Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p36820 Brassica napus
A05p38250 Brassica napus
Aa31LG11G6430 Aethionema arabicum
Aa31LG1G23360 Aethionema arabicum
Aa31LG3G4140 Aethionema arabicum
Aa31LG3G4150 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1990 Anthoceros agrestis
Actinidia00982 Actinidia chinensis
Actinidia11540 Actinidia chinensis
Actinidia29058 Actinidia chinensis
Actinidia29737 Actinidia chinensis
Ah.08g209900 Amaranthus hybridus
AL3G22540 Arabidopsis lyrata
AL6G10310 Arabidopsis lyrata
Aqoxy3G01090 Aquilegia oxysepala
Aqoxy4G02177 Aquilegia oxysepala
Aqoxy4G02178 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.83Q2IT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IR5SC0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RHCF7T Arachis hypogaea
AT3G10985 Arabidopsis thaliana
AT5G01740 Arabidopsis thaliana
ATR0594G157 Amborella trichopoda
ATR0594G214 Amborella trichopoda
Atru.chr1.2578 Acer truncatum
Atru.chr12.128 Acer truncatum
Atru.chr8.2356 Acer truncatum
AUR62012326 Chenopodium quinoa
AUR62022968 Chenopodium quinoa
BcaB04g18615 Brassica carinata
BcaB04g21161 Brassica carinata
BcaB05g21915 Brassica carinata
BcaB06g25668 Brassica carinata
BcaC01g04150 Brassica carinata
BcaC03g13087 Brassica carinata
BcaC05g29420 Brassica carinata
BcaC09g48144 Brassica carinata
BNapus_Darmor_BZH_scaffold_273p00130 Brassica napus
BolC1t05341H Brassica oleracea
BolC2t06007H Brassica oleracea
BolC3t16722H Brassica oleracea
BolC5t34370H Brassica oleracea
BraA01t04210Z Brassica rapa
BraA02t04680Z Brassica rapa
BraA03t12845Z Brassica rapa
BraA05t22618Z Brassica rapa
C02p00100 Brassica napus
C03p44550 Brassica napus
C05p57070 Brassica napus
CAN.G1302.5 Capsicum annuum
CAN.G169.8 Capsicum annuum
CAN.G510.2 Capsicum annuum
CANSAT35G1462 Cannabis sativa
CANSAT54G2558 Cannabis sativa
CANSAT56G0407 Cannabis sativa
CARHR085570 Cardamine hirsuta
CARHR212100 Cardamine hirsuta
Carub.0003s1027 Capsella rubella
Carub.0006s0009 Capsella rubella
Ca_05679_v3 Cicer arietinum L.
Ca_15016_v3 Cicer arietinum L.
Ca_15175_v3 Cicer arietinum L.
Ca_26098_v3 Cicer arietinum L.
Cc01_g14980 Coffea canephora
Cc02_g05790 Coffea canephora
Cc06_g00660 Coffea canephora
CDE04G0996 Ceratophyllum demersum
CDE04G1332 Ceratophyllum demersum
CDE05G1552 Ceratophyllum demersum
CDE11G0706 Ceratophyllum demersum
Cfa011790 Carpinus fangiana
Cfa017092 Carpinus fangiana
Ciclev10012959m.g Citrus clementina
Ciclev10027637m.g Citrus clementina
Ciclev10033519m.g Citrus clementina
CiPaw.01G303300 Carya illinoinensis
CiPaw.02G197000 Carya illinoinensis
CiPaw.09G216700 Carya illinoinensis
CiPaw.10G161900 Carya illinoinensis
CiPaw.13G067800 Carya illinoinensis
CiPaw.13G067900 Carya illinoinensis
CiPaw.14G029400 Carya illinoinensis
ClCG03G000150 Citrullus lanatus
ClCG04G006570 Citrullus lanatus
ClCG11G005910 Citrullus lanatus
COL.COLO4_11170 Corchorus olitorius
COL.COLO4_14431 Corchorus olitorius
COL.COLO4_25819 Corchorus olitorius
Cpa.g.sc19.105 Carica papaya
Cpa.g.sc2.339 Carica papaya
Cpa.g.sc33.104 Carica papaya
CsaV3_4G026930 Cucumis sativus L.
CsaV3_6G002080 Cucumis sativus L.
