Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '396', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p16860' => 'bna', 'A05p09590' => 'bna', 'A06p16290' => 'bna', 'A06p19100' => 'bna', 'A07p13970' => 'bna', 'A07p37170' => 'bna', 'A07p37180' => 'bna', 'A09p11500' => 'bna', 'A09p41590' => 'bna', 'A09p68750' => 'bna', 'A09p68770' => 'bna', 'Aa31LG4G10220' => 'aar', 'Aa31LG7G7180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.252' => 'aag', 'Actinidia17215' => 'ach', 'Ah.02g127830' => 'amhyb', 'Ah.03g137340' => 'amhyb', 'Ah.12g060110' => 'amhyb', 'AL1G36840' => 'aly', 'AL2G10020' => 'aly', 'AL2G30210' => 'aly', 'AL358U10010' => 'aly', 'AL3G23430' => 'aly', 'AL3G39240' => 'aly', 'AL4G24460' => 'aly', 'AL4G36320' => 'aly', 'AL4G47590' => 'aly', 'AL5G10600' => 'aly', 'AL5G11480' => 'aly', 'AL5G13120' => 'aly', 'AL6G43120' => 'aly', 'AL8G20500' => 'aly', 'AL8G20510' => 'aly', 'AL8G20590' => 'aly', 'AL92U10020' => 'aly', 'Aqoxy3G00053' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6GC407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJUW9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEI9RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRPJ7L' => 'arhy', 'AT1G23170' => 'ath', 'AT1G70770' => 'ath', 'AT2G18070' => 'ath', 'AT3G11880' => 'ath', 'ATR0030G050' => 'atr', 'ATR0317G119' => 'atr', 'Atru.chr1.1897' => 'acertr', 'Atru.chr11.655' => 'acertr', 'AUR62014193' => 'cqu', 'AUR62039524' => 'cqu', 'BcaB01g02922' => 'bca', 'BcaB02g09367' => 'bca', 'BcaB02g09720' => 'bca', 'BcaB03g14163' => 'bca', 'BcaB03g14164' => 'bca', 'BcaB03g14927' => 'bca', 'BcaB03g14928' => 'bca', 'BcaB03g15557' => 'bca', 'BcaB03g16639' => 'bca', 'BcaB04g18189' => 'bca', 'BcaB04g18797' => 'bca', 'BcaB05g22201' => 'bca', 'BcaB05g23581' => 'bca', 'BcaB05g23680' => 'bca', 'BcaB05g23776' => 'bca', 'BcaB05g24611' => 'bca', 'BcaB06g26241' => 'bca', 'BcaB07g31320' => 'bca', 'BcaB07g31711' => 'bca', 'BcaB07g32184' => 'bca', 'BcaB07g32186' => 'bca', 'BcaC01g02598' => 'bca', 'BcaC01g04297' => 'bca', 'BcaC02g11735' => 'bca', 'BcaC03g15232' => 'bca', 'BcaC04g20348' => 'bca', 'BcaC04g22129' => 'bca', 'BcaC04g22952' => 'bca', 'BcaC05g26112' => 'bca', 'BcaC05g26224' => 'bca', 'BcaC07g39024' => 'bca', 'BcaC07g42244' => 'bca', 'BcaC07g42253' => 'bca', 'BcaC07g42254' => 'bca', 'BcaC07g42361' => 'bca', 'BcaC07g42364' => 'bca', 'BcaC07g42370' => 'bca', 'BcaC07g42388' => 'bca', 'BcaC08g46510' => 'bca', 'BcaC08g46512' => 'bca', 'BcaC08g46656' => 'bca', 'BcaC08g46657' => 'bca', 'BcaC08g46658' => 'bca', 'BolC2t08862H' => 'bol', 'BolC3t16581H' => 'bol', 'BolC3t18555H' => 'bol', 'BolC4t22835H' => 'bol', 'BolC4t25710H' => 'bol', 'BolC5t30788H' => 'bol', 'BolC5t30935H' => 'bol', 'BolC6t39543H' => 'bol', 'BolC6t39545H' => 'bol', 'BolC6t39669H' => 'bol', 'BolC6t39670H' => 'bol', 'BolC6t39671H' => 'bol', 'BolC6t39672H' => 'bol', 'BolC6t39674H' => 'bol', 'BolC8t49634H' => 'bol', 'BolC8t52847H' => 'bol', 'BolC8t52860H' => 'bol', 'BolC9t54243H' => 'bol', 'BolC9t57339H' => 'bol', 'BraA02t06740Z' => 'bra', 'BraA03t10631Z' => 'bra', 'BraA04t16207Z' => 'bra', 'BraA05t19912Z' => 'bra', 'BraA05t21404Z' => 'bra', 'BraA06t24731Z' => 'bra', 'BraA06t24993Z' => 'bra', 'BraA07t29153Z' => 'bra', 'BraA07t30731Z' => 'bra', 'BraA07t31279Z' => 'bra', 'BraA08t33057Z' => 'bra', 'BraA09t36790Z' => 'bra', 'BraA09t39650Z' => 'bra', 'BraA09t42214Z' => 'bra', 'C02p28180' => 'bna', 'C02p29700' => 'bna', 'C04p11860' => 'bna', 'C04p11870' => 'bna', 'C05p20900' => 'bna', 'C05p20910' => 'bna', 'C05p20920' => 'bna', 'C05p22380' => 'bna', 'C06p44840' => 'bna', 'C06p44860' => 'bna', 'C06p46150' => 'bna', 'C06p46200' => 'bna', 'C06p46240' => 'bna', 'C06p46250' => 'bna', 'C06p46270' => 'bna', 'C06p46280' => 'bna', 'C06p46290' => 'bna', 'C08p11190' => 'bna', 'C08p19980' => 'bna', 'C08p52770' => 'bna', 'C08p53320' => 'bna', 'C09p13520' => 'bna', 'C09p44620' => 'bna', 'C09p67410' => 'bna', 'CAN.G1027.1' => 'can', 'CAN.G222.9' => 'can', 'CANSAT01G0343' => 'cansat', 'CANSAT01G1495' => 'cansat', 'CARHR023630' => 'chi', 'CARHR030430' => 'chi', 'CARHR064030' => 'chi', 'CARHR108790' => 'chi', 'CARHR108800' => 'chi', 'CARHR111720' => 'chi', 'CARHR128760' => 'chi', 'CARHR133670' => 'chi', 'CARHR133680' => 'chi', 'CARHR184760' => 'chi', 'CARHR234650' => 'chi', 'CARHR237900' => 'chi', 'CARHR237910' => 'chi', 'CARHR254720' => 'chi', 'CARHR289260' => 'chi', 'Carub.0001s2274' => 'cru', 'Carub.0002s1751' => 'cru', 'Carub.0004s1079' => 'cru', 'Carub.0004s1259' => 'cru', 'Carub.0005s0085' => 'cru', 'Carub.0007s3365' => 'cru', 'Carub.0007s3366' => 'cru', 'Carub.0007s3370' => 'cru', 'Carub.0007s3371' => 'cru', 'Ca_11593_v3' => 'car', 'CBR_g33920' => 'cbr', 'Cc06_g23100' => 'ccan', 'Cc07_g13540' => 'ccan', 'Cc11_g08280' => 'ccan', 'CDE02G0948' => 'cde', 'CDE08G1097' => 'cde', 'Cfa007819' => 'cfa', 'Cfa014978' => 'cfa', 'Ciclev10011364m.g' => 'ccl', 'Ciclev10014686m.g' => 'ccl', 'CiPaw.03G071300' => 'cil', 'CiPaw.04G047100' => 'cil', 'CiPaw.05G193800' => 'cil', 'ClCG07G005980' => 'cla', 'COL.COLO4_09035' => 'col', 'COL.COLO4_11968' => 'col', 'COL.COLO4_13102' => 'col', 'Cpa.g.sc1084.3' => 'cpa', 'Cpa.g.sc116.51' => 'cpa', 'CsaV3_5G014690' => 'csa', 'CSS0014868' => 'camsi', 'DCAR_007312' => 'dca', 'DCAR_030239' => 'dca', 'Dinv14577' => 'din', 'Dinv18614' => 'din', 'Dinv19032' => 'din', 'Dinv26230' => 'din', 'Dinv28043' => 'din', 'Dinv28211' => 'din', 'Duzib133G1256' => 'dzi', 'Duzib211G0133' => 'dzi', 'Duzib251G0655' => 'dzi', 'Duzib268G1042' => 'dzi', 'ECA233G3051' => 'eca', 'EL10Ac6g14195' => 'bvu', 'Eucgr.F02850' => 'egr', 'FAN12G0350' => 'fan', 'FAN17G2556' => 'fan', 'FAN19G2032' => 'fan', 'FAN22G0549' => 'fan', 'FAN23G2186' => 'fan', 'FAN23G2595' => 'fan', 'FAN26G1532' => 'fan', 'FAN28G0984' => 'fan', 'FAN28G2761' => 'fan', 'FvH4_1g28730' => 'fve', 'FvH4_4g34080' => 'fve', 'Glyma.02G245500' => 'gma', 'Glyma.05G139900' => 'gma', 'Glyma.08G095200' => 'gma', 'Glyma.14G215700' => 'gma', 'Gohir.A01G150100' => 'ghi', 'Gohir.A04G141800' => 'ghi', 'Gohir.A07G078500' => 'ghi', 'Gohir.D01G143400' => 'ghi', 'Gohir.D04G187100' => 'ghi', 'Gohir.D07G083600' => 'ghi', 'Gorai.001G089200' => 'gra', 'Gorai.002G176900' => 'gra', 'Gorai.012G181300' => 'gra', 'GSVIVG01011708001' => 'vvi', 'GSVIVG01030770001' => 'vvi', 'HanXRQChr09g0258881' => 'han', 'HanXRQChr12g0363531' => 'han', 'HanXRQChr16g0529811' => 'han', 'HanXRQChr17g0566831' => 'han', 'Haze_10943' => 'cav', 'Haze_10944' => 'cav', 'Haze_14256' => 'cav', 'Hma1.2p1_0120F.1_g057100' => 'hma', 'Hma1.2p1_0330F.1_g127380' => 'hma', 'Hma1.2p1_0346F.1_g131550' => 'hma', 'Hma1.2p1_0524F.1_g172390' => 'hma', 'Hma1.2p1_1541F.1_g289690' => 'hma', 'HPP92_000178' => 'vpl', 'HPP92_021860' => 'vpl', 'Hund13110' => 'sun', 'Hund24965' => 'sun', 'Lalb_Chr00c06g0404611' => 'lal', 'Lalb_Chr00c06g0404621' => 'lal', 'Lalb_Chr00c06g0404631' => 'lal', 'Lalb_Chr07g0187721' => 'lal', 'Lalb_Chr10g0104401' => 'lal', 'Lalb_Chr12g0206771' => 'lal', 'Lalb_Chr13g0293721' => 'lal', 'Lj3A867T57' => 'lonja', 'Lj4A264T54' => 'lonja', 'Lj4g0004401' => 'lja', 'Lj6A742T65' => 'lonja', 'LjContig00141g0001694' => 'lja', 'Lsat_1_v5_gn_0_33361' => 'lsa', 'Lsat_1_v5_gn_0_36040' => 'lsa', 'Lsat_1_v5_gn_3_124180' => 'lsa', 'Lsat_1_v5_gn_3_128140' => 'lsa', 'Lsat_1_v5_gn_4_13621' => 'lsa', 'Lsat_1_v5_gn_5_34340' => 'lsa', 'Lsat_1_v5_gn_6_37120' => 'lsa', 'Lsat_1_v5_gn_7_69360' => 'lsa', 'Lsat_1_v5_gn_8_115241' => 'lsa', 'Lsat_1_v5_gn_8_14100' => 'lsa', 'Lsat_1_v5_gn_8_44220' => 'lsa', 'Manes.02G076500' => 'mes', 'Manes.15G131000' => 'mes', 'Manes.17G080400' => 'mes', 'Mapoly0031s0122' => 'mpo', 'MD00G1185200' => 'mdo', 'MD09G1264000' => 'mdo', 'MD13G1022000' => 'mdo', 'MD16G1023000' => 'mdo', 'MELO3C026422.2' => 'cme', 'Migut.E00447' => 'egut', 'Migut.L00397' => 'egut', 'MSTRG.13605' => 'ama', 'MSTRG.2151' => 'ama', 'Nitab4.5_0000135g0070' => 'nta', 'Nitab4.5_0000201g0300' => 'nta', 'Nitab4.5_0003406g0020' => 'nta', 'Nn1g04255' => 'nnu', 'Nn2g13629' => 'nnu', 'Nn2g13630' => 'nnu', 'Nn3g18292' => 'nnu', 'Nn4g24249' => 'nnu', 'Oeu014046.2' => 'oeu', 'Oeu032261.1' => 'oeu', 'Oeu059516.1' => 'oeu', 'Os01g0128400' => 'osa', 'Peaxi162Scf00008g00213' => 'pax', 'Peaxi162Scf00188g00047' => 'pax', 'Peaxi162Scf00305g01116' => 'pax', 'Peaxi162Scf00376g00120' => 'pax', 'Peaxi162Scf00980g00013' => 'pax', 'Peaxi162Scf00980g10015' => 'pax', 'PGR004G1776' => 'pgr', 'PGR042G2918' => 'pgr', 'PGSC0003DMG400015690' => 'stu', 'PGSC0003DMG400015904' => 'stu', 'Phvul.002G183300' => 'pvu', 'Phvul.008G235400' => 'pvu', 'Potri.004G091100' => 'ptr', 'Potri.008G131800' => 'ptr', 'Potri.010G110500' => 'ptr', 'Potri.017G124300' => 'ptr', 'Pp3c11_18730' => 'ppa', 'Pp3c7_7370' => 'ppa', 'Prupe.1G329900' => 'ppe', 'Prupe.3G161600' => 'ppe', 'Psat7g082560' => 'psa', 'Psat7g104280' => 'psa', 'PSO017G3508' => 'pso', 'PSO478G5318' => 'pso', 'QL02p057972' => 'qlo', 'QL03p031232' => 'qlo', 'QL03p033886' => 'qlo', 'QL93p0100_0380' => 'qlo', 'RcHm_v2.0_Chr3g0493091' => 'rch', 'RcHm_v2.0_Chr4g0443601' => 'rch', 'RcHm_v2.0_Chr5g0017851' => 'rch', 'Rhsim03G0110000' => 'rsi', 'Rhsim03G0182700' => 'rsi', 'Rhsim09G0094000' => 'rsi', 'Rhsim10G0176900' => 'rsi', 'Rhsim13G0132300' => 'rsi', 'Sabra04G0061300' => 'sbr', 'Sabra08G0100600' => 'sbr', 'Sabra10G0080800' => 'sbr', 'Sabra17G0102300' => 'sbr', 'Sabra17G0102400' => 'sbr', 'Sabra17G0105000' => 'sbr', 'SalBow2G0126' => 'sbo', 'SalBow2G2060' => 'sbo', 'SalBow8G0986' => 'sbo', 'Sc04g0005310' => 'sci', 'Sed0001736' => 'sed', 'Sed0027263' => 'sed', 'SEGI_03798' => 'sgi', 'SEGI_04813' => 'sgi', 'SEGI_22109' => 'sgi', 'SEGI_33231' => 'sgi', 'SGA_v2.0_scaffold234G43657' => 'sas', 'SGA_v2.0_scaffold50G18475' => 'sas', 'SGA_v2.0_scaffold50G18479' => 'sas', 'SHI04565' => 'shi', 'SHI46665' => 'shi', 'SHI46666' => 'shi', 'Solyc05g026540.3' => 'sly', 'Solyc11g011220.2' => 'sly', 'Sopen05g023000' => 'spe', 'Sopen11g006000' => 'spe', 'Sp1g20630' => 'spa', 'Sp3g30860' => 'spa', 'Sp3g31060' => 'spa', 'Sp5g25950' => 'spa', 'TAR371G0200' => 'tar', 'TAR374G0312' => 'tar', 'TAR622G0558' => 'tar', 'THA.LOC104823001' => 'tha', 'Thecc.01G198700' => 'tca', 'Thecc.02G287300' => 'tca', 'Thecc.04G116400' => 'tca', 'Thhalv10007115m.g' => 'esa', 'Thhalv10018292m.g' => 'esa', 'TPR.G17669' => 'tpr', 'TPR.G38617' => 'tpr', 'TPR.G38658' => 'tpr', 'TPR.G5140' => 'tpr', 'TWI53G0025' => 'twi', 'TWI53G1931' => 'twi', 'TWI74G1681' => 'twi', 'TWI77G0817' => 'twi', 'unitig_52.g17277' => 'ugi', 'unitig_62.g23738' => 'ugi', 'vmacro07690' => 'vma', 'vmacro10661' => 'vma', 'VMungo0251G1445' => 'vmu', 'VMungo0647G0260' => 'vmu', 'Zm00001eb125460' => 'zma', 'Zm00001eb335090' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001630', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001630' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '396', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001630' ) ), 