Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001598', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '403', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p33170' => 'bna', 'A02p42210' => 'bna', 'A03p10390' => 'bna', 'A06p28990' => 'bna', 'Aa31LG11G1330' => 'aar', 'Aa31LG1G13740' => 'aar', 'Aa31LG2G7420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1323' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1064' => 'aag', 'Actinidia22467' => 'ach', 'Actinidia36797' => 'ach', 'Ah.08g222590' => 'amhyb', 'Ah.13g078030' => 'amhyb', 'AL5G12440' => 'aly', 'AL6G32560' => 'aly', 'AL8G39090' => 'aly', 'Aqoxy3G00689' => 'aox', 'Aqoxy3G02341' => 'aox', 'Aqoxy7G03836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4UW9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WK4WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TX8HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUM29L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS34PQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4M8GV' => 'arhy', 'AT2G02880' => 'ath', 'AT5G20990' => 'ath', 'AT5G62270' => 'ath', 'ATR0215G007' => 'atr', 'ATR0564G259' => 'atr', 'ATR0757G133' => 'atr', 'Atru.chr11.1498' => 'acertr', 'Atru.chr11.1822' => 'acertr', 'Atru.chr3.2751' => 'acertr', 'Atru.chr4.1342' => 'acertr', 'Atru.ctg664.11' => 'acertr', 'AUR62001598' => 'cqu', 'AUR62005754' => 'cqu', 'AUR62018568' => 'cqu', 'AUR62020182' => 'cqu', 'AUR62020850' => 'cqu', 'AUR62028804' => 'cqu', 'AUR62028805' => 'cqu', 'BcaB07g29787' => 'bca', 'BcaB07g30318' => 'bca', 'BcaB08g37328' => 'bca', 'BcaB08g37330' => 'bca', 'BcaC01g06921' => 'bca', 'BcaC03g17175' => 'bca', 'BcaC03g18140' => 'bca', 'BcaC04g19497' => 'bca', 'BcaNung06719' => 'bca', 'BcaNung07379' => 'bca', 'BolC2t11190H' => 'bol', 'BolC2t12266H' => 'bol', 'BolC3t13663H' => 'bol', 'BolC3t18718H' => 'bol', 'BraA02t08340Z' => 'bra', 'BraA02t09150Z' => 'bra', 'BraA03t10351Z' => 'bra', 'BraA06t25844Z' => 'bra', 'C02p50980' => 'bna', 'C02p62070' => 'bna', 'C03p11930' => 'bna', 'C03p64600' => 'bna', 'CAN.G1156.51' => 'can', 'CAN.G38.31' => 'can', 'CAN.G651.7' => 'can', 'CANSAT54G2824' => 'cansat', 'CANSAT64G1213' => 'cansat', 'CANSAT80G0504' => 'cansat', 'CARHR145320' => 'chi', 'CARHR191850' => 'chi', 'CARHR276050' => 'chi', 'Carub.0005s0177' => 'cru', 'Carub.0006s1931' => 'cru', 'Carub.0008s2296' => 'cru', 'Ca_01999_v3' => 'car', 'Ca_04769_v3' => 'car', 'Ca_06138_v3' => 'car', 'Ca_30734_v3' => 'car', 'CBR_g53784' => 'cbr', 'CBR_g8921' => 'cbr', 'Cc01_g06370' => 'ccan', 'Cc01_g07890' => 'ccan', 'Cc01_g10680' => 'ccan', 'Cc11_g13210' => 'ccan', 'CDE02G2133' => 'cde', 'CDE03G0379' => 'cde', 'CDE06G0993' => 'cde', 'CDE06G1865' => 'cde', 'CDE06G1877' => 'cde', 'CDE06G2705' => 'cde', 'Cfa015220' => 'cfa', 'Ciclev10014503m.g' => 'ccl', 'Ciclev10020578m.g' => 'ccl', 'Ciclev10032165m.g' => 'ccl', 'CiPaw.01G173400' => 'cil', 'CiPaw.02G103200' => 'cil', 'CiPaw.05G137200' => 'cil', 'CiPaw.13G127200' => 'cil', 