgr.J01851' => 'egr', 'Eucgr.J01852' => 'egr', 'FAN01G0843' => 'fan', 'FAN02G1050' => 'fan', 'FAN03G1062' => 'fan', 'FAN05G1242' => 'fan', 'FAN05G4591' => 'fan', 'FAN06G4728' => 'fan', 'FAN09G4204' => 'fan', 'FAN10G1602' => 'fan', 'FAN11G0040' => 'fan', 'FAN11G1527' => 'fan', 'FAN14G0220' => 'fan', 'FAN14G3954' => 'fan', 'FAN16G1854' => 'fan', 'FAN16G2129' => 'fan', 'FAN21G1263' => 'fan', 'FAN21G3197' => 'fan', 'FAN25G0308' => 'fan', 'FvH4_3g39910' => 'fve', 'FvH4_3g39920' => 'fve', 'FvH4_6g10320' => 'fve', 'Glyma.03G041300' => 'gma', 'Glyma.09G279600' => 'gma', 'Glyma.11G163100' => 'gma', 'Glyma.11G163200' => 'gma', 'Glyma.11G234300' => 'gma', 'Glyma.14G200500' => 'gma', 'Glyma.18G022700' => 'gma', 'Glyma.18G056400' => 'gma', 'Glyma.18G056500' => 'gma', 'Glyma.18G209500' => 'gma', 'Gohir.A01G230601' => 'ghi', 'Gohir.A06G159701' => 'ghi', 'Gohir.A10G240650' => 'ghi', 'Gohir.A10G240700' => 'ghi', 'Gohir.A13G013600' => 'ghi', 'Gohir.D01G220700' => 'ghi', 'Gohir.D06G165500' => 'ghi', 'Gohir.D10G252900' => 'ghi', 'Gohir.D13G014700' => 'ghi', 'Gorai.002G267300' => 'gra', 'Gorai.010G193000' => 'gra', 'Gorai.011G293200' => 'gra', 'Gorai.013G015900' => 'gra', 'GSVIVG01030243001' => 'vvi', 'HanXRQChr05g0132431' => 'han', 'HanXRQChr08g0222661' => 'han', 'HanXRQChr10g0287951' => 'han', 'HanXRQChr10g0287961' => 'han', 'HanXRQChr14g0458811' => 'han', 'Haze_17311' => 'cav', 'Haze_17317' => 'cav', 'Haze_21107' => 'cav', 'Haze_24427' => 'cav', 'Haze_24428' => 'cav', 'Hma1.2p1_0292F.1_g115680' => 'hma', 'Hma1.2p1_1421F.1_g282420' => 'hma', 'Hma1.2p1_1857F.1_g305480' => 'hma', 'Hma1.2p1_2229F.1_g317550' => 'hma', 'Hma1.2p1_2300F.1_g319260' => 'hma', 'Hma1.2p1_3169F.1_g333565' => 'hma', 'HPP92_012008' => 'vpl', 'HPP92_013850' => 'vpl', 'HPP92_013864' => 'vpl', 'HPP92_025115' => 'vpl', 'HPP92_025116' => 'vpl', 'Lalb_Chr01g0023501' => 'lal', 'Lalb_Chr08g0231371' => 'lal', 'Lalb_Chr11g0075151' => 'lal', 'Lalb_Chr20g0114651' => 'lal', 'Lalb_Chr23g0277161' => 'lal', 'Lj1g0020010' => 'lja', 'Lj1P963T38' => 'lonja', 'Lj2C64T17' => 'lonja', 'Lj2P1095T22' => 'lonja', 'Lj3P944T16' => 'lonja', 'Lj6g0018395' => 'lja', 'LjContig00141g0015376' => 'lja', 'Lsat_1_v5_gn_2_125861' => 'lsa', 'Lsat_1_v5_gn_5_173800' => 'lsa', 'Lsat_1_v5_gn_5_173820' => 'lsa', 'Lsat_1_v5_gn_8_13361' => 'lsa', 'Lsat_1_v5_gn_9_38300' => 'lsa', 'Manes.07G136900' => 'mes', 'Manes.09G113800' => 'mes', 'Manes.10G006800' => 'mes', 'Manes.16G094700' => 'mes', 'Mapoly0023s0147' => 'mpo', 'Mapoly0071s0035' => 'mpo', 'MBI15_g00253_MAGBIO' => 'mbi', 'MBI15_g34612_MAGBIO' => 'mbi', 'MBI15_g41192_MAGBIO' => 'mbi', 'MD01G1160900' => 'mdo', 'MD03G1057800' => 'mdo', 'MD04G1079700' => 'mdo', 'MD04G1168600' => 'mdo', 'MD07G1228900' => 'mdo', 'MD11G1060200' => 'mdo', 'MD12G1182200' => 'mdo', 'Medtr3g031270' => 'mtr', 'Medtr3g072030' => 'mtr', 'Medtr5g074500' => 'mtr', 'Medtr7g071760' => 'mtr', 'Medtr7g071790' => 'mtr', 'Medtr7g071820' => 'mtr', 'Medtr7g071840' => 'mtr', 'Medtr7g071970' => 'mtr', 'MELO3C019983.2' => 'cme', 'MELO3C020492.2' => 'cme', 'MELO3C026039.2' => 'cme', 'Migut.F00613' => 'egut', 'Migut.J00082' => 'egut', 'MSTRG.185' => 'ama', 'MSTRG.27291' => 'ama', 'MSTRG.8360' => 'ama', 'MSTRG.8910' => 'ama', 'Nitab4.5_0000047g0080' => 'nta', 'Nitab4.5_0000263g0030' => 'nta', 'Nitab4.5_0004961g0010' => 'nta', 'Nitab4.5_0009875g0010' => 'nta', 'Nn2g11048' => 'nnu', 'Nn2g13295' => 'nnu', 'Nn2g14169' => 'nnu', 'Oeu017754.1' => 'oeu', 'Oeu034523.1' => 'oeu', 'Oeu038713.1' => 'oeu', 'Os03g0299600' => 'osa', 'Os05g0342000' => 'osa', 