Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p25880 Brassica napus
A03p68260 Brassica napus
A08p32850 Brassica napus
A09p15880 Brassica napus
Aa31LG1G2240 Aethionema arabicum
Aa31LG2G390 Aethionema arabicum
Aa31LG3G6400 Aethionema arabicum
Aa31LG9G10390 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3371 Anthoceros agrestis
Actinidia02077 Actinidia chinensis
Actinidia05249 Actinidia chinensis
Actinidia12690 Actinidia chinensis
Actinidia14474 Actinidia chinensis
Actinidia17251 Actinidia chinensis
Ah.02g116170 Amaranthus hybridus
Ah.04g152060 Amaranthus hybridus
AL1G23720 Arabidopsis lyrata
AL2G12850 Arabidopsis lyrata
AL3G23860 Arabidopsis lyrata
AL6G46930 Arabidopsis lyrata
Aqoxy1G00301 Aquilegia oxysepala
Aqoxy2G00113 Aquilegia oxysepala
Aqoxy7G00625 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3WSK7Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8UK8SV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AK4DPW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E8Y1RF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EP6HK9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KR8KRT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LGG9GW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NTM09G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YA13V2 Arachis hypogaea
AT1G12340 Arabidopsis thaliana
AT1G12390 Arabidopsis thaliana
AT3G12180 Arabidopsis thaliana
AT4G12090 Arabidopsis thaliana
ATR0605G019 Amborella trichopoda
ATR0810G201 Amborella trichopoda
Atru.chr1.944 Acer truncatum
Atru.chr5.312 Acer truncatum
Atru.chr9.1456 Acer truncatum
AUR62017376 Chenopodium quinoa
AUR62024372 Chenopodium quinoa
AUR62025967 Chenopodium quinoa
BcaB03g13190 Brassica carinata
BcaB05g23766 Brassica carinata
BcaB07g31367 Brassica carinata
BcaB07g31813 Brassica carinata
BcaB08g34279 Brassica carinata
BcaC03g16310 Brassica carinata
BcaC04g22456 Brassica carinata
BcaC05g29274 Brassica carinata
BcaC06g31916 Brassica carinata
BcaC07g41703 Brassica carinata
BolC1t05257H Brassica oleracea
BolC2t10139H Brassica oleracea
BolC5t29823H Brassica oleracea
BolC5t34224H Brassica oleracea
BolC8t49169H Brassica oleracea
BolC9t54818H Brassica oleracea
BraA01t02642Z Brassica rapa
BraA02t07577Z Brassica rapa
BraA05t22510Z Brassica rapa
BraA08t35207Z Brassica rapa
BraA09t37223Z Brassica rapa
BraA09t41735Z Brassica rapa
C02p41220 Brassica napus
C08p15410 Brassica napus
C09p19110 Brassica napus
CAN.G1394.36 Capsicum annuum
CAN.G360.14 Capsicum annuum
CAN.G388.11 Capsicum annuum
CAN.G415.4 Capsicum annuum
CAN.G62.59 Capsicum annuum
CANSAT56G0461 Cannabis sativa
CANSAT80G2271 Cannabis sativa
CANSAT80G2415 Cannabis sativa
CARHR012680 Cardamine hirsuta
CARHR048870 Cardamine hirsuta
CARHR086760 Cardamine hirsuta
CARHR254130 Cardamine hirsuta
Carub.0001s1204 Capsella rubella
Carub.0002s0212 Capsella rubella
Carub.0003s1155 Capsella rubella
Carub.0006s3121 Capsella rubella
CBR_g18650 Chara braunii
Cc00_g05050 Coffea canephora
Cc00_g22700 Coffea canephora
Cc00_g30310 Coffea canephora
Cc02_g36670 Coffea canephora
Cc08_g13380 Coffea canephora
CDE04G2774 Ceratophyllum demersum
CDE12G0013 Ceratophyllum demersum
Cfa012028 Carpinus fangiana
Ciclev10006138m.g Citrus clementina
Ciclev10022158m.g Citrus clementina
Ciclev10022790m.g Citrus clementina
CiPaw.01G261700 Carya illinoinensis
CiPaw.02G167500 Carya illinoinensis
CiPaw.10G029400 Carya illinoinensis
CiPaw.11G146400 Carya illinoinensis
CiPaw.12G103700 Carya illinoinensis
ClCG00G001000 Citrullus lanatus
ClCG00G004810 Citrullus lanatus
ClCG01G003550 Citrullus lanatus
ClCG04G000520 Citrullus lanatus
ClCG10G003230 Citrullus lanatus
COL.COLO4_28735 Corchorus olitorius
Cpa.g.sc29.77 Carica papaya
Cpa.g.sc85.119 Carica papaya
Cre01.g036550 Chlamydomonas reinhardtii
CsaV3_3G003260 Cucumis sativus L.