'ClCG03G014280' => 'cla', 'ClCG03G014390' => 'cla', 'ClCG10G002790' => 'cla', 'COL.COLO4_20174' => 'col', 'COL.COLO4_22982' => 'col', 'COL.COLO4_25318' => 'col', 'Cpa.g.c40120' => 'cpa', 'Cpa.g.sc128.1' => 'cpa', 'Cpa.g.sc136.35' => 'cpa', 'Cpa.g.sc1763.1' => 'cpa', 'Cpa.g.sc34.224' => 'cpa', 'Cpa.g.sc48.118' => 'cpa', 'Cre06.g254600' => 'cre', 'Cre06.g282150' => 'cre', 'Cre10.g451400' => 'cre', 'CsaV3_1G041840' => 'csa', 'CsaV3_1G041940' => 'csa', 'CsaV3_3G002830' => 'csa', 'CSS0008753' => 'camsi', 'CSS0022192' => 'camsi', 'CSS0038227' => 'camsi', 'CSS0038856' => 'camsi', 'CSS0041589' => 'camsi', 'CSS0046041' => 'camsi', 'CSS0048937' => 'camsi', 'DCAR_000741' => 'dca', 'DCAR_013251' => 'dca', 'DCAR_021706' => 'dca', 'Dinv16629' => 'din', 'Dinv32128' => 'din', 'Dinv44166' => 'din', 'Duzib212G0742' => 'dzi', 'Duzib251G0726' => 'dzi', 'ECA234G4840' => 'eca', 'ECA236G0081' => 'eca', 'ECA247G1799' => 'eca', 'EL10Ac3g07464' => 'bvu', 'EL10Ac6g13181' => 'bvu', 'EL10Ac7g16239' => 'bvu', 'Eucgr.G02513' => 'egr', 'Eucgr.H00336' => 'egr', 'Eucgr.J00614' => 'egr', 'FAN07G2650' => 'fan', 'FAN11G0362' => 'fan', 'FAN11G2542' => 'fan', 'FAN12G4270' => 'fan', 'FAN16G3208' => 'fan', 'FAN17G2100' => 'fan', 'FAN21G0325' => 'fan', 'FAN25G1601' => 'fan', 'FAN25G3483' => 'fan', 'FvH4_3g26250' => 'fve', 'FvH4_3g26260' => 'fve', 'FvH4_4g31560' => 'fve', 'Glyma.01G045300' => 'gma', 'Glyma.02G105700' => 'gma', 'Glyma.02G272700' => 'gma', 'Glyma.09G051800' => 'gma', 'Glyma.14G045450' => 'gma', 'Glyma.15G158100' => 'gma', 'Glyma.16G121250' => 'gma', 'Gohir.A02G020800' => 'ghi', 'Gohir.A03G104500' => 'ghi', 'Gohir.A05G076000' => 'ghi', 'Gohir.D02G024800' => 'ghi', 'Gohir.D02G129600' => 'ghi', 'Gohir.D02G129700' => 'ghi', 'Gohir.D03G140800' => 'ghi', 'Gohir.D03G140900' => 'ghi', 'Gohir.D05G078700' => 'ghi', 'Gohir.D05G085901' => 'ghi', 'Gohir.D11G326400' => 'ghi', 'Gohir.D12G167300' => 'ghi', 'Gorai.003G147700' => 'gra', 'Gorai.005G030700' => 'gra', 'Gorai.005G145600' => 'gra', 'Gorai.008G180200' => 'gra', 'Gorai.009G080100' => 'gra', 'GSVIVG01023007001' => 'vvi', 'GSVIVG01037501001' => 'vvi', 'GSVIVG01038094001' => 'vvi', 'HanXRQChr06g0180651' => 'han', 'HanXRQChr07g0205981' => 'han', 'HanXRQChr12g0371061' => 'han', 'Haze_00082' => 'cav', 'Haze_01397' => 'cav', 'Haze_12029' => 'cav', 'Haze_23633' => 'cav', 'Hma1.2p1_0218F.1_g092460' => 'hma', 'HPP92_013448' => 'vpl', 'HPP92_013468' => 'vpl', 'HPP92_013469' => 'vpl', 'HPP92_015460' => 'vpl', 'HPP92_016856' => 'vpl', 'HPP92_016914' => 'vpl', 'Hund10980' => 'sun', 'Hund14885' => 'sun', 'Hund20974' => 'sun', 'Hund25254' => 'sun', 'Lalb_Chr10g0098161' => 'lal', 'Lalb_Chr10g0105801' => 'lal', 'Lalb_Chr18g0052141' => 'lal', 'Lj2A895G19' => 'lonja', 'Lj2A895T22' => 'lonja', 'Lj2C893G11' => 'lonja', 'Lj2C893T10' => 'lonja', 'Lj2g0010789' => 'lja', 'Lj3C1039T11' => 'lonja', 'Lj5A679G28' => 'lonja', 'Lj6g0023615' => 'lja', 'Lj8A728T10' => 'lonja', 'LjContig00564g0017485' => 'lja', 'Lsat_1_v5_gn_2_37520' => 