Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '400', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p25880' => 'bna', 'A03p68260' => 'bna', 'A08p32850' => 'bna', 'A09p15880' => 'bna', 'Aa31LG1G2240' => 'aar', 'Aa31LG2G390' => 'aar', 'Aa31LG3G6400' => 'aar', 'Aa31LG9G10390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3371' => 'aag', 'Actinidia02077' => 'ach', 'Actinidia05249' => 'ach', 'Actinidia12690' => 'ach', 'Actinidia14474' => 'ach', 'Actinidia17251' => 'ach', 'Ah.02g116170' => 'amhyb', 'Ah.04g152060' => 'amhyb', 'AL1G23720' => 'aly', 'AL2G12850' => 'aly', 'AL3G23860' => 'aly', 'AL6G46930' => 'aly', 'Aqoxy1G00301' => 'aox', 'Aqoxy2G00113' => 'aox', 'Aqoxy7G00625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WSK7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UK8SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK4DPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8Y1RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP6HK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8KRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGG9GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTM09G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YA13V2' => 'arhy', 'AT1G12340' => 'ath', 'AT1G12390' => 'ath', 'AT3G12180' => 'ath', 'AT4G12090' => 'ath', 'ATR0605G019' => 'atr', 'ATR0810G201' => 'atr', 'Atru.chr1.944' => 'acertr', 'Atru.chr5.312' => 'acertr', 'Atru.chr9.1456' => 'acertr', 'AUR62017376' => 'cqu', 'AUR62024372' => 'cqu', 'AUR62025967' => 'cqu', 'BcaB03g13190' => 'bca', 'BcaB05g23766' => 'bca', 'BcaB07g31367' => 'bca', 'BcaB07g31813' => 'bca', 'BcaB08g34279' => 'bca', 'BcaC03g16310' => 'bca', 'BcaC04g22456' => 'bca', 'BcaC05g29274' => 'bca', 'BcaC06g31916' => 'bca', 'BcaC07g41703' => 'bca', 'BolC1t05257H' => 'bol', 'BolC2t10139H' => 'bol', 'BolC5t29823H' => 'bol', 'BolC5t34224H' => 'bol', 'BolC8t49169H' => 'bol', 'BolC9t54818H' => 'bol', 'BraA01t02642Z' => 'bra', 'BraA02t07577Z' => 'bra', 'BraA05t22510Z' => 'bra', 'BraA08t35207Z' => 'bra', 'BraA09t37223Z' => 'bra', 'BraA09t41735Z' => 'bra', 'C02p41220' => 'bna', 'C08p15410' => 'bna', 'C09p19110' => 'bna', 'CAN.G1394.36' => 'can', 'CAN.G360.14' => 'can', 'CAN.G388.11' => 'can', 'CAN.G415.4' => 'can', 'CAN.G62.59' => 'can', 'CANSAT56G0461' => 'cansat', 'CANSAT80G2271' => 'cansat', 'CANSAT80G2415' => 'cansat', 'CARHR012680' => 'chi', 'CARHR048870' => 'chi', 'CARHR086760' => 'chi', 'CARHR254130' => 'chi', 'Carub.0001s1204' => 'cru', 'Carub.0002s0212' => 'cru', 'Carub.0003s1155' => 'cru', 'Carub.0006s3121' => 'cru', 'CBR_g18650' => 'cbr', 'Cc00_g05050' => 'ccan', 'Cc00_g22700' => 'ccan', 'Cc00_g30310' => 'ccan', 'Cc02_g36670' => 'ccan', 'Cc08_g13380' => 'ccan', 'CDE04G2774' => 'cde', 'CDE12G0013' => 'cde', 'Cfa012028' => 'cfa', 'Ciclev10006138m.g' => 'ccl', 'Ciclev10022158m.g' => 'ccl', 'Ciclev10022790m.g' => 'ccl', 'CiPaw.01G261700' => 'cil', 'CiPaw.02G167500' => 'cil', 'CiPaw.10G029400' => 'cil', 'CiPaw.11G146400' => 'cil', 'CiPaw.12G103700' => 'cil', 'ClCG00G001000' => 'cla', 'ClCG00G004810' => 'cla', 'ClCG01G003550' => 'cla', 'ClCG04G000520' => 'cla', 'ClCG10G003230' => 'cla', 'COL.COLO4_28735' => 'col', 'Cpa.g.sc29.77' => 'cpa', 'Cpa.g.sc85.119' => 'cpa', 'Cre01.g036550' => 'cre', 'CsaV3_3G003260' => 'csa', 'CsaV3_4G031560' => 'csa', 'CsaV3_5G003670' => 'csa', 'CSS0000566' => 'camsi', 'CSS0009605' => 'camsi', 'CSS0034022' => 'camsi', 'CSS0037389' => 'camsi', 'CSS0049455' => 'camsi', 'DCAR_000862' => 'dca', 'Dinv18103' => 'din', 'Dinv24112' => 'din', 'Dinv32380' => 'din', 'Dinv37753' => 'din', 'Dinv39068' => 'din', 'Dinv43713' => 'din', 'Duzib068G0089' => 'dzi', 'Duzib084G1257' => 'dzi', 'Duzib093G2166' => 'dzi', 'Duzib133G0532' => 'dzi', 'Duzib138G1678' => 'dzi', 'Duzib205G0876' => 'dzi', 'ECA236G0731' => 'eca', 'ECA247G3905' => 'eca', 'EL10Ac3g06982' => 'bvu', 'EL10Ac5g12634' => 'bvu', 'Eucgr.A02414' => 'egr', 'Eucgr.D01977' => 'egr', 'Eucgr.D02451' => 'egr', 'Eucgr.E00481' => 'egr', 'FAN01G0871' => 'fan', 'FAN02G0701' => 'fan', 'FAN03G0983' => 'fan', 'FAN04G1796' => 'fan', 'FAN05G2730' => 'fan', 'FAN06G0869' => 'fan', 'FAN06G4857' => 'fan', 'FAN08G1546' => 'fan', 'FAN09G3015' => 'fan', 'FAN10G0480' => 'fan', 'FAN10G2374' => 'fan', 'FAN14G0736' => 'fan', 'FAN18G4230' => 'fan', 'FvH4_5g00840' => 'fve', 'FvH4_6g22920' => 'fve', 'FvH4_7g11930' => 'fve', 'Glyma.01G212700' => 'gma', 'Glyma.02G175400' => 'gma', 'Glyma.03G141500' => 'gma', 'Glyma.05G053500' => 'gma', 'Glyma.09G269000' => 'gma', 'Glyma.10G093400' => 'gma', 'Glyma.11G029100' => 'gma', 'Glyma.17G136000' => 'gma', 'Glyma.18G220800' => 'gma', 'Glyma.19G144000' => 'gma', 'Gohir.A03G011500' => 'ghi', 'Gohir.A08G134400' => 'ghi', 'Gohir.A08G174500' => 'ghi', 'Gohir.A09G125200' => 'ghi', 'Gohir.A09G194700' => 'ghi', 'Gohir.A12G221800' => 'ghi', 'Gohir.D03G158400' => 'ghi', 'Gohir.D08G155350' => 'ghi', 'Gohir.D08G193200' => 'ghi', 'Gohir.D09G122200' => 'ghi', 'Gohir.D09G189000' => 'ghi', 'Gohir.D11G085366' => 'ghi', 'Gohir.D12G224300' => 'ghi', 'Gorai.003G167000' => 'gra', 'Gorai.004G161400' => 'gra', 'Gorai.004G203400' => 'gra', 'Gorai.006G140000' => 'gra', 'Gorai.006G211700' => 'gra', 'Gorai.007G091200' => 'gra', 'Gorai.008G240400' => 'gra', 'GSVIVG01019941001' => 'vvi', 'GSVIVG01027615001' => 'vvi', 'GSVIVG01033351001' => 'vvi', 'HanXRQChr02g0046231' => 'han', 'HanXRQChr03g0093881' => 'han', 'HanXRQChr05g0132751' => 'han', 'HanXRQChr05g0132761' => 'han', 'HanXRQChr06g0176351' => 'han', 'HanXRQChr07g0188611' => 'han', 'HanXRQChr10g0291881' => 'han', 'HanXRQChr13g0417341' => 'han', 'HanXRQChr13g0425211' => 'han', 'Haze_16818' => 'cav', 'Haze_19926' => 'cav', 'Hma1.2p1_0367F.1_g137090' => 'hma', 'Hma1.2p1_0856F.1_g229070' => 'hma', 'HPP92_014949' => 'vpl', 'HPP92_014980' => 'vpl', 'HPP92_017823' => 'vpl', 'HPP92_017834' => 'vpl', 'HPP92_027174' => 'vpl', 'Hund11557' => 'sun', 'Hund14663' => 'sun', 'Hund24756' => 'sun', 'Lalb_Chr05g0214651' => 'lal', 'Lalb_Chr05g0225311' => 'lal', 'Lalb_Chr16g0379811' => 'lal', 'Lalb_Chr16g0389581' => 'lal', 'Lalb_Chr25g0287561' => 'lal', 'Lj1g0003796' => 'lja', 'Lj2g0016923' => 'lja', 'Lj4g0006806' => 'lja', 'Lj5g0003236' => 'lja', 'Lj9A570T40' => 'lonja', 'Lju124A33T33' => 'lonja', 'Lsat_1_v5_gn_3_131981' => 'lsa', 'Lsat_1_v5_gn_6_88901' => 'lsa', 'Lsat_1_v5_gn_6_9661' => 'lsa', 'Lsat_1_v5_gn_8_79420' => 'lsa', 'Lsat_1_v5_gn_9_28441' => 'lsa', 'Manes.01G072000' => 'mes', 'Manes.01G265700' => 'mes', 'Manes.02G032648' => 'mes', 'Manes.09G030700' => 'mes', 'Mapoly0124s0019' => 'mpo', 'MBI01_g36429_MAGBIO' => 'mbi', 'MBI04_g14255_MAGBIO' => 'mbi', 'MBI04_g35278_MAGBIO' => 'mbi', 'MCO13G591' => 'mco', 'MD02G1203900' => 'mdo', 'MD04G1077700' => 'mdo', 'MD06G1074200' => 'mdo', 'MD07G1122200' => 'mdo', 'MD12G1063300' => 'mdo', 'MD14G1064100' => 'mdo', 'Medtr0311s0030' => 'mtr', 'Medtr4g102010' => 'mtr', 'Medtr5g011690' => 'mtr', 'Medtr7g074930' => 'mtr', 'Medtr7g092530' => 'mtr', 'MELO3C009082.2' => 'cme', 'MELO3C013992.2' => 'cme', 'Migut.A00843' => 'egut', 'Migut.B01637' => 'egut', 'Migut.E00982' => 'egut', 'Migut.K00062' => 'egut', 'MSTRG.10831' => 'ama', 'MSTRG.12051' => 'ama', 'MSTRG.1932' => 'ama', 'MSTRG.20750' => 'ama', 'MSTRG.25555' => 'ama', 'Nitab4.5_0000016g0010' => 'nta', 'Nitab4.5_0000457g0310' => 'nta', 'Nitab4.5_0000633g0040' => 'nta', 'Nitab4.5_0001265g0020' => 'nta', 'Nitab4.5_0001329g0100' => 'nta', 'Nitab4.5_0001816g0210' => 'nta', 'Nitab4.5_0003912g0040' => 'nta', 'Nitab4.5_0005372g0010' => 'nta', 'Nitab4.5_0007130g0010' => 'nta', 'Nitab4.5_0008022g0040' => 'nta', 'Nn1g01229' => 'nnu', 'Nn2g15496' => 'nnu', 'Nn2g16004' => 'nnu', 'Nn8g40939' => 'nnu', 'Oeu026880.1' => 'oeu', 'Oeu026881.1' => 'oeu', 'Oeu033758.1' => 'oeu', 'Oeu040061.1' => 'oeu', 'Oeu056796.1' => 'oeu', 'Os06g0136500' => 'osa', 'Os12g0506400' => 'osa', 'Peaxi162Scf00051g00212' => 'pax', 'Peaxi162Scf00102g01229' => 'pax', 'Peaxi162Scf00285g00224' => 'pax', 'Peaxi162Scf00959g00317' => 'pax', 'PGR004G1477' => 'pgr', 'PGR031G0493' => 'pgr', 'PGR031G2333' => 'pgr', 'PGSC0003DMG400007015' => 'stu', 'PGSC0003DMG400012484' => 'stu', 'PGSC0003DMG400017581' => 'stu', 'PGSC0003DMG401012773' => 'stu', 'PGSC0003DMG402012773' => 'stu', 'Phvul.001G138400' => 'pvu', 'Phvul.002G151200' => 'pvu', 'Phvul.003G215700' => 'pvu', 'Phvul.007G256900' => 'pvu', 'Phvul.008G076200' => 'pvu', 'Potri.001G116100' => 'ptr', 'Potri.002G148500' => 'ptr', 'Potri.003G116400' => 'ptr', 'Potri.006G057300' => 'ptr', 'Potri.016G051000' => 'ptr', 'Pp3c11_17020' => 'ppa', 'Pp3c7_11500' => 'ppa', 'PRCOL_00001064' => 'pco', 'Prupe.2G146000' => 'ppe', 'Prupe.5G080900' => 'ppe', 'Prupe.7G070300' => 'ppe', 'Psat2g179920' => 'psa', 'Psat3g070360' => 'psa', 'Psat3g115760' => 'psa', 'Psat4g069120' => 'psa', 'Psat6g072480' => 'psa', 'PSO339G2796' => 'pso', 'PSO384G4669' => 'pso', 'PSO478G4034' => 'pso', 'PSO782G2319' => 'pso', 'QL07p022315' => 'qlo', 'QL12p015319' => 'qlo', 'QL93p1910_0004' => 'qlo', 'RcHm_v2.0_Chr1g0350611' => 'rch', 'RcHm_v2.0_Chr1g0366241' => 'rch', 'RcHm_v2.0_Chr1g0366251' => 'rch', 'RcHm_v2.0_Chr3g0480731' => 'rch', 'RcHm_v2.0_Chr3g0490911' => 'rch', 'RcHm_v2.0_Chr3g0490921' => 'rch', 'RcHm_v2.0_Chr3g0492201' => 'rch', 'RcHm_v2.0_Chr3g0492211' => 'rch', 'RcHm_v2.0_Chr7g0201081' => 'rch', 'Rhsim01G0147500' => 'rsi', 'Rhsim04G0099200' => 'rsi', 'Rhsim07G0101000' => 'rsi', 'Sabra01G0089200' => 'sbr', 'Sabra03G0080900' => 'sbr', 'Sabra06G0040400' => 'sbr', 'Sabra16G0054800' => 'sbr', 'SalBow1G6798' => 'sbo', 'SalBow1G7576' => 'sbo', 'Sc01g0009160' => 'sci', 'Sc22g0000530' => 'sci', 'Sc25g0005190' => 'sci', 'Sc25g0005480' => 'sci', 'Sed0000675' => 'sed', 'Sed0007317' => 'sed', 'Sed0012862' => 'sed', 'Sed0026529' => 'sed', 'Sed0026878' => 'sed', 'Sed0027784' => 'sed', 'SEGI_34594' => 'sgi', 'SGA_v2.0_scaffold146G36191' => 'sas', 'SGA_v2.0_scaffold196G40940' => 'sas', 'SGA_v2.0_scaffold273G46447' => 'sas', 'SGA_v2.0_scaffold37G14845' => 'sas', 'SMO115G0342' => 'smo', 'Solyc03g063970.3' => 'sly', 'Solyc05g051030.3' => 'sly', 'Solyc06g060550.3' => 'sly', 'Solyc08g007510.3' => 'sly', 'Sopen01g037110' => 'spe', 'Sopen03g017630' => 'spe', 'Sopen06g020680' => 'spe', 'Sopen08g003470' => 'spe', 'Sp1g10990' => 'spa', 'Sp2g01730' => 'spa', 'Sp3g10420' => 'spa', 'Sp6g05410' => 'spa', 'TAR104G0002' => 'tar', 'TAR369G0875' => 'tar', 'TAR374G0060' => 'tar', 'TAR375G0731' => 'tar', 'TAR633G0901' => 'tar', 'THA.LOC104809920' => 'tha', 'THA.LOC104813950' => 'tha', 'THA.LOC104818359' => 'tha', 'THA.LOC104823560' => 'tha', 'Thecc.01G375900' => 'tca', 'Thecc.03G263000' => 'tca', 'Thecc.05G165500' => 'tca', 'Thhalv10009832m.g' => 'esa', 'Thhalv10021709m.g' => 'esa', 'Thhalv10023753m.g' => 'esa', 'Thhalv10029061m.g' => 'esa', 'TPR.G25629' => 'tpr', 'TPR.G28854' => 'tpr', 'TPR.G37674' => 'tpr', 'TPR.G4708' => 'tpr', 'TPR.G57' => 'tpr', 'TWI59G0626' => 'twi', 'TWI60G0234' => 'twi', 'TWI81G0009' => 'twi', 'unitig_21.g20365' => 'ugi', 'unitig_744.g24440' => 'ugi', 'vmacro09096' => 'vma', 'vmacro14038' => 'vma', 'vmacro21006' => 'vma', 'VMungo0251G1951' => 'vmu', 'VMungo0720G1570' => 'vmu', 'VMungo1215G1929' => 'vmu', 'VMungo1383G1483' => 'vmu', 'VMungo1383G3262' => 'vmu', 'Zm00001eb264160' => 'zma', 'Zm00001eb270040' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001611', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001611' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '400', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001611' ) ), 