CsaV3_4G031560 Cucumis sativus L.
CsaV3_5G003670 Cucumis sativus L.
CSS0000566 Camellia sinensis var. sinensis
CSS0009605 Camellia sinensis var. sinensis
CSS0034022 Camellia sinensis var. sinensis
CSS0037389 Camellia sinensis var. sinensis
CSS0049455 Camellia sinensis var. sinensis
DCAR_000862 Daucus carota
Dinv18103 Davidia involucrata
Dinv24112 Davidia involucrata
Dinv32380 Davidia involucrata
Dinv37753 Davidia involucrata
Dinv39068 Davidia involucrata
Dinv43713 Davidia involucrata
Duzib068G0089 Durio zibethinus
Duzib084G1257 Durio zibethinus
Duzib093G2166 Durio zibethinus
Duzib133G0532 Durio zibethinus
Duzib138G1678 Durio zibethinus
Duzib205G0876 Durio zibethinus
ECA236G0731 Erigeron canadensis
ECA247G3905 Erigeron canadensis
EL10Ac3g06982 Beta vulgaris
EL10Ac5g12634 Beta vulgaris
Eucgr.A02414 Eucalyptus grandis
Eucgr.D01977 Eucalyptus grandis
Eucgr.D02451 Eucalyptus grandis
Eucgr.E00481 Eucalyptus grandis
FAN01G0871 Fragaria x ananassa
FAN02G0701 Fragaria x ananassa
FAN03G0983 Fragaria x ananassa
FAN04G1796 Fragaria x ananassa
FAN05G2730 Fragaria x ananassa
FAN06G0869 Fragaria x ananassa
FAN06G4857 Fragaria x ananassa
FAN08G1546 Fragaria x ananassa
FAN09G3015 Fragaria x ananassa
FAN10G0480 Fragaria x ananassa
FAN10G2374 Fragaria x ananassa
FAN14G0736 Fragaria x ananassa
FAN18G4230 Fragaria x ananassa
FvH4_5g00840 Fragaria vesca
FvH4_6g22920 Fragaria vesca
FvH4_7g11930 Fragaria vesca
Glyma.01G212700 Glycine max
Glyma.02G175400 Glycine max
Glyma.03G141500 Glycine max
Glyma.05G053500 Glycine max
Glyma.09G269000 Glycine max
Glyma.10G093400 Glycine max
Glyma.11G029100 Glycine max
Glyma.17G136000 Glycine max
Glyma.18G220800 Glycine max
Glyma.19G144000 Glycine max
Gohir.A03G011500 Gossypium hirsutum
Gohir.A08G134400 Gossypium hirsutum
Gohir.A08G174500 Gossypium hirsutum
Gohir.A09G125200 Gossypium hirsutum
Gohir.A09G194700 Gossypium hirsutum
Gohir.A12G221800 Gossypium hirsutum
Gohir.D03G158400 Gossypium hirsutum
Gohir.D08G155350 Gossypium hirsutum
Gohir.D08G193200 Gossypium hirsutum
Gohir.D09G122200 Gossypium hirsutum
Gohir.D09G189000 Gossypium hirsutum
Gohir.D11G085366 Gossypium hirsutum
Gohir.D12G224300 Gossypium hirsutum
Gorai.003G167000 Gossypium raimondii
Gorai.004G161400 Gossypium raimondii
Gorai.004G203400 Gossypium raimondii
Gorai.006G140000 Gossypium raimondii
Gorai.006G211700 Gossypium raimondii
Gorai.007G091200 Gossypium raimondii
Gorai.008G240400 Gossypium raimondii
GSVIVG01019941001 Vitis vinifera
GSVIVG01027615001 Vitis vinifera
GSVIVG01033351001 Vitis vinifera
HanXRQChr02g0046231 Helianthus annuus
HanXRQChr03g0093881 Helianthus annuus
HanXRQChr05g0132751 Helianthus annuus
HanXRQChr05g0132761 Helianthus annuus
HanXRQChr06g0176351 Helianthus annuus
HanXRQChr07g0188611 Helianthus annuus
HanXRQChr10g0291881 Helianthus annuus
HanXRQChr13g0417341 Helianthus annuus
HanXRQChr13g0425211 Helianthus annuus
Haze_16818 Corylus avellana
Haze_19926 Corylus avellana
Hma1.2p1_0367F.1_g137090 Hydrangea macrophylla
Hma1.2p1_0856F.1_g229070 Hydrangea macrophylla
HPP92_014949 Vanilla planifolia
HPP92_014980 Vanilla planifolia
HPP92_017823 Vanilla planifolia
HPP92_017834 Vanilla planifolia
HPP92_027174 Vanilla planifolia
Hund11557 Selenicereus undatus
Hund14663 Selenicereus undatus