CSS0007613 Camellia sinensis var. sinensis
CSS0007791 Camellia sinensis var. sinensis
CSS0024332 Camellia sinensis var. sinensis
CSS0025635 Camellia sinensis var. sinensis
CSS0026721 Camellia sinensis var. sinensis
CSS0028087 Camellia sinensis var. sinensis
CSS0042067 Camellia sinensis var. sinensis
CSS0044168 Camellia sinensis var. sinensis
DCAR_015353 Daucus carota
DCAR_018659 Daucus carota
DCAR_024797 Daucus carota
DCAR_028555 Daucus carota
DCAR_030452 Daucus carota
Dinv21805 Davidia involucrata
Dinv25288 Davidia involucrata
Dinv28704 Davidia involucrata
Dinv35427 Davidia involucrata
Dinv35428 Davidia involucrata
Duzib093G1144 Durio zibethinus
Duzib106G1689 Durio zibethinus
Duzib114G0340 Durio zibethinus
Duzib128G1932 Durio zibethinus
ECA238G2138 Erigeron canadensis
ECA247G0193 Erigeron canadensis
ECA247G2675 Erigeron canadensis
ECA248G0408 Erigeron canadensis
ECA248G0694 Erigeron canadensis
ECA248G2509 Erigeron canadensis
EL10Ac2g04303 Beta vulgaris
EL10Ac4g08234 Beta vulgaris
EL10Ac7g17024 Beta vulgaris
EL10Ac9g22503 Beta vulgaris
Eucgr.A00638 Eucalyptus grandis
Eucgr.A00639 Eucalyptus grandis
Eucgr.A00640 Eucalyptus grandis
Eucgr.G03106 Eucalyptus grandis
Eucgr.J00155 Eucalyptus grandis
Eucgr.J01851 Eucalyptus grandis
Eucgr.J01852 Eucalyptus grandis
FAN01G0843 Fragaria x ananassa
FAN02G1050 Fragaria x ananassa
FAN03G1062 Fragaria x ananassa
FAN05G1242 Fragaria x ananassa
FAN05G4591 Fragaria x ananassa
FAN06G4728 Fragaria x ananassa
FAN09G4204 Fragaria x ananassa
FAN10G1602 Fragaria x ananassa
FAN11G0040 Fragaria x ananassa
FAN11G1527 Fragaria x ananassa
FAN14G0220 Fragaria x ananassa
FAN14G3954 Fragaria x ananassa
FAN16G1854 Fragaria x ananassa
FAN16G2129 Fragaria x ananassa
FAN21G1263 Fragaria x ananassa
FAN21G3197 Fragaria x ananassa
FAN25G0308 Fragaria x ananassa
FvH4_3g39910 Fragaria vesca
FvH4_3g39920 Fragaria vesca
FvH4_6g10320 Fragaria vesca
Glyma.03G041300 Glycine max
Glyma.09G279600 Glycine max
Glyma.11G163100 Glycine max
Glyma.11G163200 Glycine max
Glyma.11G234300 Glycine max
Glyma.14G200500 Glycine max
Glyma.18G022700 Glycine max
Glyma.18G056400 Glycine max
Glyma.18G056500 Glycine max
Glyma.18G209500 Glycine max
Gohir.A01G230601 Gossypium hirsutum
Gohir.A06G159701 Gossypium hirsutum
Gohir.A10G240650 Gossypium hirsutum
Gohir.A10G240700 Gossypium hirsutum
Gohir.A13G013600 Gossypium hirsutum
Gohir.D01G220700 Gossypium hirsutum
Gohir.D06G165500 Gossypium hirsutum
Gohir.D10G252900 Gossypium hirsutum
Gohir.D13G014700 Gossypium hirsutum
Gorai.002G267300 Gossypium raimondii
Gorai.010G193000 Gossypium raimondii
Gorai.011G293200 Gossypium raimondii
Gorai.013G015900 Gossypium raimondii
GSVIVG01030243001 Vitis vinifera
HanXRQChr05g0132431 Helianthus annuus
HanXRQChr08g0222661 Helianthus annuus
HanXRQChr10g0287951 Helianthus annuus
HanXRQChr10g0287961 Helianthus annuus
HanXRQChr14g0458811 Helianthus annuus
Haze_17311 Corylus avellana
Haze_17317 Corylus avellana
Haze_21107 Corylus avellana
Haze_24427 Corylus avellana
Haze_24428 Corylus avellana
Hma1.2p1_0292F.1_g115680 Hydrangea macrophylla
Hma1.2p1_1421F.1_g282420 Hydrangea macrophylla
Hma1.2p1_1857F.1_g305480 Hydrangea macrophylla
Hma1.2p1_2229F.1_g317550 Hydrangea macrophylla