'lsa', 'Lsat_1_v5_gn_8_112440' => 'lsa', 'Lsat_1_v5_gn_8_4521' => 'lsa', 'Lsat_1_v5_gn_8_69520' => 'lsa', 'Manes.06G018600' => 'mes', 'Manes.11G103300' => 'mes', 'Manes.11G105600' => 'mes', 'Mapoly0056s0125' => 'mpo', 'Mapoly0087s0082' => 'mpo', 'Mapoly1495s0001' => 'mpo', 'MBI05_g28392_MAGBIO' => 'mbi', 'MBI07_g03077_MAGBIO' => 'mbi', 'MBI07_g03083_MAGBIO' => 'mbi', 'MCO03G199' => 'mco', 'MCO09G295' => 'mco', 'MCO16G120' => 'mco', 'MD00G1080400' => 'mdo', 'MD03G1229800' => 'mdo', 'MD05G1272100' => 'mdo', 'MD10G1276700' => 'mdo', 'MD11G1181200' => 'mdo', 'MD11G1250300' => 'mdo', 'MD12G1168900' => 'mdo', 'MD13G1073900' => 'mdo', 'MD16G1075100' => 'mdo', 'Medtr1g102335' => 'mtr', 'Medtr5g039440' => 'mtr', 'Medtr5g087490' => 'mtr', 'MELO3C013949.2' => 'cme', 'MELO3C015599.2' => 'cme', 'MELO3C015610.2' => 'cme', 'Migut.D00847' => 'egut', 'Migut.L01310' => 'egut', 'Migut.N02410' => 'egut', 'MSTRG.12417' => 'ama', 'MSTRG.21240' => 'ama', 'MSTRG.691' => 'ama', 'Nitab4.5_0000141g0270' => 'nta', 'Nitab4.5_0000428g0110' => 'nta', 'Nitab4.5_0000496g0060' => 'nta', 'Nitab4.5_0002300g0120' => 'nta', 'Nitab4.5_0002704g0060' => 'nta', 'Nitab4.5_0003566g0010' => 'nta', 'Nn1g00103' => 'nnu', 'Nn1g08035' => 'nnu', 'Nn1g09429' => 'nnu', 'Nn4g23114' => 'nnu', 'Nn7g37454' => 'nnu', 'Oeu013623.1' => 'oeu', 'Oeu027580.1' => 'oeu', 'Oeu027581.1' => 'oeu', 'Oeu050015.1' => 'oeu', 'Oeu051504.1' => 'oeu', 'Os01g0801700' => 'osa', 'Os03g0379400' => 'osa', 'Os04g0661600' => 'osa', 'Peaxi162Scf00007g01329' => 'pax', 'Peaxi162Scf00026g03113' => 'pax', 'Peaxi162Scf00050g02227' => 'pax', 'PGR119G0245' => 'pgr', 'PGR119G0480' => 'pgr', 'PGR142G2642' => 'pgr', 'PGSC0003DMG400005941' => 'stu', 'PGSC0003DMG400009618' => 'stu', 'Phvul.002G086800' => 'pvu', 'Phvul.008G209600' => 'pvu', 'Phvul.009G242000' => 'pvu', 'Potri.007G133900' => 'ptr', 'Potri.009G156400' => 'ptr', 'Potri.012G021000' => 'ptr', 'Potri.015G004400' => 'ptr', 'Potri.017G017901' => 'ptr', 'Pp3c14_4050' => 'ppa', 'Pp3c23_9160' => 'ppa', 'Pp3c24_4220' => 'ppa', 'PRCOL_00002568' => 'pco', 'Prupe.1G272100' => 'ppe', 'Prupe.3G107100' => 'ppe', 'Prupe.4G179500' => 'ppe', 'Prupe.6G153900' => 'ppe', 'Psat2g023160' => 'psa', 'Psat2g121440' => 'psa', 'Psat5g075120' => 'psa', 'PSO017G4006' => 'pso', 'PSO063G3912' => 'pso', 'PSO063G3947' => 'pso', 'PSO210G4030' => 'pso', 'PSO478G0282' => 'pso', 'PSO782G1531' => 'pso', 'PSO832G4559' => 'pso', 'QL01p007286' => 'qlo', 'QL01p007301' => 'qlo', 'QL03p060335' => 'qlo', 'QL03p064604' => 'qlo', 'QL10p006125' => 'qlo', 'RcHm_v2.0_Chr4g0440071' => 'rch', 'RcHm_v2.0_Chr5g0048741' => 'rch', 'RcHm_v2.0_Chr5g0048751' => 'rch', 'Rhsim01G0197500' => 'rsi', 'Rhsim12G0173100' => 'rsi', 'Sabra04G0059300' => 'sbr', 'Sabra07G0108700' => 'sbr', 'Sabra07G0121000' => 'sbr', 'Sabra09G0122500' => 'sbr', 'Sabra12G0003000' => 'sbr', 'Sabra15G0003000' => 'sbr', 'SalBow2G2991' => 'sbo', 'SalBow2G3361' => 'sbo', 'SalBow3G4459' => 'sbo', 'Sc01g0005570' => 'sci', 