'genes' => array( 'A02p16860' => 'bna', 'A05p09590' => 'bna', 'A06p16290' => 'bna', 'A06p19100' => 'bna', 'A07p13970' => 'bna', 'A07p37170' => 'bna', 'A07p37180' => 'bna', 'A09p11500' => 'bna', 'A09p41590' => 'bna', 'A09p68750' => 'bna', 'A09p68770' => 'bna', 'Aa31LG4G10220' => 'aar', 'Aa31LG7G7180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.252' => 'aag', 'Actinidia17215' => 'ach', 'Ah.02g127830' => 'amhyb', 'Ah.03g137340' => 'amhyb', 'Ah.12g060110' => 'amhyb', 'AL1G36840' => 'aly', 'AL2G10020' => 'aly', 'AL2G30210' => 'aly', 'AL358U10010' => 'aly', 'AL3G23430' => 'aly', 'AL3G39240' => 'aly', 'AL4G24460' => 'aly', 'AL4G36320' => 'aly', 'AL4G47590' => 'aly', 'AL5G10600' => 'aly', 'AL5G11480' => 'aly', 'AL5G13120' => 'aly', 'AL6G43120' => 'aly', 'AL8G20500' => 'aly', 'AL8G20510' => 'aly', 'AL8G20590' => 'aly', 'AL92U10020' => 'aly', 'Aqoxy3G00053' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6GC407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJUW9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEI9RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRPJ7L' => 'arhy', 'AT1G23170' => 'ath', 'AT1G70770' => 'ath', 'AT2G18070' => 'ath', 'AT3G11880' => 'ath', 'ATR0030G050' => 'atr', 'ATR0317G119' => 'atr', 'Atru.chr1.1897' => 'acertr', 'Atru.chr11.655' => 'acertr', 'AUR62014193' => 'cqu', 'AUR62039524' => 'cqu', 'BcaB01g02922' => 'bca', 'BcaB02g09367' => 'bca', 'BcaB02g09720' => 'bca', 'BcaB03g14163' => 'bca', 'BcaB03g14164' => 'bca', 'BcaB03g14927' => 'bca', 'BcaB03g14928' => 'bca', 'BcaB03g15557' => 'bca', 'BcaB03g16639' => 'bca', 'BcaB04g18189' => 'bca', 'BcaB04g18797' => 'bca', 'BcaB05g22201' => 'bca', 'BcaB05g23581' => 'bca', 'BcaB05g23680' => 'bca', 'BcaB05g23776' => 'bca', 'BcaB05g24611' => 'bca', 'BcaB06g26241' => 'bca', 'BcaB07g31320' => 'bca', 'BcaB07g31711' => 'bca', 'BcaB07g32184' => 'bca', 'BcaB07g32186' => 'bca', 'BcaC01g02598' => 'bca', 'BcaC01g04297' => 'bca', 'BcaC02g11735' => 'bca', 'BcaC03g15232' => 'bca', 'BcaC04g20348' => 'bca', 'BcaC04g22129' => 'bca', 'BcaC04g22952' => 'bca', 'BcaC05g26112' => 'bca', 'BcaC05g26224' => 'bca', 'BcaC07g39024' => 'bca', 'BcaC07g42244' => 'bca', 'BcaC07g42253' => 'bca', 'BcaC07g42254' => 'bca', 'BcaC07g42361' => 'bca', 'BcaC07g42364' => 'bca', 'BcaC07g42370' => 'bca', 'BcaC07g42388' => 'bca', 'BcaC08g46510' => 'bca', 'BcaC08g46512' => 'bca', 'BcaC08g46656' => 'bca', 'BcaC08g46657' => 'bca', 'BcaC08g46658' => 'bca', 'BolC2t08862H' => 'bol', 'BolC3t16581H' => 'bol', 'BolC3t18555H' => 'bol', 'BolC4t22835H' => 'bol', 'BolC4t25710H' => 'bol', 'BolC5t30788H' => 'bol', 'BolC5t30935H' => 'bol', 'BolC6t39543H' => 'bol', 'BolC6t39545H' => 'bol', 'BolC6t39669H' => 'bol', 'BolC6t39670H' => 'bol', 'BolC6t39671H' => 'bol', 'BolC6t39672H' => 'bol', 'BolC6t39674H' => 'bol', 'BolC8t49634H' => 'bol', 'BolC8t52847H' => 'bol', 'BolC8t52860H' => 'bol', 'BolC9t54243H' => 'bol', 'BolC9t57339H' => 'bol', 'BraA02t06740Z' => 'bra', 'BraA03t10631Z' => 'bra', 'BraA04t16207Z' => 'bra', 'BraA05t19912Z' => 'bra', 'BraA05t21404Z' => 'bra', 'BraA06t24731Z' => 'bra', 'BraA06t24993Z' => 'bra', 'BraA07t29153Z' => 'bra', 'BraA07t30731Z' => 'bra', 'BraA07t31279Z' => 'bra', 'BraA08t33057Z' => 'bra', 'BraA09t36790Z' => 'bra', 'BraA09t39650Z' => 'bra', 'BraA09t42214Z' => 'bra', 'C02p28180' => 'bna', 'C02p29700' => 'bna', 'C04p11860' => 'bna', 'C04p11870' => 'bna', 'C05p20900' => 'bna', 'C05p20910' => 'bna', 'C05p20920' => 'bna', 'C05p22380' => 'bna', 'C06p44840' => 'bna', 'C06p44860' => 'bna', 'C06p46150' => 'bna', 'C06p46200' => 'bna', 'C06p46240' => 'bna', 'C06p46250' => 'bna', 'C06p46270' => 'bna', 'C06p46280' => 'bna', 'C06p46290' => 'bna', 'C08p11190' => 'bna', 'C08p19980' => 'bna', 'C08p52770' => 'bna', 'C08p53320' => 'bna', 'C09p13520' => 'bna', 'C09p44620' => 'bna', 'C09p67410' => 'bna', 'CAN.G1027.1' => 'can', 'CAN.G222.9' => 'can', 'CANSAT01G0343' => 'cansat', 'CANSAT01G1495' => 'cansat', 'CARHR023630' => 'chi', 'CARHR030430' => 'chi', 'CARHR064030' => 'chi', 'CARHR108790' => 'chi', 'CARHR108800' => 'chi', 'CARHR111720' => 'chi', 'CARHR128760' => 'chi', 'CARHR133670' => 'chi', 'CARHR133680' => 'chi', 'CARHR184760' => 'chi', 'CARHR234650' => 'chi', 'CARHR237900' => 'chi', 'CARHR237910' => 'chi', 'CARHR254720' => 'chi', 'CARHR289260' => 'chi', 'Carub.0001s2274' => 'cru', 'Carub.0002s1751' => 'cru', 'Carub.0004s1079' => 'cru', 'Carub.0004s1259' => 'cru', 'Carub.0005s0085' => 'cru', 'Carub.0007s3365' => 'cru', 'Carub.0007s3366' => 'cru', 'Carub.0007s3370' => 'cru', 'Carub.0007s3371' => 'cru', 'Ca_11593_v3' => 'car', 'CBR_g33920' => 'cbr', 'Cc06_g23100' => 'ccan', 'Cc07_g13540' => 'ccan', 'Cc11_g08280' => 'ccan', 'CDE02G0948' => 'cde', 'CDE08G1097' => 'cde', 'Cfa007819' => 'cfa', 'Cfa014978' => 'cfa', 'Ciclev10011364m.g' => 'ccl', 'Ciclev10014686m.g' => 'ccl', 'CiPaw.03G071300' => 'cil', 'CiPaw.04G047100' => 'cil', 'CiPaw.05G193800' => 'cil', 'ClCG07G005980' => 'cla', 'COL.COLO4_09035' => 'col', 'COL.COLO4_11968' => 'col', 'COL.COLO4_13102' => 'col', 'Cpa.g.sc1084.3' => 'cpa', 'Cpa.g.sc116.51' => 'cpa', 'CsaV3_5G014690' => 'csa', 'CSS0014868' => 'camsi', 'DCAR_007312' => 'dca', 'DCAR_030239' => 'dca', 'Dinv14577' => 'din', 'Dinv18614' => 'din', 'Dinv19032' => 'din', 'Dinv26230' => 'din', 'Dinv28043' => 'din', 'Dinv28211' => 'din', 'Duzib133G1256' => 'dzi', 'Duzib211G0133' => 'dzi', 'Duzib251G0655' => 'dzi', 'Duzib268G1042' => 'dzi', 'ECA233G3051' => 'eca', 'EL10Ac6g14195' => 'bvu', 'Eucgr.F02850' => 'egr', 'FAN12G0350' => 'fan', 'FAN17G2556' => 'fan', 'FAN19G2032' => 'fan', 'FAN22G0549' => 'fan', 'FAN23G2186' => 'fan', 'FAN23G2595' => 'fan', 'FAN26G1532' => 'fan', 'FAN28G0984' => 'fan', 'FAN28G2761' => 'fan', 'FvH4_1g28730' => 'fve', 'FvH4_4g34080' => 'fve', 'Glyma.02G245500' => 'gma', 'Glyma.05G139900' => 'gma', 'Glyma.08G095200' => 'gma', 'Glyma.14G215700' => 'gma', 'Gohir.A01G150100' => 'ghi', 'Gohir.A04G141800' => 'ghi', 'Gohir.A07G078500' => 'ghi', 'Gohir.D01G143400' => 'ghi', 'Gohir.D04G187100' => 'ghi', 'Gohir.D07G083600' => 'ghi', 'Gorai.001G089200' => 'gra', 'Gorai.002G176900' => 'gra', 'Gorai.012G181300' => 'gra', 'GSVIVG01011708001' => 'vvi', 'GSVIVG01030770001' => 'vvi', 'HanXRQChr09g0258881' => 'han', 'HanXRQChr12g0363531' => 'han', 'HanXRQChr16g0529811' => 'han', 'HanXRQChr17g0566831' => 'han', 'Haze_10943' => 'cav', 'Haze_10944' => 'cav', 'Haze_14256' => 'cav', 'Hma1.2p1_0120F.1_g057100' => 'hma', 'Hma1.2p1_0330F.1_g127380' => 'hma', 'Hma1.2p1_0346F.1_g131550' => 'hma', 'Hma1.2p1_0524F.1_g172390' => 'hma', 'Hma1.2p1_1541F.1_g289690' => 'hma', 'HPP92_000178' => 'vpl', 'HPP92_021860' => 'vpl', 'Hund13110' => 'sun', 'Hund24965' => 'sun', 'Lalb_Chr00c06g0404611' => 'lal', 'Lalb_Chr00c06g0404621' => 'lal', 'Lalb_Chr00c06g0404631' => 'lal', 'Lalb_Chr07g0187721' => 'lal', 'Lalb_Chr10g0104401' => 'lal', 'Lalb_Chr12g0206771' => 'lal', 'Lalb_Chr13g0293721' => 'lal', 'Lj3A867T57' => 'lonja', 'Lj4A264T54' => 'lonja', 'Lj4g0004401' => 'lja', 'Lj6A742T65' => 'lonja', 'LjContig00141g0001694' => 'lja', 'Lsat_1_v5_gn_0_33361' => 'lsa', 'Lsat_1_v5_gn_0_36040' => 'lsa', 'Lsat_1_v5_gn_3_124180' => 'lsa', 'Lsat_1_v5_gn_3_128140' => 'lsa', 'Lsat_1_v5_gn_4_13621' => 'lsa', 'Lsat_1_v5_gn_5_34340' => 'lsa', 'Lsat_1_v5_gn_6_37120' => 'lsa', 'Lsat_1_v5_gn_7_69360' => 'lsa', 'Lsat_1_v5_gn_8_115241' => 'lsa', 'Lsat_1_v5_gn_8_14100' => 'lsa', 'Lsat_1_v5_gn_8_44220' => 'lsa', 'Manes.02G076500' => 'mes', 'Manes.15G131000' => 'mes', 'Manes.17G080400' => 'mes', 'Mapoly0031s0122' => 'mpo', 'MD00G1185200' => 'mdo', 'MD09G1264000' => 'mdo', 'MD13G1022000' => 'mdo', 'MD16G1023000' => 'mdo', 'MELO3C026422.2' => 'cme', 'Migut.E00447' => 'egut', 'Migut.L00397' => 'egut', 'MSTRG.13605' => 'ama', 'MSTRG.2151' => 'ama', 'Nitab4.5_0000135g0070' => 'nta', 'Nitab4.5_0000201g0300' => 'nta', 'Nitab4.5_0003406g0020' => 'nta', 'Nn1g04255' => 'nnu', 'Nn2g13629' => 'nnu', 'Nn2g13630' => 'nnu', 'Nn3g18292' => 'nnu', 'Nn4g24249' => 'nnu', 'Oeu014046.2' => 'oeu', 'Oeu032261.1' => 'oeu', 'Oeu059516.1' => 'oeu', 'Os01g0128400' => 'osa', 'Peaxi162Scf00008g00213' => 'pax', 'Peaxi162Scf00188g00047' => 'pax', 'Peaxi162Scf00305g01116' => 'pax', 'Peaxi162Scf00376g00120' => 'pax', 'Peaxi162Scf00980g00013' => 'pax', 'Peaxi162Scf00980g10015' => 'pax', 'PGR004G1776' => 'pgr', 'PGR042G2918' => 'pgr', 'PGSC0003DMG400015690' => 'stu', 'PGSC0003DMG400015904' => 'stu', 'Phvul.002G183300' => 'pvu', 'Phvul.008G235400' => 'pvu', 'Potri.004G091100' => 'ptr', 'Potri.008G131800' => 'ptr', 'Potri.010G110500' => 'ptr', 'Potri.017G124300' => 'ptr', 'Pp3c11_18730' => 'ppa', 'Pp3c7_7370' => 'ppa', 'Prupe.1G329900' => 'ppe', 'Prupe.3G161600' => 'ppe', 'Psat7g082560' => 'psa', 'Psat7g104280' => 'psa', 'PSO017G3508' => 'pso', 'PSO478G5318' => 'pso', 'QL02p057972' => 'qlo', 'QL03p031232' => 'qlo', 'QL03p033886' => 'qlo', 'QL93p0100_0380' => 'qlo', 'RcHm_v2.0_Chr3g0493091' => 'rch', 'RcHm_v2.0_Chr4g0443601' => 'rch', 'RcHm_v2.0_Chr5g0017851' => 'rch', 'Rhsim03G0110000' => 'rsi', 'Rhsim03G0182700' => 'rsi', 'Rhsim09G0094000' => 'rsi', 'Rhsim10G0176900' => 'rsi', 'Rhsim13G0132300' => 'rsi', 'Sabra04G0061300' => 'sbr', 'Sabra08G0100600' => 'sbr', 'Sabra10G0080800' => 'sbr', 'Sabra17G0102300' => 'sbr', 'Sabra17G0102400' => 'sbr', 'Sabra17G0105000' => 'sbr', 'SalBow2G0126' => 'sbo', 'SalBow2G2060' => 'sbo', 'SalBow8G0986' => 'sbo', 'Sc04g0005310' => 'sci', 'Sed0001736' => 'sed', 'Sed0027263' => 'sed', 'SEGI_03798' => 'sgi', 'SEGI_04813' => 'sgi', 'SEGI_22109' => 'sgi', 'SEGI_33231' => 'sgi', 'SGA_v2.0_scaffold234G43657' => 'sas', 'SGA_v2.0_scaffold50G18475' => 'sas', 'SGA_v2.0_scaffold50G18479' => 'sas', 'SHI04565' => 'shi', 'SHI46665' => 'shi', 'SHI46666' => 'shi', 'Solyc05g026540.3' => 'sly', 'Solyc11g011220.2' => 'sly', 'Sopen05g023000' => 'spe', 'Sopen11g006000' => 'spe', 'Sp1g20630' => 'spa', 'Sp3g30860' => 'spa', 'Sp3g31060' => 'spa', 'Sp5g25950' => 'spa', 'TAR371G0200' => 'tar', 'TAR374G0312' => 'tar', 'TAR622G0558' => 'tar', 'THA.LOC104823001' => 'tha', 'Thecc.01G198700' => 'tca', 'Thecc.02G287300' => 'tca', 'Thecc.04G116400' => 'tca', 'Thhalv10007115m.g' => 'esa', 'Thhalv10018292m.g' => 'esa', 'TPR.G17669' => 'tpr', 'TPR.G38617' => 'tpr', 'TPR.G38658' => 'tpr', 'TPR.G5140' => 'tpr', 'TWI53G0025' => 'twi', 'TWI53G1931' => 'twi', 'TWI74G1681' => 'twi', 'TWI77G0817' => 'twi', 'unitig_52.g17277' => 'ugi', 'unitig_62.g23738' => 'ugi', 'vmacro07690' => 'vma', 'vmacro10661' => 'vma', 'VMungo0251G1445' => 'vmu', 'VMungo0647G0260' => 'vmu', 'Zm00001eb125460' => 'zma', 'Zm00001eb335090' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001630' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001630' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001630' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001630' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '396', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p16860' => 