'genes' => array( 'A02p25880' => 'bna', 'A03p68260' => 'bna', 'A08p32850' => 'bna', 'A09p15880' => 'bna', 'Aa31LG1G2240' => 'aar', 'Aa31LG2G390' => 'aar', 'Aa31LG3G6400' => 'aar', 'Aa31LG9G10390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3371' => 'aag', 'Actinidia02077' => 'ach', 'Actinidia05249' => 'ach', 'Actinidia12690' => 'ach', 'Actinidia14474' => 'ach', 'Actinidia17251' => 'ach', 'Ah.02g116170' => 'amhyb', 'Ah.04g152060' => 'amhyb', 'AL1G23720' => 'aly', 'AL2G12850' => 'aly', 'AL3G23860' => 'aly', 'AL6G46930' => 'aly', 'Aqoxy1G00301' => 'aox', 'Aqoxy2G00113' => 'aox', 'Aqoxy7G00625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WSK7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UK8SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK4DPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8Y1RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP6HK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8KRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGG9GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTM09G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YA13V2' => 'arhy', 'AT1G12340' => 'ath', 'AT1G12390' => 'ath', 'AT3G12180' => 'ath', 'AT4G12090' => 'ath', 'ATR0605G019' => 'atr', 'ATR0810G201' => 'atr', 'Atru.chr1.944' => 'acertr', 'Atru.chr5.312' => 'acertr', 'Atru.chr9.1456' => 'acertr', 'AUR62017376' => 'cqu', 'AUR62024372' => 'cqu', 'AUR62025967' => 'cqu', 'BcaB03g13190' => 'bca', 'BcaB05g23766' => 'bca', 'BcaB07g31367' => 'bca', 'BcaB07g31813' => 'bca', 'BcaB08g34279' => 'bca', 'BcaC03g16310' => 'bca', 'BcaC04g22456' => 'bca', 'BcaC05g29274' => 'bca', 'BcaC06g31916' => 'bca', 'BcaC07g41703' => 'bca', 'BolC1t05257H' => 'bol', 'BolC2t10139H' => 'bol', 'BolC5t29823H' => 'bol', 'BolC5t34224H' => 'bol', 'BolC8t49169H' => 'bol', 'BolC9t54818H' => 'bol', 'BraA01t02642Z' => 'bra', 'BraA02t07577Z' => 'bra', 'BraA05t22510Z' => 'bra', 'BraA08t35207Z' => 'bra', 'BraA09t37223Z' => 'bra', 'BraA09t41735Z' => 'bra', 'C02p41220' => 'bna', 'C08p15410' => 'bna', 'C09p19110' => 'bna', 'CAN.G1394.36' => 'can', 'CAN.G360.14' => 'can', 'CAN.G388.11' => 'can', 'CAN.G415.4' => 'can', 'CAN.G62.59' => 'can', 'CANSAT56G0461' => 'cansat', 'CANSAT80G2271' => 'cansat', 'CANSAT80G2415' => 'cansat', 'CARHR012680' => 'chi', 'CARHR048870' => 'chi', 'CARHR086760' => 'chi', 'CARHR254130' => 'chi', 'Carub.0001s1204' => 'cru', 'Carub.0002s0212' => 'cru', 'Carub.0003s1155' => 'cru', 'Carub.0006s3121' => 'cru', 'CBR_g18650' => 'cbr', 'Cc00_g05050' => 'ccan', 'Cc00_g22700' => 'ccan', 'Cc00_g30310' => 'ccan', 'Cc02_g36670' => 'ccan', 'Cc08_g13380' => 'ccan', 'CDE04G2774' => 'cde', 'CDE12G0013' => 'cde', 'Cfa012028' => 'cfa', 'Ciclev10006138m.g' => 'ccl', 'Ciclev10022158m.g' => 'ccl', 'Ciclev10022790m.g' => 'ccl', 'CiPaw.01G261700' => 'cil', 'CiPaw.02G167500' => 'cil', 'CiPaw.10G029400' => 'cil', 'CiPaw.11G146400' => 'cil', 'CiPaw.12G103700' => 'cil', 'ClCG00G001000' => 'cla', 'ClCG00G004810' => 'cla', 'ClCG01G003550' => 'cla', 'ClCG04G000520' => 'cla', 'ClCG10G003230' => 'cla', 'COL.COLO4_28735' => 'col', 'Cpa.g.sc29.77' => 'cpa', 'Cpa.g.sc85.119' => 'cpa', 'Cre01.g036550' => 'cre', 'CsaV3_3G003260' => 'csa', 'CsaV3_4G031560' => 'csa', 'CsaV3_5G003670' => 'csa', 'CSS0000566' => 'camsi', 'CSS0009605' => 'camsi', 'CSS0034022' => 'camsi', 'CSS0037389' => 'camsi', 'CSS0049455' => 'camsi', 'DCAR_000862' => 'dca', 'Dinv18103' => 'din', 'Dinv24112' => 'din', 'Dinv32380' => 'din', 'Dinv37753' => 'din', 'Dinv39068' => 'din', 'Dinv43713' => 'din', 'Duzib068G0089' => 'dzi', 'Duzib084G1257' => 'dzi', 'Duzib093G2166' => 'dzi', 'Duzib133G0532' => 'dzi', 'Duzib138G1678' => 'dzi', 'Duzib205G0876' => 'dzi', 'ECA236G0731' => 'eca', 'ECA247G3905' => 'eca', 'EL10Ac3g06982' => 'bvu', 'EL10Ac5g12634' => 'bvu', 'Eucgr.A02414' => 'egr', 'Eucgr.D01977' => 'egr', 'Eucgr.D02451' => 'egr', 'Eucgr.E00481' => 'egr', 'FAN01G0871' => 'fan', 'FAN02G0701' => 'fan', 'FAN03G0983' => 'fan', 'FAN04G1796' => 'fan', 'FAN05G2730' => 'fan', 'FAN06G0869' => 'fan', 'FAN06G4857' => 'fan', 'FAN08G1546' => 'fan', 'FAN09G3015' => 'fan', 'FAN10G0480' => 'fan', 'FAN10G2374' => 'fan', 'FAN14G0736' => 'fan', 'FAN18G4230' => 'fan', 'FvH4_5g00840' => 'fve', 'FvH4_6g22920' => 'fve', 'FvH4_7g11930' => 'fve', 'Glyma.01G212700' => 'gma', 'Glyma.02G175400' => 'gma', 'Glyma.03G141500' => 'gma', 'Glyma.05G053500' => 'gma', 'Glyma.09G269000' => 'gma', 'Glyma.10G093400' => 'gma', 'Glyma.11G029100' => 'gma', 'Glyma.17G136000' => 'gma', 'Glyma.18G220800' => 'gma', 'Glyma.19G144000' => 'gma', 'Gohir.A03G011500' => 'ghi', 'Gohir.A08G134400' => 'ghi', 'Gohir.A08G174500' => 'ghi', 'Gohir.A09G125200' => 'ghi', 'Gohir.A09G194700' => 'ghi', 'Gohir.A12G221800' => 'ghi', 'Gohir.D03G158400' => 'ghi', 'Gohir.D08G155350' => 'ghi', 'Gohir.D08G193200' => 'ghi', 'Gohir.D09G122200' => 'ghi', 'Gohir.D09G189000' => 'ghi', 'Gohir.D11G085366' => 'ghi', 'Gohir.D12G224300' => 'ghi', 'Gorai.003G167000' => 'gra', 'Gorai.004G161400' => 'gra', 'Gorai.004G203400' => 'gra', 'Gorai.006G140000' => 'gra', 'Gorai.006G211700' => 'gra', 'Gorai.007G091200' => 'gra', 'Gorai.008G240400' => 'gra', 'GSVIVG01019941001' => 'vvi', 'GSVIVG01027615001' => 'vvi', 'GSVIVG01033351001' => 'vvi', 'HanXRQChr02g0046231' => 'han', 'HanXRQChr03g0093881' => 'han', 'HanXRQChr05g0132751' => 'han', 'HanXRQChr05g0132761' => 'han', 'HanXRQChr06g0176351' => 'han', 'HanXRQChr07g0188611' => 'han', 'HanXRQChr10g0291881' => 'han', 'HanXRQChr13g0417341' => 'han', 'HanXRQChr13g0425211' => 'han', 'Haze_16818' => 'cav', 'Haze_19926' => 'cav', 'Hma1.2p1_0367F.1_g137090' => 'hma', 'Hma1.2p1_0856F.1_g229070' => 'hma', 'HPP92_014949' => 'vpl', 'HPP92_014980' => 'vpl', 'HPP92_017823' => 'vpl', 'HPP92_017834' => 'vpl', 'HPP92_027174' => 'vpl', 'Hund11557' => 'sun', 'Hund14663' => 'sun', 'Hund24756' => 'sun', 'Lalb_Chr05g0214651' => 'lal', 'Lalb_Chr05g0225311' => 'lal', 'Lalb_Chr16g0379811' => 'lal', 'Lalb_Chr16g0389581' => 'lal', 'Lalb_Chr25g0287561' => 'lal', 'Lj1g0003796' => 'lja', 'Lj2g0016923' => 'lja', 'Lj4g0006806' => 'lja', 'Lj5g0003236' => 'lja', 'Lj9A570T40' => 'lonja', 'Lju124A33T33' => 'lonja', 'Lsat_1_v5_gn_3_131981' => 'lsa', 'Lsat_1_v5_gn_6_88901' => 'lsa', 'Lsat_1_v5_gn_6_9661' => 'lsa', 'Lsat_1_v5_gn_8_79420' => 'lsa', 'Lsat_1_v5_gn_9_28441' => 'lsa', 'Manes.01G072000' => 'mes', 'Manes.01G265700' => 'mes', 'Manes.02G032648' => 'mes', 'Manes.09G030700' => 'mes', 'Mapoly0124s0019' => 'mpo', 'MBI01_g36429_MAGBIO' => 'mbi', 'MBI04_g14255_MAGBIO' => 'mbi', 'MBI04_g35278_MAGBIO' => 'mbi', 'MCO13G591' => 'mco', 'MD02G1203900' => 'mdo', 'MD04G1077700' => 'mdo', 'MD06G1074200' => 'mdo', 'MD07G1122200' => 'mdo', 'MD12G1063300' => 'mdo', 'MD14G1064100' => 'mdo', 'Medtr0311s0030' => 'mtr', 'Medtr4g102010' => 'mtr', 'Medtr5g011690' => 'mtr', 'Medtr7g074930' => 'mtr', 'Medtr7g092530' => 'mtr', 'MELO3C009082.2' => 'cme', 'MELO3C013992.2' => 'cme', 'Migut.A00843' => 'egut', 'Migut.B01637' => 'egut', 'Migut.E00982' => 'egut', 'Migut.K00062' => 'egut', 'MSTRG.10831' => 'ama', 'MSTRG.12051' => 'ama', 'MSTRG.1932' => 'ama', 'MSTRG.20750' => 'ama', 'MSTRG.25555' => 'ama', 'Nitab4.5_0000016g0010' => 'nta', 'Nitab4.5_0000457g0310' => 'nta', 'Nitab4.5_0000633g0040' => 'nta', 'Nitab4.5_0001265g0020' => 'nta', 'Nitab4.5_0001329g0100' => 'nta', 'Nitab4.5_0001816g0210' => 'nta', 'Nitab4.5_0003912g0040' => 'nta', 'Nitab4.5_0005372g0010' => 'nta', 'Nitab4.5_0007130g0010' => 'nta', 'Nitab4.5_0008022g0040' => 'nta', 'Nn1g01229' => 'nnu', 'Nn2g15496' => 'nnu', 'Nn2g16004' => 'nnu', 'Nn8g40939' => 'nnu', 'Oeu026880.1' => 'oeu', 'Oeu026881.1' => 'oeu', 'Oeu033758.1' => 'oeu', 'Oeu040061.1' => 'oeu', 'Oeu056796.1' => 'oeu', 'Os06g0136500' => 'osa', 'Os12g0506400' => 'osa', 'Peaxi162Scf00051g00212' => 'pax', 'Peaxi162Scf00102g01229' => 'pax', 'Peaxi162Scf00285g00224' => 'pax', 'Peaxi162Scf00959g00317' => 'pax', 'PGR004G1477' => 'pgr', 'PGR031G0493' => 'pgr', 'PGR031G2333' => 'pgr', 'PGSC0003DMG400007015' => 'stu', 'PGSC0003DMG400012484' => 'stu', 'PGSC0003DMG400017581' => 'stu', 'PGSC0003DMG401012773' => 'stu', 'PGSC0003DMG402012773' => 'stu', 'Phvul.001G138400' => 'pvu', 'Phvul.002G151200' => 'pvu', 'Phvul.003G215700' => 'pvu', 'Phvul.007G256900' => 'pvu', 'Phvul.008G076200' => 'pvu', 'Potri.001G116100' => 'ptr', 'Potri.002G148500' => 'ptr', 'Potri.003G116400' => 'ptr', 'Potri.006G057300' => 'ptr', 'Potri.016G051000' => 'ptr', 'Pp3c11_17020' => 'ppa', 'Pp3c7_11500' => 'ppa', 'PRCOL_00001064' => 'pco', 'Prupe.2G146000' => 'ppe', 'Prupe.5G080900' => 'ppe', 'Prupe.7G070300' => 'ppe', 'Psat2g179920' => 'psa', 'Psat3g070360' => 'psa', 'Psat3g115760' => 'psa', 'Psat4g069120' => 'psa', 'Psat6g072480' => 'psa', 'PSO339G2796' => 'pso', 'PSO384G4669' => 'pso', 'PSO478G4034' => 'pso', 'PSO782G2319' => 'pso', 'QL07p022315' => 'qlo', 'QL12p015319' => 'qlo', 'QL93p1910_0004' => 'qlo', 'RcHm_v2.0_Chr1g0350611' => 'rch', 'RcHm_v2.0_Chr1g0366241' => 'rch', 'RcHm_v2.0_Chr1g0366251' => 'rch', 'RcHm_v2.0_Chr3g0480731' => 'rch', 'RcHm_v2.0_Chr3g0490911' => 'rch', 'RcHm_v2.0_Chr3g0490921' => 'rch', 'RcHm_v2.0_Chr3g0492201' => 'rch', 'RcHm_v2.0_Chr3g0492211' => 'rch', 'RcHm_v2.0_Chr7g0201081' => 'rch', 'Rhsim01G0147500' => 'rsi', 'Rhsim04G0099200' => 'rsi', 'Rhsim07G0101000' => 'rsi', 'Sabra01G0089200' => 'sbr', 'Sabra03G0080900' => 'sbr', 'Sabra06G0040400' => 'sbr', 'Sabra16G0054800' => 'sbr', 'SalBow1G6798' => 'sbo', 'SalBow1G7576' => 'sbo', 'Sc01g0009160' => 'sci', 'Sc22g0000530' => 'sci', 'Sc25g0005190' => 'sci', 'Sc25g0005480' => 'sci', 'Sed0000675' => 'sed', 'Sed0007317' => 'sed', 'Sed0012862' => 'sed', 'Sed0026529' => 'sed', 'Sed0026878' => 'sed', 'Sed0027784' => 'sed', 'SEGI_34594' => 'sgi', 'SGA_v2.0_scaffold146G36191' => 'sas', 'SGA_v2.0_scaffold196G40940' => 'sas', 'SGA_v2.0_scaffold273G46447' => 'sas', 'SGA_v2.0_scaffold37G14845' => 'sas', 'SMO115G0342' => 'smo', 'Solyc03g063970.3' => 'sly', 'Solyc05g051030.3' => 'sly', 'Solyc06g060550.3' => 'sly', 'Solyc08g007510.3' => 'sly', 'Sopen01g037110' => 'spe', 'Sopen03g017630' => 'spe', 'Sopen06g020680' => 'spe', 'Sopen08g003470' => 'spe', 'Sp1g10990' => 'spa', 'Sp2g01730' => 'spa', 'Sp3g10420' => 'spa', 'Sp6g05410' => 'spa', 'TAR104G0002' => 'tar', 'TAR369G0875' => 'tar', 'TAR374G0060' => 'tar', 'TAR375G0731' => 'tar', 'TAR633G0901' => 'tar', 'THA.LOC104809920' => 'tha', 'THA.LOC104813950' => 'tha', 'THA.LOC104818359' => 'tha', 'THA.LOC104823560' => 'tha', 'Thecc.01G375900' => 'tca', 'Thecc.03G263000' => 'tca', 'Thecc.05G165500' => 'tca', 'Thhalv10009832m.g' => 'esa', 'Thhalv10021709m.g' => 'esa', 'Thhalv10023753m.g' => 'esa', 'Thhalv10029061m.g' => 'esa', 'TPR.G25629' => 'tpr', 'TPR.G28854' => 'tpr', 'TPR.G37674' => 'tpr', 'TPR.G4708' => 'tpr', 'TPR.G57' => 'tpr', 'TWI59G0626' => 'twi', 'TWI60G0234' => 'twi', 'TWI81G0009' => 'twi', 'unitig_21.g20365' => 'ugi', 'unitig_744.g24440' => 'ugi', 'vmacro09096' => 'vma', 'vmacro14038' => 'vma', 'vmacro21006' => 'vma', 'VMungo0251G1951' => 'vmu', 'VMungo0720G1570' => 'vmu', 'VMungo1215G1929' => 'vmu', 'VMungo1383G1483' => 'vmu', 'VMungo1383G3262' => 'vmu', 'Zm00001eb264160' => 'zma', 'Zm00001eb270040' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001611' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001611' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001611' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001611' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '400', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p25880' => 