'Os05g0342100' => 'osa', 'Os07g0691300' => 'osa', 'Peaxi162Scf00284g00016' => 'pax', 'Peaxi162Scf00304g00214' => 'pax', 'Peaxi162Scf00744g10017' => 'pax', 'PGR031G3984' => 'pgr', 'PGR044G1046' => 'pgr', 'PGR142G0934' => 'pgr', 'PGR142G3506' => 'pgr', 'PGSC0003DMG400006643' => 'stu', 'PGSC0003DMG400017895' => 'stu', 'PGSC0003DMG400026616' => 'stu', 'Phvul.001G247700' => 'pvu', 'Phvul.006G074700' => 'pvu', 'Phvul.008G251001' => 'pvu', 'Phvul.010G061500' => 'pvu', 'Potri.008G075200' => 'ptr', 'Potri.010G182200' => 'ptr', 'Potri.013G153801' => 'ptr', 'Potri.016G129500' => 'ptr', 'Potri.016G129600' => 'ptr', 'Potri.019G125900' => 'ptr', 'Pp3c11_3310' => 'ppa', 'Pp3c12_4310' => 'ppa', 'Pp3c13_21870' => 'ppa', 'Pp3c5_18730' => 'ppa', 'Prupe.2G258900' => 'ppe', 'Prupe.6G046200' => 'ppe', 'Prupe.6G046300' => 'ppe', 'Prupe.6G286900' => 'ppe', 'Psat0s1426g0080' => 'psa', 'Psat0s2636g0040' => 'psa', 'Psat5g152440' => 'psa', 'PSO017G1807' => 'pso', 'PSO135G0469' => 'pso', 'PSO170G1388' => 'pso', 'PSO170G6531' => 'pso', 'PSO339G0613' => 'pso', 'PSO384G2774' => 'pso', 'PSO724G0508' => 'pso', 'QL01p025777' => 'qlo', 'QL01p025785' => 'qlo', 'QL07p033556' => 'qlo', 'QL08p064204' => 'qlo', 'RcHm_v2.0_Chr3g0461091' => 'rch', 'RcHm_v2.0_Chr5g0071881' => 'rch', 'RcHm_v2.0_Chr5g0071891' => 'rch', 'Rhsim03G0149200' => 'rsi', 'Rhsim05G0227200' => 'rsi', 'Rhsim09G0182000' => 'rsi', 'Rhsim13G0062800' => 'rsi', 'Rhsim13G0062900' => 'rsi', 'Sabra08G0055700' => 'sbr', 'Sabra10G0139500' => 'sbr', 'Sabra16G0129100' => 'sbr', 'Sabra19G0123900' => 'sbr', 'Sabra19G0130700' => 'sbr', 'SalBow4G1534' => 'sbo', 'Sc02g0000660' => 'sci', 'Sc11g0005560' => 'sci', 'Sc14g0005570' => 'sci', 'Sed0006255' => 'sed', 'Sed0008318' => 'sed', 'Sed0012456' => 'sed', 'Sed0015931' => 'sed', 'SEGI_03244' => 'sgi', 'SEGI_08396' => 'sgi', 'SEGI_17931' => 'sgi', 'SEGI_21280' => 'sgi', 'SEGI_37092' => 'sgi', 'SEGI_38918' => 'sgi', 'SGA_v2.0_scaffold60G20941' => 'sas', 'SGA_v2.0_scaffold75G25040' => 'sas', 'SMO134G0085' => 'smo', 'SMO367G0022' => 'smo', 'Solyc06g048820.1' => 'sly', 'Solyc06g050760.1' => 'sly', 'Solyc09g014940.3' => 'sly', 'Sopen06g015110' => 'spe', 'Sopen06g016330' => 'spe', 'Sopen09g007900' => 'spe', 'Sp3g09320' => 'spa', 'Sp6g41000' => 'spa', 'TAR623G0164' => 'tar', 'TAR623G1633' => 'tar', 'THA.LOC104816523' => 'tha', 'THA.LOC104826836' => 'tha', 'Thecc.05G004200' => 'tca', 'Thecc.09G359300' => 'tca', 'Thecc.10G008000' => 'tca', 'Thhalv10014882m.g' => 'esa', 'Thhalv10022397m.g' => 'esa', 'TPR.G18665' => 'tpr', 'TPR.G22360' => 'tpr', 'TPR.G25343' => 'tpr', 'TPR.G25680' => 'tpr', 'TPR.G25708' => 'tpr', 'TPR.G28645' => 'tpr', 'TWI09G1182' => 'twi', 'TWI53G1305' => 'twi', 'TWI73G0091' => 'twi', 'TWI74G0143' => 'twi', 'TWI74G0396' => 'twi', 'TWI77G0026' => 'twi', 'TWI77G1013' => 'twi', 'unitig_0.g2178' => 'ugi', 'unitig_0.g254' => 'ugi', 'unitig_62.g23926' => 'ugi', 'unitig_699.g19376' => 'ugi', 'vmacro02907' => 'vma', 'vmacro02908' => 'vma', 'vmacro09988' => 'vma', 'vmacro09989' => 'vma', 'VMungo0331G0593' => 'vmu', 'VMungo0540G2383' => 'vmu', 'VMungo0647G0306' => 'vmu', 'VMungo1383G2639' => 'vmu', 'VMungo1383G3264' => 'vmu', 'Zm00001eb013910' => 'zma', 'Zm00001eb286540' => 'zma', 'Zm00001eb331450' => 'zma', 'Zm00001eb396640' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001699' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001699' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001699' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001699' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001699', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '381', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p36820' => 