'bna', 'A05p09590' => 'bna', 'A06p16290' => 'bna', 'A06p19100' => 'bna', 'A07p13970' => 'bna', 'A07p37170' => 'bna', 'A07p37180' => 'bna', 'A09p11500' => 'bna', 'A09p41590' => 'bna', 'A09p68750' => 'bna', 'A09p68770' => 'bna', 'Aa31LG4G10220' => 'aar', 'Aa31LG7G7180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.252' => 'aag', 'Actinidia17215' => 'ach', 'Ah.02g127830' => 'amhyb', 'Ah.03g137340' => 'amhyb', 'Ah.12g060110' => 'amhyb', 'AL1G36840' => 'aly', 'AL2G10020' => 'aly', 'AL2G30210' => 'aly', 'AL358U10010' => 'aly', 'AL3G23430' => 'aly', 'AL3G39240' => 'aly', 'AL4G24460' => 'aly', 'AL4G36320' => 'aly', 'AL4G47590' => 'aly', 'AL5G10600' => 'aly', 'AL5G11480' => 'aly', 'AL5G13120' => 'aly', 'AL6G43120' => 'aly', 'AL8G20500' => 'aly', 'AL8G20510' => 'aly', 'AL8G20590' => 'aly', 'AL92U10020' => 'aly', 'Aqoxy3G00053' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6GC407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJUW9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEI9RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRPJ7L' => 'arhy', 'AT1G23170' => 'ath', 'AT1G70770' => 'ath', 'AT2G18070' => 'ath', 'AT3G11880' => 'ath', 'ATR0030G050' => 'atr', 'ATR0317G119' => 'atr', 'Atru.chr1.1897' => 'acertr', 'Atru.chr11.655' => 'acertr', 'AUR62014193' => 'cqu', 'AUR62039524' => 'cqu', 'BcaB01g02922' => 'bca', 'BcaB02g09367' => 'bca', 'BcaB02g09720' => 'bca', 'BcaB03g14163' => 'bca', 'BcaB03g14164' => 'bca', 'BcaB03g14927' => 'bca', 'BcaB03g14928' => 'bca', 'BcaB03g15557' => 'bca', 'BcaB03g16639' => 'bca', 'BcaB04g18189' => 'bca', 'BcaB04g18797' => 'bca', 'BcaB05g22201' => 'bca', 'BcaB05g23581' => 'bca', 'BcaB05g23680' => 'bca', 'BcaB05g23776' => 'bca', 'BcaB05g24611' => 'bca', 'BcaB06g26241' => 'bca', 'BcaB07g31320' => 'bca', 'BcaB07g31711' => 'bca', 'BcaB07g32184' => 'bca', 'BcaB07g32186' => 'bca', 'BcaC01g02598' => 'bca', 'BcaC01g04297' => 'bca', 'BcaC02g11735' => 'bca', 'BcaC03g15232' => 'bca', 'BcaC04g20348' => 'bca', 'BcaC04g22129' => 'bca', 'BcaC04g22952' => 'bca', 'BcaC05g26112' => 'bca', 'BcaC05g26224' => 'bca', 'BcaC07g39024' => 'bca', 'BcaC07g42244' => 'bca', 'BcaC07g42253' => 'bca', 'BcaC07g42254' => 'bca', 'BcaC07g42361' => 'bca', 'BcaC07g42364' => 'bca', 'BcaC07g42370' => 'bca', 'BcaC07g42388' => 'bca', 'BcaC08g46510' => 'bca', 'BcaC08g46512' => 'bca', 'BcaC08g46656' => 'bca', 'BcaC08g46657' => 'bca', 'BcaC08g46658' => 'bca', 'BolC2t08862H' => 'bol', 'BolC3t16581H' => 'bol', 'BolC3t18555H' => 'bol', 'BolC4t22835H' => 'bol', 'BolC4t25710H' => 'bol', 'BolC5t30788H' => 'bol', 'BolC5t30935H' => 'bol', 'BolC6t39543H' => 'bol', 'BolC6t39545H' => 'bol', 'BolC6t39669H' => 'bol', 'BolC6t39670H' => 'bol', 'BolC6t39671H' => 'bol', 'BolC6t39672H' => 'bol', 'BolC6t39674H' => 'bol', 'BolC8t49634H' => 'bol', 'BolC8t52847H' => 'bol', 'BolC8t52860H' => 'bol', 'BolC9t54243H' => 'bol', 'BolC9t57339H' => 'bol', 'BraA02t06740Z' => 'bra', 'BraA03t10631Z' => 'bra', 'BraA04t16207Z' => 'bra', 'BraA05t19912Z' => 'bra', 'BraA05t21404Z' => 'bra', 'BraA06t24731Z' => 'bra', 'BraA06t24993Z' => 'bra', 'BraA07t29153Z' => 'bra', 'BraA07t30731Z' => 'bra', 'BraA07t31279Z' => 'bra', 'BraA08t33057Z' => 'bra', 'BraA09t36790Z' => 'bra', 'BraA09t39650Z' => 'bra', 'BraA09t42214Z' => 'bra', 'C02p28180' => 'bna', 'C02p29700' => 'bna', 'C04p11860' => 'bna', 'C04p11870' => 'bna', 'C05p20900' => 'bna', 'C05p20910' => 'bna', 'C05p20920' => 'bna', 'C05p22380' => 'bna', 'C06p44840' => 'bna', 'C06p44860' => 'bna', 'C06p46150' => 'bna', 'C06p46200' => 'bna', 'C06p46240' => 'bna', 'C06p46250' => 'bna', 'C06p46270' => 'bna', 'C06p46280' => 'bna', 'C06p46290' => 'bna', 'C08p11190' => 'bna', 'C08p19980' => 'bna', 'C08p52770' => 'bna', 'C08p53320' => 'bna', 'C09p13520' => 'bna', 'C09p44620' => 'bna', 'C09p67410' => 'bna', 'CAN.G1027.1' => 'can', 'CAN.G222.9' => 'can', 'CANSAT01G0343' => 'cansat', 'CANSAT01G1495' => 'cansat', 'CARHR023630' => 'chi', 'CARHR030430' => 'chi', 'CARHR064030' => 'chi', 'CARHR108790' => 'chi', 'CARHR108800' => 'chi', 'CARHR111720' => 'chi', 'CARHR128760' => 'chi', 'CARHR133670' => 'chi', 'CARHR133680' => 'chi', 'CARHR184760' => 'chi', 'CARHR234650' => 'chi', 'CARHR237900' => 'chi', 'CARHR237910' => 'chi', 'CARHR254720' => 'chi', 'CARHR289260' => 'chi', 'Carub.0001s2274' => 'cru', 'Carub.0002s1751' => 'cru', 'Carub.0004s1079' => 'cru', 'Carub.0004s1259' => 'cru', 'Carub.0005s0085' => 'cru', 'Carub.0007s3365' => 'cru', 'Carub.0007s3366' => 'cru', 'Carub.0007s3370' => 'cru', 'Carub.0007s3371' => 'cru', 'Ca_11593_v3' => 'car', 'CBR_g33920' => 'cbr', 'Cc06_g23100' => 'ccan', 'Cc07_g13540' => 'ccan', 'Cc11_g08280' => 'ccan', 'CDE02G0948' => 'cde', 'CDE08G1097' => 'cde', 'Cfa007819' => 'cfa', 'Cfa014978' => 'cfa', 'Ciclev10011364m.g' => 'ccl', 'Ciclev10014686m.g' => 'ccl', 'CiPaw.03G071300' => 'cil', 'CiPaw.04G047100' => 'cil', 'CiPaw.05G193800' => 'cil', 'ClCG07G005980' => 'cla', 'COL.COLO4_09035' => 'col', 'COL.COLO4_11968' => 'col', 'COL.COLO4_13102' => 'col', 'Cpa.g.sc1084.3' => 'cpa', 'Cpa.g.sc116.51' => 'cpa', 'CsaV3_5G014690' => 'csa', 'CSS0014868' => 'camsi', 'DCAR_007312' => 'dca', 'DCAR_030239' => 'dca', 'Dinv14577' => 'din', 'Dinv18614' => 'din', 'Dinv19032' => 'din', 'Dinv26230' => 'din', 'Dinv28043' => 'din', 'Dinv28211' => 'din', 'Duzib133G1256' => 'dzi', 'Duzib211G0133' => 'dzi', 'Duzib251G0655' => 'dzi', 'Duzib268G1042' => 'dzi', 'ECA233G3051' => 'eca', 'EL10Ac6g14195' => 'bvu', 'Eucgr.F02850' => 'egr', 'FAN12G0350' => 'fan', 'FAN17G2556' => 'fan', 'FAN19G2032' => 'fan', 'FAN22G0549' => 'fan', 'FAN23G2186' => 'fan', 'FAN23G2595' => 'fan', 'FAN26G1532' => 'fan', 'FAN28G0984' => 'fan', 'FAN28G2761' => 'fan', 'FvH4_1g28730' => 'fve', 'FvH4_4g34080' => 'fve', 'Glyma.02G245500' => 'gma', 'Glyma.05G139900' => 'gma', 'Glyma.08G095200' => 'gma', 'Glyma.14G215700' => 'gma', 'Gohir.A01G150100' => 'ghi', 'Gohir.A04G141800' => 'ghi', 'Gohir.A07G078500' => 'ghi', 'Gohir.D01G143400' => 'ghi', 'Gohir.D04G187100' => 'ghi', 'Gohir.D07G083600' => 'ghi', 'Gorai.001G089200' => 'gra', 'Gorai.002G176900' => 'gra', 'Gorai.012G181300' => 'gra', 'GSVIVG01011708001' => 'vvi', 'GSVIVG01030770001' => 'vvi', 'HanXRQChr09g0258881' => 'han', 'HanXRQChr12g0363531' => 'han', 'HanXRQChr16g0529811' => 'han', 'HanXRQChr17g0566831' => 'han', 'Haze_10943' => 'cav', 'Haze_10944' => 'cav', 'Haze_14256' => 'cav', 'Hma1.2p1_0120F.1_g057100' => 'hma', 'Hma1.2p1_0330F.1_g127380' => 'hma', 'Hma1.2p1_0346F.1_g131550' => 'hma', 'Hma1.2p1_0524F.1_g172390' => 'hma', 'Hma1.2p1_1541F.1_g289690' => 'hma', 'HPP92_000178' => 'vpl', 'HPP92_021860' => 'vpl', 'Hund13110' => 'sun', 'Hund24965' => 'sun', 'Lalb_Chr00c06g0404611' => 'lal', 'Lalb_Chr00c06g0404621' => 'lal', 'Lalb_Chr00c06g0404631' => 'lal', 'Lalb_Chr07g0187721' => 'lal', 'Lalb_Chr10g0104401' => 'lal', 'Lalb_Chr12g0206771' => 'lal', 'Lalb_Chr13g0293721' => 'lal', 'Lj3A867T57' => 'lonja', 'Lj4A264T54' => 'lonja', 'Lj4g0004401' => 'lja', 'Lj6A742T65' => 'lonja', 'LjContig00141g0001694' => 'lja', 'Lsat_1_v5_gn_0_33361' => 'lsa', 'Lsat_1_v5_gn_0_36040' => 'lsa', 'Lsat_1_v5_gn_3_124180' => 'lsa', 'Lsat_1_v5_gn_3_128140' => 'lsa', 'Lsat_1_v5_gn_4_13621' => 'lsa', 'Lsat_1_v5_gn_5_34340' => 'lsa', 'Lsat_1_v5_gn_6_37120' => 'lsa', 'Lsat_1_v5_gn_7_69360' => 'lsa', 'Lsat_1_v5_gn_8_115241' => 'lsa', 'Lsat_1_v5_gn_8_14100' => 'lsa', 'Lsat_1_v5_gn_8_44220' => 'lsa', 'Manes.02G076500' => 'mes', 'Manes.15G131000' => 'mes', 'Manes.17G080400' => 'mes', 'Mapoly0031s0122' => 'mpo', 'MD00G1185200' => 'mdo', 'MD09G1264000' => 'mdo', 'MD13G1022000' => 'mdo', 'MD16G1023000' => 'mdo', 'MELO3C026422.2' => 'cme', 'Migut.E00447' => 'egut', 'Migut.L00397' => 'egut', 'MSTRG.13605' => 'ama', 'MSTRG.2151' => 'ama', 'Nitab4.5_0000135g0070' => 'nta', 'Nitab4.5_0000201g0300' => 'nta', 'Nitab4.5_0003406g0020' => 'nta', 'Nn1g04255' => 'nnu', 'Nn2g13629' => 'nnu', 'Nn2g13630' => 'nnu', 'Nn3g18292' => 'nnu', 'Nn4g24249' => 'nnu', 'Oeu014046.2' => 'oeu', 'Oeu032261.1' => 'oeu', 'Oeu059516.1' => 'oeu', 'Os01g0128400' => 'osa', 'Peaxi162Scf00008g00213' => 'pax', 'Peaxi162Scf00188g00047' => 'pax', 'Peaxi162Scf00305g01116' => 'pax', 'Peaxi162Scf00376g00120' => 'pax', 'Peaxi162Scf00980g00013' => 'pax', 'Peaxi162Scf00980g10015' => 'pax', 'PGR004G1776' => 'pgr', 'PGR042G2918' => 'pgr', 'PGSC0003DMG400015690' => 'stu', 'PGSC0003DMG400015904' => 'stu', 'Phvul.002G183300' => 'pvu', 'Phvul.008G235400' => 'pvu', 'Potri.004G091100' => 'ptr', 'Potri.008G131800' => 'ptr', 'Potri.010G110500' => 'ptr', 'Potri.017G124300' => 'ptr', 'Pp3c11_18730' => 'ppa', 'Pp3c7_7370' => 'ppa', 'Prupe.1G329900' => 'ppe', 'Prupe.3G161600' => 'ppe', 'Psat7g082560' => 'psa', 'Psat7g104280' => 'psa', 'PSO017G3508' => 'pso', 'PSO478G5318' => 'pso', 'QL02p057972' => 'qlo', 'QL03p031232' => 'qlo', 'QL03p033886' => 'qlo', 'QL93p0100_0380' => 'qlo', 'RcHm_v2.0_Chr3g0493091' => 'rch', 'RcHm_v2.0_Chr4g0443601' => 'rch', 'RcHm_v2.0_Chr5g0017851' => 'rch', 'Rhsim03G0110000' => 'rsi', 'Rhsim03G0182700' => 'rsi', 'Rhsim09G0094000' => 'rsi', 'Rhsim10G0176900' => 'rsi', 'Rhsim13G0132300' => 'rsi', 'Sabra04G0061300' => 'sbr', 'Sabra08G0100600' => 'sbr', 'Sabra10G0080800' => 'sbr', 'Sabra17G0102300' => 'sbr', 'Sabra17G0102400' => 'sbr', 'Sabra17G0105000' => 'sbr', 'SalBow2G0126' => 'sbo', 'SalBow2G2060' => 'sbo', 'SalBow8G0986' => 'sbo', 'Sc04g0005310' => 'sci', 'Sed0001736' => 'sed', 'Sed0027263' => 'sed', 'SEGI_03798' => 'sgi', 'SEGI_04813' => 'sgi', 'SEGI_22109' => 'sgi', 'SEGI_33231' => 'sgi', 'SGA_v2.0_scaffold234G43657' => 'sas', 'SGA_v2.0_scaffold50G18475' => 'sas', 'SGA_v2.0_scaffold50G18479' => 'sas', 'SHI04565' => 'shi', 'SHI46665' => 'shi', 'SHI46666' => 'shi', 'Solyc05g026540.3' => 'sly', 'Solyc11g011220.2' => 'sly', 'Sopen05g023000' => 'spe', 'Sopen11g006000' => 'spe', 'Sp1g20630' => 'spa', 'Sp3g30860' => 'spa', 'Sp3g31060' => 'spa', 'Sp5g25950' => 'spa', 'TAR371G0200' => 'tar', 'TAR374G0312' => 'tar', 'TAR622G0558' => 'tar', 'THA.LOC104823001' => 'tha', 'Thecc.01G198700' => 'tca', 'Thecc.02G287300' => 'tca', 'Thecc.04G116400' => 'tca', 'Thhalv10007115m.g' => 'esa', 'Thhalv10018292m.g' => 'esa', 'TPR.G17669' => 'tpr', 'TPR.G38617' => 'tpr', 'TPR.G38658' => 'tpr', 'TPR.G5140' => 'tpr', 'TWI53G0025' => 'twi', 'TWI53G1931' => 'twi', 'TWI74G1681' => 'twi', 'TWI77G0817' => 'twi', 'unitig_52.g17277' => 'ugi', 'unitig_62.g23738' => 'ugi', 'vmacro07690' => 'vma', 'vmacro10661' => 'vma', 'VMungo0251G1445' => 'vmu', 'VMungo0647G0260' => 'vmu', 'Zm00001eb125460' => 'zma', 'Zm00001eb335090' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001630', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001630' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '396', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001630' ) ), 