'bna', 'A03p68260' => 'bna', 'A08p32850' => 'bna', 'A09p15880' => 'bna', 'Aa31LG1G2240' => 'aar', 'Aa31LG2G390' => 'aar', 'Aa31LG3G6400' => 'aar', 'Aa31LG9G10390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3371' => 'aag', 'Actinidia02077' => 'ach', 'Actinidia05249' => 'ach', 'Actinidia12690' => 'ach', 'Actinidia14474' => 'ach', 'Actinidia17251' => 'ach', 'Ah.02g116170' => 'amhyb', 'Ah.04g152060' => 'amhyb', 'AL1G23720' => 'aly', 'AL2G12850' => 'aly', 'AL3G23860' => 'aly', 'AL6G46930' => 'aly', 'Aqoxy1G00301' => 'aox', 'Aqoxy2G00113' => 'aox', 'Aqoxy7G00625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WSK7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UK8SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK4DPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8Y1RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP6HK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8KRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGG9GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTM09G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YA13V2' => 'arhy', 'AT1G12340' => 'ath', 'AT1G12390' => 'ath', 'AT3G12180' => 'ath', 'AT4G12090' => 'ath', 'ATR0605G019' => 'atr', 'ATR0810G201' => 'atr', 'Atru.chr1.944' => 'acertr', 'Atru.chr5.312' => 'acertr', 'Atru.chr9.1456' => 'acertr', 'AUR62017376' => 'cqu', 'AUR62024372' => 'cqu', 'AUR62025967' => 'cqu', 'BcaB03g13190' => 'bca', 'BcaB05g23766' => 'bca', 'BcaB07g31367' => 'bca', 'BcaB07g31813' => 'bca', 'BcaB08g34279' => 'bca', 'BcaC03g16310' => 'bca', 'BcaC04g22456' => 'bca', 'BcaC05g29274' => 'bca', 'BcaC06g31916' => 'bca', 'BcaC07g41703' => 'bca', 'BolC1t05257H' => 'bol', 'BolC2t10139H' => 'bol', 'BolC5t29823H' => 'bol', 'BolC5t34224H' => 'bol', 'BolC8t49169H' => 'bol', 'BolC9t54818H' => 'bol', 'BraA01t02642Z' => 'bra', 'BraA02t07577Z' => 'bra', 'BraA05t22510Z' => 'bra', 'BraA08t35207Z' => 'bra', 'BraA09t37223Z' => 'bra', 'BraA09t41735Z' => 'bra', 'C02p41220' => 'bna', 'C08p15410' => 'bna', 'C09p19110' => 'bna', 'CAN.G1394.36' => 'can', 'CAN.G360.14' => 'can', 'CAN.G388.11' => 'can', 'CAN.G415.4' => 'can', 'CAN.G62.59' => 'can', 'CANSAT56G0461' => 'cansat', 'CANSAT80G2271' => 'cansat', 'CANSAT80G2415' => 'cansat', 'CARHR012680' => 'chi', 'CARHR048870' => 'chi', 'CARHR086760' => 'chi', 'CARHR254130' => 'chi', 'Carub.0001s1204' => 'cru', 'Carub.0002s0212' => 'cru', 'Carub.0003s1155' => 'cru', 'Carub.0006s3121' => 'cru', 'CBR_g18650' => 'cbr', 'Cc00_g05050' => 'ccan', 'Cc00_g22700' => 'ccan', 'Cc00_g30310' => 'ccan', 'Cc02_g36670' => 'ccan', 'Cc08_g13380' => 'ccan', 'CDE04G2774' => 'cde', 'CDE12G0013' => 'cde', 'Cfa012028' => 'cfa', 'Ciclev10006138m.g' => 'ccl', 'Ciclev10022158m.g' => 'ccl', 'Ciclev10022790m.g' => 'ccl', 'CiPaw.01G261700' => 'cil', 'CiPaw.02G167500' => 'cil', 'CiPaw.10G029400' => 'cil', 'CiPaw.11G146400' => 'cil', 'CiPaw.12G103700' => 'cil', 'ClCG00G001000' => 'cla', 'ClCG00G004810' => 'cla', 'ClCG01G003550' => 'cla', 'ClCG04G000520' => 'cla', 'ClCG10G003230' => 'cla', 'COL.COLO4_28735' => 'col', 'Cpa.g.sc29.77' => 'cpa', 'Cpa.g.sc85.119' => 'cpa', 'Cre01.g036550' => 'cre', 'CsaV3_3G003260' => 'csa', 'CsaV3_4G031560' => 'csa', 'CsaV3_5G003670' => 'csa', 'CSS0000566' => 'camsi', 'CSS0009605' => 'camsi', 'CSS0034022' => 'camsi', 'CSS0037389' => 'camsi', 'CSS0049455' => 'camsi', 'DCAR_000862' => 'dca', 'Dinv18103' => 'din', 'Dinv24112' => 'din', 'Dinv32380' => 'din', 'Dinv37753' => 'din', 'Dinv39068' => 'din', 'Dinv43713' => 'din', 'Duzib068G0089' => 'dzi', 'Duzib084G1257' => 'dzi', 'Duzib093G2166' => 'dzi', 'Duzib133G0532' => 'dzi', 'Duzib138G1678' => 'dzi', 'Duzib205G0876' => 'dzi', 'ECA236G0731' => 'eca', 'ECA247G3905' => 'eca', 'EL10Ac3g06982' => 'bvu', 'EL10Ac5g12634' => 'bvu', 'Eucgr.A02414' => 'egr', 'Eucgr.D01977' => 'egr', 'Eucgr.D02451' => 'egr', 'Eucgr.E00481' => 'egr', 'FAN01G0871' => 'fan', 'FAN02G0701' => 'fan', 'FAN03G0983' => 'fan', 'FAN04G1796' => 'fan', 'FAN05G2730' => 'fan', 'FAN06G0869' => 'fan', 'FAN06G4857' => 'fan', 'FAN08G1546' => 'fan', 'FAN09G3015' => 'fan', 'FAN10G0480' => 'fan', 'FAN10G2374' => 'fan', 'FAN14G0736' => 'fan', 'FAN18G4230' => 'fan', 'FvH4_5g00840' => 'fve', 'FvH4_6g22920' => 'fve', 'FvH4_7g11930' => 'fve', 'Glyma.01G212700' => 'gma', 'Glyma.02G175400' => 'gma', 'Glyma.03G141500' => 'gma', 'Glyma.05G053500' => 'gma', 'Glyma.09G269000' => 'gma', 'Glyma.10G093400' => 'gma', 'Glyma.11G029100' => 'gma', 'Glyma.17G136000' => 'gma', 'Glyma.18G220800' => 'gma', 'Glyma.19G144000' => 'gma', 'Gohir.A03G011500' => 'ghi', 'Gohir.A08G134400' => 'ghi', 'Gohir.A08G174500' => 'ghi', 'Gohir.A09G125200' => 'ghi', 'Gohir.A09G194700' => 'ghi', 'Gohir.A12G221800' => 'ghi', 'Gohir.D03G158400' => 'ghi', 'Gohir.D08G155350' => 'ghi', 'Gohir.D08G193200' => 'ghi', 'Gohir.D09G122200' => 'ghi', 'Gohir.D09G189000' => 'ghi', 'Gohir.D11G085366' => 'ghi', 'Gohir.D12G224300' => 'ghi', 'Gorai.003G167000' => 'gra', 'Gorai.004G161400' => 'gra', 'Gorai.004G203400' => 'gra', 'Gorai.006G140000' => 'gra', 'Gorai.006G211700' => 'gra', 'Gorai.007G091200' => 'gra', 'Gorai.008G240400' => 'gra', 'GSVIVG01019941001' => 'vvi', 'GSVIVG01027615001' => 'vvi', 'GSVIVG01033351001' => 'vvi', 'HanXRQChr02g0046231' => 'han', 'HanXRQChr03g0093881' => 'han', 'HanXRQChr05g0132751' => 'han', 'HanXRQChr05g0132761' => 'han', 'HanXRQChr06g0176351' => 'han', 'HanXRQChr07g0188611' => 'han', 'HanXRQChr10g0291881' => 'han', 'HanXRQChr13g0417341' => 'han', 'HanXRQChr13g0425211' => 'han', 'Haze_16818' => 'cav', 'Haze_19926' => 'cav', 'Hma1.2p1_0367F.1_g137090' => 'hma', 'Hma1.2p1_0856F.1_g229070' => 'hma', 'HPP92_014949' => 'vpl', 'HPP92_014980' => 'vpl', 'HPP92_017823' => 'vpl', 'HPP92_017834' => 'vpl', 'HPP92_027174' => 'vpl', 'Hund11557' => 'sun', 'Hund14663' => 'sun', 'Hund24756' => 'sun', 'Lalb_Chr05g0214651' => 'lal', 'Lalb_Chr05g0225311' => 'lal', 'Lalb_Chr16g0379811' => 'lal', 'Lalb_Chr16g0389581' => 'lal', 'Lalb_Chr25g0287561' => 'lal', 'Lj1g0003796' => 'lja', 'Lj2g0016923' => 'lja', 'Lj4g0006806' => 'lja', 'Lj5g0003236' => 'lja', 'Lj9A570T40' => 'lonja', 'Lju124A33T33' => 'lonja', 'Lsat_1_v5_gn_3_131981' => 'lsa', 'Lsat_1_v5_gn_6_88901' => 'lsa', 'Lsat_1_v5_gn_6_9661' => 'lsa', 'Lsat_1_v5_gn_8_79420' => 'lsa', 'Lsat_1_v5_gn_9_28441' => 'lsa', 'Manes.01G072000' => 'mes', 'Manes.01G265700' => 'mes', 'Manes.02G032648' => 'mes', 'Manes.09G030700' => 'mes', 'Mapoly0124s0019' => 'mpo', 'MBI01_g36429_MAGBIO' => 'mbi', 'MBI04_g14255_MAGBIO' => 'mbi', 'MBI04_g35278_MAGBIO' => 'mbi', 'MCO13G591' => 'mco', 'MD02G1203900' => 'mdo', 'MD04G1077700' => 'mdo', 'MD06G1074200' => 'mdo', 'MD07G1122200' => 'mdo', 'MD12G1063300' => 'mdo', 'MD14G1064100' => 'mdo', 'Medtr0311s0030' => 'mtr', 'Medtr4g102010' => 'mtr', 'Medtr5g011690' => 'mtr', 'Medtr7g074930' => 'mtr', 'Medtr7g092530' => 'mtr', 'MELO3C009082.2' => 'cme', 'MELO3C013992.2' => 'cme', 'Migut.A00843' => 'egut', 'Migut.B01637' => 'egut', 'Migut.E00982' => 'egut', 'Migut.K00062' => 'egut', 'MSTRG.10831' => 'ama', 'MSTRG.12051' => 'ama', 'MSTRG.1932' => 'ama', 'MSTRG.20750' => 'ama', 'MSTRG.25555' => 'ama', 'Nitab4.5_0000016g0010' => 'nta', 'Nitab4.5_0000457g0310' => 'nta', 'Nitab4.5_0000633g0040' => 'nta', 'Nitab4.5_0001265g0020' => 'nta', 'Nitab4.5_0001329g0100' => 'nta', 'Nitab4.5_0001816g0210' => 'nta', 'Nitab4.5_0003912g0040' => 'nta', 'Nitab4.5_0005372g0010' => 'nta', 'Nitab4.5_0007130g0010' => 'nta', 'Nitab4.5_0008022g0040' => 'nta', 'Nn1g01229' => 'nnu', 'Nn2g15496' => 'nnu', 'Nn2g16004' => 'nnu', 'Nn8g40939' => 'nnu', 'Oeu026880.1' => 'oeu', 'Oeu026881.1' => 'oeu', 'Oeu033758.1' => 'oeu', 'Oeu040061.1' => 'oeu', 'Oeu056796.1' => 'oeu', 'Os06g0136500' => 'osa', 'Os12g0506400' => 'osa', 'Peaxi162Scf00051g00212' => 'pax', 'Peaxi162Scf00102g01229' => 'pax', 'Peaxi162Scf00285g00224' => 'pax', 'Peaxi162Scf00959g00317' => 'pax', 'PGR004G1477' => 'pgr', 'PGR031G0493' => 'pgr', 'PGR031G2333' => 'pgr', 'PGSC0003DMG400007015' => 'stu', 'PGSC0003DMG400012484' => 'stu', 'PGSC0003DMG400017581' => 'stu', 'PGSC0003DMG401012773' => 'stu', 'PGSC0003DMG402012773' => 'stu', 'Phvul.001G138400' => 'pvu', 'Phvul.002G151200' => 'pvu', 'Phvul.003G215700' => 'pvu', 'Phvul.007G256900' => 'pvu', 'Phvul.008G076200' => 'pvu', 'Potri.001G116100' => 'ptr', 'Potri.002G148500' => 'ptr', 'Potri.003G116400' => 'ptr', 'Potri.006G057300' => 'ptr', 'Potri.016G051000' => 'ptr', 'Pp3c11_17020' => 'ppa', 'Pp3c7_11500' => 'ppa', 'PRCOL_00001064' => 'pco', 'Prupe.2G146000' => 'ppe', 'Prupe.5G080900' => 'ppe', 'Prupe.7G070300' => 'ppe', 'Psat2g179920' => 'psa', 'Psat3g070360' => 'psa', 'Psat3g115760' => 'psa', 'Psat4g069120' => 'psa', 'Psat6g072480' => 'psa', 'PSO339G2796' => 'pso', 'PSO384G4669' => 'pso', 'PSO478G4034' => 'pso', 'PSO782G2319' => 'pso', 'QL07p022315' => 'qlo', 'QL12p015319' => 'qlo', 'QL93p1910_0004' => 'qlo', 'RcHm_v2.0_Chr1g0350611' => 'rch', 'RcHm_v2.0_Chr1g0366241' => 'rch', 'RcHm_v2.0_Chr1g0366251' => 'rch', 'RcHm_v2.0_Chr3g0480731' => 'rch', 'RcHm_v2.0_Chr3g0490911' => 'rch', 'RcHm_v2.0_Chr3g0490921' => 'rch', 'RcHm_v2.0_Chr3g0492201' => 'rch', 'RcHm_v2.0_Chr3g0492211' => 'rch', 'RcHm_v2.0_Chr7g0201081' => 'rch', 'Rhsim01G0147500' => 'rsi', 'Rhsim04G0099200' => 'rsi', 'Rhsim07G0101000' => 'rsi', 'Sabra01G0089200' => 'sbr', 'Sabra03G0080900' => 'sbr', 'Sabra06G0040400' => 'sbr', 'Sabra16G0054800' => 'sbr', 'SalBow1G6798' => 'sbo', 'SalBow1G7576' => 'sbo', 'Sc01g0009160' => 'sci', 'Sc22g0000530' => 'sci', 'Sc25g0005190' => 'sci', 'Sc25g0005480' => 'sci', 'Sed0000675' => 'sed', 'Sed0007317' => 'sed', 'Sed0012862' => 'sed', 'Sed0026529' => 'sed', 'Sed0026878' => 'sed', 'Sed0027784' => 'sed', 'SEGI_34594' => 'sgi', 'SGA_v2.0_scaffold146G36191' => 'sas', 'SGA_v2.0_scaffold196G40940' => 'sas', 'SGA_v2.0_scaffold273G46447' => 'sas', 'SGA_v2.0_scaffold37G14845' => 'sas', 'SMO115G0342' => 'smo', 'Solyc03g063970.3' => 'sly', 'Solyc05g051030.3' => 'sly', 'Solyc06g060550.3' => 'sly', 'Solyc08g007510.3' => 'sly', 'Sopen01g037110' => 'spe', 'Sopen03g017630' => 'spe', 'Sopen06g020680' => 'spe', 'Sopen08g003470' => 'spe', 'Sp1g10990' => 'spa', 'Sp2g01730' => 'spa', 'Sp3g10420' => 'spa', 'Sp6g05410' => 'spa', 'TAR104G0002' => 'tar', 'TAR369G0875' => 'tar', 'TAR374G0060' => 'tar', 'TAR375G0731' => 'tar', 'TAR633G0901' => 'tar', 'THA.LOC104809920' => 'tha', 'THA.LOC104813950' => 'tha', 'THA.LOC104818359' => 'tha', 'THA.LOC104823560' => 'tha', 'Thecc.01G375900' => 'tca', 'Thecc.03G263000' => 'tca', 'Thecc.05G165500' => 'tca', 'Thhalv10009832m.g' => 'esa', 'Thhalv10021709m.g' => 'esa', 'Thhalv10023753m.g' => 'esa', 'Thhalv10029061m.g' => 'esa', 'TPR.G25629' => 'tpr', 'TPR.G28854' => 'tpr', 'TPR.G37674' => 'tpr', 'TPR.G4708' => 'tpr', 'TPR.G57' => 'tpr', 'TWI59G0626' => 'twi', 'TWI60G0234' => 'twi', 'TWI81G0009' => 'twi', 'unitig_21.g20365' => 'ugi', 'unitig_744.g24440' => 'ugi', 'vmacro09096' => 'vma', 'vmacro14038' => 'vma', 'vmacro21006' => 'vma', 'VMungo0251G1951' => 'vmu', 'VMungo0720G1570' => 'vmu', 'VMungo1215G1929' => 'vmu', 'VMungo1383G1483' => 'vmu', 'VMungo1383G3262' => 'vmu', 'Zm00001eb264160' => 'zma', 'Zm00001eb270040' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001611', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001611' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '400', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001611' ) ), 