Hund24756 Selenicereus undatus
Lalb_Chr05g0214651 Lupinus albus
Lalb_Chr05g0225311 Lupinus albus
Lalb_Chr16g0379811 Lupinus albus
Lalb_Chr16g0389581 Lupinus albus
Lalb_Chr25g0287561 Lupinus albus
Lj1g0003796 Lotus japonicus
Lj2g0016923 Lotus japonicus
Lj4g0006806 Lotus japonicus
Lj5g0003236 Lotus japonicus
Lj9A570T40 Lonicera japonica
Lju124A33T33 Lonicera japonica
Lsat_1_v5_gn_3_131981 Lactuca sativa
Lsat_1_v5_gn_6_88901 Lactuca sativa
Lsat_1_v5_gn_6_9661 Lactuca sativa
Lsat_1_v5_gn_8_79420 Lactuca sativa
Lsat_1_v5_gn_9_28441 Lactuca sativa
Manes.01G072000 Manihot esculenta
Manes.01G265700 Manihot esculenta
Manes.02G032648 Manihot esculenta
Manes.09G030700 Manihot esculenta
Mapoly0124s0019 Marchantia polymorpha
MBI01_g36429_MAGBIO Magnolia biondii
MBI04_g14255_MAGBIO Magnolia biondii
MBI04_g35278_MAGBIO Magnolia biondii
MCO13G591 Micromonas commoda
MD02G1203900 Malus domestica
MD04G1077700 Malus domestica
MD06G1074200 Malus domestica
MD07G1122200 Malus domestica
MD12G1063300 Malus domestica
MD14G1064100 Malus domestica
Medtr0311s0030 Medicago truncatula
Medtr4g102010 Medicago truncatula
Medtr5g011690 Medicago truncatula
Medtr7g074930 Medicago truncatula
Medtr7g092530 Medicago truncatula
MELO3C009082.2 Cucumis melo
MELO3C013992.2 Cucumis melo
Migut.A00843 Erythranthe guttata
Migut.B01637 Erythranthe guttata
Migut.E00982 Erythranthe guttata
Migut.K00062 Erythranthe guttata
MSTRG.10831 Avicennia marina
MSTRG.12051 Avicennia marina
MSTRG.1932 Avicennia marina
MSTRG.20750 Avicennia marina
MSTRG.25555 Avicennia marina
Nitab4.5_0000016g0010 Nicotiana tabacum
Nitab4.5_0000457g0310 Nicotiana tabacum
Nitab4.5_0000633g0040 Nicotiana tabacum
Nitab4.5_0001265g0020 Nicotiana tabacum
Nitab4.5_0001329g0100 Nicotiana tabacum
Nitab4.5_0001816g0210 Nicotiana tabacum
Nitab4.5_0003912g0040 Nicotiana tabacum
Nitab4.5_0005372g0010 Nicotiana tabacum
Nitab4.5_0007130g0010 Nicotiana tabacum
Nitab4.5_0008022g0040 Nicotiana tabacum
Nn1g01229 Nelumbo nucifera
Nn2g15496 Nelumbo nucifera
Nn2g16004 Nelumbo nucifera
Nn8g40939 Nelumbo nucifera
Oeu026880.1 Olea europaea
Oeu026881.1 Olea europaea
Oeu033758.1 Olea europaea
Oeu040061.1 Olea europaea
Oeu056796.1 Olea europaea
Os06g0136500 Oryza sativa ssp. japonica
Os12g0506400 Oryza sativa ssp. japonica
Peaxi162Scf00051g00212 Petunia axillaris
Peaxi162Scf00102g01229 Petunia axillaris
Peaxi162Scf00285g00224 Petunia axillaris
Peaxi162Scf00959g00317 Petunia axillaris
PGR004G1477 Punica granatum
PGR031G0493 Punica granatum
PGR031G2333 Punica granatum
PGSC0003DMG400007015 Solanum tuberosum
PGSC0003DMG400012484 Solanum tuberosum
PGSC0003DMG400017581 Solanum tuberosum
PGSC0003DMG401012773 Solanum tuberosum
PGSC0003DMG402012773 Solanum tuberosum
Phvul.001G138400 Phaseolus vulgaris
Phvul.002G151200 Phaseolus vulgaris
Phvul.003G215700 Phaseolus vulgaris
Phvul.007G256900 Phaseolus vulgaris
Phvul.008G076200 Phaseolus vulgaris
Potri.001G116100 Populus trichocarpa
Potri.002G148500 Populus trichocarpa
Potri.003G116400 Populus trichocarpa
Potri.006G057300 Populus trichocarpa
Potri.016G051000 Populus trichocarpa
Pp3c11_17020 Physcomitrium patens
Pp3c7_11500 Physcomitrium patens
PRCOL_00001064 Prasinoderma coloniale
Prupe.2G146000 Prunus persica
Prupe.5G080900 Prunus persica