'genes' => array( 'A02p16860' => 'bna', 'A05p09590' => 'bna', 'A06p16290' => 'bna', 'A06p19100' => 'bna', 'A07p13970' => 'bna', 'A07p37170' => 'bna', 'A07p37180' => 'bna', 'A09p11500' => 'bna', 'A09p41590' => 'bna', 'A09p68750' => 'bna', 'A09p68770' => 'bna', 'Aa31LG4G10220' => 'aar', 'Aa31LG7G7180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.252' => 'aag', 'Actinidia17215' => 'ach', 'Ah.02g127830' => 'amhyb', 'Ah.03g137340' => 'amhyb', 'Ah.12g060110' => 'amhyb', 'AL1G36840' => 'aly', 'AL2G10020' => 'aly', 'AL2G30210' => 'aly', 'AL358U10010' => 'aly', 'AL3G23430' => 'aly', 'AL3G39240' => 'aly', 'AL4G24460' => 'aly', 'AL4G36320' => 'aly', 'AL4G47590' => 'aly', 'AL5G10600' => 'aly', 'AL5G11480' => 'aly', 'AL5G13120' => 'aly', 'AL6G43120' => 'aly', 'AL8G20500' => 'aly', 'AL8G20510' => 'aly', 'AL8G20590' => 'aly', 'AL92U10020' => 'aly', 'Aqoxy3G00053' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6GC407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJUW9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEI9RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRPJ7L' => 'arhy', 'AT1G23170' => 'ath', 'AT1G70770' => 'ath', 'AT2G18070' => 'ath', 'AT3G11880' => 'ath', 'ATR0030G050' => 'atr', 'ATR0317G119' => 'atr', 'Atru.chr1.1897' => 'acertr', 'Atru.chr11.655' => 'acertr', 'AUR62014193' => 'cqu', 'AUR62039524' => 'cqu', 'BcaB01g02922' => 'bca', 'BcaB02g09367' => 'bca', 'BcaB02g09720' => 'bca', 'BcaB03g14163' => 'bca', 'BcaB03g14164' => 'bca', 'BcaB03g14927' => 'bca', 'BcaB03g14928' => 'bca', 'BcaB03g15557' => 'bca', 'BcaB03g16639' => 'bca', 'BcaB04g18189' => 'bca', 'BcaB04g18797' => 'bca', 'BcaB05g22201' => 'bca', 'BcaB05g23581' => 'bca', 'BcaB05g23680' => 'bca', 'BcaB05g23776' => 'bca', 'BcaB05g24611' => 'bca', 'BcaB06g26241' => 'bca', 'BcaB07g31320' => 'bca', 'BcaB07g31711' => 'bca', 'BcaB07g32184' => 'bca', 'BcaB07g32186' => 'bca', 'BcaC01g02598' => 'bca', 'BcaC01g04297' => 'bca', 'BcaC02g11735' => 'bca', 'BcaC03g15232' => 'bca', 'BcaC04g20348' => 'bca', 'BcaC04g22129' => 'bca', 'BcaC04g22952' => 'bca', 'BcaC05g26112' => 'bca', 'BcaC05g26224' => 'bca', 'BcaC07g39024' => 'bca', 'BcaC07g42244' => 'bca', 'BcaC07g42253' => 'bca', 'BcaC07g42254' => 'bca', 'BcaC07g42361' => 'bca', 'BcaC07g42364' => 'bca', 'BcaC07g42370' => 'bca', 'BcaC07g42388' => 'bca', 'BcaC08g46510' => 'bca', 'BcaC08g46512' => 'bca', 'BcaC08g46656' => 'bca', 'BcaC08g46657' => 'bca', 'BcaC08g46658' => 'bca', 'BolC2t08862H' => 'bol', 'BolC3t16581H' => 'bol', 'BolC3t18555H' => 'bol', 'BolC4t22835H' => 'bol', 'BolC4t25710H' => 'bol', 'BolC5t30788H' => 'bol', 'BolC5t30935H' => 'bol', 'BolC6t39543H' => 'bol', 'BolC6t39545H' => 'bol', 'BolC6t39669H' => 'bol', 'BolC6t39670H' => 'bol', 'BolC6t39671H' => 'bol', 'BolC6t39672H' => 'bol', 'BolC6t39674H' => 'bol', 'BolC8t49634H' => 'bol', 'BolC8t52847H' => 'bol', 'BolC8t52860H' => 'bol', 'BolC9t54243H' => 'bol', 'BolC9t57339H' => 'bol', 'BraA02t06740Z' => 'bra', 'BraA03t10631Z' => 'bra', 'BraA04t16207Z' => 'bra', 'BraA05t19912Z' => 'bra', 'BraA05t21404Z' => 'bra', 'BraA06t24731Z' => 'bra', 'BraA06t24993Z' => 'bra', 'BraA07t29153Z' => 'bra', 'BraA07t30731Z' => 'bra', 'BraA07t31279Z' => 'bra', 'BraA08t33057Z' => 'bra', 'BraA09t36790Z' => 'bra', 'BraA09t39650Z' => 'bra', 'BraA09t42214Z' => 'bra', 'C02p28180' => 'bna', 'C02p29700' => 'bna', 'C04p11860' => 'bna', 'C04p11870' => 'bna', 'C05p20900' => 'bna', 'C05p20910' => 'bna', 'C05p20920' => 'bna', 'C05p22380' => 'bna', 'C06p44840' => 'bna', 'C06p44860' => 'bna', 'C06p46150' => 'bna', 'C06p46200' => 'bna', 'C06p46240' => 'bna', 'C06p46250' => 'bna', 'C06p46270' => 'bna', 'C06p46280' => 'bna', 'C06p46290' => 'bna', 'C08p11190' => 'bna', 'C08p19980' => 'bna', 'C08p52770' => 'bna', 'C08p53320' => 'bna', 'C09p13520' => 'bna', 'C09p44620' => 'bna', 'C09p67410' => 'bna', 'CAN.G1027.1' => 'can', 'CAN.G222.9' => 'can', 'CANSAT01G0343' => 'cansat', 'CANSAT01G1495' => 'cansat', 'CARHR023630' => 'chi', 'CARHR030430' => 'chi', 'CARHR064030' => 'chi', 'CARHR108790' => 'chi', 'CARHR108800' => 'chi', 'CARHR111720' => 'chi', 'CARHR128760' => 'chi', 'CARHR133670' => 'chi', 'CARHR133680' => 'chi', 'CARHR184760' => 'chi', 'CARHR234650' => 'chi', 'CARHR237900' => 'chi', 'CARHR237910' => 'chi', 'CARHR254720' => 'chi', 'CARHR289260' => 'chi', 'Carub.0001s2274' => 'cru', 'Carub.0002s1751' => 'cru', 'Carub.0004s1079' => 'cru', 'Carub.0004s1259' => 'cru', 'Carub.0005s0085' => 'cru', 'Carub.0007s3365' => 'cru', 'Carub.0007s3366' => 'cru', 'Carub.0007s3370' => 'cru', 'Carub.0007s3371' => 'cru', 'Ca_11593_v3' => 'car', 'CBR_g33920' => 'cbr', 'Cc06_g23100' => 'ccan', 'Cc07_g13540' => 'ccan', 'Cc11_g08280' => 'ccan', 'CDE02G0948' => 'cde', 'CDE08G1097' => 'cde', 'Cfa007819' => 'cfa', 'Cfa014978' => 'cfa', 'Ciclev10011364m.g' => 'ccl', 'Ciclev10014686m.g' => 'ccl', 'CiPaw.03G071300' => 'cil', 'CiPaw.04G047100' => 'cil', 'CiPaw.05G193800' => 'cil', 'ClCG07G005980' => 'cla', 'COL.COLO4_09035' => 'col', 'COL.COLO4_11968' => 'col', 'COL.COLO4_13102' => 'col', 'Cpa.g.sc1084.3' => 'cpa', 'Cpa.g.sc116.51' => 'cpa', 'CsaV3_5G014690' => 'csa', 'CSS0014868' => 'camsi', 'DCAR_007312' => 'dca', 'DCAR_030239' => 'dca', 'Dinv14577' => 'din', 'Dinv18614' => 'din', 'Dinv19032' => 'din', 'Dinv26230' => 'din', 'Dinv28043' => 'din', 'Dinv28211' => 'din', 'Duzib133G1256' => 'dzi', 'Duzib211G0133' => 'dzi', 'Duzib251G0655' => 'dzi', 'Duzib268G1042' => 'dzi', 'ECA233G3051' => 'eca', 'EL10Ac6g14195' => 'bvu', 'Eucgr.F02850' => 'egr', 'FAN12G0350' => 'fan', 'FAN17G2556' => 'fan', 'FAN19G2032' => 'fan', 'FAN22G0549' => 'fan', 'FAN23G2186' => 'fan', 'FAN23G2595' => 'fan', 'FAN26G1532' => 'fan', 'FAN28G0984' => 'fan', 'FAN28G2761' => 'fan', 'FvH4_1g28730' => 'fve', 'FvH4_4g34080' => 'fve', 'Glyma.02G245500' => 'gma', 'Glyma.05G139900' => 'gma', 'Glyma.08G095200' => 'gma', 'Glyma.14G215700' => 'gma', 'Gohir.A01G150100' => 'ghi', 'Gohir.A04G141800' => 'ghi', 'Gohir.A07G078500' => 'ghi', 'Gohir.D01G143400' => 'ghi', 'Gohir.D04G187100' => 'ghi', 'Gohir.D07G083600' => 'ghi', 'Gorai.001G089200' => 'gra', 'Gorai.002G176900' => 'gra', 'Gorai.012G181300' => 'gra', 'GSVIVG01011708001' => 'vvi', 'GSVIVG01030770001' => 'vvi', 'HanXRQChr09g0258881' => 'han', 'HanXRQChr12g0363531' => 'han', 'HanXRQChr16g0529811' => 'han', 'HanXRQChr17g0566831' => 'han', 'Haze_10943' => 'cav', 'Haze_10944' => 'cav', 'Haze_14256' => 'cav', 'Hma1.2p1_0120F.1_g057100' => 'hma', 'Hma1.2p1_0330F.1_g127380' => 'hma', 'Hma1.2p1_0346F.1_g131550' => 'hma', 'Hma1.2p1_0524F.1_g172390' => 'hma', 'Hma1.2p1_1541F.1_g289690' => 'hma', 'HPP92_000178' => 'vpl', 'HPP92_021860' => 'vpl', 'Hund13110' => 'sun', 'Hund24965' => 'sun', 'Lalb_Chr00c06g0404611' => 'lal', 'Lalb_Chr00c06g0404621' => 'lal', 'Lalb_Chr00c06g0404631' => 'lal', 'Lalb_Chr07g0187721' => 'lal', 'Lalb_Chr10g0104401' => 'lal', 'Lalb_Chr12g0206771' => 'lal', 'Lalb_Chr13g0293721' => 'lal', 'Lj3A867T57' => 'lonja', 'Lj4A264T54' => 'lonja', 'Lj4g0004401' => 'lja', 'Lj6A742T65' => 'lonja', 'LjContig00141g0001694' => 'lja', 'Lsat_1_v5_gn_0_33361' => 'lsa', 'Lsat_1_v5_gn_0_36040' => 'lsa', 'Lsat_1_v5_gn_3_124180' => 'lsa', 'Lsat_1_v5_gn_3_128140' => 'lsa', 'Lsat_1_v5_gn_4_13621' => 'lsa', 'Lsat_1_v5_gn_5_34340' => 'lsa', 'Lsat_1_v5_gn_6_37120' => 'lsa', 'Lsat_1_v5_gn_7_69360' => 'lsa', 'Lsat_1_v5_gn_8_115241' => 'lsa', 'Lsat_1_v5_gn_8_14100' => 'lsa', 'Lsat_1_v5_gn_8_44220' => 'lsa', 'Manes.02G076500' => 'mes', 'Manes.15G131000' => 'mes', 'Manes.17G080400' => 'mes', 'Mapoly0031s0122' => 'mpo', 'MD00G1185200' => 'mdo', 'MD09G1264000' => 'mdo', 'MD13G1022000' => 'mdo', 'MD16G1023000' => 'mdo', 'MELO3C026422.2' => 'cme', 'Migut.E00447' => 'egut', 'Migut.L00397' => 'egut', 'MSTRG.13605' => 'ama', 'MSTRG.2151' => 'ama', 'Nitab4.5_0000135g0070' => 'nta', 'Nitab4.5_0000201g0300' => 'nta', 'Nitab4.5_0003406g0020' => 'nta', 'Nn1g04255' => 'nnu', 'Nn2g13629' => 'nnu', 'Nn2g13630' => 'nnu', 'Nn3g18292' => 'nnu', 'Nn4g24249' => 'nnu', 'Oeu014046.2' => 'oeu', 'Oeu032261.1' => 'oeu', 'Oeu059516.1' => 'oeu', 'Os01g0128400' => 'osa', 'Peaxi162Scf00008g00213' => 'pax', 'Peaxi162Scf00188g00047' => 'pax', 'Peaxi162Scf00305g01116' => 'pax', 'Peaxi162Scf00376g00120' => 'pax', 'Peaxi162Scf00980g00013' => 'pax', 'Peaxi162Scf00980g10015' => 'pax', 'PGR004G1776' => 'pgr', 'PGR042G2918' => 'pgr', 'PGSC0003DMG400015690' => 'stu', 'PGSC0003DMG400015904' => 'stu', 'Phvul.002G183300' => 'pvu', 'Phvul.008G235400' => 'pvu', 'Potri.004G091100' => 'ptr', 'Potri.008G131800' => 'ptr', 'Potri.010G110500' => 'ptr', 'Potri.017G124300' => 'ptr', 'Pp3c11_18730' => 'ppa', 'Pp3c7_7370' => 'ppa', 'Prupe.1G329900' => 'ppe', 'Prupe.3G161600' => 'ppe', 'Psat7g082560' => 'psa', 'Psat7g104280' => 'psa', 'PSO017G3508' => 'pso', 'PSO478G5318' => 'pso', 'QL02p057972' => 'qlo', 'QL03p031232' => 'qlo', 'QL03p033886' => 'qlo', 'QL93p0100_0380' => 'qlo', 'RcHm_v2.0_Chr3g0493091' => 'rch', 'RcHm_v2.0_Chr4g0443601' => 'rch', 'RcHm_v2.0_Chr5g0017851' => 'rch', 'Rhsim03G0110000' => 'rsi', 'Rhsim03G0182700' => 'rsi', 'Rhsim09G0094000' => 'rsi', 'Rhsim10G0176900' => 'rsi', 'Rhsim13G0132300' => 'rsi', 'Sabra04G0061300' => 'sbr', 'Sabra08G0100600' => 'sbr', 'Sabra10G0080800' => 'sbr', 'Sabra17G0102300' => 'sbr', 'Sabra17G0102400' => 'sbr', 'Sabra17G0105000' => 'sbr', 'SalBow2G0126' => 'sbo', 'SalBow2G2060' => 'sbo', 'SalBow8G0986' => 'sbo', 'Sc04g0005310' => 'sci', 'Sed0001736' => 'sed', 'Sed0027263' => 'sed', 'SEGI_03798' => 'sgi', 'SEGI_04813' => 'sgi', 'SEGI_22109' => 'sgi', 'SEGI_33231' => 'sgi', 'SGA_v2.0_scaffold234G43657' => 'sas', 'SGA_v2.0_scaffold50G18475' => 'sas', 'SGA_v2.0_scaffold50G18479' => 'sas', 'SHI04565' => 'shi', 'SHI46665' => 'shi', 'SHI46666' => 'shi', 'Solyc05g026540.3' => 'sly', 'Solyc11g011220.2' => 'sly', 'Sopen05g023000' => 'spe', 'Sopen11g006000' => 'spe', 'Sp1g20630' => 'spa', 'Sp3g30860' => 'spa', 'Sp3g31060' => 'spa', 'Sp5g25950' => 'spa', 'TAR371G0200' => 'tar', 'TAR374G0312' => 'tar', 'TAR622G0558' => 'tar', 'THA.LOC104823001' => 'tha', 'Thecc.01G198700' => 'tca', 'Thecc.02G287300' => 'tca', 'Thecc.04G116400' => 'tca', 'Thhalv10007115m.g' => 'esa', 'Thhalv10018292m.g' => 'esa', 'TPR.G17669' => 'tpr', 'TPR.G38617' => 'tpr', 'TPR.G38658' => 'tpr', 'TPR.G5140' => 'tpr', 'TWI53G0025' => 'twi', 'TWI53G1931' => 'twi', 'TWI74G1681' => 'twi', 'TWI77G0817' => 'twi', 'unitig_52.g17277' => 'ugi', 'unitig_62.g23738' => 'ugi', 'vmacro07690' => 'vma', 'vmacro10661' => 'vma', 'VMungo0251G1445' => 'vmu', 'VMungo0647G0260' => 'vmu', 'Zm00001eb125460' => 'zma', 'Zm00001eb335090' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001630' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001630' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001630' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001630' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '396', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p16860' => 