'genes' => array( 'A02p25880' => 'bna', 'A03p68260' => 'bna', 'A08p32850' => 'bna', 'A09p15880' => 'bna', 'Aa31LG1G2240' => 'aar', 'Aa31LG2G390' => 'aar', 'Aa31LG3G6400' => 'aar', 'Aa31LG9G10390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3371' => 'aag', 'Actinidia02077' => 'ach', 'Actinidia05249' => 'ach', 'Actinidia12690' => 'ach', 'Actinidia14474' => 'ach', 'Actinidia17251' => 'ach', 'Ah.02g116170' => 'amhyb', 'Ah.04g152060' => 'amhyb', 'AL1G23720' => 'aly', 'AL2G12850' => 'aly', 'AL3G23860' => 'aly', 'AL6G46930' => 'aly', 'Aqoxy1G00301' => 'aox', 'Aqoxy2G00113' => 'aox', 'Aqoxy7G00625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WSK7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UK8SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK4DPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8Y1RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP6HK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8KRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGG9GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTM09G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YA13V2' => 'arhy', 'AT1G12340' => 'ath', 'AT1G12390' => 'ath', 'AT3G12180' => 'ath', 'AT4G12090' => 'ath', 'ATR0605G019' => 'atr', 'ATR0810G201' => 'atr', 'Atru.chr1.944' => 'acertr', 'Atru.chr5.312' => 'acertr', 'Atru.chr9.1456' => 'acertr', 'AUR62017376' => 'cqu', 'AUR62024372' => 'cqu', 'AUR62025967' => 'cqu', 'BcaB03g13190' => 'bca', 'BcaB05g23766' => 'bca', 'BcaB07g31367' => 'bca', 'BcaB07g31813' => 'bca', 'BcaB08g34279' => 'bca', 'BcaC03g16310' => 'bca', 'BcaC04g22456' => 'bca', 'BcaC05g29274' => 'bca', 'BcaC06g31916' => 'bca', 'BcaC07g41703' => 'bca', 'BolC1t05257H' => 'bol', 'BolC2t10139H' => 'bol', 'BolC5t29823H' => 'bol', 'BolC5t34224H' => 'bol', 'BolC8t49169H' => 'bol', 'BolC9t54818H' => 'bol', 'BraA01t02642Z' => 'bra', 'BraA02t07577Z' => 'bra', 'BraA05t22510Z' => 'bra', 'BraA08t35207Z' => 'bra', 'BraA09t37223Z' => 'bra', 'BraA09t41735Z' => 'bra', 'C02p41220' => 'bna', 'C08p15410' => 'bna', 'C09p19110' => 'bna', 'CAN.G1394.36' => 'can', 'CAN.G360.14' => 'can', 'CAN.G388.11' => 'can', 'CAN.G415.4' => 'can', 'CAN.G62.59' => 'can', 'CANSAT56G0461' => 'cansat', 'CANSAT80G2271' => 'cansat', 'CANSAT80G2415' => 'cansat', 'CARHR012680' => 'chi', 'CARHR048870' => 'chi', 'CARHR086760' => 'chi', 'CARHR254130' => 'chi', 'Carub.0001s1204' => 'cru', 'Carub.0002s0212' => 'cru', 'Carub.0003s1155' => 'cru', 'Carub.0006s3121' => 'cru', 'CBR_g18650' => 'cbr', 'Cc00_g05050' => 'ccan', 'Cc00_g22700' => 'ccan', 'Cc00_g30310' => 'ccan', 'Cc02_g36670' => 'ccan', 'Cc08_g13380' => 'ccan', 'CDE04G2774' => 'cde', 'CDE12G0013' => 'cde', 'Cfa012028' => 'cfa', 'Ciclev10006138m.g' => 'ccl', 'Ciclev10022158m.g' => 'ccl', 'Ciclev10022790m.g' => 'ccl', 'CiPaw.01G261700' => 'cil', 'CiPaw.02G167500' => 'cil', 'CiPaw.10G029400' => 'cil', 'CiPaw.11G146400' => 'cil', 'CiPaw.12G103700' => 'cil', 'ClCG00G001000' => 'cla', 'ClCG00G004810' => 'cla', 'ClCG01G003550' => 'cla', 'ClCG04G000520' => 'cla', 'ClCG10G003230' => 'cla', 'COL.COLO4_28735' => 'col', 'Cpa.g.sc29.77' => 'cpa', 'Cpa.g.sc85.119' => 'cpa', 'Cre01.g036550' => 'cre', 'CsaV3_3G003260' => 'csa', 'CsaV3_4G031560' => 'csa', 'CsaV3_5G003670' => 'csa', 'CSS0000566' => 'camsi', 'CSS0009605' => 'camsi', 'CSS0034022' => 'camsi', 'CSS0037389' => 'camsi', 'CSS0049455' => 'camsi', 'DCAR_000862' => 'dca', 'Dinv18103' => 'din', 'Dinv24112' => 'din', 'Dinv32380' => 'din', 'Dinv37753' => 'din', 'Dinv39068' => 'din', 'Dinv43713' => 'din', 'Duzib068G0089' => 'dzi', 'Duzib084G1257' => 'dzi', 'Duzib093G2166' => 'dzi', 'Duzib133G0532' => 'dzi', 'Duzib138G1678' => 'dzi', 'Duzib205G0876' => 'dzi', 'ECA236G0731' => 'eca', 'ECA247G3905' => 'eca', 'EL10Ac3g06982' => 'bvu', 'EL10Ac5g12634' => 'bvu', 'Eucgr.A02414' => 'egr', 'Eucgr.D01977' => 'egr', 'Eucgr.D02451' => 'egr', 'Eucgr.E00481' => 'egr', 'FAN01G0871' => 'fan', 'FAN02G0701' => 'fan', 'FAN03G0983' => 'fan', 'FAN04G1796' => 'fan', 'FAN05G2730' => 'fan', 'FAN06G0869' => 'fan', 'FAN06G4857' => 'fan', 'FAN08G1546' => 'fan', 'FAN09G3015' => 'fan', 'FAN10G0480' => 'fan', 'FAN10G2374' => 'fan', 'FAN14G0736' => 'fan', 'FAN18G4230' => 'fan', 'FvH4_5g00840' => 'fve', 'FvH4_6g22920' => 'fve', 'FvH4_7g11930' => 'fve', 'Glyma.01G212700' => 'gma', 'Glyma.02G175400' => 'gma', 'Glyma.03G141500' => 'gma', 'Glyma.05G053500' => 'gma', 'Glyma.09G269000' => 'gma', 'Glyma.10G093400' => 'gma', 'Glyma.11G029100' => 'gma', 'Glyma.17G136000' => 'gma', 'Glyma.18G220800' => 'gma', 'Glyma.19G144000' => 'gma', 'Gohir.A03G011500' => 'ghi', 'Gohir.A08G134400' => 'ghi', 'Gohir.A08G174500' => 'ghi', 'Gohir.A09G125200' => 'ghi', 'Gohir.A09G194700' => 'ghi', 'Gohir.A12G221800' => 'ghi', 'Gohir.D03G158400' => 'ghi', 'Gohir.D08G155350' => 'ghi', 'Gohir.D08G193200' => 'ghi', 'Gohir.D09G122200' => 'ghi', 'Gohir.D09G189000' => 'ghi', 'Gohir.D11G085366' => 'ghi', 'Gohir.D12G224300' => 'ghi', 'Gorai.003G167000' => 'gra', 'Gorai.004G161400' => 'gra', 'Gorai.004G203400' => 'gra', 'Gorai.006G140000' => 'gra', 'Gorai.006G211700' => 'gra', 'Gorai.007G091200' => 'gra', 'Gorai.008G240400' => 'gra', 'GSVIVG01019941001' => 'vvi', 'GSVIVG01027615001' => 'vvi', 'GSVIVG01033351001' => 'vvi', 'HanXRQChr02g0046231' => 'han', 'HanXRQChr03g0093881' => 'han', 'HanXRQChr05g0132751' => 'han', 'HanXRQChr05g0132761' => 'han', 'HanXRQChr06g0176351' => 'han', 'HanXRQChr07g0188611' => 'han', 'HanXRQChr10g0291881' => 'han', 'HanXRQChr13g0417341' => 'han', 'HanXRQChr13g0425211' => 'han', 'Haze_16818' => 'cav', 'Haze_19926' => 'cav', 'Hma1.2p1_0367F.1_g137090' => 'hma', 'Hma1.2p1_0856F.1_g229070' => 'hma', 'HPP92_014949' => 'vpl', 'HPP92_014980' => 'vpl', 'HPP92_017823' => 'vpl', 'HPP92_017834' => 'vpl', 'HPP92_027174' => 'vpl', 'Hund11557' => 'sun', 'Hund14663' => 'sun', 'Hund24756' => 'sun', 'Lalb_Chr05g0214651' => 'lal', 'Lalb_Chr05g0225311' => 'lal', 'Lalb_Chr16g0379811' => 'lal', 'Lalb_Chr16g0389581' => 'lal', 'Lalb_Chr25g0287561' => 'lal', 'Lj1g0003796' => 'lja', 'Lj2g0016923' => 'lja', 'Lj4g0006806' => 'lja', 'Lj5g0003236' => 'lja', 'Lj9A570T40' => 'lonja', 'Lju124A33T33' => 'lonja', 'Lsat_1_v5_gn_3_131981' => 'lsa', 'Lsat_1_v5_gn_6_88901' => 'lsa', 'Lsat_1_v5_gn_6_9661' => 'lsa', 'Lsat_1_v5_gn_8_79420' => 'lsa', 'Lsat_1_v5_gn_9_28441' => 'lsa', 'Manes.01G072000' => 'mes', 'Manes.01G265700' => 'mes', 'Manes.02G032648' => 'mes', 'Manes.09G030700' => 'mes', 'Mapoly0124s0019' => 'mpo', 'MBI01_g36429_MAGBIO' => 'mbi', 'MBI04_g14255_MAGBIO' => 'mbi', 'MBI04_g35278_MAGBIO' => 'mbi', 'MCO13G591' => 'mco', 'MD02G1203900' => 'mdo', 'MD04G1077700' => 'mdo', 'MD06G1074200' => 'mdo', 'MD07G1122200' => 'mdo', 'MD12G1063300' => 'mdo', 'MD14G1064100' => 'mdo', 'Medtr0311s0030' => 'mtr', 'Medtr4g102010' => 'mtr', 'Medtr5g011690' => 'mtr', 'Medtr7g074930' => 'mtr', 'Medtr7g092530' => 'mtr', 'MELO3C009082.2' => 'cme', 'MELO3C013992.2' => 'cme', 'Migut.A00843' => 'egut', 'Migut.B01637' => 'egut', 'Migut.E00982' => 'egut', 'Migut.K00062' => 'egut', 'MSTRG.10831' => 'ama', 'MSTRG.12051' => 'ama', 'MSTRG.1932' => 'ama', 'MSTRG.20750' => 'ama', 'MSTRG.25555' => 'ama', 'Nitab4.5_0000016g0010' => 'nta', 'Nitab4.5_0000457g0310' => 'nta', 'Nitab4.5_0000633g0040' => 'nta', 'Nitab4.5_0001265g0020' => 'nta', 'Nitab4.5_0001329g0100' => 'nta', 'Nitab4.5_0001816g0210' => 'nta', 'Nitab4.5_0003912g0040' => 'nta', 'Nitab4.5_0005372g0010' => 'nta', 'Nitab4.5_0007130g0010' => 'nta', 'Nitab4.5_0008022g0040' => 'nta', 'Nn1g01229' => 'nnu', 'Nn2g15496' => 'nnu', 'Nn2g16004' => 'nnu', 'Nn8g40939' => 'nnu', 'Oeu026880.1' => 'oeu', 'Oeu026881.1' => 'oeu', 'Oeu033758.1' => 'oeu', 'Oeu040061.1' => 'oeu', 'Oeu056796.1' => 'oeu', 'Os06g0136500' => 'osa', 'Os12g0506400' => 'osa', 'Peaxi162Scf00051g00212' => 'pax', 'Peaxi162Scf00102g01229' => 'pax', 'Peaxi162Scf00285g00224' => 'pax', 'Peaxi162Scf00959g00317' => 'pax', 'PGR004G1477' => 'pgr', 'PGR031G0493' => 'pgr', 'PGR031G2333' => 'pgr', 'PGSC0003DMG400007015' => 'stu', 'PGSC0003DMG400012484' => 'stu', 'PGSC0003DMG400017581' => 'stu', 'PGSC0003DMG401012773' => 'stu', 'PGSC0003DMG402012773' => 'stu', 'Phvul.001G138400' => 'pvu', 'Phvul.002G151200' => 'pvu', 'Phvul.003G215700' => 'pvu', 'Phvul.007G256900' => 'pvu', 'Phvul.008G076200' => 'pvu', 'Potri.001G116100' => 'ptr', 'Potri.002G148500' => 'ptr', 'Potri.003G116400' => 'ptr', 'Potri.006G057300' => 'ptr', 'Potri.016G051000' => 'ptr', 'Pp3c11_17020' => 'ppa', 'Pp3c7_11500' => 'ppa', 'PRCOL_00001064' => 'pco', 'Prupe.2G146000' => 'ppe', 'Prupe.5G080900' => 'ppe', 'Prupe.7G070300' => 'ppe', 'Psat2g179920' => 'psa', 'Psat3g070360' => 'psa', 'Psat3g115760' => 'psa', 'Psat4g069120' => 'psa', 'Psat6g072480' => 'psa', 'PSO339G2796' => 'pso', 'PSO384G4669' => 'pso', 'PSO478G4034' => 'pso', 'PSO782G2319' => 'pso', 'QL07p022315' => 'qlo', 'QL12p015319' => 'qlo', 'QL93p1910_0004' => 'qlo', 'RcHm_v2.0_Chr1g0350611' => 'rch', 'RcHm_v2.0_Chr1g0366241' => 'rch', 'RcHm_v2.0_Chr1g0366251' => 'rch', 'RcHm_v2.0_Chr3g0480731' => 'rch', 'RcHm_v2.0_Chr3g0490911' => 'rch', 'RcHm_v2.0_Chr3g0490921' => 'rch', 'RcHm_v2.0_Chr3g0492201' => 'rch', 'RcHm_v2.0_Chr3g0492211' => 'rch', 'RcHm_v2.0_Chr7g0201081' => 'rch', 'Rhsim01G0147500' => 'rsi', 'Rhsim04G0099200' => 'rsi', 'Rhsim07G0101000' => 'rsi', 'Sabra01G0089200' => 'sbr', 'Sabra03G0080900' => 'sbr', 'Sabra06G0040400' => 'sbr', 'Sabra16G0054800' => 'sbr', 'SalBow1G6798' => 'sbo', 'SalBow1G7576' => 'sbo', 'Sc01g0009160' => 'sci', 'Sc22g0000530' => 'sci', 'Sc25g0005190' => 'sci', 'Sc25g0005480' => 'sci', 'Sed0000675' => 'sed', 'Sed0007317' => 'sed', 'Sed0012862' => 'sed', 'Sed0026529' => 'sed', 'Sed0026878' => 'sed', 'Sed0027784' => 'sed', 'SEGI_34594' => 'sgi', 'SGA_v2.0_scaffold146G36191' => 'sas', 'SGA_v2.0_scaffold196G40940' => 'sas', 'SGA_v2.0_scaffold273G46447' => 'sas', 'SGA_v2.0_scaffold37G14845' => 'sas', 'SMO115G0342' => 'smo', 'Solyc03g063970.3' => 'sly', 'Solyc05g051030.3' => 'sly', 'Solyc06g060550.3' => 'sly', 'Solyc08g007510.3' => 'sly', 'Sopen01g037110' => 'spe', 'Sopen03g017630' => 'spe', 'Sopen06g020680' => 'spe', 'Sopen08g003470' => 'spe', 'Sp1g10990' => 'spa', 'Sp2g01730' => 'spa', 'Sp3g10420' => 'spa', 'Sp6g05410' => 'spa', 'TAR104G0002' => 'tar', 'TAR369G0875' => 'tar', 'TAR374G0060' => 'tar', 'TAR375G0731' => 'tar', 'TAR633G0901' => 'tar', 'THA.LOC104809920' => 'tha', 'THA.LOC104813950' => 'tha', 'THA.LOC104818359' => 'tha', 'THA.LOC104823560' => 'tha', 'Thecc.01G375900' => 'tca', 'Thecc.03G263000' => 'tca', 'Thecc.05G165500' => 'tca', 'Thhalv10009832m.g' => 'esa', 'Thhalv10021709m.g' => 'esa', 'Thhalv10023753m.g' => 'esa', 'Thhalv10029061m.g' => 'esa', 'TPR.G25629' => 'tpr', 'TPR.G28854' => 'tpr', 'TPR.G37674' => 'tpr', 'TPR.G4708' => 'tpr', 'TPR.G57' => 'tpr', 'TWI59G0626' => 'twi', 'TWI60G0234' => 'twi', 'TWI81G0009' => 'twi', 'unitig_21.g20365' => 'ugi', 'unitig_744.g24440' => 'ugi', 'vmacro09096' => 'vma', 'vmacro14038' => 'vma', 'vmacro21006' => 'vma', 'VMungo0251G1951' => 'vmu', 'VMungo0720G1570' => 'vmu', 'VMungo1215G1929' => 'vmu', 'VMungo1383G1483' => 'vmu', 'VMungo1383G3262' => 'vmu', 'Zm00001eb264160' => 'zma', 'Zm00001eb270040' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001611' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001611' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001611' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001611' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '400', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p25880' => 