'bna', 'A05p38250' => 'bna', 'Aa31LG11G6430' => 'aar', 'Aa31LG1G23360' => 'aar', 'Aa31LG3G4140' => 'aar', 'Aa31LG3G4150' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1990' => 'aag', 'Actinidia00982' => 'ach', 'Actinidia11540' => 'ach', 'Actinidia29058' => 'ach', 'Actinidia29737' => 'ach', 'Ah.08g209900' => 'amhyb', 'AL3G22540' => 'aly', 'AL6G10310' => 'aly', 'Aqoxy3G01090' => 'aox', 'Aqoxy4G02177' => 'aox', 'Aqoxy4G02178' => 'aox', 'arahy.Tifrunner.gnm1.ann1.83Q2IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR5SC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHCF7T' => 'arhy', 'AT3G10985' => 'ath', 'AT5G01740' => 'ath', 'ATR0594G157' => 'atr', 'ATR0594G214' => 'atr', 'Atru.chr1.2578' => 'acertr', 'Atru.chr12.128' => 'acertr', 'Atru.chr8.2356' => 'acertr', 'AUR62012326' => 'cqu', 'AUR62022968' => 'cqu', 'BcaB04g18615' => 'bca', 'BcaB04g21161' => 'bca', 'BcaB05g21915' => 'bca', 'BcaB06g25668' => 'bca', 'BcaC01g04150' => 'bca', 'BcaC03g13087' => 'bca', 'BcaC05g29420' => 'bca', 'BcaC09g48144' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00130' => 'bna', 'BolC1t05341H' => 'bol', 'BolC2t06007H' => 'bol', 'BolC3t16722H' => 'bol', 'BolC5t34370H' => 'bol', 'BraA01t04210Z' => 'bra', 'BraA02t04680Z' => 'bra', 'BraA03t12845Z' => 'bra', 'BraA05t22618Z' => 'bra', 'C02p00100' => 'bna', 'C03p44550' => 'bna', 'C05p57070' => 'bna', 'CAN.G1302.5' => 'can', 'CAN.G169.8' => 'can', 'CAN.G510.2' => 'can', 'CANSAT35G1462' => 'cansat', 'CANSAT54G2558' => 'cansat', 'CANSAT56G0407' => 'cansat', 'CARHR085570' => 'chi', 'CARHR212100' => 'chi', 'Carub.0003s1027' => 'cru', 'Carub.0006s0009' => 'cru', 'Ca_05679_v3' => 'car', 'Ca_15016_v3' => 'car', 'Ca_15175_v3' => 'car', 'Ca_26098_v3' => 'car', 'Cc01_g14980' => 'ccan', 'Cc02_g05790' => 'ccan', 'Cc06_g00660' => 'ccan', 'CDE04G0996' => 'cde', 'CDE04G1332' => 'cde', 'CDE05G1552' => 'cde', 'CDE11G0706' => 'cde', 'Cfa011790' => 'cfa', 'Cfa017092' => 'cfa', 'Ciclev10012959m.g' => 'ccl', 'Ciclev10027637m.g' => 'ccl', 'Ciclev10033519m.g' => 'ccl', 'CiPaw.01G303300' => 'cil', 'CiPaw.02G197000' => 'cil', 'CiPaw.09G216700' => 'cil', 'CiPaw.10G161900' => 'cil', 'CiPaw.13G067800' => 'cil', 'CiPaw.13G067900' => 'cil', 'CiPaw.14G029400' => 'cil', 'ClCG03G000150' => 'cla', 'ClCG04G006570' => 'cla', 'ClCG11G005910' => 'cla', 'COL.COLO4_11170' => 'col', 'COL.COLO4_14431' => 'col', 'COL.COLO4_25819' => 'col', 'Cpa.g.sc19.105' => 'cpa', 'Cpa.g.sc2.339' => 'cpa', 'Cpa.g.sc33.104' => 'cpa', 'CsaV3_4G026930' => 'csa', 'CsaV3_6G002080' => 'csa', 'CSS0007613' => 'camsi', 'CSS0007791' => 'camsi', 'CSS0024332' => 'camsi', 'CSS0025635' => 'camsi', 'CSS0026721' => 'camsi', 'CSS0028087' => 'camsi', 'CSS0042067' => 'camsi', 'CSS0044168' => 'camsi', 'DCAR_015353' => 'dca', 'DCAR_018659' => 'dca', 'DCAR_024797' => 'dca', 'DCAR_028555' => 'dca', 'DCAR_030452' => 'dca', 'Dinv21805' => 'din', 'Dinv25288' => 'din', 'Dinv28704' => 'din', 'Dinv35427' => 'din', 'Dinv35428' => 'din', 'Duzib093G1144' => 'dzi', 'Duzib106G1689' => 'dzi', 'Duzib114G0340' => 'dzi', 'Duzib128G1932' => 'dzi', 'ECA238G2138' => 'eca', 'ECA247G0193' => 'eca', 'ECA247G2675' => 'eca', 'ECA248G0408' => 'eca', 'ECA248G0694' => 'eca', 'ECA248G2509' => 'eca', 'EL10Ac2g04303' => 'bvu', 'EL10Ac4g08234' => 'bvu', 'EL10Ac7g17024' => 'bvu', 'EL10Ac9g22503' => 'bvu', 'Eucgr.A00638' => 'egr', 'Eucgr.A00639' => 'egr', 'Eucgr.A00640' => 'egr', 'Eucgr.G03106' => 