Hma1.2p1_2300F.1_g319260 Hydrangea macrophylla
Hma1.2p1_3169F.1_g333565 Hydrangea macrophylla
HPP92_012008 Vanilla planifolia
HPP92_013850 Vanilla planifolia
HPP92_013864 Vanilla planifolia
HPP92_025115 Vanilla planifolia
HPP92_025116 Vanilla planifolia
Lalb_Chr01g0023501 Lupinus albus
Lalb_Chr08g0231371 Lupinus albus
Lalb_Chr11g0075151 Lupinus albus
Lalb_Chr20g0114651 Lupinus albus
Lalb_Chr23g0277161 Lupinus albus
Lj1g0020010 Lotus japonicus
Lj1P963T38 Lonicera japonica
Lj2C64T17 Lonicera japonica
Lj2P1095T22 Lonicera japonica
Lj3P944T16 Lonicera japonica
Lj6g0018395 Lotus japonicus
LjContig00141g0015376 Lotus japonicus
Lsat_1_v5_gn_2_125861 Lactuca sativa
Lsat_1_v5_gn_5_173800 Lactuca sativa
Lsat_1_v5_gn_5_173820 Lactuca sativa
Lsat_1_v5_gn_8_13361 Lactuca sativa
Lsat_1_v5_gn_9_38300 Lactuca sativa
Manes.07G136900 Manihot esculenta
Manes.09G113800 Manihot esculenta
Manes.10G006800 Manihot esculenta
Manes.16G094700 Manihot esculenta
Mapoly0023s0147 Marchantia polymorpha
Mapoly0071s0035 Marchantia polymorpha
MBI15_g00253_MAGBIO Magnolia biondii
MBI15_g34612_MAGBIO Magnolia biondii
MBI15_g41192_MAGBIO Magnolia biondii
MD01G1160900 Malus domestica
MD03G1057800 Malus domestica
MD04G1079700 Malus domestica
MD04G1168600 Malus domestica
MD07G1228900 Malus domestica
MD11G1060200 Malus domestica
MD12G1182200 Malus domestica
Medtr3g031270 Medicago truncatula
Medtr3g072030 Medicago truncatula
Medtr5g074500 Medicago truncatula
Medtr7g071760 Medicago truncatula
Medtr7g071790 Medicago truncatula
Medtr7g071820 Medicago truncatula
Medtr7g071840 Medicago truncatula
Medtr7g071970 Medicago truncatula
MELO3C019983.2 Cucumis melo
MELO3C020492.2 Cucumis melo
MELO3C026039.2 Cucumis melo
Migut.F00613 Erythranthe guttata
Migut.J00082 Erythranthe guttata
MSTRG.185 Avicennia marina
MSTRG.27291 Avicennia marina
MSTRG.8360 Avicennia marina
MSTRG.8910 Avicennia marina
Nitab4.5_0000047g0080 Nicotiana tabacum
Nitab4.5_0000263g0030 Nicotiana tabacum
Nitab4.5_0004961g0010 Nicotiana tabacum
Nitab4.5_0009875g0010 Nicotiana tabacum
Nn2g11048 Nelumbo nucifera
Nn2g13295 Nelumbo nucifera
Nn2g14169 Nelumbo nucifera
Oeu017754.1 Olea europaea
Oeu034523.1 Olea europaea
Oeu038713.1 Olea europaea
Os03g0299600 Oryza sativa ssp. japonica
Os05g0342000 Oryza sativa ssp. japonica
Os05g0342100 Oryza sativa ssp. japonica
Os07g0691300 Oryza sativa ssp. japonica
Peaxi162Scf00284g00016 Petunia axillaris
Peaxi162Scf00304g00214 Petunia axillaris
Peaxi162Scf00744g10017 Petunia axillaris
PGR031G3984 Punica granatum
PGR044G1046 Punica granatum
PGR142G0934 Punica granatum
PGR142G3506 Punica granatum
PGSC0003DMG400006643 Solanum tuberosum
PGSC0003DMG400017895 Solanum tuberosum
PGSC0003DMG400026616 Solanum tuberosum
Phvul.001G247700 Phaseolus vulgaris
Phvul.006G074700 Phaseolus vulgaris
Phvul.008G251001 Phaseolus vulgaris
Phvul.010G061500 Phaseolus vulgaris
Potri.008G075200 Populus trichocarpa
Potri.010G182200 Populus trichocarpa
Potri.013G153801 Populus trichocarpa
Potri.016G129500 Populus trichocarpa
Potri.016G129600 Populus trichocarpa
Potri.019G125900 Populus trichocarpa
Pp3c11_3310 Physcomitrium patens
Pp3c12_4310 Physcomitrium patens
Pp3c13_21870 Physcomitrium patens