'bna', 'A03p68260' => 'bna', 'A08p32850' => 'bna', 'A09p15880' => 'bna', 'Aa31LG1G2240' => 'aar', 'Aa31LG2G390' => 'aar', 'Aa31LG3G6400' => 'aar', 'Aa31LG9G10390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3371' => 'aag', 'Actinidia02077' => 'ach', 'Actinidia05249' => 'ach', 'Actinidia12690' => 'ach', 'Actinidia14474' => 'ach', 'Actinidia17251' => 'ach', 'Ah.02g116170' => 'amhyb', 'Ah.04g152060' => 'amhyb', 'AL1G23720' => 'aly', 'AL2G12850' => 'aly', 'AL3G23860' => 'aly', 'AL6G46930' => 'aly', 'Aqoxy1G00301' => 'aox', 'Aqoxy2G00113' => 'aox', 'Aqoxy7G00625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WSK7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UK8SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK4DPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8Y1RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP6HK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8KRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGG9GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTM09G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YA13V2' => 'arhy', 'AT1G12340' => 'ath', 'AT1G12390' => 'ath', 'AT3G12180' => 'ath', 'AT4G12090' => 'ath', 'ATR0605G019' => 'atr', 'ATR0810G201' => 'atr', 'Atru.chr1.944' => 'acertr', 'Atru.chr5.312' => 'acertr', 'Atru.chr9.1456' => 'acertr', 'AUR62017376' => 'cqu', 'AUR62024372' => 'cqu', 'AUR62025967' => 'cqu', 'BcaB03g13190' => 'bca', 'BcaB05g23766' => 'bca', 'BcaB07g31367' => 'bca', 'BcaB07g31813' => 'bca', 'BcaB08g34279' => 'bca', 'BcaC03g16310' => 'bca', 'BcaC04g22456' => 'bca', 'BcaC05g29274' => 'bca', 'BcaC06g31916' => 'bca', 'BcaC07g41703' => 'bca', 'BolC1t05257H' => 'bol', 'BolC2t10139H' => 'bol', 'BolC5t29823H' => 'bol', 'BolC5t34224H' => 'bol', 'BolC8t49169H' => 'bol', 'BolC9t54818H' => 'bol', 'BraA01t02642Z' => 'bra', 'BraA02t07577Z' => 'bra', 'BraA05t22510Z' => 'bra', 'BraA08t35207Z' => 'bra', 'BraA09t37223Z' => 'bra', 'BraA09t41735Z' => 'bra', 'C02p41220' => 'bna', 'C08p15410' => 'bna', 'C09p19110' => 'bna', 'CAN.G1394.36' => 'can', 'CAN.G360.14' => 'can', 'CAN.G388.11' => 'can', 'CAN.G415.4' => 'can', 'CAN.G62.59' => 'can', 'CANSAT56G0461' => 'cansat', 'CANSAT80G2271' => 'cansat', 'CANSAT80G2415' => 'cansat', 'CARHR012680' => 'chi', 'CARHR048870' => 'chi', 'CARHR086760' => 'chi', 'CARHR254130' => 'chi', 'Carub.0001s1204' => 'cru', 'Carub.0002s0212' => 'cru', 'Carub.0003s1155' => 'cru', 'Carub.0006s3121' => 'cru', 'CBR_g18650' => 'cbr', 'Cc00_g05050' => 'ccan', 'Cc00_g22700' => 'ccan', 'Cc00_g30310' => 'ccan', 'Cc02_g36670' => 'ccan', 'Cc08_g13380' => 'ccan', 'CDE04G2774' => 'cde', 'CDE12G0013' => 'cde', 'Cfa012028' => 'cfa', 'Ciclev10006138m.g' => 'ccl', 'Ciclev10022158m.g' => 'ccl', 'Ciclev10022790m.g' => 'ccl', 'CiPaw.01G261700' => 'cil', 'CiPaw.02G167500' => 'cil', 'CiPaw.10G029400' => 'cil', 'CiPaw.11G146400' => 'cil', 'CiPaw.12G103700' => 'cil', 'ClCG00G001000' => 'cla', 'ClCG00G004810' => 'cla', 'ClCG01G003550' => 'cla', 'ClCG04G000520' => 'cla', 'ClCG10G003230' => 'cla', 'COL.COLO4_28735' => 'col', 'Cpa.g.sc29.77' => 'cpa', 'Cpa.g.sc85.119' => 'cpa', 'Cre01.g036550' => 'cre', 'CsaV3_3G003260' => 'csa', 'CsaV3_4G031560' => 'csa', 'CsaV3_5G003670' => 'csa', 'CSS0000566' => 'camsi', 'CSS0009605' => 'camsi', 'CSS0034022' => 'camsi', 'CSS0037389' => 'camsi', 'CSS0049455' => 'camsi', 'DCAR_000862' => 'dca', 'Dinv18103' => 'din', 'Dinv24112' => 'din', 'Dinv32380' => 'din', 'Dinv37753' => 'din', 'Dinv39068' => 'din', 'Dinv43713' => 'din', 'Duzib068G0089' => 'dzi', 'Duzib084G1257' => 'dzi', 'Duzib093G2166' => 'dzi', 'Duzib133G0532' => 'dzi', 'Duzib138G1678' => 'dzi', 'Duzib205G0876' => 'dzi', 'ECA236G0731' => 'eca', 'ECA247G3905' => 'eca', 'EL10Ac3g06982' => 'bvu', 'EL10Ac5g12634' => 'bvu', 'Eucgr.A02414' => 'egr', 'Eucgr.D01977' => 'egr', 'Eucgr.D02451' => 'egr', 'Eucgr.E00481' => 'egr', 'FAN01G0871' => 'fan', 'FAN02G0701' => 'fan', 'FAN03G0983' => 'fan', 'FAN04G1796' => 'fan', 'FAN05G2730' => 'fan', 'FAN06G0869' => 'fan', 'FAN06G4857' => 'fan', 'FAN08G1546' => 'fan', 'FAN09G3015' => 'fan', 'FAN10G0480' => 'fan', 'FAN10G2374' => 'fan', 'FAN14G0736' => 'fan', 'FAN18G4230' => 'fan', 'FvH4_5g00840' => 'fve', 'FvH4_6g22920' => 'fve', 'FvH4_7g11930' => 'fve', 'Glyma.01G212700' => 'gma', 'Glyma.02G175400' => 'gma', 'Glyma.03G141500' => 'gma', 'Glyma.05G053500' => 'gma', 'Glyma.09G269000' => 'gma', 'Glyma.10G093400' => 'gma', 'Glyma.11G029100' => 'gma', 'Glyma.17G136000' => 'gma', 'Glyma.18G220800' => 'gma', 'Glyma.19G144000' => 'gma', 'Gohir.A03G011500' => 'ghi', 'Gohir.A08G134400' => 'ghi', 'Gohir.A08G174500' => 'ghi', 'Gohir.A09G125200' => 'ghi', 'Gohir.A09G194700' => 'ghi', 'Gohir.A12G221800' => 'ghi', 'Gohir.D03G158400' => 'ghi', 'Gohir.D08G155350' => 'ghi', 'Gohir.D08G193200' => 'ghi', 'Gohir.D09G122200' => 'ghi', 'Gohir.D09G189000' => 'ghi', 'Gohir.D11G085366' => 'ghi', 'Gohir.D12G224300' => 'ghi', 'Gorai.003G167000' => 'gra', 'Gorai.004G161400' => 'gra', 'Gorai.004G203400' => 'gra', 'Gorai.006G140000' => 'gra', 'Gorai.006G211700' => 'gra', 'Gorai.007G091200' => 'gra', 'Gorai.008G240400' => 'gra', 'GSVIVG01019941001' => 'vvi', 'GSVIVG01027615001' => 'vvi', 'GSVIVG01033351001' => 'vvi', 'HanXRQChr02g0046231' => 'han', 'HanXRQChr03g0093881' => 'han', 'HanXRQChr05g0132751' => 'han', 'HanXRQChr05g0132761' => 'han', 'HanXRQChr06g0176351' => 'han', 'HanXRQChr07g0188611' => 'han', 'HanXRQChr10g0291881' => 'han', 'HanXRQChr13g0417341' => 'han', 'HanXRQChr13g0425211' => 'han', 'Haze_16818' => 'cav', 'Haze_19926' => 'cav', 'Hma1.2p1_0367F.1_g137090' => 'hma', 'Hma1.2p1_0856F.1_g229070' => 'hma', 'HPP92_014949' => 'vpl', 'HPP92_014980' => 'vpl', 'HPP92_017823' => 'vpl', 'HPP92_017834' => 'vpl', 'HPP92_027174' => 'vpl', 'Hund11557' => 'sun', 'Hund14663' => 'sun', 'Hund24756' => 'sun', 'Lalb_Chr05g0214651' => 'lal', 'Lalb_Chr05g0225311' => 'lal', 'Lalb_Chr16g0379811' => 'lal', 'Lalb_Chr16g0389581' => 'lal', 'Lalb_Chr25g0287561' => 'lal', 'Lj1g0003796' => 'lja', 'Lj2g0016923' => 'lja', 'Lj4g0006806' => 'lja', 'Lj5g0003236' => 'lja', 'Lj9A570T40' => 'lonja', 'Lju124A33T33' => 'lonja', 'Lsat_1_v5_gn_3_131981' => 'lsa', 'Lsat_1_v5_gn_6_88901' => 'lsa', 'Lsat_1_v5_gn_6_9661' => 'lsa', 'Lsat_1_v5_gn_8_79420' => 'lsa', 'Lsat_1_v5_gn_9_28441' => 'lsa', 'Manes.01G072000' => 'mes', 'Manes.01G265700' => 'mes', 'Manes.02G032648' => 'mes', 'Manes.09G030700' => 'mes', 'Mapoly0124s0019' => 'mpo', 'MBI01_g36429_MAGBIO' => 'mbi', 'MBI04_g14255_MAGBIO' => 'mbi', 'MBI04_g35278_MAGBIO' => 'mbi', 'MCO13G591' => 'mco', 'MD02G1203900' => 'mdo', 'MD04G1077700' => 'mdo', 'MD06G1074200' => 'mdo', 'MD07G1122200' => 'mdo', 'MD12G1063300' => 'mdo', 'MD14G1064100' => 'mdo', 'Medtr0311s0030' => 'mtr', 'Medtr4g102010' => 'mtr', 'Medtr5g011690' => 'mtr', 'Medtr7g074930' => 'mtr', 'Medtr7g092530' => 'mtr', 'MELO3C009082.2' => 'cme', 'MELO3C013992.2' => 'cme', 'Migut.A00843' => 'egut', 'Migut.B01637' => 'egut', 'Migut.E00982' => 'egut', 'Migut.K00062' => 'egut', 'MSTRG.10831' => 'ama', 'MSTRG.12051' => 'ama', 'MSTRG.1932' => 'ama', 'MSTRG.20750' => 'ama', 'MSTRG.25555' => 'ama', 'Nitab4.5_0000016g0010' => 'nta', 'Nitab4.5_0000457g0310' => 'nta', 'Nitab4.5_0000633g0040' => 'nta', 'Nitab4.5_0001265g0020' => 'nta', 'Nitab4.5_0001329g0100' => 'nta', 'Nitab4.5_0001816g0210' => 'nta', 'Nitab4.5_0003912g0040' => 'nta', 'Nitab4.5_0005372g0010' => 'nta', 'Nitab4.5_0007130g0010' => 'nta', 'Nitab4.5_0008022g0040' => 'nta', 'Nn1g01229' => 'nnu', 'Nn2g15496' => 'nnu', 'Nn2g16004' => 'nnu', 'Nn8g40939' => 'nnu', 'Oeu026880.1' => 'oeu', 'Oeu026881.1' => 'oeu', 'Oeu033758.1' => 'oeu', 'Oeu040061.1' => 'oeu', 'Oeu056796.1' => 'oeu', 'Os06g0136500' => 'osa', 'Os12g0506400' => 'osa', 'Peaxi162Scf00051g00212' => 'pax', 'Peaxi162Scf00102g01229' => 'pax', 'Peaxi162Scf00285g00224' => 'pax', 'Peaxi162Scf00959g00317' => 'pax', 'PGR004G1477' => 'pgr', 'PGR031G0493' => 'pgr', 'PGR031G2333' => 'pgr', 'PGSC0003DMG400007015' => 'stu', 'PGSC0003DMG400012484' => 'stu', 'PGSC0003DMG400017581' => 'stu', 'PGSC0003DMG401012773' => 'stu', 'PGSC0003DMG402012773' => 'stu', 'Phvul.001G138400' => 'pvu', 'Phvul.002G151200' => 'pvu', 'Phvul.003G215700' => 'pvu', 'Phvul.007G256900' => 'pvu', 'Phvul.008G076200' => 'pvu', 'Potri.001G116100' => 'ptr', 'Potri.002G148500' => 'ptr', 'Potri.003G116400' => 'ptr', 'Potri.006G057300' => 'ptr', 'Potri.016G051000' => 'ptr', 'Pp3c11_17020' => 'ppa', 'Pp3c7_11500' => 'ppa', 'PRCOL_00001064' => 'pco', 'Prupe.2G146000' => 'ppe', 'Prupe.5G080900' => 'ppe', 'Prupe.7G070300' => 'ppe', 'Psat2g179920' => 'psa', 'Psat3g070360' => 'psa', 'Psat3g115760' => 'psa', 'Psat4g069120' => 'psa', 'Psat6g072480' => 'psa', 'PSO339G2796' => 'pso', 'PSO384G4669' => 'pso', 'PSO478G4034' => 'pso', 'PSO782G2319' => 'pso', 'QL07p022315' => 'qlo', 'QL12p015319' => 'qlo', 'QL93p1910_0004' => 'qlo', 'RcHm_v2.0_Chr1g0350611' => 'rch', 'RcHm_v2.0_Chr1g0366241' => 'rch', 'RcHm_v2.0_Chr1g0366251' => 'rch', 'RcHm_v2.0_Chr3g0480731' => 'rch', 'RcHm_v2.0_Chr3g0490911' => 'rch', 'RcHm_v2.0_Chr3g0490921' => 'rch', 'RcHm_v2.0_Chr3g0492201' => 'rch', 'RcHm_v2.0_Chr3g0492211' => 'rch', 'RcHm_v2.0_Chr7g0201081' => 'rch', 'Rhsim01G0147500' => 'rsi', 'Rhsim04G0099200' => 'rsi', 'Rhsim07G0101000' => 'rsi', 'Sabra01G0089200' => 'sbr', 'Sabra03G0080900' => 'sbr', 'Sabra06G0040400' => 'sbr', 'Sabra16G0054800' => 'sbr', 'SalBow1G6798' => 'sbo', 'SalBow1G7576' => 'sbo', 'Sc01g0009160' => 'sci', 'Sc22g0000530' => 'sci', 'Sc25g0005190' => 'sci', 'Sc25g0005480' => 'sci', 'Sed0000675' => 'sed', 'Sed0007317' => 'sed', 'Sed0012862' => 'sed', 'Sed0026529' => 'sed', 'Sed0026878' => 'sed', 'Sed0027784' => 'sed', 'SEGI_34594' => 'sgi', 'SGA_v2.0_scaffold146G36191' => 'sas', 'SGA_v2.0_scaffold196G40940' => 'sas', 'SGA_v2.0_scaffold273G46447' => 'sas', 'SGA_v2.0_scaffold37G14845' => 'sas', 'SMO115G0342' => 'smo', 'Solyc03g063970.3' => 'sly', 'Solyc05g051030.3' => 'sly', 'Solyc06g060550.3' => 'sly', 'Solyc08g007510.3' => 'sly', 'Sopen01g037110' => 'spe', 'Sopen03g017630' => 'spe', 'Sopen06g020680' => 'spe', 'Sopen08g003470' => 'spe', 'Sp1g10990' => 'spa', 'Sp2g01730' => 'spa', 'Sp3g10420' => 'spa', 'Sp6g05410' => 'spa', 'TAR104G0002' => 'tar', 'TAR369G0875' => 'tar', 'TAR374G0060' => 'tar', 'TAR375G0731' => 'tar', 'TAR633G0901' => 'tar', 'THA.LOC104809920' => 'tha', 'THA.LOC104813950' => 'tha', 'THA.LOC104818359' => 'tha', 'THA.LOC104823560' => 'tha', 'Thecc.01G375900' => 'tca', 'Thecc.03G263000' => 'tca', 'Thecc.05G165500' => 'tca', 'Thhalv10009832m.g' => 'esa', 'Thhalv10021709m.g' => 'esa', 'Thhalv10023753m.g' => 'esa', 'Thhalv10029061m.g' => 'esa', 'TPR.G25629' => 'tpr', 'TPR.G28854' => 'tpr', 'TPR.G37674' => 'tpr', 'TPR.G4708' => 'tpr', 'TPR.G57' => 'tpr', 'TWI59G0626' => 'twi', 'TWI60G0234' => 'twi', 'TWI81G0009' => 'twi', 'unitig_21.g20365' => 'ugi', 'unitig_744.g24440' => 'ugi', 'vmacro09096' => 'vma', 'vmacro14038' => 'vma', 'vmacro21006' => 'vma', 'VMungo0251G1951' => 'vmu', 'VMungo0720G1570' => 'vmu', 'VMungo1215G1929' => 'vmu', 'VMungo1383G1483' => 'vmu', 'VMungo1383G3262' => 'vmu', 'Zm00001eb264160' => 'zma', 'Zm00001eb270040' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001611', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001611' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '400', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001611' ) ), 