'egr', 'Eucgr.J00155' => 'egr', 'Eucgr.J01851' => 'egr', 'Eucgr.J01852' => 'egr', 'FAN01G0843' => 'fan', 'FAN02G1050' => 'fan', 'FAN03G1062' => 'fan', 'FAN05G1242' => 'fan', 'FAN05G4591' => 'fan', 'FAN06G4728' => 'fan', 'FAN09G4204' => 'fan', 'FAN10G1602' => 'fan', 'FAN11G0040' => 'fan', 'FAN11G1527' => 'fan', 'FAN14G0220' => 'fan', 'FAN14G3954' => 'fan', 'FAN16G1854' => 'fan', 'FAN16G2129' => 'fan', 'FAN21G1263' => 'fan', 'FAN21G3197' => 'fan', 'FAN25G0308' => 'fan', 'FvH4_3g39910' => 'fve', 'FvH4_3g39920' => 'fve', 'FvH4_6g10320' => 'fve', 'Glyma.03G041300' => 'gma', 'Glyma.09G279600' => 'gma', 'Glyma.11G163100' => 'gma', 'Glyma.11G163200' => 'gma', 'Glyma.11G234300' => 'gma', 'Glyma.14G200500' => 'gma', 'Glyma.18G022700' => 'gma', 'Glyma.18G056400' => 'gma', 'Glyma.18G056500' => 'gma', 'Glyma.18G209500' => 'gma', 'Gohir.A01G230601' => 'ghi', 'Gohir.A06G159701' => 'ghi', 'Gohir.A10G240650' => 'ghi', 'Gohir.A10G240700' => 'ghi', 'Gohir.A13G013600' => 'ghi', 'Gohir.D01G220700' => 'ghi', 'Gohir.D06G165500' => 'ghi', 'Gohir.D10G252900' => 'ghi', 'Gohir.D13G014700' => 'ghi', 'Gorai.002G267300' => 'gra', 'Gorai.010G193000' => 'gra', 'Gorai.011G293200' => 'gra', 'Gorai.013G015900' => 'gra', 'GSVIVG01030243001' => 'vvi', 'HanXRQChr05g0132431' => 'han', 'HanXRQChr08g0222661' => 'han', 'HanXRQChr10g0287951' => 'han', 'HanXRQChr10g0287961' => 'han', 'HanXRQChr14g0458811' => 'han', 'Haze_17311' => 'cav', 'Haze_17317' => 'cav', 'Haze_21107' => 'cav', 'Haze_24427' => 'cav', 'Haze_24428' => 'cav', 'Hma1.2p1_0292F.1_g115680' => 'hma', 'Hma1.2p1_1421F.1_g282420' => 'hma', 'Hma1.2p1_1857F.1_g305480' => 'hma', 'Hma1.2p1_2229F.1_g317550' => 'hma', 'Hma1.2p1_2300F.1_g319260' => 'hma', 'Hma1.2p1_3169F.1_g333565' => 'hma', 'HPP92_012008' => 'vpl', 'HPP92_013850' => 'vpl', 'HPP92_013864' => 'vpl', 'HPP92_025115' => 'vpl', 'HPP92_025116' => 'vpl', 'Lalb_Chr01g0023501' => 'lal', 'Lalb_Chr08g0231371' => 'lal', 'Lalb_Chr11g0075151' => 'lal', 'Lalb_Chr20g0114651' => 'lal', 'Lalb_Chr23g0277161' => 'lal', 'Lj1g0020010' => 'lja', 'Lj1P963T38' => 'lonja', 'Lj2C64T17' => 'lonja', 'Lj2P1095T22' => 'lonja', 'Lj3P944T16' => 'lonja', 'Lj6g0018395' => 'lja', 'LjContig00141g0015376' => 'lja', 'Lsat_1_v5_gn_2_125861' => 'lsa', 'Lsat_1_v5_gn_5_173800' => 'lsa', 'Lsat_1_v5_gn_5_173820' => 'lsa', 'Lsat_1_v5_gn_8_13361' => 'lsa', 'Lsat_1_v5_gn_9_38300' => 'lsa', 'Manes.07G136900' => 'mes', 'Manes.09G113800' => 'mes', 'Manes.10G006800' => 'mes', 'Manes.16G094700' => 'mes', 'Mapoly0023s0147' => 'mpo', 'Mapoly0071s0035' => 'mpo', 'MBI15_g00253_MAGBIO' => 'mbi', 'MBI15_g34612_MAGBIO' => 'mbi', 'MBI15_g41192_MAGBIO' => 'mbi', 'MD01G1160900' => 'mdo', 'MD03G1057800' => 'mdo', 'MD04G1079700' => 'mdo', 'MD04G1168600' => 'mdo', 'MD07G1228900' => 'mdo', 'MD11G1060200' => 'mdo', 'MD12G1182200' => 'mdo', 'Medtr3g031270' => 'mtr', 'Medtr3g072030' => 'mtr', 'Medtr5g074500' => 'mtr', 'Medtr7g071760' => 'mtr', 'Medtr7g071790' => 'mtr', 'Medtr7g071820' => 'mtr', 'Medtr7g071840' => 'mtr', 'Medtr7g071970' => 'mtr', 'MELO3C019983.2' => 'cme', 'MELO3C020492.2' => 'cme', 'MELO3C026039.2' => 'cme', 'Migut.F00613' => 'egut', 'Migut.J00082' => 'egut', 'MSTRG.185' => 'ama', 'MSTRG.27291' => 'ama', 'MSTRG.8360' => 'ama', 'MSTRG.8910' => 'ama', 'Nitab4.5_0000047g0080' => 'nta', 'Nitab4.5_0000263g0030' => 'nta', 'Nitab4.5_0004961g0010' => 'nta', 'Nitab4.5_0009875g0010' => 'nta', 'Nn2g11048' => 'nnu', 'Nn2g13295' => 'nnu', 'Nn2g14169' => 'nnu', 'Oeu017754.1' => 'oeu', 'Oeu034523.1' => 'oeu', 'Oeu038713.1' => 'oeu', 'Os03g0299600' => 