'bna', 'A05p09590' => 'bna', 'A06p16290' => 'bna', 'A06p19100' => 'bna', 'A07p13970' => 'bna', 'A07p37170' => 'bna', 'A07p37180' => 'bna', 'A09p11500' => 'bna', 'A09p41590' => 'bna', 'A09p68750' => 'bna', 'A09p68770' => 'bna', 'Aa31LG4G10220' => 'aar', 'Aa31LG7G7180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.252' => 'aag', 'Actinidia17215' => 'ach', 'Ah.02g127830' => 'amhyb', 'Ah.03g137340' => 'amhyb', 'Ah.12g060110' => 'amhyb', 'AL1G36840' => 'aly', 'AL2G10020' => 'aly', 'AL2G30210' => 'aly', 'AL358U10010' => 'aly', 'AL3G23430' => 'aly', 'AL3G39240' => 'aly', 'AL4G24460' => 'aly', 'AL4G36320' => 'aly', 'AL4G47590' => 'aly', 'AL5G10600' => 'aly', 'AL5G11480' => 'aly', 'AL5G13120' => 'aly', 'AL6G43120' => 'aly', 'AL8G20500' => 'aly', 'AL8G20510' => 'aly', 'AL8G20590' => 'aly', 'AL92U10020' => 'aly', 'Aqoxy3G00053' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6GC407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJUW9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEI9RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRPJ7L' => 'arhy', 'AT1G23170' => 'ath', 'AT1G70770' => 'ath', 'AT2G18070' => 'ath', 'AT3G11880' => 'ath', 'ATR0030G050' => 'atr', 'ATR0317G119' => 'atr', 'Atru.chr1.1897' => 'acertr', 'Atru.chr11.655' => 'acertr', 'AUR62014193' => 'cqu', 'AUR62039524' => 'cqu', 'BcaB01g02922' => 'bca', 'BcaB02g09367' => 'bca', 'BcaB02g09720' => 'bca', 'BcaB03g14163' => 'bca', 'BcaB03g14164' => 'bca', 'BcaB03g14927' => 'bca', 'BcaB03g14928' => 'bca', 'BcaB03g15557' => 'bca', 'BcaB03g16639' => 'bca', 'BcaB04g18189' => 'bca', 'BcaB04g18797' => 'bca', 'BcaB05g22201' => 'bca', 'BcaB05g23581' => 'bca', 'BcaB05g23680' => 'bca', 'BcaB05g23776' => 'bca', 'BcaB05g24611' => 'bca', 'BcaB06g26241' => 'bca', 'BcaB07g31320' => 'bca', 'BcaB07g31711' => 'bca', 'BcaB07g32184' => 'bca', 'BcaB07g32186' => 'bca', 'BcaC01g02598' => 'bca', 'BcaC01g04297' => 'bca', 'BcaC02g11735' => 'bca', 'BcaC03g15232' => 'bca', 'BcaC04g20348' => 'bca', 'BcaC04g22129' => 'bca', 'BcaC04g22952' => 'bca', 'BcaC05g26112' => 'bca', 'BcaC05g26224' => 'bca', 'BcaC07g39024' => 'bca', 'BcaC07g42244' => 'bca', 'BcaC07g42253' => 'bca', 'BcaC07g42254' => 'bca', 'BcaC07g42361' => 'bca', 'BcaC07g42364' => 'bca', 'BcaC07g42370' => 'bca', 'BcaC07g42388' => 'bca', 'BcaC08g46510' => 'bca', 'BcaC08g46512' => 'bca', 'BcaC08g46656' => 'bca', 'BcaC08g46657' => 'bca', 'BcaC08g46658' => 'bca', 'BolC2t08862H' => 'bol', 'BolC3t16581H' => 'bol', 'BolC3t18555H' => 'bol', 'BolC4t22835H' => 'bol', 'BolC4t25710H' => 'bol', 'BolC5t30788H' => 'bol', 'BolC5t30935H' => 'bol', 'BolC6t39543H' => 'bol', 'BolC6t39545H' => 'bol', 'BolC6t39669H' => 'bol', 'BolC6t39670H' => 'bol', 'BolC6t39671H' => 'bol', 'BolC6t39672H' => 'bol', 'BolC6t39674H' => 'bol', 'BolC8t49634H' => 'bol', 'BolC8t52847H' => 'bol', 'BolC8t52860H' => 'bol', 'BolC9t54243H' => 'bol', 'BolC9t57339H' => 'bol', 'BraA02t06740Z' => 'bra', 'BraA03t10631Z' => 'bra', 'BraA04t16207Z' => 'bra', 'BraA05t19912Z' => 'bra', 'BraA05t21404Z' => 'bra', 'BraA06t24731Z' => 'bra', 'BraA06t24993Z' => 'bra', 'BraA07t29153Z' => 'bra', 'BraA07t30731Z' => 'bra', 'BraA07t31279Z' => 'bra', 'BraA08t33057Z' => 'bra', 'BraA09t36790Z' => 'bra', 'BraA09t39650Z' => 'bra', 'BraA09t42214Z' => 'bra', 'C02p28180' => 'bna', 'C02p29700' => 'bna', 'C04p11860' => 'bna', 'C04p11870' => 'bna', 'C05p20900' => 'bna', 'C05p20910' => 'bna', 'C05p20920' => 'bna', 'C05p22380' => 'bna', 'C06p44840' => 'bna', 'C06p44860' => 'bna', 'C06p46150' => 'bna', 'C06p46200' => 'bna', 'C06p46240' => 'bna', 'C06p46250' => 'bna', 'C06p46270' => 'bna', 'C06p46280' => 'bna', 'C06p46290' => 'bna', 'C08p11190' => 'bna', 'C08p19980' => 'bna', 'C08p52770' => 'bna', 'C08p53320' => 'bna', 'C09p13520' => 'bna', 'C09p44620' => 'bna', 'C09p67410' => 'bna', 'CAN.G1027.1' => 'can', 'CAN.G222.9' => 'can', 'CANSAT01G0343' => 'cansat', 'CANSAT01G1495' => 'cansat', 'CARHR023630' => 'chi', 'CARHR030430' => 'chi', 'CARHR064030' => 'chi', 'CARHR108790' => 'chi', 'CARHR108800' => 'chi', 'CARHR111720' => 'chi', 'CARHR128760' => 'chi', 'CARHR133670' => 'chi', 'CARHR133680' => 'chi', 'CARHR184760' => 'chi', 'CARHR234650' => 'chi', 'CARHR237900' => 'chi', 'CARHR237910' => 'chi', 'CARHR254720' => 'chi', 'CARHR289260' => 'chi', 'Carub.0001s2274' => 'cru', 'Carub.0002s1751' => 'cru', 'Carub.0004s1079' => 'cru', 'Carub.0004s1259' => 'cru', 'Carub.0005s0085' => 'cru', 'Carub.0007s3365' => 'cru', 'Carub.0007s3366' => 'cru', 'Carub.0007s3370' => 'cru', 'Carub.0007s3371' => 'cru', 'Ca_11593_v3' => 'car', 'CBR_g33920' => 'cbr', 'Cc06_g23100' => 'ccan', 'Cc07_g13540' => 'ccan', 'Cc11_g08280' => 'ccan', 'CDE02G0948' => 'cde', 'CDE08G1097' => 'cde', 'Cfa007819' => 'cfa', 'Cfa014978' => 'cfa', 'Ciclev10011364m.g' => 'ccl', 'Ciclev10014686m.g' => 'ccl', 'CiPaw.03G071300' => 'cil', 'CiPaw.04G047100' => 'cil', 'CiPaw.05G193800' => 'cil', 'ClCG07G005980' => 'cla', 'COL.COLO4_09035' => 'col', 'COL.COLO4_11968' => 'col', 'COL.COLO4_13102' => 'col', 'Cpa.g.sc1084.3' => 'cpa', 'Cpa.g.sc116.51' => 'cpa', 'CsaV3_5G014690' => 'csa', 'CSS0014868' => 'camsi', 'DCAR_007312' => 'dca', 'DCAR_030239' => 'dca', 'Dinv14577' => 'din', 'Dinv18614' => 'din', 'Dinv19032' => 'din', 'Dinv26230' => 'din', 'Dinv28043' => 'din', 'Dinv28211' => 'din', 'Duzib133G1256' => 'dzi', 'Duzib211G0133' => 'dzi', 'Duzib251G0655' => 'dzi', 'Duzib268G1042' => 'dzi', 'ECA233G3051' => 'eca', 'EL10Ac6g14195' => 'bvu', 'Eucgr.F02850' => 'egr', 'FAN12G0350' => 'fan', 'FAN17G2556' => 'fan', 'FAN19G2032' => 'fan', 'FAN22G0549' => 'fan', 'FAN23G2186' => 'fan', 'FAN23G2595' => 'fan', 'FAN26G1532' => 'fan', 'FAN28G0984' => 'fan', 'FAN28G2761' => 'fan', 'FvH4_1g28730' => 'fve', 'FvH4_4g34080' => 'fve', 'Glyma.02G245500' => 'gma', 'Glyma.05G139900' => 'gma', 'Glyma.08G095200' => 'gma', 'Glyma.14G215700' => 'gma', 'Gohir.A01G150100' => 'ghi', 'Gohir.A04G141800' => 'ghi', 'Gohir.A07G078500' => 'ghi', 'Gohir.D01G143400' => 'ghi', 'Gohir.D04G187100' => 'ghi', 'Gohir.D07G083600' => 'ghi', 'Gorai.001G089200' => 'gra', 'Gorai.002G176900' => 'gra', 'Gorai.012G181300' => 'gra', 'GSVIVG01011708001' => 'vvi', 'GSVIVG01030770001' => 'vvi', 'HanXRQChr09g0258881' => 'han', 'HanXRQChr12g0363531' => 'han', 'HanXRQChr16g0529811' => 'han', 'HanXRQChr17g0566831' => 'han', 'Haze_10943' => 'cav', 'Haze_10944' => 'cav', 'Haze_14256' => 'cav', 'Hma1.2p1_0120F.1_g057100' => 'hma', 'Hma1.2p1_0330F.1_g127380' => 'hma', 'Hma1.2p1_0346F.1_g131550' => 'hma', 'Hma1.2p1_0524F.1_g172390' => 'hma', 'Hma1.2p1_1541F.1_g289690' => 'hma', 'HPP92_000178' => 'vpl', 'HPP92_021860' => 'vpl', 'Hund13110' => 'sun', 'Hund24965' => 'sun', 'Lalb_Chr00c06g0404611' => 'lal', 'Lalb_Chr00c06g0404621' => 'lal', 'Lalb_Chr00c06g0404631' => 'lal', 'Lalb_Chr07g0187721' => 'lal', 'Lalb_Chr10g0104401' => 'lal', 'Lalb_Chr12g0206771' => 'lal', 'Lalb_Chr13g0293721' => 'lal', 'Lj3A867T57' => 'lonja', 'Lj4A264T54' => 'lonja', 'Lj4g0004401' => 'lja', 'Lj6A742T65' => 'lonja', 'LjContig00141g0001694' => 'lja', 'Lsat_1_v5_gn_0_33361' => 'lsa', 'Lsat_1_v5_gn_0_36040' => 'lsa', 'Lsat_1_v5_gn_3_124180' => 'lsa', 'Lsat_1_v5_gn_3_128140' => 'lsa', 'Lsat_1_v5_gn_4_13621' => 'lsa', 'Lsat_1_v5_gn_5_34340' => 'lsa', 'Lsat_1_v5_gn_6_37120' => 'lsa', 'Lsat_1_v5_gn_7_69360' => 'lsa', 'Lsat_1_v5_gn_8_115241' => 'lsa', 'Lsat_1_v5_gn_8_14100' => 'lsa', 'Lsat_1_v5_gn_8_44220' => 'lsa', 'Manes.02G076500' => 'mes', 'Manes.15G131000' => 'mes', 'Manes.17G080400' => 'mes', 'Mapoly0031s0122' => 'mpo', 'MD00G1185200' => 'mdo', 'MD09G1264000' => 'mdo', 'MD13G1022000' => 'mdo', 'MD16G1023000' => 'mdo', 'MELO3C026422.2' => 'cme', 'Migut.E00447' => 'egut', 'Migut.L00397' => 'egut', 'MSTRG.13605' => 'ama', 'MSTRG.2151' => 'ama', 'Nitab4.5_0000135g0070' => 'nta', 'Nitab4.5_0000201g0300' => 'nta', 'Nitab4.5_0003406g0020' => 'nta', 'Nn1g04255' => 'nnu', 'Nn2g13629' => 'nnu', 'Nn2g13630' => 'nnu', 'Nn3g18292' => 'nnu', 'Nn4g24249' => 'nnu', 'Oeu014046.2' => 'oeu', 'Oeu032261.1' => 'oeu', 'Oeu059516.1' => 'oeu', 'Os01g0128400' => 'osa', 'Peaxi162Scf00008g00213' => 'pax', 'Peaxi162Scf00188g00047' => 'pax', 'Peaxi162Scf00305g01116' => 'pax', 'Peaxi162Scf00376g00120' => 'pax', 'Peaxi162Scf00980g00013' => 'pax', 'Peaxi162Scf00980g10015' => 'pax', 'PGR004G1776' => 'pgr', 'PGR042G2918' => 'pgr', 'PGSC0003DMG400015690' => 'stu', 'PGSC0003DMG400015904' => 'stu', 'Phvul.002G183300' => 'pvu', 'Phvul.008G235400' => 'pvu', 'Potri.004G091100' => 'ptr', 'Potri.008G131800' => 'ptr', 'Potri.010G110500' => 'ptr', 'Potri.017G124300' => 'ptr', 'Pp3c11_18730' => 'ppa', 'Pp3c7_7370' => 'ppa', 'Prupe.1G329900' => 'ppe', 'Prupe.3G161600' => 'ppe', 'Psat7g082560' => 'psa', 'Psat7g104280' => 'psa', 'PSO017G3508' => 'pso', 'PSO478G5318' => 'pso', 'QL02p057972' => 'qlo', 'QL03p031232' => 'qlo', 'QL03p033886' => 'qlo', 'QL93p0100_0380' => 'qlo', 'RcHm_v2.0_Chr3g0493091' => 'rch', 'RcHm_v2.0_Chr4g0443601' => 'rch', 'RcHm_v2.0_Chr5g0017851' => 'rch', 'Rhsim03G0110000' => 'rsi', 'Rhsim03G0182700' => 'rsi', 'Rhsim09G0094000' => 'rsi', 'Rhsim10G0176900' => 'rsi', 'Rhsim13G0132300' => 'rsi', 'Sabra04G0061300' => 'sbr', 'Sabra08G0100600' => 'sbr', 'Sabra10G0080800' => 'sbr', 'Sabra17G0102300' => 'sbr', 'Sabra17G0102400' => 'sbr', 'Sabra17G0105000' => 'sbr', 'SalBow2G0126' => 'sbo', 'SalBow2G2060' => 'sbo', 'SalBow8G0986' => 'sbo', 'Sc04g0005310' => 'sci', 'Sed0001736' => 'sed', 'Sed0027263' => 'sed', 'SEGI_03798' => 'sgi', 'SEGI_04813' => 'sgi', 'SEGI_22109' => 'sgi', 'SEGI_33231' => 'sgi', 'SGA_v2.0_scaffold234G43657' => 'sas', 'SGA_v2.0_scaffold50G18475' => 'sas', 'SGA_v2.0_scaffold50G18479' => 'sas', 'SHI04565' => 'shi', 'SHI46665' => 'shi', 'SHI46666' => 'shi', 'Solyc05g026540.3' => 'sly', 'Solyc11g011220.2' => 'sly', 'Sopen05g023000' => 'spe', 'Sopen11g006000' => 'spe', 'Sp1g20630' => 'spa', 'Sp3g30860' => 'spa', 'Sp3g31060' => 'spa', 'Sp5g25950' => 'spa', 'TAR371G0200' => 'tar', 'TAR374G0312' => 'tar', 'TAR622G0558' => 'tar', 'THA.LOC104823001' => 'tha', 'Thecc.01G198700' => 'tca', 'Thecc.02G287300' => 'tca', 'Thecc.04G116400' => 'tca', 'Thhalv10007115m.g' => 'esa', 'Thhalv10018292m.g' => 'esa', 'TPR.G17669' => 'tpr', 'TPR.G38617' => 'tpr', 'TPR.G38658' => 'tpr', 'TPR.G5140' => 'tpr', 'TWI53G0025' => 'twi', 'TWI53G1931' => 'twi', 'TWI74G1681' => 'twi', 'TWI77G0817' => 'twi', 'unitig_52.g17277' => 'ugi', 'unitig_62.g23738' => 'ugi', 'vmacro07690' => 'vma', 'vmacro10661' => 'vma', 'VMungo0251G1445' => 'vmu', 'VMungo0647G0260' => 'vmu', 'Zm00001eb125460' => 'zma', 'Zm00001eb335090' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001630', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001630' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '396', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001630' ) ), 