'genes' => array( 'A02p25880' => 'bna', 'A03p68260' => 'bna', 'A08p32850' => 'bna', 'A09p15880' => 'bna', 'Aa31LG1G2240' => 'aar', 'Aa31LG2G390' => 'aar', 'Aa31LG3G6400' => 'aar', 'Aa31LG9G10390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3371' => 'aag', 'Actinidia02077' => 'ach', 'Actinidia05249' => 'ach', 'Actinidia12690' => 'ach', 'Actinidia14474' => 'ach', 'Actinidia17251' => 'ach', 'Ah.02g116170' => 'amhyb', 'Ah.04g152060' => 'amhyb', 'AL1G23720' => 'aly', 'AL2G12850' => 'aly', 'AL3G23860' => 'aly', 'AL6G46930' => 'aly', 'Aqoxy1G00301' => 'aox', 'Aqoxy2G00113' => 'aox', 'Aqoxy7G00625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WSK7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UK8SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK4DPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8Y1RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP6HK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8KRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGG9GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTM09G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YA13V2' => 'arhy', 'AT1G12340' => 'ath', 'AT1G12390' => 'ath', 'AT3G12180' => 'ath', 'AT4G12090' => 'ath', 'ATR0605G019' => 'atr', 'ATR0810G201' => 'atr', 'Atru.chr1.944' => 'acertr', 'Atru.chr5.312' => 'acertr', 'Atru.chr9.1456' => 'acertr', 'AUR62017376' => 'cqu', 'AUR62024372' => 'cqu', 'AUR62025967' => 'cqu', 'BcaB03g13190' => 'bca', 'BcaB05g23766' => 'bca', 'BcaB07g31367' => 'bca', 'BcaB07g31813' => 'bca', 'BcaB08g34279' => 'bca', 'BcaC03g16310' => 'bca', 'BcaC04g22456' => 'bca', 'BcaC05g29274' => 'bca', 'BcaC06g31916' => 'bca', 'BcaC07g41703' => 'bca', 'BolC1t05257H' => 'bol', 'BolC2t10139H' => 'bol', 'BolC5t29823H' => 'bol', 'BolC5t34224H' => 'bol', 'BolC8t49169H' => 'bol', 'BolC9t54818H' => 'bol', 'BraA01t02642Z' => 'bra', 'BraA02t07577Z' => 'bra', 'BraA05t22510Z' => 'bra', 'BraA08t35207Z' => 'bra', 'BraA09t37223Z' => 'bra', 'BraA09t41735Z' => 'bra', 'C02p41220' => 'bna', 'C08p15410' => 'bna', 'C09p19110' => 'bna', 'CAN.G1394.36' => 'can', 'CAN.G360.14' => 'can', 'CAN.G388.11' => 'can', 'CAN.G415.4' => 'can', 'CAN.G62.59' => 'can', 'CANSAT56G0461' => 'cansat', 'CANSAT80G2271' => 'cansat', 'CANSAT80G2415' => 'cansat', 'CARHR012680' => 'chi', 'CARHR048870' => 'chi', 'CARHR086760' => 'chi', 'CARHR254130' => 'chi', 'Carub.0001s1204' => 'cru', 'Carub.0002s0212' => 'cru', 'Carub.0003s1155' => 'cru', 'Carub.0006s3121' => 'cru', 'CBR_g18650' => 'cbr', 'Cc00_g05050' => 'ccan', 'Cc00_g22700' => 'ccan', 'Cc00_g30310' => 'ccan', 'Cc02_g36670' => 'ccan', 'Cc08_g13380' => 'ccan', 'CDE04G2774' => 'cde', 'CDE12G0013' => 'cde', 'Cfa012028' => 'cfa', 'Ciclev10006138m.g' => 'ccl', 'Ciclev10022158m.g' => 'ccl', 'Ciclev10022790m.g' => 'ccl', 'CiPaw.01G261700' => 'cil', 'CiPaw.02G167500' => 'cil', 'CiPaw.10G029400' => 'cil', 'CiPaw.11G146400' => 'cil', 'CiPaw.12G103700' => 'cil', 'ClCG00G001000' => 'cla', 'ClCG00G004810' => 'cla', 'ClCG01G003550' => 'cla', 'ClCG04G000520' => 'cla', 'ClCG10G003230' => 'cla', 'COL.COLO4_28735' => 'col', 'Cpa.g.sc29.77' => 'cpa', 'Cpa.g.sc85.119' => 'cpa', 'Cre01.g036550' => 'cre', 'CsaV3_3G003260' => 'csa', 'CsaV3_4G031560' => 'csa', 'CsaV3_5G003670' => 'csa', 'CSS0000566' => 'camsi', 'CSS0009605' => 'camsi', 'CSS0034022' => 'camsi', 'CSS0037389' => 'camsi', 'CSS0049455' => 'camsi', 'DCAR_000862' => 'dca', 'Dinv18103' => 'din', 'Dinv24112' => 'din', 'Dinv32380' => 'din', 'Dinv37753' => 'din', 'Dinv39068' => 'din', 'Dinv43713' => 'din', 'Duzib068G0089' => 'dzi', 'Duzib084G1257' => 'dzi', 'Duzib093G2166' => 'dzi', 'Duzib133G0532' => 'dzi', 'Duzib138G1678' => 'dzi', 'Duzib205G0876' => 'dzi', 'ECA236G0731' => 'eca', 'ECA247G3905' => 'eca', 'EL10Ac3g06982' => 'bvu', 'EL10Ac5g12634' => 'bvu', 'Eucgr.A02414' => 'egr', 'Eucgr.D01977' => 'egr', 'Eucgr.D02451' => 'egr', 'Eucgr.E00481' => 'egr', 'FAN01G0871' => 'fan', 'FAN02G0701' => 'fan', 'FAN03G0983' => 'fan', 'FAN04G1796' => 'fan', 'FAN05G2730' => 'fan', 'FAN06G0869' => 'fan', 'FAN06G4857' => 'fan', 'FAN08G1546' => 'fan', 'FAN09G3015' => 'fan', 'FAN10G0480' => 'fan', 'FAN10G2374' => 'fan', 'FAN14G0736' => 'fan', 'FAN18G4230' => 'fan', 'FvH4_5g00840' => 'fve', 'FvH4_6g22920' => 'fve', 'FvH4_7g11930' => 'fve', 'Glyma.01G212700' => 'gma', 'Glyma.02G175400' => 'gma', 'Glyma.03G141500' => 'gma', 'Glyma.05G053500' => 'gma', 'Glyma.09G269000' => 'gma', 'Glyma.10G093400' => 'gma', 'Glyma.11G029100' => 'gma', 'Glyma.17G136000' => 'gma', 'Glyma.18G220800' => 'gma', 'Glyma.19G144000' => 'gma', 'Gohir.A03G011500' => 'ghi', 'Gohir.A08G134400' => 'ghi', 'Gohir.A08G174500' => 'ghi', 'Gohir.A09G125200' => 'ghi', 'Gohir.A09G194700' => 'ghi', 'Gohir.A12G221800' => 'ghi', 'Gohir.D03G158400' => 'ghi', 'Gohir.D08G155350' => 'ghi', 'Gohir.D08G193200' => 'ghi', 'Gohir.D09G122200' => 'ghi', 'Gohir.D09G189000' => 'ghi', 'Gohir.D11G085366' => 'ghi', 'Gohir.D12G224300' => 'ghi', 'Gorai.003G167000' => 'gra', 'Gorai.004G161400' => 'gra', 'Gorai.004G203400' => 'gra', 'Gorai.006G140000' => 'gra', 'Gorai.006G211700' => 'gra', 'Gorai.007G091200' => 'gra', 'Gorai.008G240400' => 'gra', 'GSVIVG01019941001' => 'vvi', 'GSVIVG01027615001' => 'vvi', 'GSVIVG01033351001' => 'vvi', 'HanXRQChr02g0046231' => 'han', 'HanXRQChr03g0093881' => 'han', 'HanXRQChr05g0132751' => 'han', 'HanXRQChr05g0132761' => 'han', 'HanXRQChr06g0176351' => 'han', 'HanXRQChr07g0188611' => 'han', 'HanXRQChr10g0291881' => 'han', 'HanXRQChr13g0417341' => 'han', 'HanXRQChr13g0425211' => 'han', 'Haze_16818' => 'cav', 'Haze_19926' => 'cav', 'Hma1.2p1_0367F.1_g137090' => 'hma', 'Hma1.2p1_0856F.1_g229070' => 'hma', 'HPP92_014949' => 'vpl', 'HPP92_014980' => 'vpl', 'HPP92_017823' => 'vpl', 'HPP92_017834' => 'vpl', 'HPP92_027174' => 'vpl', 'Hund11557' => 'sun', 'Hund14663' => 'sun', 'Hund24756' => 'sun', 'Lalb_Chr05g0214651' => 'lal', 'Lalb_Chr05g0225311' => 'lal', 'Lalb_Chr16g0379811' => 'lal', 'Lalb_Chr16g0389581' => 'lal', 'Lalb_Chr25g0287561' => 'lal', 'Lj1g0003796' => 'lja', 'Lj2g0016923' => 'lja', 'Lj4g0006806' => 'lja', 'Lj5g0003236' => 'lja', 'Lj9A570T40' => 'lonja', 'Lju124A33T33' => 'lonja', 'Lsat_1_v5_gn_3_131981' => 'lsa', 'Lsat_1_v5_gn_6_88901' => 'lsa', 'Lsat_1_v5_gn_6_9661' => 'lsa', 'Lsat_1_v5_gn_8_79420' => 'lsa', 'Lsat_1_v5_gn_9_28441' => 'lsa', 'Manes.01G072000' => 'mes', 'Manes.01G265700' => 'mes', 'Manes.02G032648' => 'mes', 'Manes.09G030700' => 'mes', 'Mapoly0124s0019' => 'mpo', 'MBI01_g36429_MAGBIO' => 'mbi', 'MBI04_g14255_MAGBIO' => 'mbi', 'MBI04_g35278_MAGBIO' => 'mbi', 'MCO13G591' => 'mco', 'MD02G1203900' => 'mdo', 'MD04G1077700' => 'mdo', 'MD06G1074200' => 'mdo', 'MD07G1122200' => 'mdo', 'MD12G1063300' => 'mdo', 'MD14G1064100' => 'mdo', 'Medtr0311s0030' => 'mtr', 'Medtr4g102010' => 'mtr', 'Medtr5g011690' => 'mtr', 'Medtr7g074930' => 'mtr', 'Medtr7g092530' => 'mtr', 'MELO3C009082.2' => 'cme', 'MELO3C013992.2' => 'cme', 'Migut.A00843' => 'egut', 'Migut.B01637' => 'egut', 'Migut.E00982' => 'egut', 'Migut.K00062' => 'egut', 'MSTRG.10831' => 'ama', 'MSTRG.12051' => 'ama', 'MSTRG.1932' => 'ama', 'MSTRG.20750' => 'ama', 'MSTRG.25555' => 'ama', 'Nitab4.5_0000016g0010' => 'nta', 'Nitab4.5_0000457g0310' => 'nta', 'Nitab4.5_0000633g0040' => 'nta', 'Nitab4.5_0001265g0020' => 'nta', 'Nitab4.5_0001329g0100' => 'nta', 'Nitab4.5_0001816g0210' => 'nta', 'Nitab4.5_0003912g0040' => 'nta', 'Nitab4.5_0005372g0010' => 'nta', 'Nitab4.5_0007130g0010' => 'nta', 'Nitab4.5_0008022g0040' => 'nta', 'Nn1g01229' => 'nnu', 'Nn2g15496' => 'nnu', 'Nn2g16004' => 'nnu', 'Nn8g40939' => 'nnu', 'Oeu026880.1' => 'oeu', 'Oeu026881.1' => 'oeu', 'Oeu033758.1' => 'oeu', 'Oeu040061.1' => 'oeu', 'Oeu056796.1' => 'oeu', 'Os06g0136500' => 'osa', 'Os12g0506400' => 'osa', 'Peaxi162Scf00051g00212' => 'pax', 'Peaxi162Scf00102g01229' => 'pax', 'Peaxi162Scf00285g00224' => 'pax', 'Peaxi162Scf00959g00317' => 'pax', 'PGR004G1477' => 'pgr', 'PGR031G0493' => 'pgr', 'PGR031G2333' => 'pgr', 'PGSC0003DMG400007015' => 'stu', 'PGSC0003DMG400012484' => 'stu', 'PGSC0003DMG400017581' => 'stu', 'PGSC0003DMG401012773' => 'stu', 'PGSC0003DMG402012773' => 'stu', 'Phvul.001G138400' => 'pvu', 'Phvul.002G151200' => 'pvu', 'Phvul.003G215700' => 'pvu', 'Phvul.007G256900' => 'pvu', 'Phvul.008G076200' => 'pvu', 'Potri.001G116100' => 'ptr', 'Potri.002G148500' => 'ptr', 'Potri.003G116400' => 'ptr', 'Potri.006G057300' => 'ptr', 'Potri.016G051000' => 'ptr', 'Pp3c11_17020' => 'ppa', 'Pp3c7_11500' => 'ppa', 'PRCOL_00001064' => 'pco', 'Prupe.2G146000' => 'ppe', 'Prupe.5G080900' => 'ppe', 'Prupe.7G070300' => 'ppe', 'Psat2g179920' => 'psa', 'Psat3g070360' => 'psa', 'Psat3g115760' => 'psa', 'Psat4g069120' => 'psa', 'Psat6g072480' => 'psa', 'PSO339G2796' => 'pso', 'PSO384G4669' => 'pso', 'PSO478G4034' => 'pso', 'PSO782G2319' => 'pso', 'QL07p022315' => 'qlo', 'QL12p015319' => 'qlo', 'QL93p1910_0004' => 'qlo', 'RcHm_v2.0_Chr1g0350611' => 'rch', 'RcHm_v2.0_Chr1g0366241' => 'rch', 'RcHm_v2.0_Chr1g0366251' => 'rch', 'RcHm_v2.0_Chr3g0480731' => 'rch', 'RcHm_v2.0_Chr3g0490911' => 'rch', 'RcHm_v2.0_Chr3g0490921' => 'rch', 'RcHm_v2.0_Chr3g0492201' => 'rch', 'RcHm_v2.0_Chr3g0492211' => 'rch', 'RcHm_v2.0_Chr7g0201081' => 'rch', 'Rhsim01G0147500' => 'rsi', 'Rhsim04G0099200' => 'rsi', 'Rhsim07G0101000' => 'rsi', 'Sabra01G0089200' => 'sbr', 'Sabra03G0080900' => 'sbr', 'Sabra06G0040400' => 'sbr', 'Sabra16G0054800' => 'sbr', 'SalBow1G6798' => 'sbo', 'SalBow1G7576' => 'sbo', 'Sc01g0009160' => 'sci', 'Sc22g0000530' => 'sci', 'Sc25g0005190' => 'sci', 'Sc25g0005480' => 'sci', 'Sed0000675' => 'sed', 'Sed0007317' => 'sed', 'Sed0012862' => 'sed', 'Sed0026529' => 'sed', 'Sed0026878' => 'sed', 'Sed0027784' => 'sed', 'SEGI_34594' => 'sgi', 'SGA_v2.0_scaffold146G36191' => 'sas', 'SGA_v2.0_scaffold196G40940' => 'sas', 'SGA_v2.0_scaffold273G46447' => 'sas', 'SGA_v2.0_scaffold37G14845' => 'sas', 'SMO115G0342' => 'smo', 'Solyc03g063970.3' => 'sly', 'Solyc05g051030.3' => 'sly', 'Solyc06g060550.3' => 'sly', 'Solyc08g007510.3' => 'sly', 'Sopen01g037110' => 'spe', 'Sopen03g017630' => 'spe', 'Sopen06g020680' => 'spe', 'Sopen08g003470' => 'spe', 'Sp1g10990' => 'spa', 'Sp2g01730' => 'spa', 'Sp3g10420' => 'spa', 'Sp6g05410' => 'spa', 'TAR104G0002' => 'tar', 'TAR369G0875' => 'tar', 'TAR374G0060' => 'tar', 'TAR375G0731' => 'tar', 'TAR633G0901' => 'tar', 'THA.LOC104809920' => 'tha', 'THA.LOC104813950' => 'tha', 'THA.LOC104818359' => 'tha', 'THA.LOC104823560' => 'tha', 'Thecc.01G375900' => 'tca', 'Thecc.03G263000' => 'tca', 'Thecc.05G165500' => 'tca', 'Thhalv10009832m.g' => 'esa', 'Thhalv10021709m.g' => 'esa', 'Thhalv10023753m.g' => 'esa', 'Thhalv10029061m.g' => 'esa', 'TPR.G25629' => 'tpr', 'TPR.G28854' => 'tpr', 'TPR.G37674' => 'tpr', 'TPR.G4708' => 'tpr', 'TPR.G57' => 'tpr', 'TWI59G0626' => 'twi', 'TWI60G0234' => 'twi', 'TWI81G0009' => 'twi', 'unitig_21.g20365' => 'ugi', 'unitig_744.g24440' => 'ugi', 'vmacro09096' => 'vma', 'vmacro14038' => 'vma', 'vmacro21006' => 'vma', 'VMungo0251G1951' => 'vmu', 'VMungo0720G1570' => 'vmu', 'VMungo1215G1929' => 'vmu', 'VMungo1383G1483' => 'vmu', 'VMungo1383G3262' => 'vmu', 'Zm00001eb264160' => 'zma', 'Zm00001eb270040' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001611' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001611' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001611' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001611' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '400', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p25880' => 