'osa', 'Os05g0342000' => 'osa', 'Os05g0342100' => 'osa', 'Os07g0691300' => 'osa', 'Peaxi162Scf00284g00016' => 'pax', 'Peaxi162Scf00304g00214' => 'pax', 'Peaxi162Scf00744g10017' => 'pax', 'PGR031G3984' => 'pgr', 'PGR044G1046' => 'pgr', 'PGR142G0934' => 'pgr', 'PGR142G3506' => 'pgr', 'PGSC0003DMG400006643' => 'stu', 'PGSC0003DMG400017895' => 'stu', 'PGSC0003DMG400026616' => 'stu', 'Phvul.001G247700' => 'pvu', 'Phvul.006G074700' => 'pvu', 'Phvul.008G251001' => 'pvu', 'Phvul.010G061500' => 'pvu', 'Potri.008G075200' => 'ptr', 'Potri.010G182200' => 'ptr', 'Potri.013G153801' => 'ptr', 'Potri.016G129500' => 'ptr', 'Potri.016G129600' => 'ptr', 'Potri.019G125900' => 'ptr', 'Pp3c11_3310' => 'ppa', 'Pp3c12_4310' => 'ppa', 'Pp3c13_21870' => 'ppa', 'Pp3c5_18730' => 'ppa', 'Prupe.2G258900' => 'ppe', 'Prupe.6G046200' => 'ppe', 'Prupe.6G046300' => 'ppe', 'Prupe.6G286900' => 'ppe', 'Psat0s1426g0080' => 'psa', 'Psat0s2636g0040' => 'psa', 'Psat5g152440' => 'psa', 'PSO017G1807' => 'pso', 'PSO135G0469' => 'pso', 'PSO170G1388' => 'pso', 'PSO170G6531' => 'pso', 'PSO339G0613' => 'pso', 'PSO384G2774' => 'pso', 'PSO724G0508' => 'pso', 'QL01p025777' => 'qlo', 'QL01p025785' => 'qlo', 'QL07p033556' => 'qlo', 'QL08p064204' => 'qlo', 'RcHm_v2.0_Chr3g0461091' => 'rch', 'RcHm_v2.0_Chr5g0071881' => 'rch', 'RcHm_v2.0_Chr5g0071891' => 'rch', 'Rhsim03G0149200' => 'rsi', 'Rhsim05G0227200' => 'rsi', 'Rhsim09G0182000' => 'rsi', 'Rhsim13G0062800' => 'rsi', 'Rhsim13G0062900' => 'rsi', 'Sabra08G0055700' => 'sbr', 'Sabra10G0139500' => 'sbr', 'Sabra16G0129100' => 'sbr', 'Sabra19G0123900' => 'sbr', 'Sabra19G0130700' => 'sbr', 'SalBow4G1534' => 'sbo', 'Sc02g0000660' => 'sci', 'Sc11g0005560' => 'sci', 'Sc14g0005570' => 'sci', 'Sed0006255' => 'sed', 'Sed0008318' => 'sed', 'Sed0012456' => 'sed', 'Sed0015931' => 'sed', 'SEGI_03244' => 'sgi', 'SEGI_08396' => 'sgi', 'SEGI_17931' => 'sgi', 'SEGI_21280' => 'sgi', 'SEGI_37092' => 'sgi', 'SEGI_38918' => 'sgi', 'SGA_v2.0_scaffold60G20941' => 'sas', 'SGA_v2.0_scaffold75G25040' => 'sas', 'SMO134G0085' => 'smo', 'SMO367G0022' => 'smo', 'Solyc06g048820.1' => 'sly', 'Solyc06g050760.1' => 'sly', 'Solyc09g014940.3' => 'sly', 'Sopen06g015110' => 'spe', 'Sopen06g016330' => 'spe', 'Sopen09g007900' => 'spe', 'Sp3g09320' => 'spa', 'Sp6g41000' => 'spa', 'TAR623G0164' => 'tar', 'TAR623G1633' => 'tar', 'THA.LOC104816523' => 'tha', 'THA.LOC104826836' => 'tha', 'Thecc.05G004200' => 'tca', 'Thecc.09G359300' => 'tca', 'Thecc.10G008000' => 'tca', 'Thhalv10014882m.g' => 'esa', 'Thhalv10022397m.g' => 'esa', 'TPR.G18665' => 'tpr', 'TPR.G22360' => 'tpr', 'TPR.G25343' => 'tpr', 'TPR.G25680' => 'tpr', 'TPR.G25708' => 'tpr', 'TPR.G28645' => 'tpr', 'TWI09G1182' => 'twi', 'TWI53G1305' => 'twi', 'TWI73G0091' => 'twi', 'TWI74G0143' => 'twi', 'TWI74G0396' => 'twi', 'TWI77G0026' => 'twi', 'TWI77G1013' => 'twi', 'unitig_0.g2178' => 'ugi', 'unitig_0.g254' => 'ugi', 'unitig_62.g23926' => 'ugi', 'unitig_699.g19376' => 'ugi', 'vmacro02907' => 'vma', 'vmacro02908' => 'vma', 'vmacro09988' => 'vma', 'vmacro09989' => 'vma', 'VMungo0331G0593' => 'vmu', 'VMungo0540G2383' => 'vmu', 'VMungo0647G0306' => 'vmu', 'VMungo1383G2639' => 'vmu', 'VMungo1383G3264' => 'vmu', 'Zm00001eb013910' => 'zma', 'Zm00001eb286540' => 'zma', 'Zm00001eb331450' => 'zma', 'Zm00001eb396640' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001699', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001699' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001699', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '381', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001699' ) ), 