'genes' => array( 'A02p16860' => 'bna', 'A05p09590' => 'bna', 'A06p16290' => 'bna', 'A06p19100' => 'bna', 'A07p13970' => 'bna', 'A07p37170' => 'bna', 'A07p37180' => 'bna', 'A09p11500' => 'bna', 'A09p41590' => 'bna', 'A09p68750' => 'bna', 'A09p68770' => 'bna', 'Aa31LG4G10220' => 'aar', 'Aa31LG7G7180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.252' => 'aag', 'Actinidia17215' => 'ach', 'Ah.02g127830' => 'amhyb', 'Ah.03g137340' => 'amhyb', 'Ah.12g060110' => 'amhyb', 'AL1G36840' => 'aly', 'AL2G10020' => 'aly', 'AL2G30210' => 'aly', 'AL358U10010' => 'aly', 'AL3G23430' => 'aly', 'AL3G39240' => 'aly', 'AL4G24460' => 'aly', 'AL4G36320' => 'aly', 'AL4G47590' => 'aly', 'AL5G10600' => 'aly', 'AL5G11480' => 'aly', 'AL5G13120' => 'aly', 'AL6G43120' => 'aly', 'AL8G20500' => 'aly', 'AL8G20510' => 'aly', 'AL8G20590' => 'aly', 'AL92U10020' => 'aly', 'Aqoxy3G00053' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6GC407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJUW9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEI9RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRPJ7L' => 'arhy', 'AT1G23170' => 'ath', 'AT1G70770' => 'ath', 'AT2G18070' => 'ath', 'AT3G11880' => 'ath', 'ATR0030G050' => 'atr', 'ATR0317G119' => 'atr', 'Atru.chr1.1897' => 'acertr', 'Atru.chr11.655' => 'acertr', 'AUR62014193' => 'cqu', 'AUR62039524' => 'cqu', 'BcaB01g02922' => 'bca', 'BcaB02g09367' => 'bca', 'BcaB02g09720' => 'bca', 'BcaB03g14163' => 'bca', 'BcaB03g14164' => 'bca', 'BcaB03g14927' => 'bca', 'BcaB03g14928' => 'bca', 'BcaB03g15557' => 'bca', 'BcaB03g16639' => 'bca', 'BcaB04g18189' => 'bca', 'BcaB04g18797' => 'bca', 'BcaB05g22201' => 'bca', 'BcaB05g23581' => 'bca', 'BcaB05g23680' => 'bca', 'BcaB05g23776' => 'bca', 'BcaB05g24611' => 'bca', 'BcaB06g26241' => 'bca', 'BcaB07g31320' => 'bca', 'BcaB07g31711' => 'bca', 'BcaB07g32184' => 'bca', 'BcaB07g32186' => 'bca', 'BcaC01g02598' => 'bca', 'BcaC01g04297' => 'bca', 'BcaC02g11735' => 'bca', 'BcaC03g15232' => 'bca', 'BcaC04g20348' => 'bca', 'BcaC04g22129' => 'bca', 'BcaC04g22952' => 'bca', 'BcaC05g26112' => 'bca', 'BcaC05g26224' => 'bca', 'BcaC07g39024' => 'bca', 'BcaC07g42244' => 'bca', 'BcaC07g42253' => 'bca', 'BcaC07g42254' => 'bca', 'BcaC07g42361' => 'bca', 'BcaC07g42364' => 'bca', 'BcaC07g42370' => 'bca', 'BcaC07g42388' => 'bca', 'BcaC08g46510' => 'bca', 'BcaC08g46512' => 'bca', 'BcaC08g46656' => 'bca', 'BcaC08g46657' => 'bca', 'BcaC08g46658' => 'bca', 'BolC2t08862H' => 'bol', 'BolC3t16581H' => 'bol', 'BolC3t18555H' => 'bol', 'BolC4t22835H' => 'bol', 'BolC4t25710H' => 'bol', 'BolC5t30788H' => 'bol', 'BolC5t30935H' => 'bol', 'BolC6t39543H' => 'bol', 'BolC6t39545H' => 'bol', 'BolC6t39669H' => 'bol', 'BolC6t39670H' => 'bol', 'BolC6t39671H' => 'bol', 'BolC6t39672H' => 'bol', 'BolC6t39674H' => 'bol', 'BolC8t49634H' => 'bol', 'BolC8t52847H' => 'bol', 'BolC8t52860H' => 'bol', 'BolC9t54243H' => 'bol', 'BolC9t57339H' => 'bol', 'BraA02t06740Z' => 'bra', 'BraA03t10631Z' => 'bra', 'BraA04t16207Z' => 'bra', 'BraA05t19912Z' => 'bra', 'BraA05t21404Z' => 'bra', 'BraA06t24731Z' => 'bra', 'BraA06t24993Z' => 'bra', 'BraA07t29153Z' => 'bra', 'BraA07t30731Z' => 'bra', 'BraA07t31279Z' => 'bra', 'BraA08t33057Z' => 'bra', 'BraA09t36790Z' => 'bra', 'BraA09t39650Z' => 'bra', 'BraA09t42214Z' => 'bra', 'C02p28180' => 'bna', 'C02p29700' => 'bna', 'C04p11860' => 'bna', 'C04p11870' => 'bna', 'C05p20900' => 'bna', 'C05p20910' => 'bna', 'C05p20920' => 'bna', 'C05p22380' => 'bna', 'C06p44840' => 'bna', 'C06p44860' => 'bna', 'C06p46150' => 'bna', 'C06p46200' => 'bna', 'C06p46240' => 'bna', 'C06p46250' => 'bna', 'C06p46270' => 'bna', 'C06p46280' => 'bna', 'C06p46290' => 'bna', 'C08p11190' => 'bna', 'C08p19980' => 'bna', 'C08p52770' => 'bna', 'C08p53320' => 'bna', 'C09p13520' => 'bna', 'C09p44620' => 'bna', 'C09p67410' => 'bna', 'CAN.G1027.1' => 'can', 'CAN.G222.9' => 'can', 'CANSAT01G0343' => 'cansat', 'CANSAT01G1495' => 'cansat', 'CARHR023630' => 'chi', 'CARHR030430' => 'chi', 'CARHR064030' => 'chi', 'CARHR108790' => 'chi', 'CARHR108800' => 'chi', 'CARHR111720' => 'chi', 'CARHR128760' => 'chi', 'CARHR133670' => 'chi', 'CARHR133680' => 'chi', 'CARHR184760' => 'chi', 'CARHR234650' => 'chi', 'CARHR237900' => 'chi', 'CARHR237910' => 'chi', 'CARHR254720' => 'chi', 'CARHR289260' => 'chi', 'Carub.0001s2274' => 'cru', 'Carub.0002s1751' => 'cru', 'Carub.0004s1079' => 'cru', 'Carub.0004s1259' => 'cru', 'Carub.0005s0085' => 'cru', 'Carub.0007s3365' => 'cru', 'Carub.0007s3366' => 'cru', 'Carub.0007s3370' => 'cru', 'Carub.0007s3371' => 'cru', 'Ca_11593_v3' => 'car', 'CBR_g33920' => 'cbr', 'Cc06_g23100' => 'ccan', 'Cc07_g13540' => 'ccan', 'Cc11_g08280' => 'ccan', 'CDE02G0948' => 'cde', 'CDE08G1097' => 'cde', 'Cfa007819' => 'cfa', 'Cfa014978' => 'cfa', 'Ciclev10011364m.g' => 'ccl', 'Ciclev10014686m.g' => 'ccl', 'CiPaw.03G071300' => 'cil', 'CiPaw.04G047100' => 'cil', 'CiPaw.05G193800' => 'cil', 'ClCG07G005980' => 'cla', 'COL.COLO4_09035' => 'col', 'COL.COLO4_11968' => 'col', 'COL.COLO4_13102' => 'col', 'Cpa.g.sc1084.3' => 'cpa', 'Cpa.g.sc116.51' => 'cpa', 'CsaV3_5G014690' => 'csa', 'CSS0014868' => 'camsi', 'DCAR_007312' => 'dca', 'DCAR_030239' => 'dca', 'Dinv14577' => 'din', 'Dinv18614' => 'din', 'Dinv19032' => 'din', 'Dinv26230' => 'din', 'Dinv28043' => 'din', 'Dinv28211' => 'din', 'Duzib133G1256' => 'dzi', 'Duzib211G0133' => 'dzi', 'Duzib251G0655' => 'dzi', 'Duzib268G1042' => 'dzi', 'ECA233G3051' => 'eca', 'EL10Ac6g14195' => 'bvu', 'Eucgr.F02850' => 'egr', 'FAN12G0350' => 'fan', 'FAN17G2556' => 'fan', 'FAN19G2032' => 'fan', 'FAN22G0549' => 'fan', 'FAN23G2186' => 'fan', 'FAN23G2595' => 'fan', 'FAN26G1532' => 'fan', 'FAN28G0984' => 'fan', 'FAN28G2761' => 'fan', 'FvH4_1g28730' => 'fve', 'FvH4_4g34080' => 'fve', 'Glyma.02G245500' => 'gma', 'Glyma.05G139900' => 'gma', 'Glyma.08G095200' => 'gma', 'Glyma.14G215700' => 'gma', 'Gohir.A01G150100' => 'ghi', 'Gohir.A04G141800' => 'ghi', 'Gohir.A07G078500' => 'ghi', 'Gohir.D01G143400' => 'ghi', 'Gohir.D04G187100' => 'ghi', 'Gohir.D07G083600' => 'ghi', 'Gorai.001G089200' => 'gra', 'Gorai.002G176900' => 'gra', 'Gorai.012G181300' => 'gra', 'GSVIVG01011708001' => 'vvi', 'GSVIVG01030770001' => 'vvi', 'HanXRQChr09g0258881' => 'han', 'HanXRQChr12g0363531' => 'han', 'HanXRQChr16g0529811' => 'han', 'HanXRQChr17g0566831' => 'han', 'Haze_10943' => 'cav', 'Haze_10944' => 'cav', 'Haze_14256' => 'cav', 'Hma1.2p1_0120F.1_g057100' => 'hma', 'Hma1.2p1_0330F.1_g127380' => 'hma', 'Hma1.2p1_0346F.1_g131550' => 'hma', 'Hma1.2p1_0524F.1_g172390' => 'hma', 'Hma1.2p1_1541F.1_g289690' => 'hma', 'HPP92_000178' => 'vpl', 'HPP92_021860' => 'vpl', 'Hund13110' => 'sun', 'Hund24965' => 'sun', 'Lalb_Chr00c06g0404611' => 'lal', 'Lalb_Chr00c06g0404621' => 'lal', 'Lalb_Chr00c06g0404631' => 'lal', 'Lalb_Chr07g0187721' => 'lal', 'Lalb_Chr10g0104401' => 'lal', 'Lalb_Chr12g0206771' => 'lal', 'Lalb_Chr13g0293721' => 'lal', 'Lj3A867T57' => 'lonja', 'Lj4A264T54' => 'lonja', 'Lj4g0004401' => 'lja', 'Lj6A742T65' => 'lonja', 'LjContig00141g0001694' => 'lja', 'Lsat_1_v5_gn_0_33361' => 'lsa', 'Lsat_1_v5_gn_0_36040' => 'lsa', 'Lsat_1_v5_gn_3_124180' => 'lsa', 'Lsat_1_v5_gn_3_128140' => 'lsa', 'Lsat_1_v5_gn_4_13621' => 'lsa', 'Lsat_1_v5_gn_5_34340' => 'lsa', 'Lsat_1_v5_gn_6_37120' => 'lsa', 'Lsat_1_v5_gn_7_69360' => 'lsa', 'Lsat_1_v5_gn_8_115241' => 'lsa', 'Lsat_1_v5_gn_8_14100' => 'lsa', 'Lsat_1_v5_gn_8_44220' => 'lsa', 'Manes.02G076500' => 'mes', 'Manes.15G131000' => 'mes', 'Manes.17G080400' => 'mes', 'Mapoly0031s0122' => 'mpo', 'MD00G1185200' => 'mdo', 'MD09G1264000' => 'mdo', 'MD13G1022000' => 'mdo', 'MD16G1023000' => 'mdo', 'MELO3C026422.2' => 'cme', 'Migut.E00447' => 'egut', 'Migut.L00397' => 'egut', 'MSTRG.13605' => 'ama', 'MSTRG.2151' => 'ama', 'Nitab4.5_0000135g0070' => 'nta', 'Nitab4.5_0000201g0300' => 'nta', 'Nitab4.5_0003406g0020' => 'nta', 'Nn1g04255' => 'nnu', 'Nn2g13629' => 'nnu', 'Nn2g13630' => 'nnu', 'Nn3g18292' => 'nnu', 'Nn4g24249' => 'nnu', 'Oeu014046.2' => 'oeu', 'Oeu032261.1' => 'oeu', 'Oeu059516.1' => 'oeu', 'Os01g0128400' => 'osa', 'Peaxi162Scf00008g00213' => 'pax', 'Peaxi162Scf00188g00047' => 'pax', 'Peaxi162Scf00305g01116' => 'pax', 'Peaxi162Scf00376g00120' => 'pax', 'Peaxi162Scf00980g00013' => 'pax', 'Peaxi162Scf00980g10015' => 'pax', 'PGR004G1776' => 'pgr', 'PGR042G2918' => 'pgr', 'PGSC0003DMG400015690' => 'stu', 'PGSC0003DMG400015904' => 'stu', 'Phvul.002G183300' => 'pvu', 'Phvul.008G235400' => 'pvu', 'Potri.004G091100' => 'ptr', 'Potri.008G131800' => 'ptr', 'Potri.010G110500' => 'ptr', 'Potri.017G124300' => 'ptr', 'Pp3c11_18730' => 'ppa', 'Pp3c7_7370' => 'ppa', 'Prupe.1G329900' => 'ppe', 'Prupe.3G161600' => 'ppe', 'Psat7g082560' => 'psa', 'Psat7g104280' => 'psa', 'PSO017G3508' => 'pso', 'PSO478G5318' => 'pso', 'QL02p057972' => 'qlo', 'QL03p031232' => 'qlo', 'QL03p033886' => 'qlo', 'QL93p0100_0380' => 'qlo', 'RcHm_v2.0_Chr3g0493091' => 'rch', 'RcHm_v2.0_Chr4g0443601' => 'rch', 'RcHm_v2.0_Chr5g0017851' => 'rch', 'Rhsim03G0110000' => 'rsi', 'Rhsim03G0182700' => 'rsi', 'Rhsim09G0094000' => 'rsi', 'Rhsim10G0176900' => 'rsi', 'Rhsim13G0132300' => 'rsi', 'Sabra04G0061300' => 'sbr', 'Sabra08G0100600' => 'sbr', 'Sabra10G0080800' => 'sbr', 'Sabra17G0102300' => 'sbr', 'Sabra17G0102400' => 'sbr', 'Sabra17G0105000' => 'sbr', 'SalBow2G0126' => 'sbo', 'SalBow2G2060' => 'sbo', 'SalBow8G0986' => 'sbo', 'Sc04g0005310' => 'sci', 'Sed0001736' => 'sed', 'Sed0027263' => 'sed', 'SEGI_03798' => 'sgi', 'SEGI_04813' => 'sgi', 'SEGI_22109' => 'sgi', 'SEGI_33231' => 'sgi', 'SGA_v2.0_scaffold234G43657' => 'sas', 'SGA_v2.0_scaffold50G18475' => 'sas', 'SGA_v2.0_scaffold50G18479' => 'sas', 'SHI04565' => 'shi', 'SHI46665' => 'shi', 'SHI46666' => 'shi', 'Solyc05g026540.3' => 'sly', 'Solyc11g011220.2' => 'sly', 'Sopen05g023000' => 'spe', 'Sopen11g006000' => 'spe', 'Sp1g20630' => 'spa', 'Sp3g30860' => 'spa', 'Sp3g31060' => 'spa', 'Sp5g25950' => 'spa', 'TAR371G0200' => 'tar', 'TAR374G0312' => 'tar', 'TAR622G0558' => 'tar', 'THA.LOC104823001' => 'tha', 'Thecc.01G198700' => 'tca', 'Thecc.02G287300' => 'tca', 'Thecc.04G116400' => 'tca', 'Thhalv10007115m.g' => 'esa', 'Thhalv10018292m.g' => 'esa', 'TPR.G17669' => 'tpr', 'TPR.G38617' => 'tpr', 'TPR.G38658' => 'tpr', 'TPR.G5140' => 'tpr', 'TWI53G0025' => 'twi', 'TWI53G1931' => 'twi', 'TWI74G1681' => 'twi', 'TWI77G0817' => 'twi', 'unitig_52.g17277' => 'ugi', 'unitig_62.g23738' => 'ugi', 'vmacro07690' => 'vma', 'vmacro10661' => 'vma', 'VMungo0251G1445' => 'vmu', 'VMungo0647G0260' => 'vmu', 'Zm00001eb125460' => 'zma', 'Zm00001eb335090' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001630' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001630' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001630' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001630' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '396', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p16860' => 