'bna', 'A03p68260' => 'bna', 'A08p32850' => 'bna', 'A09p15880' => 'bna', 'Aa31LG1G2240' => 'aar', 'Aa31LG2G390' => 'aar', 'Aa31LG3G6400' => 'aar', 'Aa31LG9G10390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3371' => 'aag', 'Actinidia02077' => 'ach', 'Actinidia05249' => 'ach', 'Actinidia12690' => 'ach', 'Actinidia14474' => 'ach', 'Actinidia17251' => 'ach', 'Ah.02g116170' => 'amhyb', 'Ah.04g152060' => 'amhyb', 'AL1G23720' => 'aly', 'AL2G12850' => 'aly', 'AL3G23860' => 'aly', 'AL6G46930' => 'aly', 'Aqoxy1G00301' => 'aox', 'Aqoxy2G00113' => 'aox', 'Aqoxy7G00625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WSK7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UK8SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK4DPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8Y1RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP6HK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8KRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGG9GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTM09G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YA13V2' => 'arhy', 'AT1G12340' => 'ath', 'AT1G12390' => 'ath', 'AT3G12180' => 'ath', 'AT4G12090' => 'ath', 'ATR0605G019' => 'atr', 'ATR0810G201' => 'atr', 'Atru.chr1.944' => 'acertr', 'Atru.chr5.312' => 'acertr', 'Atru.chr9.1456' => 'acertr', 'AUR62017376' => 'cqu', 'AUR62024372' => 'cqu', 'AUR62025967' => 'cqu', 'BcaB03g13190' => 'bca', 'BcaB05g23766' => 'bca', 'BcaB07g31367' => 'bca', 'BcaB07g31813' => 'bca', 'BcaB08g34279' => 'bca', 'BcaC03g16310' => 'bca', 'BcaC04g22456' => 'bca', 'BcaC05g29274' => 'bca', 'BcaC06g31916' => 'bca', 'BcaC07g41703' => 'bca', 'BolC1t05257H' => 'bol', 'BolC2t10139H' => 'bol', 'BolC5t29823H' => 'bol', 'BolC5t34224H' => 'bol', 'BolC8t49169H' => 'bol', 'BolC9t54818H' => 'bol', 'BraA01t02642Z' => 'bra', 'BraA02t07577Z' => 'bra', 'BraA05t22510Z' => 'bra', 'BraA08t35207Z' => 'bra', 'BraA09t37223Z' => 'bra', 'BraA09t41735Z' => 'bra', 'C02p41220' => 'bna', 'C08p15410' => 'bna', 'C09p19110' => 'bna', 'CAN.G1394.36' => 'can', 'CAN.G360.14' => 'can', 'CAN.G388.11' => 'can', 'CAN.G415.4' => 'can', 'CAN.G62.59' => 'can', 'CANSAT56G0461' => 'cansat', 'CANSAT80G2271' => 'cansat', 'CANSAT80G2415' => 'cansat', 'CARHR012680' => 'chi', 'CARHR048870' => 'chi', 'CARHR086760' => 'chi', 'CARHR254130' => 'chi', 'Carub.0001s1204' => 'cru', 'Carub.0002s0212' => 'cru', 'Carub.0003s1155' => 'cru', 'Carub.0006s3121' => 'cru', 'CBR_g18650' => 'cbr', 'Cc00_g05050' => 'ccan', 'Cc00_g22700' => 'ccan', 'Cc00_g30310' => 'ccan', 'Cc02_g36670' => 'ccan', 'Cc08_g13380' => 'ccan', 'CDE04G2774' => 'cde', 'CDE12G0013' => 'cde', 'Cfa012028' => 'cfa', 'Ciclev10006138m.g' => 'ccl', 'Ciclev10022158m.g' => 'ccl', 'Ciclev10022790m.g' => 'ccl', 'CiPaw.01G261700' => 'cil', 'CiPaw.02G167500' => 'cil', 'CiPaw.10G029400' => 'cil', 'CiPaw.11G146400' => 'cil', 'CiPaw.12G103700' => 'cil', 'ClCG00G001000' => 'cla', 'ClCG00G004810' => 'cla', 'ClCG01G003550' => 'cla', 'ClCG04G000520' => 'cla', 'ClCG10G003230' => 'cla', 'COL.COLO4_28735' => 'col', 'Cpa.g.sc29.77' => 'cpa', 'Cpa.g.sc85.119' => 'cpa', 'Cre01.g036550' => 'cre', 'CsaV3_3G003260' => 'csa', 'CsaV3_4G031560' => 'csa', 'CsaV3_5G003670' => 'csa', 'CSS0000566' => 'camsi', 'CSS0009605' => 'camsi', 'CSS0034022' => 'camsi', 'CSS0037389' => 'camsi', 'CSS0049455' => 'camsi', 'DCAR_000862' => 'dca', 'Dinv18103' => 'din', 'Dinv24112' => 'din', 'Dinv32380' => 'din', 'Dinv37753' => 'din', 'Dinv39068' => 'din', 'Dinv43713' => 'din', 'Duzib068G0089' => 'dzi', 'Duzib084G1257' => 'dzi', 'Duzib093G2166' => 'dzi', 'Duzib133G0532' => 'dzi', 'Duzib138G1678' => 'dzi', 'Duzib205G0876' => 'dzi', 'ECA236G0731' => 'eca', 'ECA247G3905' => 'eca', 'EL10Ac3g06982' => 'bvu', 'EL10Ac5g12634' => 'bvu', 'Eucgr.A02414' => 'egr', 'Eucgr.D01977' => 'egr', 'Eucgr.D02451' => 'egr', 'Eucgr.E00481' => 'egr', 'FAN01G0871' => 'fan', 'FAN02G0701' => 'fan', 'FAN03G0983' => 'fan', 'FAN04G1796' => 'fan', 'FAN05G2730' => 'fan', 'FAN06G0869' => 'fan', 'FAN06G4857' => 'fan', 'FAN08G1546' => 'fan', 'FAN09G3015' => 'fan', 'FAN10G0480' => 'fan', 'FAN10G2374' => 'fan', 'FAN14G0736' => 'fan', 'FAN18G4230' => 'fan', 'FvH4_5g00840' => 'fve', 'FvH4_6g22920' => 'fve', 'FvH4_7g11930' => 'fve', 'Glyma.01G212700' => 'gma', 'Glyma.02G175400' => 'gma', 'Glyma.03G141500' => 'gma', 'Glyma.05G053500' => 'gma', 'Glyma.09G269000' => 'gma', 'Glyma.10G093400' => 'gma', 'Glyma.11G029100' => 'gma', 'Glyma.17G136000' => 'gma', 'Glyma.18G220800' => 'gma', 'Glyma.19G144000' => 'gma', 'Gohir.A03G011500' => 'ghi', 'Gohir.A08G134400' => 'ghi', 'Gohir.A08G174500' => 'ghi', 'Gohir.A09G125200' => 'ghi', 'Gohir.A09G194700' => 'ghi', 'Gohir.A12G221800' => 'ghi', 'Gohir.D03G158400' => 'ghi', 'Gohir.D08G155350' => 'ghi', 'Gohir.D08G193200' => 'ghi', 'Gohir.D09G122200' => 'ghi', 'Gohir.D09G189000' => 'ghi', 'Gohir.D11G085366' => 'ghi', 'Gohir.D12G224300' => 'ghi', 'Gorai.003G167000' => 'gra', 'Gorai.004G161400' => 'gra', 'Gorai.004G203400' => 'gra', 'Gorai.006G140000' => 'gra', 'Gorai.006G211700' => 'gra', 'Gorai.007G091200' => 'gra', 'Gorai.008G240400' => 'gra', 'GSVIVG01019941001' => 'vvi', 'GSVIVG01027615001' => 'vvi', 'GSVIVG01033351001' => 'vvi', 'HanXRQChr02g0046231' => 'han', 'HanXRQChr03g0093881' => 'han', 'HanXRQChr05g0132751' => 'han', 'HanXRQChr05g0132761' => 'han', 'HanXRQChr06g0176351' => 'han', 'HanXRQChr07g0188611' => 'han', 'HanXRQChr10g0291881' => 'han', 'HanXRQChr13g0417341' => 'han', 'HanXRQChr13g0425211' => 'han', 'Haze_16818' => 'cav', 'Haze_19926' => 'cav', 'Hma1.2p1_0367F.1_g137090' => 'hma', 'Hma1.2p1_0856F.1_g229070' => 'hma', 'HPP92_014949' => 'vpl', 'HPP92_014980' => 'vpl', 'HPP92_017823' => 'vpl', 'HPP92_017834' => 'vpl', 'HPP92_027174' => 'vpl', 'Hund11557' => 'sun', 'Hund14663' => 'sun', 'Hund24756' => 'sun', 'Lalb_Chr05g0214651' => 'lal', 'Lalb_Chr05g0225311' => 'lal', 'Lalb_Chr16g0379811' => 'lal', 'Lalb_Chr16g0389581' => 'lal', 'Lalb_Chr25g0287561' => 'lal', 'Lj1g0003796' => 'lja', 'Lj2g0016923' => 'lja', 'Lj4g0006806' => 'lja', 'Lj5g0003236' => 'lja', 'Lj9A570T40' => 'lonja', 'Lju124A33T33' => 'lonja', 'Lsat_1_v5_gn_3_131981' => 'lsa', 'Lsat_1_v5_gn_6_88901' => 'lsa', 'Lsat_1_v5_gn_6_9661' => 'lsa', 'Lsat_1_v5_gn_8_79420' => 'lsa', 'Lsat_1_v5_gn_9_28441' => 'lsa', 'Manes.01G072000' => 'mes', 'Manes.01G265700' => 'mes', 'Manes.02G032648' => 'mes', 'Manes.09G030700' => 'mes', 'Mapoly0124s0019' => 'mpo', 'MBI01_g36429_MAGBIO' => 'mbi', 'MBI04_g14255_MAGBIO' => 'mbi', 'MBI04_g35278_MAGBIO' => 'mbi', 'MCO13G591' => 'mco', 'MD02G1203900' => 'mdo', 'MD04G1077700' => 'mdo', 'MD06G1074200' => 'mdo', 'MD07G1122200' => 'mdo', 'MD12G1063300' => 'mdo', 'MD14G1064100' => 'mdo', 'Medtr0311s0030' => 'mtr', 'Medtr4g102010' => 'mtr', 'Medtr5g011690' => 'mtr', 'Medtr7g074930' => 'mtr', 'Medtr7g092530' => 'mtr', 'MELO3C009082.2' => 'cme', 'MELO3C013992.2' => 'cme', 'Migut.A00843' => 'egut', 'Migut.B01637' => 'egut', 'Migut.E00982' => 'egut', 'Migut.K00062' => 'egut', 'MSTRG.10831' => 'ama', 'MSTRG.12051' => 'ama', 'MSTRG.1932' => 'ama', 'MSTRG.20750' => 'ama', 'MSTRG.25555' => 'ama', 'Nitab4.5_0000016g0010' => 'nta', 'Nitab4.5_0000457g0310' => 'nta', 'Nitab4.5_0000633g0040' => 'nta', 'Nitab4.5_0001265g0020' => 'nta', 'Nitab4.5_0001329g0100' => 'nta', 'Nitab4.5_0001816g0210' => 'nta', 'Nitab4.5_0003912g0040' => 'nta', 'Nitab4.5_0005372g0010' => 'nta', 'Nitab4.5_0007130g0010' => 'nta', 'Nitab4.5_0008022g0040' => 'nta', 'Nn1g01229' => 'nnu', 'Nn2g15496' => 'nnu', 'Nn2g16004' => 'nnu', 'Nn8g40939' => 'nnu', 'Oeu026880.1' => 'oeu', 'Oeu026881.1' => 'oeu', 'Oeu033758.1' => 'oeu', 'Oeu040061.1' => 'oeu', 'Oeu056796.1' => 'oeu', 'Os06g0136500' => 'osa', 'Os12g0506400' => 'osa', 'Peaxi162Scf00051g00212' => 'pax', 'Peaxi162Scf00102g01229' => 'pax', 'Peaxi162Scf00285g00224' => 'pax', 'Peaxi162Scf00959g00317' => 'pax', 'PGR004G1477' => 'pgr', 'PGR031G0493' => 'pgr', 'PGR031G2333' => 'pgr', 'PGSC0003DMG400007015' => 'stu', 'PGSC0003DMG400012484' => 'stu', 'PGSC0003DMG400017581' => 'stu', 'PGSC0003DMG401012773' => 'stu', 'PGSC0003DMG402012773' => 'stu', 'Phvul.001G138400' => 'pvu', 'Phvul.002G151200' => 'pvu', 'Phvul.003G215700' => 'pvu', 'Phvul.007G256900' => 'pvu', 'Phvul.008G076200' => 'pvu', 'Potri.001G116100' => 'ptr', 'Potri.002G148500' => 'ptr', 'Potri.003G116400' => 'ptr', 'Potri.006G057300' => 'ptr', 'Potri.016G051000' => 'ptr', 'Pp3c11_17020' => 'ppa', 'Pp3c7_11500' => 'ppa', 'PRCOL_00001064' => 'pco', 'Prupe.2G146000' => 'ppe', 'Prupe.5G080900' => 'ppe', 'Prupe.7G070300' => 'ppe', 'Psat2g179920' => 'psa', 'Psat3g070360' => 'psa', 'Psat3g115760' => 'psa', 'Psat4g069120' => 'psa', 'Psat6g072480' => 'psa', 'PSO339G2796' => 'pso', 'PSO384G4669' => 'pso', 'PSO478G4034' => 'pso', 'PSO782G2319' => 'pso', 'QL07p022315' => 'qlo', 'QL12p015319' => 'qlo', 'QL93p1910_0004' => 'qlo', 'RcHm_v2.0_Chr1g0350611' => 'rch', 'RcHm_v2.0_Chr1g0366241' => 'rch', 'RcHm_v2.0_Chr1g0366251' => 'rch', 'RcHm_v2.0_Chr3g0480731' => 'rch', 'RcHm_v2.0_Chr3g0490911' => 'rch', 'RcHm_v2.0_Chr3g0490921' => 'rch', 'RcHm_v2.0_Chr3g0492201' => 'rch', 'RcHm_v2.0_Chr3g0492211' => 'rch', 'RcHm_v2.0_Chr7g0201081' => 'rch', 'Rhsim01G0147500' => 'rsi', 'Rhsim04G0099200' => 'rsi', 'Rhsim07G0101000' => 'rsi', 'Sabra01G0089200' => 'sbr', 'Sabra03G0080900' => 'sbr', 'Sabra06G0040400' => 'sbr', 'Sabra16G0054800' => 'sbr', 'SalBow1G6798' => 'sbo', 'SalBow1G7576' => 'sbo', 'Sc01g0009160' => 'sci', 'Sc22g0000530' => 'sci', 'Sc25g0005190' => 'sci', 'Sc25g0005480' => 'sci', 'Sed0000675' => 'sed', 'Sed0007317' => 'sed', 'Sed0012862' => 'sed', 'Sed0026529' => 'sed', 'Sed0026878' => 'sed', 'Sed0027784' => 'sed', 'SEGI_34594' => 'sgi', 'SGA_v2.0_scaffold146G36191' => 'sas', 'SGA_v2.0_scaffold196G40940' => 'sas', 'SGA_v2.0_scaffold273G46447' => 'sas', 'SGA_v2.0_scaffold37G14845' => 'sas', 'SMO115G0342' => 'smo', 'Solyc03g063970.3' => 'sly', 'Solyc05g051030.3' => 'sly', 'Solyc06g060550.3' => 'sly', 'Solyc08g007510.3' => 'sly', 'Sopen01g037110' => 'spe', 'Sopen03g017630' => 'spe', 'Sopen06g020680' => 'spe', 'Sopen08g003470' => 'spe', 'Sp1g10990' => 'spa', 'Sp2g01730' => 'spa', 'Sp3g10420' => 'spa', 'Sp6g05410' => 'spa', 'TAR104G0002' => 'tar', 'TAR369G0875' => 'tar', 'TAR374G0060' => 'tar', 'TAR375G0731' => 'tar', 'TAR633G0901' => 'tar', 'THA.LOC104809920' => 'tha', 'THA.LOC104813950' => 'tha', 'THA.LOC104818359' => 'tha', 'THA.LOC104823560' => 'tha', 'Thecc.01G375900' => 'tca', 'Thecc.03G263000' => 'tca', 'Thecc.05G165500' => 'tca', 'Thhalv10009832m.g' => 'esa', 'Thhalv10021709m.g' => 'esa', 'Thhalv10023753m.g' => 'esa', 'Thhalv10029061m.g' => 'esa', 'TPR.G25629' => 'tpr', 'TPR.G28854' => 'tpr', 'TPR.G37674' => 'tpr', 'TPR.G4708' => 'tpr', 'TPR.G57' => 'tpr', 'TWI59G0626' => 'twi', 'TWI60G0234' => 'twi', 'TWI81G0009' => 'twi', 'unitig_21.g20365' => 'ugi', 'unitig_744.g24440' => 'ugi', 'vmacro09096' => 'vma', 'vmacro14038' => 'vma', 'vmacro21006' => 'vma', 'VMungo0251G1951' => 'vmu', 'VMungo0720G1570' => 'vmu', 'VMungo1215G1929' => 'vmu', 'VMungo1383G1483' => 'vmu', 'VMungo1383G3262' => 'vmu', 'Zm00001eb264160' => 'zma', 'Zm00001eb270040' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001611', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001611' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '400', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001611' ) ), 