'genes' => array( 'A03p36820' => 'bna', 'A05p38250' => 'bna', 'Aa31LG11G6430' => 'aar', 'Aa31LG1G23360' => 'aar', 'Aa31LG3G4140' => 'aar', 'Aa31LG3G4150' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1990' => 'aag', 'Actinidia00982' => 'ach', 'Actinidia11540' => 'ach', 'Actinidia29058' => 'ach', 'Actinidia29737' => 'ach', 'Ah.08g209900' => 'amhyb', 'AL3G22540' => 'aly', 'AL6G10310' => 'aly', 'Aqoxy3G01090' => 'aox', 'Aqoxy4G02177' => 'aox', 'Aqoxy4G02178' => 'aox', 'arahy.Tifrunner.gnm1.ann1.83Q2IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR5SC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHCF7T' => 'arhy', 'AT3G10985' => 'ath', 'AT5G01740' => 'ath', 'ATR0594G157' => 'atr', 'ATR0594G214' => 'atr', 'Atru.chr1.2578' => 'acertr', 'Atru.chr12.128' => 'acertr', 'Atru.chr8.2356' => 'acertr', 'AUR62012326' => 'cqu', 'AUR62022968' => 'cqu', 'BcaB04g18615' => 'bca', 'BcaB04g21161' => 'bca', 'BcaB05g21915' => 'bca', 'BcaB06g25668' => 'bca', 'BcaC01g04150' => 'bca', 'BcaC03g13087' => 'bca', 'BcaC05g29420' => 'bca', 'BcaC09g48144' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00130' => 'bna', 'BolC1t05341H' => 'bol', 'BolC2t06007H' => 'bol', 'BolC3t16722H' => 'bol', 'BolC5t34370H' => 'bol', 'BraA01t04210Z' => 'bra', 'BraA02t04680Z' => 'bra', 'BraA03t12845Z' => 'bra', 'BraA05t22618Z' => 'bra', 'C02p00100' => 'bna', 'C03p44550' => 'bna', 'C05p57070' => 'bna', 'CAN.G1302.5' => 'can', 'CAN.G169.8' => 'can', 'CAN.G510.2' => 'can', 'CANSAT35G1462' => 'cansat', 'CANSAT54G2558' => 'cansat', 'CANSAT56G0407' => 'cansat', 'CARHR085570' => 'chi', 'CARHR212100' => 'chi', 'Carub.0003s1027' => 'cru', 'Carub.0006s0009' => 'cru', 'Ca_05679_v3' => 'car', 'Ca_15016_v3' => 'car', 'Ca_15175_v3' => 'car', 'Ca_26098_v3' => 'car', 'Cc01_g14980' => 'ccan', 'Cc02_g05790' => 'ccan', 'Cc06_g00660' => 'ccan', 'CDE04G0996' => 'cde', 'CDE04G1332' => 'cde', 'CDE05G1552' => 'cde', 'CDE11G0706' => 'cde', 'Cfa011790' => 'cfa', 'Cfa017092' => 'cfa', 'Ciclev10012959m.g' => 'ccl', 'Ciclev10027637m.g' => 'ccl', 'Ciclev10033519m.g' => 'ccl', 'CiPaw.01G303300' => 'cil', 'CiPaw.02G197000' => 'cil', 'CiPaw.09G216700' => 'cil', 'CiPaw.10G161900' => 'cil', 'CiPaw.13G067800' => 'cil', 'CiPaw.13G067900' => 'cil', 'CiPaw.14G029400' => 'cil', 'ClCG03G000150' => 'cla', 'ClCG04G006570' => 'cla', 'ClCG11G005910' => 'cla', 'COL.COLO4_11170' => 'col', 'COL.COLO4_14431' => 'col', 'COL.COLO4_25819' => 'col', 'Cpa.g.sc19.105' => 'cpa', 'Cpa.g.sc2.339' => 'cpa', 'Cpa.g.sc33.104' => 'cpa', 'CsaV3_4G026930' => 'csa', 'CsaV3_6G002080' => 'csa', 'CSS0007613' => 'camsi', 'CSS0007791' => 'camsi', 'CSS0024332' => 'camsi', 'CSS0025635' => 'camsi', 'CSS0026721' => 'camsi', 'CSS0028087' => 'camsi', 'CSS0042067' => 'camsi', 'CSS0044168' => 'camsi', 'DCAR_015353' => 'dca', 'DCAR_018659' => 'dca', 'DCAR_024797' => 'dca', 'DCAR_028555' => 'dca', 'DCAR_030452' => 'dca', 'Dinv21805' => 'din', 'Dinv25288' => 'din', 'Dinv28704' => 'din', 'Dinv35427' => 'din', 'Dinv35428' => 'din', 'Duzib093G1144' => 'dzi', 'Duzib106G1689' => 'dzi', 'Duzib114G0340' => 'dzi', 'Duzib128G1932' => 'dzi', 'ECA238G2138' => 'eca', 'ECA247G0193' => 'eca', 'ECA247G2675' => 'eca', 'ECA248G0408' => 'eca', 'ECA248G0694' => 'eca', 'ECA248G2509' => 'eca', 'EL10Ac2g04303' => 'bvu', 'EL10Ac4g08234' => 'bvu', 'EL10Ac7g17024' => 'bvu', 'EL10Ac9g22503' => 'bvu', 'Eucgr.A00638' => 'egr', 'Eucgr.A00639' => 'egr', 'Eucgr.A00640' => 'egr', 'Eucgr.G03106' => 'egr', 'Eucgr.J00155' => 'egr', 'Eucgr.J01851' => 