'bna', 'A05p09590' => 'bna', 'A06p16290' => 'bna', 'A06p19100' => 'bna', 'A07p13970' => 'bna', 'A07p37170' => 'bna', 'A07p37180' => 'bna', 'A09p11500' => 'bna', 'A09p41590' => 'bna', 'A09p68750' => 'bna', 'A09p68770' => 'bna', 'Aa31LG4G10220' => 'aar', 'Aa31LG7G7180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.252' => 'aag', 'Actinidia17215' => 'ach', 'Ah.02g127830' => 'amhyb', 'Ah.03g137340' => 'amhyb', 'Ah.12g060110' => 'amhyb', 'AL1G36840' => 'aly', 'AL2G10020' => 'aly', 'AL2G30210' => 'aly', 'AL358U10010' => 'aly', 'AL3G23430' => 'aly', 'AL3G39240' => 'aly', 'AL4G24460' => 'aly', 'AL4G36320' => 'aly', 'AL4G47590' => 'aly', 'AL5G10600' => 'aly', 'AL5G11480' => 'aly', 'AL5G13120' => 'aly', 'AL6G43120' => 'aly', 'AL8G20500' => 'aly', 'AL8G20510' => 'aly', 'AL8G20590' => 'aly', 'AL92U10020' => 'aly', 'Aqoxy3G00053' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6GC407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJUW9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEI9RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRPJ7L' => 'arhy', 'AT1G23170' => 'ath', 'AT1G70770' => 'ath', 'AT2G18070' => 'ath', 'AT3G11880' => 'ath', 'ATR0030G050' => 'atr', 'ATR0317G119' => 'atr', 'Atru.chr1.1897' => 'acertr', 'Atru.chr11.655' => 'acertr', 'AUR62014193' => 'cqu', 'AUR62039524' => 'cqu', 'BcaB01g02922' => 'bca', 'BcaB02g09367' => 'bca', 'BcaB02g09720' => 'bca', 'BcaB03g14163' => 'bca', 'BcaB03g14164' => 'bca', 'BcaB03g14927' => 'bca', 'BcaB03g14928' => 'bca', 'BcaB03g15557' => 'bca', 'BcaB03g16639' => 'bca', 'BcaB04g18189' => 'bca', 'BcaB04g18797' => 'bca', 'BcaB05g22201' => 'bca', 'BcaB05g23581' => 'bca', 'BcaB05g23680' => 'bca', 'BcaB05g23776' => 'bca', 'BcaB05g24611' => 'bca', 'BcaB06g26241' => 'bca', 'BcaB07g31320' => 'bca', 'BcaB07g31711' => 'bca', 'BcaB07g32184' => 'bca', 'BcaB07g32186' => 'bca', 'BcaC01g02598' => 'bca', 'BcaC01g04297' => 'bca', 'BcaC02g11735' => 'bca', 'BcaC03g15232' => 'bca', 'BcaC04g20348' => 'bca', 'BcaC04g22129' => 'bca', 'BcaC04g22952' => 'bca', 'BcaC05g26112' => 'bca', 'BcaC05g26224' => 'bca', 'BcaC07g39024' => 'bca', 'BcaC07g42244' => 'bca', 'BcaC07g42253' => 'bca', 'BcaC07g42254' => 'bca', 'BcaC07g42361' => 'bca', 'BcaC07g42364' => 'bca', 'BcaC07g42370' => 'bca', 'BcaC07g42388' => 'bca', 'BcaC08g46510' => 'bca', 'BcaC08g46512' => 'bca', 'BcaC08g46656' => 'bca', 'BcaC08g46657' => 'bca', 'BcaC08g46658' => 'bca', 'BolC2t08862H' => 'bol', 'BolC3t16581H' => 'bol', 'BolC3t18555H' => 'bol', 'BolC4t22835H' => 'bol', 'BolC4t25710H' => 'bol', 'BolC5t30788H' => 'bol', 'BolC5t30935H' => 'bol', 'BolC6t39543H' => 'bol', 'BolC6t39545H' => 'bol', 'BolC6t39669H' => 'bol', 'BolC6t39670H' => 'bol', 'BolC6t39671H' => 'bol', 'BolC6t39672H' => 'bol', 'BolC6t39674H' => 'bol', 'BolC8t49634H' => 'bol', 'BolC8t52847H' => 'bol', 'BolC8t52860H' => 'bol', 'BolC9t54243H' => 'bol', 'BolC9t57339H' => 'bol', 'BraA02t06740Z' => 'bra', 'BraA03t10631Z' => 'bra', 'BraA04t16207Z' => 'bra', 'BraA05t19912Z' => 'bra', 'BraA05t21404Z' => 'bra', 'BraA06t24731Z' => 'bra', 'BraA06t24993Z' => 'bra', 'BraA07t29153Z' => 'bra', 'BraA07t30731Z' => 'bra', 'BraA07t31279Z' => 'bra', 'BraA08t33057Z' => 'bra', 'BraA09t36790Z' => 'bra', 'BraA09t39650Z' => 'bra', 'BraA09t42214Z' => 'bra', 'C02p28180' => 'bna', 'C02p29700' => 'bna', 'C04p11860' => 'bna', 'C04p11870' => 'bna', 'C05p20900' => 'bna', 'C05p20910' => 'bna', 'C05p20920' => 'bna', 'C05p22380' => 'bna', 'C06p44840' => 'bna', 'C06p44860' => 'bna', 'C06p46150' => 'bna', 'C06p46200' => 'bna', 'C06p46240' => 'bna', 'C06p46250' => 'bna', 'C06p46270' => 'bna', 'C06p46280' => 'bna', 'C06p46290' => 'bna', 'C08p11190' => 'bna', 'C08p19980' => 'bna', 'C08p52770' => 'bna', 'C08p53320' => 'bna', 'C09p13520' => 'bna', 'C09p44620' => 'bna', 'C09p67410' => 'bna', 'CAN.G1027.1' => 'can', 'CAN.G222.9' => 'can', 'CANSAT01G0343' => 'cansat', 'CANSAT01G1495' => 'cansat', 'CARHR023630' => 'chi', 'CARHR030430' => 'chi', 'CARHR064030' => 'chi', 'CARHR108790' => 'chi', 'CARHR108800' => 'chi', 'CARHR111720' => 'chi', 'CARHR128760' => 'chi', 'CARHR133670' => 'chi', 'CARHR133680' => 'chi', 'CARHR184760' => 'chi', 'CARHR234650' => 'chi', 'CARHR237900' => 'chi', 'CARHR237910' => 'chi', 'CARHR254720' => 'chi', 'CARHR289260' => 'chi', 'Carub.0001s2274' => 'cru', 'Carub.0002s1751' => 'cru', 'Carub.0004s1079' => 'cru', 'Carub.0004s1259' => 'cru', 'Carub.0005s0085' => 'cru', 'Carub.0007s3365' => 'cru', 'Carub.0007s3366' => 'cru', 'Carub.0007s3370' => 'cru', 'Carub.0007s3371' => 'cru', 'Ca_11593_v3' => 'car', 'CBR_g33920' => 'cbr', 'Cc06_g23100' => 'ccan', 'Cc07_g13540' => 'ccan', 'Cc11_g08280' => 'ccan', 'CDE02G0948' => 'cde', 'CDE08G1097' => 'cde', 'Cfa007819' => 'cfa', 'Cfa014978' => 'cfa', 'Ciclev10011364m.g' => 'ccl', 'Ciclev10014686m.g' => 'ccl', 'CiPaw.03G071300' => 'cil', 'CiPaw.04G047100' => 'cil', 'CiPaw.05G193800' => 'cil', 'ClCG07G005980' => 'cla', 'COL.COLO4_09035' => 'col', 'COL.COLO4_11968' => 'col', 'COL.COLO4_13102' => 'col', 'Cpa.g.sc1084.3' => 'cpa', 'Cpa.g.sc116.51' => 'cpa', 'CsaV3_5G014690' => 'csa', 'CSS0014868' => 'camsi', 'DCAR_007312' => 'dca', 'DCAR_030239' => 'dca', 'Dinv14577' => 'din', 'Dinv18614' => 'din', 'Dinv19032' => 'din', 'Dinv26230' => 'din', 'Dinv28043' => 'din', 'Dinv28211' => 'din', 'Duzib133G1256' => 'dzi', 'Duzib211G0133' => 'dzi', 'Duzib251G0655' => 'dzi', 'Duzib268G1042' => 'dzi', 'ECA233G3051' => 'eca', 'EL10Ac6g14195' => 'bvu', 'Eucgr.F02850' => 'egr', 'FAN12G0350' => 'fan', 'FAN17G2556' => 'fan', 'FAN19G2032' => 'fan', 'FAN22G0549' => 'fan', 'FAN23G2186' => 'fan', 'FAN23G2595' => 'fan', 'FAN26G1532' => 'fan', 'FAN28G0984' => 'fan', 'FAN28G2761' => 'fan', 'FvH4_1g28730' => 'fve', 'FvH4_4g34080' => 'fve', 'Glyma.02G245500' => 'gma', 'Glyma.05G139900' => 'gma', 'Glyma.08G095200' => 'gma', 'Glyma.14G215700' => 'gma', 'Gohir.A01G150100' => 'ghi', 'Gohir.A04G141800' => 'ghi', 'Gohir.A07G078500' => 'ghi', 'Gohir.D01G143400' => 'ghi', 'Gohir.D04G187100' => 'ghi', 'Gohir.D07G083600' => 'ghi', 'Gorai.001G089200' => 'gra', 'Gorai.002G176900' => 'gra', 'Gorai.012G181300' => 'gra', 'GSVIVG01011708001' => 'vvi', 'GSVIVG01030770001' => 'vvi', 'HanXRQChr09g0258881' => 'han', 'HanXRQChr12g0363531' => 'han', 'HanXRQChr16g0529811' => 'han', 'HanXRQChr17g0566831' => 'han', 'Haze_10943' => 'cav', 'Haze_10944' => 'cav', 'Haze_14256' => 'cav', 'Hma1.2p1_0120F.1_g057100' => 'hma', 'Hma1.2p1_0330F.1_g127380' => 'hma', 'Hma1.2p1_0346F.1_g131550' => 'hma', 'Hma1.2p1_0524F.1_g172390' => 'hma', 'Hma1.2p1_1541F.1_g289690' => 'hma', 'HPP92_000178' => 'vpl', 'HPP92_021860' => 'vpl', 'Hund13110' => 'sun', 'Hund24965' => 'sun', 'Lalb_Chr00c06g0404611' => 'lal', 'Lalb_Chr00c06g0404621' => 'lal', 'Lalb_Chr00c06g0404631' => 'lal', 'Lalb_Chr07g0187721' => 'lal', 'Lalb_Chr10g0104401' => 'lal', 'Lalb_Chr12g0206771' => 'lal', 'Lalb_Chr13g0293721' => 'lal', 'Lj3A867T57' => 'lonja', 'Lj4A264T54' => 'lonja', 'Lj4g0004401' => 'lja', 'Lj6A742T65' => 'lonja', 'LjContig00141g0001694' => 'lja', 'Lsat_1_v5_gn_0_33361' => 'lsa', 'Lsat_1_v5_gn_0_36040' => 'lsa', 'Lsat_1_v5_gn_3_124180' => 'lsa', 'Lsat_1_v5_gn_3_128140' => 'lsa', 'Lsat_1_v5_gn_4_13621' => 'lsa', 'Lsat_1_v5_gn_5_34340' => 'lsa', 'Lsat_1_v5_gn_6_37120' => 'lsa', 'Lsat_1_v5_gn_7_69360' => 'lsa', 'Lsat_1_v5_gn_8_115241' => 'lsa', 'Lsat_1_v5_gn_8_14100' => 'lsa', 'Lsat_1_v5_gn_8_44220' => 'lsa', 'Manes.02G076500' => 'mes', 'Manes.15G131000' => 'mes', 'Manes.17G080400' => 'mes', 'Mapoly0031s0122' => 'mpo', 'MD00G1185200' => 'mdo', 'MD09G1264000' => 'mdo', 'MD13G1022000' => 'mdo', 'MD16G1023000' => 'mdo', 'MELO3C026422.2' => 'cme', 'Migut.E00447' => 'egut', 'Migut.L00397' => 'egut', 'MSTRG.13605' => 'ama', 'MSTRG.2151' => 'ama', 'Nitab4.5_0000135g0070' => 'nta', 'Nitab4.5_0000201g0300' => 'nta', 'Nitab4.5_0003406g0020' => 'nta', 'Nn1g04255' => 'nnu', 'Nn2g13629' => 'nnu', 'Nn2g13630' => 'nnu', 'Nn3g18292' => 'nnu', 'Nn4g24249' => 'nnu', 'Oeu014046.2' => 'oeu', 'Oeu032261.1' => 'oeu', 'Oeu059516.1' => 'oeu', 'Os01g0128400' => 'osa', 'Peaxi162Scf00008g00213' => 'pax', 'Peaxi162Scf00188g00047' => 'pax', 'Peaxi162Scf00305g01116' => 'pax', 'Peaxi162Scf00376g00120' => 'pax', 'Peaxi162Scf00980g00013' => 'pax', 'Peaxi162Scf00980g10015' => 'pax', 'PGR004G1776' => 'pgr', 'PGR042G2918' => 'pgr', 'PGSC0003DMG400015690' => 'stu', 'PGSC0003DMG400015904' => 'stu', 'Phvul.002G183300' => 'pvu', 'Phvul.008G235400' => 'pvu', 'Potri.004G091100' => 'ptr', 'Potri.008G131800' => 'ptr', 'Potri.010G110500' => 'ptr', 'Potri.017G124300' => 'ptr', 'Pp3c11_18730' => 'ppa', 'Pp3c7_7370' => 'ppa', 'Prupe.1G329900' => 'ppe', 'Prupe.3G161600' => 'ppe', 'Psat7g082560' => 'psa', 'Psat7g104280' => 'psa', 'PSO017G3508' => 'pso', 'PSO478G5318' => 'pso', 'QL02p057972' => 'qlo', 'QL03p031232' => 'qlo', 'QL03p033886' => 'qlo', 'QL93p0100_0380' => 'qlo', 'RcHm_v2.0_Chr3g0493091' => 'rch', 'RcHm_v2.0_Chr4g0443601' => 'rch', 'RcHm_v2.0_Chr5g0017851' => 'rch', 'Rhsim03G0110000' => 'rsi', 'Rhsim03G0182700' => 'rsi', 'Rhsim09G0094000' => 'rsi', 'Rhsim10G0176900' => 'rsi', 'Rhsim13G0132300' => 'rsi', 'Sabra04G0061300' => 'sbr', 'Sabra08G0100600' => 'sbr', 'Sabra10G0080800' => 'sbr', 'Sabra17G0102300' => 'sbr', 'Sabra17G0102400' => 'sbr', 'Sabra17G0105000' => 'sbr', 'SalBow2G0126' => 'sbo', 'SalBow2G2060' => 'sbo', 'SalBow8G0986' => 'sbo', 'Sc04g0005310' => 'sci', 'Sed0001736' => 'sed', 'Sed0027263' => 'sed', 'SEGI_03798' => 'sgi', 'SEGI_04813' => 'sgi', 'SEGI_22109' => 'sgi', 'SEGI_33231' => 'sgi', 'SGA_v2.0_scaffold234G43657' => 'sas', 'SGA_v2.0_scaffold50G18475' => 'sas', 'SGA_v2.0_scaffold50G18479' => 'sas', 'SHI04565' => 'shi', 'SHI46665' => 'shi', 'SHI46666' => 'shi', 'Solyc05g026540.3' => 'sly', 'Solyc11g011220.2' => 'sly', 'Sopen05g023000' => 'spe', 'Sopen11g006000' => 'spe', 'Sp1g20630' => 'spa', 'Sp3g30860' => 'spa', 'Sp3g31060' => 'spa', 'Sp5g25950' => 'spa', 'TAR371G0200' => 'tar', 'TAR374G0312' => 'tar', 'TAR622G0558' => 'tar', 'THA.LOC104823001' => 'tha', 'Thecc.01G198700' => 'tca', 'Thecc.02G287300' => 'tca', 'Thecc.04G116400' => 'tca', 'Thhalv10007115m.g' => 'esa', 'Thhalv10018292m.g' => 'esa', 'TPR.G17669' => 'tpr', 'TPR.G38617' => 'tpr', 'TPR.G38658' => 'tpr', 'TPR.G5140' => 'tpr', 'TWI53G0025' => 'twi', 'TWI53G1931' => 'twi', 'TWI74G1681' => 'twi', 'TWI77G0817' => 'twi', 'unitig_52.g17277' => 'ugi', 'unitig_62.g23738' => 'ugi', 'vmacro07690' => 'vma', 'vmacro10661' => 'vma', 'VMungo0251G1445' => 'vmu', 'VMungo0647G0260' => 'vmu', 'Zm00001eb125460' => 'zma', 'Zm00001eb335090' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001630', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001630' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '396', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001630' ) ), 