'genes' => array( 'A02p25880' => 'bna', 'A03p68260' => 'bna', 'A08p32850' => 'bna', 'A09p15880' => 'bna', 'Aa31LG1G2240' => 'aar', 'Aa31LG2G390' => 'aar', 'Aa31LG3G6400' => 'aar', 'Aa31LG9G10390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3371' => 'aag', 'Actinidia02077' => 'ach', 'Actinidia05249' => 'ach', 'Actinidia12690' => 'ach', 'Actinidia14474' => 'ach', 'Actinidia17251' => 'ach', 'Ah.02g116170' => 'amhyb', 'Ah.04g152060' => 'amhyb', 'AL1G23720' => 'aly', 'AL2G12850' => 'aly', 'AL3G23860' => 'aly', 'AL6G46930' => 'aly', 'Aqoxy1G00301' => 'aox', 'Aqoxy2G00113' => 'aox', 'Aqoxy7G00625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WSK7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UK8SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK4DPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8Y1RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP6HK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8KRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGG9GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTM09G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YA13V2' => 'arhy', 'AT1G12340' => 'ath', 'AT1G12390' => 'ath', 'AT3G12180' => 'ath', 'AT4G12090' => 'ath', 'ATR0605G019' => 'atr', 'ATR0810G201' => 'atr', 'Atru.chr1.944' => 'acertr', 'Atru.chr5.312' => 'acertr', 'Atru.chr9.1456' => 'acertr', 'AUR62017376' => 'cqu', 'AUR62024372' => 'cqu', 'AUR62025967' => 'cqu', 'BcaB03g13190' => 'bca', 'BcaB05g23766' => 'bca', 'BcaB07g31367' => 'bca', 'BcaB07g31813' => 'bca', 'BcaB08g34279' => 'bca', 'BcaC03g16310' => 'bca', 'BcaC04g22456' => 'bca', 'BcaC05g29274' => 'bca', 'BcaC06g31916' => 'bca', 'BcaC07g41703' => 'bca', 'BolC1t05257H' => 'bol', 'BolC2t10139H' => 'bol', 'BolC5t29823H' => 'bol', 'BolC5t34224H' => 'bol', 'BolC8t49169H' => 'bol', 'BolC9t54818H' => 'bol', 'BraA01t02642Z' => 'bra', 'BraA02t07577Z' => 'bra', 'BraA05t22510Z' => 'bra', 'BraA08t35207Z' => 'bra', 'BraA09t37223Z' => 'bra', 'BraA09t41735Z' => 'bra', 'C02p41220' => 'bna', 'C08p15410' => 'bna', 'C09p19110' => 'bna', 'CAN.G1394.36' => 'can', 'CAN.G360.14' => 'can', 'CAN.G388.11' => 'can', 'CAN.G415.4' => 'can', 'CAN.G62.59' => 'can', 'CANSAT56G0461' => 'cansat', 'CANSAT80G2271' => 'cansat', 'CANSAT80G2415' => 'cansat', 'CARHR012680' => 'chi', 'CARHR048870' => 'chi', 'CARHR086760' => 'chi', 'CARHR254130' => 'chi', 'Carub.0001s1204' => 'cru', 'Carub.0002s0212' => 'cru', 'Carub.0003s1155' => 'cru', 'Carub.0006s3121' => 'cru', 'CBR_g18650' => 'cbr', 'Cc00_g05050' => 'ccan', 'Cc00_g22700' => 'ccan', 'Cc00_g30310' => 'ccan', 'Cc02_g36670' => 'ccan', 'Cc08_g13380' => 'ccan', 'CDE04G2774' => 'cde', 'CDE12G0013' => 'cde', 'Cfa012028' => 'cfa', 'Ciclev10006138m.g' => 'ccl', 'Ciclev10022158m.g' => 'ccl', 'Ciclev10022790m.g' => 'ccl', 'CiPaw.01G261700' => 'cil', 'CiPaw.02G167500' => 'cil', 'CiPaw.10G029400' => 'cil', 'CiPaw.11G146400' => 'cil', 'CiPaw.12G103700' => 'cil', 'ClCG00G001000' => 'cla', 'ClCG00G004810' => 'cla', 'ClCG01G003550' => 'cla', 'ClCG04G000520' => 'cla', 'ClCG10G003230' => 'cla', 'COL.COLO4_28735' => 'col', 'Cpa.g.sc29.77' => 'cpa', 'Cpa.g.sc85.119' => 'cpa', 'Cre01.g036550' => 'cre', 'CsaV3_3G003260' => 'csa', 'CsaV3_4G031560' => 'csa', 'CsaV3_5G003670' => 'csa', 'CSS0000566' => 'camsi', 'CSS0009605' => 'camsi', 'CSS0034022' => 'camsi', 'CSS0037389' => 'camsi', 'CSS0049455' => 'camsi', 'DCAR_000862' => 'dca', 'Dinv18103' => 'din', 'Dinv24112' => 'din', 'Dinv32380' => 'din', 'Dinv37753' => 'din', 'Dinv39068' => 'din', 'Dinv43713' => 'din', 'Duzib068G0089' => 'dzi', 'Duzib084G1257' => 'dzi', 'Duzib093G2166' => 'dzi', 'Duzib133G0532' => 'dzi', 'Duzib138G1678' => 'dzi', 'Duzib205G0876' => 'dzi', 'ECA236G0731' => 'eca', 'ECA247G3905' => 'eca', 'EL10Ac3g06982' => 'bvu', 'EL10Ac5g12634' => 'bvu', 'Eucgr.A02414' => 'egr', 'Eucgr.D01977' => 'egr', 'Eucgr.D02451' => 'egr', 'Eucgr.E00481' => 'egr', 'FAN01G0871' => 'fan', 'FAN02G0701' => 'fan', 'FAN03G0983' => 'fan', 'FAN04G1796' => 'fan', 'FAN05G2730' => 'fan', 'FAN06G0869' => 'fan', 'FAN06G4857' => 'fan', 'FAN08G1546' => 'fan', 'FAN09G3015' => 'fan', 'FAN10G0480' => 'fan', 'FAN10G2374' => 'fan', 'FAN14G0736' => 'fan', 'FAN18G4230' => 'fan', 'FvH4_5g00840' => 'fve', 'FvH4_6g22920' => 'fve', 'FvH4_7g11930' => 'fve', 'Glyma.01G212700' => 'gma', 'Glyma.02G175400' => 'gma', 'Glyma.03G141500' => 'gma', 'Glyma.05G053500' => 'gma', 'Glyma.09G269000' => 'gma', 'Glyma.10G093400' => 'gma', 'Glyma.11G029100' => 'gma', 'Glyma.17G136000' => 'gma', 'Glyma.18G220800' => 'gma', 'Glyma.19G144000' => 'gma', 'Gohir.A03G011500' => 'ghi', 'Gohir.A08G134400' => 'ghi', 'Gohir.A08G174500' => 'ghi', 'Gohir.A09G125200' => 'ghi', 'Gohir.A09G194700' => 'ghi', 'Gohir.A12G221800' => 'ghi', 'Gohir.D03G158400' => 'ghi', 'Gohir.D08G155350' => 'ghi', 'Gohir.D08G193200' => 'ghi', 'Gohir.D09G122200' => 'ghi', 'Gohir.D09G189000' => 'ghi', 'Gohir.D11G085366' => 'ghi', 'Gohir.D12G224300' => 'ghi', 'Gorai.003G167000' => 'gra', 'Gorai.004G161400' => 'gra', 'Gorai.004G203400' => 'gra', 'Gorai.006G140000' => 'gra', 'Gorai.006G211700' => 'gra', 'Gorai.007G091200' => 'gra', 'Gorai.008G240400' => 'gra', 'GSVIVG01019941001' => 'vvi', 'GSVIVG01027615001' => 'vvi', 'GSVIVG01033351001' => 'vvi', 'HanXRQChr02g0046231' => 'han', 'HanXRQChr03g0093881' => 'han', 'HanXRQChr05g0132751' => 'han', 'HanXRQChr05g0132761' => 'han', 'HanXRQChr06g0176351' => 'han', 'HanXRQChr07g0188611' => 'han', 'HanXRQChr10g0291881' => 'han', 'HanXRQChr13g0417341' => 'han', 'HanXRQChr13g0425211' => 'han', 'Haze_16818' => 'cav', 'Haze_19926' => 'cav', 'Hma1.2p1_0367F.1_g137090' => 'hma', 'Hma1.2p1_0856F.1_g229070' => 'hma', 'HPP92_014949' => 'vpl', 'HPP92_014980' => 'vpl', 'HPP92_017823' => 'vpl', 'HPP92_017834' => 'vpl', 'HPP92_027174' => 'vpl', 'Hund11557' => 'sun', 'Hund14663' => 'sun', 'Hund24756' => 'sun', 'Lalb_Chr05g0214651' => 'lal', 'Lalb_Chr05g0225311' => 'lal', 'Lalb_Chr16g0379811' => 'lal', 'Lalb_Chr16g0389581' => 'lal', 'Lalb_Chr25g0287561' => 'lal', 'Lj1g0003796' => 'lja', 'Lj2g0016923' => 'lja', 'Lj4g0006806' => 'lja', 'Lj5g0003236' => 'lja', 'Lj9A570T40' => 'lonja', 'Lju124A33T33' => 'lonja', 'Lsat_1_v5_gn_3_131981' => 'lsa', 'Lsat_1_v5_gn_6_88901' => 'lsa', 'Lsat_1_v5_gn_6_9661' => 'lsa', 'Lsat_1_v5_gn_8_79420' => 'lsa', 'Lsat_1_v5_gn_9_28441' => 'lsa', 'Manes.01G072000' => 'mes', 'Manes.01G265700' => 'mes', 'Manes.02G032648' => 'mes', 'Manes.09G030700' => 'mes', 'Mapoly0124s0019' => 'mpo', 'MBI01_g36429_MAGBIO' => 'mbi', 'MBI04_g14255_MAGBIO' => 'mbi', 'MBI04_g35278_MAGBIO' => 'mbi', 'MCO13G591' => 'mco', 'MD02G1203900' => 'mdo', 'MD04G1077700' => 'mdo', 'MD06G1074200' => 'mdo', 'MD07G1122200' => 'mdo', 'MD12G1063300' => 'mdo', 'MD14G1064100' => 'mdo', 'Medtr0311s0030' => 'mtr', 'Medtr4g102010' => 'mtr', 'Medtr5g011690' => 'mtr', 'Medtr7g074930' => 'mtr', 'Medtr7g092530' => 'mtr', 'MELO3C009082.2' => 'cme', 'MELO3C013992.2' => 'cme', 'Migut.A00843' => 'egut', 'Migut.B01637' => 'egut', 'Migut.E00982' => 'egut', 'Migut.K00062' => 'egut', 'MSTRG.10831' => 'ama', 'MSTRG.12051' => 'ama', 'MSTRG.1932' => 'ama', 'MSTRG.20750' => 'ama', 'MSTRG.25555' => 'ama', 'Nitab4.5_0000016g0010' => 'nta', 'Nitab4.5_0000457g0310' => 'nta', 'Nitab4.5_0000633g0040' => 'nta', 'Nitab4.5_0001265g0020' => 'nta', 'Nitab4.5_0001329g0100' => 'nta', 'Nitab4.5_0001816g0210' => 'nta', 'Nitab4.5_0003912g0040' => 'nta', 'Nitab4.5_0005372g0010' => 'nta', 'Nitab4.5_0007130g0010' => 'nta', 'Nitab4.5_0008022g0040' => 'nta', 'Nn1g01229' => 'nnu', 'Nn2g15496' => 'nnu', 'Nn2g16004' => 'nnu', 'Nn8g40939' => 'nnu', 'Oeu026880.1' => 'oeu', 'Oeu026881.1' => 'oeu', 'Oeu033758.1' => 'oeu', 'Oeu040061.1' => 'oeu', 'Oeu056796.1' => 'oeu', 'Os06g0136500' => 'osa', 'Os12g0506400' => 'osa', 'Peaxi162Scf00051g00212' => 'pax', 'Peaxi162Scf00102g01229' => 'pax', 'Peaxi162Scf00285g00224' => 'pax', 'Peaxi162Scf00959g00317' => 'pax', 'PGR004G1477' => 'pgr', 'PGR031G0493' => 'pgr', 'PGR031G2333' => 'pgr', 'PGSC0003DMG400007015' => 'stu', 'PGSC0003DMG400012484' => 'stu', 'PGSC0003DMG400017581' => 'stu', 'PGSC0003DMG401012773' => 'stu', 'PGSC0003DMG402012773' => 'stu', 'Phvul.001G138400' => 'pvu', 'Phvul.002G151200' => 'pvu', 'Phvul.003G215700' => 'pvu', 'Phvul.007G256900' => 'pvu', 'Phvul.008G076200' => 'pvu', 'Potri.001G116100' => 'ptr', 'Potri.002G148500' => 'ptr', 'Potri.003G116400' => 'ptr', 'Potri.006G057300' => 'ptr', 'Potri.016G051000' => 'ptr', 'Pp3c11_17020' => 'ppa', 'Pp3c7_11500' => 'ppa', 'PRCOL_00001064' => 'pco', 'Prupe.2G146000' => 'ppe', 'Prupe.5G080900' => 'ppe', 'Prupe.7G070300' => 'ppe', 'Psat2g179920' => 'psa', 'Psat3g070360' => 'psa', 'Psat3g115760' => 'psa', 'Psat4g069120' => 'psa', 'Psat6g072480' => 'psa', 'PSO339G2796' => 'pso', 'PSO384G4669' => 'pso', 'PSO478G4034' => 'pso', 'PSO782G2319' => 'pso', 'QL07p022315' => 'qlo', 'QL12p015319' => 'qlo', 'QL93p1910_0004' => 'qlo', 'RcHm_v2.0_Chr1g0350611' => 'rch', 'RcHm_v2.0_Chr1g0366241' => 'rch', 'RcHm_v2.0_Chr1g0366251' => 'rch', 'RcHm_v2.0_Chr3g0480731' => 'rch', 'RcHm_v2.0_Chr3g0490911' => 'rch', 'RcHm_v2.0_Chr3g0490921' => 'rch', 'RcHm_v2.0_Chr3g0492201' => 'rch', 'RcHm_v2.0_Chr3g0492211' => 'rch', 'RcHm_v2.0_Chr7g0201081' => 'rch', 'Rhsim01G0147500' => 'rsi', 'Rhsim04G0099200' => 'rsi', 'Rhsim07G0101000' => 'rsi', 'Sabra01G0089200' => 'sbr', 'Sabra03G0080900' => 'sbr', 'Sabra06G0040400' => 'sbr', 'Sabra16G0054800' => 'sbr', 'SalBow1G6798' => 'sbo', 'SalBow1G7576' => 'sbo', 'Sc01g0009160' => 'sci', 'Sc22g0000530' => 'sci', 'Sc25g0005190' => 'sci', 'Sc25g0005480' => 'sci', 'Sed0000675' => 'sed', 'Sed0007317' => 'sed', 'Sed0012862' => 'sed', 'Sed0026529' => 'sed', 'Sed0026878' => 'sed', 'Sed0027784' => 'sed', 'SEGI_34594' => 'sgi', 'SGA_v2.0_scaffold146G36191' => 'sas', 'SGA_v2.0_scaffold196G40940' => 'sas', 'SGA_v2.0_scaffold273G46447' => 'sas', 'SGA_v2.0_scaffold37G14845' => 'sas', 'SMO115G0342' => 'smo', 'Solyc03g063970.3' => 'sly', 'Solyc05g051030.3' => 'sly', 'Solyc06g060550.3' => 'sly', 'Solyc08g007510.3' => 'sly', 'Sopen01g037110' => 'spe', 'Sopen03g017630' => 'spe', 'Sopen06g020680' => 'spe', 'Sopen08g003470' => 'spe', 'Sp1g10990' => 'spa', 'Sp2g01730' => 'spa', 'Sp3g10420' => 'spa', 'Sp6g05410' => 'spa', 'TAR104G0002' => 'tar', 'TAR369G0875' => 'tar', 'TAR374G0060' => 'tar', 'TAR375G0731' => 'tar', 'TAR633G0901' => 'tar', 'THA.LOC104809920' => 'tha', 'THA.LOC104813950' => 'tha', 'THA.LOC104818359' => 'tha', 'THA.LOC104823560' => 'tha', 'Thecc.01G375900' => 'tca', 'Thecc.03G263000' => 'tca', 'Thecc.05G165500' => 'tca', 'Thhalv10009832m.g' => 'esa', 'Thhalv10021709m.g' => 'esa', 'Thhalv10023753m.g' => 'esa', 'Thhalv10029061m.g' => 'esa', 'TPR.G25629' => 'tpr', 'TPR.G28854' => 'tpr', 'TPR.G37674' => 'tpr', 'TPR.G4708' => 'tpr', 'TPR.G57' => 'tpr', 'TWI59G0626' => 'twi', 'TWI60G0234' => 'twi', 'TWI81G0009' => 'twi', 'unitig_21.g20365' => 'ugi', 'unitig_744.g24440' => 'ugi', 'vmacro09096' => 'vma', 'vmacro14038' => 'vma', 'vmacro21006' => 'vma', 'VMungo0251G1951' => 'vmu', 'VMungo0720G1570' => 'vmu', 'VMungo1215G1929' => 'vmu', 'VMungo1383G1483' => 'vmu', 'VMungo1383G3262' => 'vmu', 'Zm00001eb264160' => 'zma', 'Zm00001eb270040' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001611' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001611' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001611' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001611' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151