'egr', 'Eucgr.J01852' => 'egr', 'FAN01G0843' => 'fan', 'FAN02G1050' => 'fan', 'FAN03G1062' => 'fan', 'FAN05G1242' => 'fan', 'FAN05G4591' => 'fan', 'FAN06G4728' => 'fan', 'FAN09G4204' => 'fan', 'FAN10G1602' => 'fan', 'FAN11G0040' => 'fan', 'FAN11G1527' => 'fan', 'FAN14G0220' => 'fan', 'FAN14G3954' => 'fan', 'FAN16G1854' => 'fan', 'FAN16G2129' => 'fan', 'FAN21G1263' => 'fan', 'FAN21G3197' => 'fan', 'FAN25G0308' => 'fan', 'FvH4_3g39910' => 'fve', 'FvH4_3g39920' => 'fve', 'FvH4_6g10320' => 'fve', 'Glyma.03G041300' => 'gma', 'Glyma.09G279600' => 'gma', 'Glyma.11G163100' => 'gma', 'Glyma.11G163200' => 'gma', 'Glyma.11G234300' => 'gma', 'Glyma.14G200500' => 'gma', 'Glyma.18G022700' => 'gma', 'Glyma.18G056400' => 'gma', 'Glyma.18G056500' => 'gma', 'Glyma.18G209500' => 'gma', 'Gohir.A01G230601' => 'ghi', 'Gohir.A06G159701' => 'ghi', 'Gohir.A10G240650' => 'ghi', 'Gohir.A10G240700' => 'ghi', 'Gohir.A13G013600' => 'ghi', 'Gohir.D01G220700' => 'ghi', 'Gohir.D06G165500' => 'ghi', 'Gohir.D10G252900' => 'ghi', 'Gohir.D13G014700' => 'ghi', 'Gorai.002G267300' => 'gra', 'Gorai.010G193000' => 'gra', 'Gorai.011G293200' => 'gra', 'Gorai.013G015900' => 'gra', 'GSVIVG01030243001' => 'vvi', 'HanXRQChr05g0132431' => 'han', 'HanXRQChr08g0222661' => 'han', 'HanXRQChr10g0287951' => 'han', 'HanXRQChr10g0287961' => 'han', 'HanXRQChr14g0458811' => 'han', 'Haze_17311' => 'cav', 'Haze_17317' => 'cav', 'Haze_21107' => 'cav', 'Haze_24427' => 'cav', 'Haze_24428' => 'cav', 'Hma1.2p1_0292F.1_g115680' => 'hma', 'Hma1.2p1_1421F.1_g282420' => 'hma', 'Hma1.2p1_1857F.1_g305480' => 'hma', 'Hma1.2p1_2229F.1_g317550' => 'hma', 'Hma1.2p1_2300F.1_g319260' => 'hma', 'Hma1.2p1_3169F.1_g333565' => 'hma', 'HPP92_012008' => 'vpl', 'HPP92_013850' => 'vpl', 'HPP92_013864' => 'vpl', 'HPP92_025115' => 'vpl', 'HPP92_025116' => 'vpl', 'Lalb_Chr01g0023501' => 'lal', 'Lalb_Chr08g0231371' => 'lal', 'Lalb_Chr11g0075151' => 'lal', 'Lalb_Chr20g0114651' => 'lal', 'Lalb_Chr23g0277161' => 'lal', 'Lj1g0020010' => 'lja', 'Lj1P963T38' => 'lonja', 'Lj2C64T17' => 'lonja', 'Lj2P1095T22' => 'lonja', 'Lj3P944T16' => 'lonja', 'Lj6g0018395' => 'lja', 'LjContig00141g0015376' => 'lja', 'Lsat_1_v5_gn_2_125861' => 'lsa', 'Lsat_1_v5_gn_5_173800' => 'lsa', 'Lsat_1_v5_gn_5_173820' => 'lsa', 'Lsat_1_v5_gn_8_13361' => 'lsa', 'Lsat_1_v5_gn_9_38300' => 'lsa', 'Manes.07G136900' => 'mes', 'Manes.09G113800' => 'mes', 'Manes.10G006800' => 'mes', 'Manes.16G094700' => 'mes', 'Mapoly0023s0147' => 'mpo', 'Mapoly0071s0035' => 'mpo', 'MBI15_g00253_MAGBIO' => 'mbi', 'MBI15_g34612_MAGBIO' => 'mbi', 'MBI15_g41192_MAGBIO' => 'mbi', 'MD01G1160900' => 'mdo', 'MD03G1057800' => 'mdo', 'MD04G1079700' => 'mdo', 'MD04G1168600' => 'mdo', 'MD07G1228900' => 'mdo', 'MD11G1060200' => 'mdo', 'MD12G1182200' => 'mdo', 'Medtr3g031270' => 'mtr', 'Medtr3g072030' => 'mtr', 'Medtr5g074500' => 'mtr', 'Medtr7g071760' => 'mtr', 'Medtr7g071790' => 'mtr', 'Medtr7g071820' => 'mtr', 'Medtr7g071840' => 'mtr', 'Medtr7g071970' => 'mtr', 'MELO3C019983.2' => 'cme', 'MELO3C020492.2' => 'cme', 'MELO3C026039.2' => 'cme', 'Migut.F00613' => 'egut', 'Migut.J00082' => 'egut', 'MSTRG.185' => 'ama', 'MSTRG.27291' => 'ama', 'MSTRG.8360' => 'ama', 'MSTRG.8910' => 'ama', 'Nitab4.5_0000047g0080' => 'nta', 'Nitab4.5_0000263g0030' => 'nta', 'Nitab4.5_0004961g0010' => 'nta', 'Nitab4.5_0009875g0010' => 'nta', 'Nn2g11048' => 'nnu', 'Nn2g13295' => 'nnu', 'Nn2g14169' => 'nnu', 'Oeu017754.1' => 'oeu', 'Oeu034523.1' => 'oeu', 'Oeu038713.1' => 'oeu', 'Os03g0299600' => 'osa', 'Os05g0342000' => 'osa', 'Os05g0342100' => 