Pp3c5_18730 Physcomitrium patens
Prupe.2G258900 Prunus persica
Prupe.6G046200 Prunus persica
Prupe.6G046300 Prunus persica
Prupe.6G286900 Prunus persica
Psat0s1426g0080 Pisum sativum
Psat0s2636g0040 Pisum sativum
Psat5g152440 Pisum sativum
PSO017G1807 Papaver somniferum
PSO135G0469 Papaver somniferum
PSO170G1388 Papaver somniferum
PSO170G6531 Papaver somniferum
PSO339G0613 Papaver somniferum
PSO384G2774 Papaver somniferum
PSO724G0508 Papaver somniferum
QL01p025777 Quercus lobata
QL01p025785 Quercus lobata
QL07p033556 Quercus lobata
QL08p064204 Quercus lobata
RcHm_v2.0_Chr3g0461091 Rosa chinensis
RcHm_v2.0_Chr5g0071881 Rosa chinensis
RcHm_v2.0_Chr5g0071891 Rosa chinensis
Rhsim03G0149200 Rhododendron simsii
Rhsim05G0227200 Rhododendron simsii
Rhsim09G0182000 Rhododendron simsii
Rhsim13G0062800 Rhododendron simsii
Rhsim13G0062900 Rhododendron simsii
Sabra08G0055700 Salix brachista
Sabra10G0139500 Salix brachista
Sabra16G0129100 Salix brachista
Sabra19G0123900 Salix brachista
Sabra19G0130700 Salix brachista
SalBow4G1534 Salvia bowleyana
Sc02g0000660 Simmondsia chinensis
Sc11g0005560 Simmondsia chinensis
Sc14g0005570 Simmondsia chinensis
Sed0006255 Sechium edule
Sed0008318 Sechium edule
Sed0012456 Sechium edule
Sed0015931 Sechium edule
SEGI_03244 Sequoiadendron giganteum
SEGI_08396 Sequoiadendron giganteum
SEGI_17931 Sequoiadendron giganteum
SEGI_21280 Sequoiadendron giganteum
SEGI_37092 Sequoiadendron giganteum
SEGI_38918 Sequoiadendron giganteum
SGA_v2.0_scaffold60G20941 Striga asiatica
SGA_v2.0_scaffold75G25040 Striga asiatica
SMO134G0085 Selaginella moellendorffii
SMO367G0022 Selaginella moellendorffii
Solyc06g048820.1 Solanum lycopersicum
Solyc06g050760.1 Solanum lycopersicum
Solyc09g014940.3 Solanum lycopersicum
Sopen06g015110 Solanum pennellii
Sopen06g016330 Solanum pennellii
Sopen09g007900 Solanum pennellii
Sp3g09320 Schrenkiella parvula
Sp6g41000 Schrenkiella parvula
TAR623G0164 Trochodendron aralioides
TAR623G1633 Trochodendron aralioides
THA.LOC104816523 Tarenaya hassleriana
THA.LOC104826836 Tarenaya hassleriana
Thecc.05G004200 Theobroma cacao
Thecc.09G359300 Theobroma cacao
Thecc.10G008000 Theobroma cacao
Thhalv10014882m.g Eutrema salsugineum
Thhalv10022397m.g Eutrema salsugineum
TPR.G18665 Trifolium pratense
TPR.G22360 Trifolium pratense
TPR.G25343 Trifolium pratense
TPR.G25680 Trifolium pratense
TPR.G25708 Trifolium pratense
TPR.G28645 Trifolium pratense
TWI09G1182 Tripterygium wilfordii
TWI53G1305 Tripterygium wilfordii
TWI73G0091 Tripterygium wilfordii
TWI74G0143 Tripterygium wilfordii
TWI74G0396 Tripterygium wilfordii
TWI77G0026 Tripterygium wilfordii
TWI77G1013 Tripterygium wilfordii
unitig_0.g2178 Utricularia gibba
unitig_0.g254 Utricularia gibba
unitig_62.g23926 Utricularia gibba
unitig_699.g19376 Utricularia gibba
vmacro02907 Vaccinium macrocarpon
vmacro02908 Vaccinium macrocarpon
vmacro09988 Vaccinium macrocarpon
vmacro09989 Vaccinium macrocarpon
VMungo0331G0593 Vigna mungo
VMungo0540G2383 Vigna mungo
VMungo0647G0306 Vigna mungo
VMungo1383G2639 Vigna mungo
VMungo1383G3264 Vigna mungo
Zm00001eb013910 Zea mays
Zm00001eb286540 Zea mays
Zm00001eb331450 Zea mays
Zm00001eb396640 Zea mays

User provided reference genes

Program Settings