'genes' => array( 'A02p16860' => 'bna', 'A05p09590' => 'bna', 'A06p16290' => 'bna', 'A06p19100' => 'bna', 'A07p13970' => 'bna', 'A07p37170' => 'bna', 'A07p37180' => 'bna', 'A09p11500' => 'bna', 'A09p41590' => 'bna', 'A09p68750' => 'bna', 'A09p68770' => 'bna', 'Aa31LG4G10220' => 'aar', 'Aa31LG7G7180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.252' => 'aag', 'Actinidia17215' => 'ach', 'Ah.02g127830' => 'amhyb', 'Ah.03g137340' => 'amhyb', 'Ah.12g060110' => 'amhyb', 'AL1G36840' => 'aly', 'AL2G10020' => 'aly', 'AL2G30210' => 'aly', 'AL358U10010' => 'aly', 'AL3G23430' => 'aly', 'AL3G39240' => 'aly', 'AL4G24460' => 'aly', 'AL4G36320' => 'aly', 'AL4G47590' => 'aly', 'AL5G10600' => 'aly', 'AL5G11480' => 'aly', 'AL5G13120' => 'aly', 'AL6G43120' => 'aly', 'AL8G20500' => 'aly', 'AL8G20510' => 'aly', 'AL8G20590' => 'aly', 'AL92U10020' => 'aly', 'Aqoxy3G00053' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6GC407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJUW9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEI9RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRPJ7L' => 'arhy', 'AT1G23170' => 'ath', 'AT1G70770' => 'ath', 'AT2G18070' => 'ath', 'AT3G11880' => 'ath', 'ATR0030G050' => 'atr', 'ATR0317G119' => 'atr', 'Atru.chr1.1897' => 'acertr', 'Atru.chr11.655' => 'acertr', 'AUR62014193' => 'cqu', 'AUR62039524' => 'cqu', 'BcaB01g02922' => 'bca', 'BcaB02g09367' => 'bca', 'BcaB02g09720' => 'bca', 'BcaB03g14163' => 'bca', 'BcaB03g14164' => 'bca', 'BcaB03g14927' => 'bca', 'BcaB03g14928' => 'bca', 'BcaB03g15557' => 'bca', 'BcaB03g16639' => 'bca', 'BcaB04g18189' => 'bca', 'BcaB04g18797' => 'bca', 'BcaB05g22201' => 'bca', 'BcaB05g23581' => 'bca', 'BcaB05g23680' => 'bca', 'BcaB05g23776' => 'bca', 'BcaB05g24611' => 'bca', 'BcaB06g26241' => 'bca', 'BcaB07g31320' => 'bca', 'BcaB07g31711' => 'bca', 'BcaB07g32184' => 'bca', 'BcaB07g32186' => 'bca', 'BcaC01g02598' => 'bca', 'BcaC01g04297' => 'bca', 'BcaC02g11735' => 'bca', 'BcaC03g15232' => 'bca', 'BcaC04g20348' => 'bca', 'BcaC04g22129' => 'bca', 'BcaC04g22952' => 'bca', 'BcaC05g26112' => 'bca', 'BcaC05g26224' => 'bca', 'BcaC07g39024' => 'bca', 'BcaC07g42244' => 'bca', 'BcaC07g42253' => 'bca', 'BcaC07g42254' => 'bca', 'BcaC07g42361' => 'bca', 'BcaC07g42364' => 'bca', 'BcaC07g42370' => 'bca', 'BcaC07g42388' => 'bca', 'BcaC08g46510' => 'bca', 'BcaC08g46512' => 'bca', 'BcaC08g46656' => 'bca', 'BcaC08g46657' => 'bca', 'BcaC08g46658' => 'bca', 'BolC2t08862H' => 'bol', 'BolC3t16581H' => 'bol', 'BolC3t18555H' => 'bol', 'BolC4t22835H' => 'bol', 'BolC4t25710H' => 'bol', 'BolC5t30788H' => 'bol', 'BolC5t30935H' => 'bol', 'BolC6t39543H' => 'bol', 'BolC6t39545H' => 'bol', 'BolC6t39669H' => 'bol', 'BolC6t39670H' => 'bol', 'BolC6t39671H' => 'bol', 'BolC6t39672H' => 'bol', 'BolC6t39674H' => 'bol', 'BolC8t49634H' => 'bol', 'BolC8t52847H' => 'bol', 'BolC8t52860H' => 'bol', 'BolC9t54243H' => 'bol', 'BolC9t57339H' => 'bol', 'BraA02t06740Z' => 'bra', 'BraA03t10631Z' => 'bra', 'BraA04t16207Z' => 'bra', 'BraA05t19912Z' => 'bra', 'BraA05t21404Z' => 'bra', 'BraA06t24731Z' => 'bra', 'BraA06t24993Z' => 'bra', 'BraA07t29153Z' => 'bra', 'BraA07t30731Z' => 'bra', 'BraA07t31279Z' => 'bra', 'BraA08t33057Z' => 'bra', 'BraA09t36790Z' => 'bra', 'BraA09t39650Z' => 'bra', 'BraA09t42214Z' => 'bra', 'C02p28180' => 'bna', 'C02p29700' => 'bna', 'C04p11860' => 'bna', 'C04p11870' => 'bna', 'C05p20900' => 'bna', 'C05p20910' => 'bna', 'C05p20920' => 'bna', 'C05p22380' => 'bna', 'C06p44840' => 'bna', 'C06p44860' => 'bna', 'C06p46150' => 'bna', 'C06p46200' => 'bna', 'C06p46240' => 'bna', 'C06p46250' => 'bna', 'C06p46270' => 'bna', 'C06p46280' => 'bna', 'C06p46290' => 'bna', 'C08p11190' => 'bna', 'C08p19980' => 'bna', 'C08p52770' => 'bna', 'C08p53320' => 'bna', 'C09p13520' => 'bna', 'C09p44620' => 'bna', 'C09p67410' => 'bna', 'CAN.G1027.1' => 'can', 'CAN.G222.9' => 'can', 'CANSAT01G0343' => 'cansat', 'CANSAT01G1495' => 'cansat', 'CARHR023630' => 'chi', 'CARHR030430' => 'chi', 'CARHR064030' => 'chi', 'CARHR108790' => 'chi', 'CARHR108800' => 'chi', 'CARHR111720' => 'chi', 'CARHR128760' => 'chi', 'CARHR133670' => 'chi', 'CARHR133680' => 'chi', 'CARHR184760' => 'chi', 'CARHR234650' => 'chi', 'CARHR237900' => 'chi', 'CARHR237910' => 'chi', 'CARHR254720' => 'chi', 'CARHR289260' => 'chi', 'Carub.0001s2274' => 'cru', 'Carub.0002s1751' => 'cru', 'Carub.0004s1079' => 'cru', 'Carub.0004s1259' => 'cru', 'Carub.0005s0085' => 'cru', 'Carub.0007s3365' => 'cru', 'Carub.0007s3366' => 'cru', 'Carub.0007s3370' => 'cru', 'Carub.0007s3371' => 'cru', 'Ca_11593_v3' => 'car', 'CBR_g33920' => 'cbr', 'Cc06_g23100' => 'ccan', 'Cc07_g13540' => 'ccan', 'Cc11_g08280' => 'ccan', 'CDE02G0948' => 'cde', 'CDE08G1097' => 'cde', 'Cfa007819' => 'cfa', 'Cfa014978' => 'cfa', 'Ciclev10011364m.g' => 'ccl', 'Ciclev10014686m.g' => 'ccl', 'CiPaw.03G071300' => 'cil', 'CiPaw.04G047100' => 'cil', 'CiPaw.05G193800' => 'cil', 'ClCG07G005980' => 'cla', 'COL.COLO4_09035' => 'col', 'COL.COLO4_11968' => 'col', 'COL.COLO4_13102' => 'col', 'Cpa.g.sc1084.3' => 'cpa', 'Cpa.g.sc116.51' => 'cpa', 'CsaV3_5G014690' => 'csa', 'CSS0014868' => 'camsi', 'DCAR_007312' => 'dca', 'DCAR_030239' => 'dca', 'Dinv14577' => 'din', 'Dinv18614' => 'din', 'Dinv19032' => 'din', 'Dinv26230' => 'din', 'Dinv28043' => 'din', 'Dinv28211' => 'din', 'Duzib133G1256' => 'dzi', 'Duzib211G0133' => 'dzi', 'Duzib251G0655' => 'dzi', 'Duzib268G1042' => 'dzi', 'ECA233G3051' => 'eca', 'EL10Ac6g14195' => 'bvu', 'Eucgr.F02850' => 'egr', 'FAN12G0350' => 'fan', 'FAN17G2556' => 'fan', 'FAN19G2032' => 'fan', 'FAN22G0549' => 'fan', 'FAN23G2186' => 'fan', 'FAN23G2595' => 'fan', 'FAN26G1532' => 'fan', 'FAN28G0984' => 'fan', 'FAN28G2761' => 'fan', 'FvH4_1g28730' => 'fve', 'FvH4_4g34080' => 'fve', 'Glyma.02G245500' => 'gma', 'Glyma.05G139900' => 'gma', 'Glyma.08G095200' => 'gma', 'Glyma.14G215700' => 'gma', 'Gohir.A01G150100' => 'ghi', 'Gohir.A04G141800' => 'ghi', 'Gohir.A07G078500' => 'ghi', 'Gohir.D01G143400' => 'ghi', 'Gohir.D04G187100' => 'ghi', 'Gohir.D07G083600' => 'ghi', 'Gorai.001G089200' => 'gra', 'Gorai.002G176900' => 'gra', 'Gorai.012G181300' => 'gra', 'GSVIVG01011708001' => 'vvi', 'GSVIVG01030770001' => 'vvi', 'HanXRQChr09g0258881' => 'han', 'HanXRQChr12g0363531' => 'han', 'HanXRQChr16g0529811' => 'han', 'HanXRQChr17g0566831' => 'han', 'Haze_10943' => 'cav', 'Haze_10944' => 'cav', 'Haze_14256' => 'cav', 'Hma1.2p1_0120F.1_g057100' => 'hma', 'Hma1.2p1_0330F.1_g127380' => 'hma', 'Hma1.2p1_0346F.1_g131550' => 'hma', 'Hma1.2p1_0524F.1_g172390' => 'hma', 'Hma1.2p1_1541F.1_g289690' => 'hma', 'HPP92_000178' => 'vpl', 'HPP92_021860' => 'vpl', 'Hund13110' => 'sun', 'Hund24965' => 'sun', 'Lalb_Chr00c06g0404611' => 'lal', 'Lalb_Chr00c06g0404621' => 'lal', 'Lalb_Chr00c06g0404631' => 'lal', 'Lalb_Chr07g0187721' => 'lal', 'Lalb_Chr10g0104401' => 'lal', 'Lalb_Chr12g0206771' => 'lal', 'Lalb_Chr13g0293721' => 'lal', 'Lj3A867T57' => 'lonja', 'Lj4A264T54' => 'lonja', 'Lj4g0004401' => 'lja', 'Lj6A742T65' => 'lonja', 'LjContig00141g0001694' => 'lja', 'Lsat_1_v5_gn_0_33361' => 'lsa', 'Lsat_1_v5_gn_0_36040' => 'lsa', 'Lsat_1_v5_gn_3_124180' => 'lsa', 'Lsat_1_v5_gn_3_128140' => 'lsa', 'Lsat_1_v5_gn_4_13621' => 'lsa', 'Lsat_1_v5_gn_5_34340' => 'lsa', 'Lsat_1_v5_gn_6_37120' => 'lsa', 'Lsat_1_v5_gn_7_69360' => 'lsa', 'Lsat_1_v5_gn_8_115241' => 'lsa', 'Lsat_1_v5_gn_8_14100' => 'lsa', 'Lsat_1_v5_gn_8_44220' => 'lsa', 'Manes.02G076500' => 'mes', 'Manes.15G131000' => 'mes', 'Manes.17G080400' => 'mes', 'Mapoly0031s0122' => 'mpo', 'MD00G1185200' => 'mdo', 'MD09G1264000' => 'mdo', 'MD13G1022000' => 'mdo', 'MD16G1023000' => 'mdo', 'MELO3C026422.2' => 'cme', 'Migut.E00447' => 'egut', 'Migut.L00397' => 'egut', 'MSTRG.13605' => 'ama', 'MSTRG.2151' => 'ama', 'Nitab4.5_0000135g0070' => 'nta', 'Nitab4.5_0000201g0300' => 'nta', 'Nitab4.5_0003406g0020' => 'nta', 'Nn1g04255' => 'nnu', 'Nn2g13629' => 'nnu', 'Nn2g13630' => 'nnu', 'Nn3g18292' => 'nnu', 'Nn4g24249' => 'nnu', 'Oeu014046.2' => 'oeu', 'Oeu032261.1' => 'oeu', 'Oeu059516.1' => 'oeu', 'Os01g0128400' => 'osa', 'Peaxi162Scf00008g00213' => 'pax', 'Peaxi162Scf00188g00047' => 'pax', 'Peaxi162Scf00305g01116' => 'pax', 'Peaxi162Scf00376g00120' => 'pax', 'Peaxi162Scf00980g00013' => 'pax', 'Peaxi162Scf00980g10015' => 'pax', 'PGR004G1776' => 'pgr', 'PGR042G2918' => 'pgr', 'PGSC0003DMG400015690' => 'stu', 'PGSC0003DMG400015904' => 'stu', 'Phvul.002G183300' => 'pvu', 'Phvul.008G235400' => 'pvu', 'Potri.004G091100' => 'ptr', 'Potri.008G131800' => 'ptr', 'Potri.010G110500' => 'ptr', 'Potri.017G124300' => 'ptr', 'Pp3c11_18730' => 'ppa', 'Pp3c7_7370' => 'ppa', 'Prupe.1G329900' => 'ppe', 'Prupe.3G161600' => 'ppe', 'Psat7g082560' => 'psa', 'Psat7g104280' => 'psa', 'PSO017G3508' => 'pso', 'PSO478G5318' => 'pso', 'QL02p057972' => 'qlo', 'QL03p031232' => 'qlo', 'QL03p033886' => 'qlo', 'QL93p0100_0380' => 'qlo', 'RcHm_v2.0_Chr3g0493091' => 'rch', 'RcHm_v2.0_Chr4g0443601' => 'rch', 'RcHm_v2.0_Chr5g0017851' => 'rch', 'Rhsim03G0110000' => 'rsi', 'Rhsim03G0182700' => 'rsi', 'Rhsim09G0094000' => 'rsi', 'Rhsim10G0176900' => 'rsi', 'Rhsim13G0132300' => 'rsi', 'Sabra04G0061300' => 'sbr', 'Sabra08G0100600' => 'sbr', 'Sabra10G0080800' => 'sbr', 'Sabra17G0102300' => 'sbr', 'Sabra17G0102400' => 'sbr', 'Sabra17G0105000' => 'sbr', 'SalBow2G0126' => 'sbo', 'SalBow2G2060' => 'sbo', 'SalBow8G0986' => 'sbo', 'Sc04g0005310' => 'sci', 'Sed0001736' => 'sed', 'Sed0027263' => 'sed', 'SEGI_03798' => 'sgi', 'SEGI_04813' => 'sgi', 'SEGI_22109' => 'sgi', 'SEGI_33231' => 'sgi', 'SGA_v2.0_scaffold234G43657' => 'sas', 'SGA_v2.0_scaffold50G18475' => 'sas', 'SGA_v2.0_scaffold50G18479' => 'sas', 'SHI04565' => 'shi', 'SHI46665' => 'shi', 'SHI46666' => 'shi', 'Solyc05g026540.3' => 'sly', 'Solyc11g011220.2' => 'sly', 'Sopen05g023000' => 'spe', 'Sopen11g006000' => 'spe', 'Sp1g20630' => 'spa', 'Sp3g30860' => 'spa', 'Sp3g31060' => 'spa', 'Sp5g25950' => 'spa', 'TAR371G0200' => 'tar', 'TAR374G0312' => 'tar', 'TAR622G0558' => 'tar', 'THA.LOC104823001' => 'tha', 'Thecc.01G198700' => 'tca', 'Thecc.02G287300' => 'tca', 'Thecc.04G116400' => 'tca', 'Thhalv10007115m.g' => 'esa', 'Thhalv10018292m.g' => 'esa', 'TPR.G17669' => 'tpr', 'TPR.G38617' => 'tpr', 'TPR.G38658' => 'tpr', 'TPR.G5140' => 'tpr', 'TWI53G0025' => 'twi', 'TWI53G1931' => 'twi', 'TWI74G1681' => 'twi', 'TWI77G0817' => 'twi', 'unitig_52.g17277' => 'ugi', 'unitig_62.g23738' => 'ugi', 'vmacro07690' => 'vma', 'vmacro10661' => 'vma', 'VMungo0251G1445' => 'vmu', 'VMungo0647G0260' => 'vmu', 'Zm00001eb125460' => 'zma', 'Zm00001eb335090' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001630' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001630' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001630' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001630' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151