Prupe.7G070300 Prunus persica
Psat2g179920 Pisum sativum
Psat3g070360 Pisum sativum
Psat3g115760 Pisum sativum
Psat4g069120 Pisum sativum
Psat6g072480 Pisum sativum
PSO339G2796 Papaver somniferum
PSO384G4669 Papaver somniferum
PSO478G4034 Papaver somniferum
PSO782G2319 Papaver somniferum
QL07p022315 Quercus lobata
QL12p015319 Quercus lobata
QL93p1910_0004 Quercus lobata
RcHm_v2.0_Chr1g0350611 Rosa chinensis
RcHm_v2.0_Chr1g0366241 Rosa chinensis
RcHm_v2.0_Chr1g0366251 Rosa chinensis
RcHm_v2.0_Chr3g0480731 Rosa chinensis
RcHm_v2.0_Chr3g0490911 Rosa chinensis
RcHm_v2.0_Chr3g0490921 Rosa chinensis
RcHm_v2.0_Chr3g0492201 Rosa chinensis
RcHm_v2.0_Chr3g0492211 Rosa chinensis
RcHm_v2.0_Chr7g0201081 Rosa chinensis
Rhsim01G0147500 Rhododendron simsii
Rhsim04G0099200 Rhododendron simsii
Rhsim07G0101000 Rhododendron simsii
Sabra01G0089200 Salix brachista
Sabra03G0080900 Salix brachista
Sabra06G0040400 Salix brachista
Sabra16G0054800 Salix brachista
SalBow1G6798 Salvia bowleyana
SalBow1G7576 Salvia bowleyana
Sc01g0009160 Simmondsia chinensis
Sc22g0000530 Simmondsia chinensis
Sc25g0005190 Simmondsia chinensis
Sc25g0005480 Simmondsia chinensis
Sed0000675 Sechium edule
Sed0007317 Sechium edule
Sed0012862 Sechium edule
Sed0026529 Sechium edule
Sed0026878 Sechium edule
Sed0027784 Sechium edule
SEGI_34594 Sequoiadendron giganteum
SGA_v2.0_scaffold146G36191 Striga asiatica
SGA_v2.0_scaffold196G40940 Striga asiatica
SGA_v2.0_scaffold273G46447 Striga asiatica
SGA_v2.0_scaffold37G14845 Striga asiatica
SMO115G0342 Selaginella moellendorffii
Solyc03g063970.3 Solanum lycopersicum
Solyc05g051030.3 Solanum lycopersicum
Solyc06g060550.3 Solanum lycopersicum
Solyc08g007510.3 Solanum lycopersicum
Sopen01g037110 Solanum pennellii
Sopen03g017630 Solanum pennellii
Sopen06g020680 Solanum pennellii
Sopen08g003470 Solanum pennellii
Sp1g10990 Schrenkiella parvula
Sp2g01730 Schrenkiella parvula
Sp3g10420 Schrenkiella parvula
Sp6g05410 Schrenkiella parvula
TAR104G0002 Trochodendron aralioides
TAR369G0875 Trochodendron aralioides
TAR374G0060 Trochodendron aralioides
TAR375G0731 Trochodendron aralioides
TAR633G0901 Trochodendron aralioides
THA.LOC104809920 Tarenaya hassleriana
THA.LOC104813950 Tarenaya hassleriana
THA.LOC104818359 Tarenaya hassleriana
THA.LOC104823560 Tarenaya hassleriana
Thecc.01G375900 Theobroma cacao
Thecc.03G263000 Theobroma cacao
Thecc.05G165500 Theobroma cacao
Thhalv10009832m.g Eutrema salsugineum
Thhalv10021709m.g Eutrema salsugineum
Thhalv10023753m.g Eutrema salsugineum
Thhalv10029061m.g Eutrema salsugineum
TPR.G25629 Trifolium pratense
TPR.G28854 Trifolium pratense
TPR.G37674 Trifolium pratense
TPR.G4708 Trifolium pratense
TPR.G57 Trifolium pratense
TWI59G0626 Tripterygium wilfordii
TWI60G0234 Tripterygium wilfordii
TWI81G0009 Tripterygium wilfordii
unitig_21.g20365 Utricularia gibba
unitig_744.g24440 Utricularia gibba
vmacro09096 Vaccinium macrocarpon
vmacro14038 Vaccinium macrocarpon
vmacro21006 Vaccinium macrocarpon
VMungo0251G1951 Vigna mungo
VMungo0720G1570 Vigna mungo
VMungo1215G1929 Vigna mungo
VMungo1383G1483 Vigna mungo
VMungo1383G3262 Vigna mungo
Zm00001eb264160 Zea mays
Zm00001eb270040 Zea mays

User provided reference genes

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