'osa', 'Os07g0691300' => 'osa', 'Peaxi162Scf00284g00016' => 'pax', 'Peaxi162Scf00304g00214' => 'pax', 'Peaxi162Scf00744g10017' => 'pax', 'PGR031G3984' => 'pgr', 'PGR044G1046' => 'pgr', 'PGR142G0934' => 'pgr', 'PGR142G3506' => 'pgr', 'PGSC0003DMG400006643' => 'stu', 'PGSC0003DMG400017895' => 'stu', 'PGSC0003DMG400026616' => 'stu', 'Phvul.001G247700' => 'pvu', 'Phvul.006G074700' => 'pvu', 'Phvul.008G251001' => 'pvu', 'Phvul.010G061500' => 'pvu', 'Potri.008G075200' => 'ptr', 'Potri.010G182200' => 'ptr', 'Potri.013G153801' => 'ptr', 'Potri.016G129500' => 'ptr', 'Potri.016G129600' => 'ptr', 'Potri.019G125900' => 'ptr', 'Pp3c11_3310' => 'ppa', 'Pp3c12_4310' => 'ppa', 'Pp3c13_21870' => 'ppa', 'Pp3c5_18730' => 'ppa', 'Prupe.2G258900' => 'ppe', 'Prupe.6G046200' => 'ppe', 'Prupe.6G046300' => 'ppe', 'Prupe.6G286900' => 'ppe', 'Psat0s1426g0080' => 'psa', 'Psat0s2636g0040' => 'psa', 'Psat5g152440' => 'psa', 'PSO017G1807' => 'pso', 'PSO135G0469' => 'pso', 'PSO170G1388' => 'pso', 'PSO170G6531' => 'pso', 'PSO339G0613' => 'pso', 'PSO384G2774' => 'pso', 'PSO724G0508' => 'pso', 'QL01p025777' => 'qlo', 'QL01p025785' => 'qlo', 'QL07p033556' => 'qlo', 'QL08p064204' => 'qlo', 'RcHm_v2.0_Chr3g0461091' => 'rch', 'RcHm_v2.0_Chr5g0071881' => 'rch', 'RcHm_v2.0_Chr5g0071891' => 'rch', 'Rhsim03G0149200' => 'rsi', 'Rhsim05G0227200' => 'rsi', 'Rhsim09G0182000' => 'rsi', 'Rhsim13G0062800' => 'rsi', 'Rhsim13G0062900' => 'rsi', 'Sabra08G0055700' => 'sbr', 'Sabra10G0139500' => 'sbr', 'Sabra16G0129100' => 'sbr', 'Sabra19G0123900' => 'sbr', 'Sabra19G0130700' => 'sbr', 'SalBow4G1534' => 'sbo', 'Sc02g0000660' => 'sci', 'Sc11g0005560' => 'sci', 'Sc14g0005570' => 'sci', 'Sed0006255' => 'sed', 'Sed0008318' => 'sed', 'Sed0012456' => 'sed', 'Sed0015931' => 'sed', 'SEGI_03244' => 'sgi', 'SEGI_08396' => 'sgi', 'SEGI_17931' => 'sgi', 'SEGI_21280' => 'sgi', 'SEGI_37092' => 'sgi', 'SEGI_38918' => 'sgi', 'SGA_v2.0_scaffold60G20941' => 'sas', 'SGA_v2.0_scaffold75G25040' => 'sas', 'SMO134G0085' => 'smo', 'SMO367G0022' => 'smo', 'Solyc06g048820.1' => 'sly', 'Solyc06g050760.1' => 'sly', 'Solyc09g014940.3' => 'sly', 'Sopen06g015110' => 'spe', 'Sopen06g016330' => 'spe', 'Sopen09g007900' => 'spe', 'Sp3g09320' => 'spa', 'Sp6g41000' => 'spa', 'TAR623G0164' => 'tar', 'TAR623G1633' => 'tar', 'THA.LOC104816523' => 'tha', 'THA.LOC104826836' => 'tha', 'Thecc.05G004200' => 'tca', 'Thecc.09G359300' => 'tca', 'Thecc.10G008000' => 'tca', 'Thhalv10014882m.g' => 'esa', 'Thhalv10022397m.g' => 'esa', 'TPR.G18665' => 'tpr', 'TPR.G22360' => 'tpr', 'TPR.G25343' => 'tpr', 'TPR.G25680' => 'tpr', 'TPR.G25708' => 'tpr', 'TPR.G28645' => 'tpr', 'TWI09G1182' => 'twi', 'TWI53G1305' => 'twi', 'TWI73G0091' => 'twi', 'TWI74G0143' => 'twi', 'TWI74G0396' => 'twi', 'TWI77G0026' => 'twi', 'TWI77G1013' => 'twi', 'unitig_0.g2178' => 'ugi', 'unitig_0.g254' => 'ugi', 'unitig_62.g23926' => 'ugi', 'unitig_699.g19376' => 'ugi', 'vmacro02907' => 'vma', 'vmacro02908' => 'vma', 'vmacro09988' => 'vma', 'vmacro09989' => 'vma', 'VMungo0331G0593' => 'vmu', 'VMungo0540G2383' => 'vmu', 'VMungo0647G0306' => 'vmu', 'VMungo1383G2639' => 'vmu', 'VMungo1383G3264' => 'vmu', 'Zm00001eb013910' => 'zma', 'Zm00001eb286540' => 'zma', 'Zm00001eb331450' => 'zma', 'Zm00001eb396640' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001699' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001699' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001699' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001699' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151