'Sc11g0001820' => 'sci', 'Sc21g0006570' => 'sci', 'Sc25g0002290' => 'sci', 'Sed0000960' => 'sed', 'Sed0001025' => 'sed', 'Sed0011075' => 'sed', 'SEGI_00915' => 'sgi', 'SEGI_02371' => 'sgi', 'SEGI_27969' => 'sgi', 'SEGI_28205' => 'sgi', 'SEGI_32063' => 'sgi', 'SEGI_32430' => 'sgi', 'SEGI_37017' => 'sgi', 'SGA_v2.0_scaffold154G37192' => 'sas', 'SGA_v2.0_scaffold16G07584' => 'sas', 'SGA_v2.0_scaffold1G00702' => 'sas', 'SGA_v2.0_scaffold25G11133' => 'sas', 'SGA_v2.0_scaffold28G11982' => 'sas', 'SGA_v2.0_scaffold4653G54517' => 'sas', 'SGA_v2.0_scaffold53G19414' => 'sas', 'SGA_v2.0_scaffold6G03251' => 'sas', 'SHI25334' => 'shi', 'SHI25335' => 'shi', 'SHI53821' => 'shi', 'SMO145G0256' => 'smo', 'SMO236G0017' => 'smo', 'SMO307G0084' => 'smo', 'Solyc01g009050.3' => 'sly', 'Solyc01g010570.4' => 'sly', 'Solyc05g056510.3' => 'sly', 'Sopen01g004540' => 'spe', 'Sopen01g006220' => 'spe', 'Sopen05g034910' => 'spe', 'Sp2g13960' => 'spa', 'Sp2g25470' => 'spa', 'Sp6g23530' => 'spa', 'TAR374G1328' => 'tar', 'TAR375G0698' => 'tar', 'TAR626G1975' => 'tar', 'TAR627G0849' => 'tar', 'TAR629G0383' => 'tar', 'TAR629G1744' => 'tar', 'THA.LOC104805152' => 'tha', 'THA.LOC104820518' => 'tha', 'THA.LOC104821398' => 'tha', 'Thecc.02G349900' => 'tca', 'Thecc.04G200200' => 'tca', 'Thecc.09G265000' => 'tca', 'Thhalv10000666m.g' => 'esa', 'Thhalv10004417m.g' => 'esa', 'Thhalv10004617m.g' => 'esa', 'Thhalv10010049m.g' => 'esa', 'Thhalv10012894m.g' => 'esa', 'Thhalv10026429m.g' => 'esa', 'TPR.G11462' => 'tpr', 'TPR.G11692' => 'tpr', 'TPR.G22712' => 'tpr', 'TPR.G24627' => 'tpr', 'TPR.G31851' => 'tpr', 'TPR.G37035' => 'tpr', 'TWI18G0113' => 'twi', 'TWI31G0930' => 'twi', 'TWI36G1000' => 'twi', 'TWI56G1164' => 'twi', 'unitig_22.g6913' => 'ugi', 'unitig_699.g19728' => 'ugi', 'unitig_8.g2986' => 'ugi', 'vmacro14297' => 'vma', 'vmacro16663' => 'vma', 'vmacro23059' => 'vma', 'VMungo0647G2429' => 'vmu', 'VMungo1215G3305' => 'vmu', 'VMungo1309G2065' => 'vmu', 'Zm00001eb067470' => 'zma', 'Zm00001eb150640' => 'zma', 'Zm00001eb369380' => 'zma', 'Zm00001eb392280' => 'zma', 'Zm00001eb432770' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001598', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001598' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001598', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '403', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001598' ) ), 'genes' => array( 'A02p33170' => 'bna', 'A02p42210' => 'bna', 'A03p10390' => 'bna', 'A06p28990' => 'bna', 'Aa31LG11G1330' => 'aar', 'Aa31LG1G13740' => 'aar', 'Aa31LG2G7420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1323' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1064' => 'aag', 'Actinidia22467' => 'ach', 'Actinidia36797' => 'ach', 'Ah.08g222590' => 'amhyb', 'Ah.13g078030' => 'amhyb', 'AL5G12440' => 'aly', 'AL6G32560' => 'aly', 'AL8G39090' => 'aly', 'Aqoxy3G00689' => 'aox', 'Aqoxy3G02341' => 'aox', 'Aqoxy7G03836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4UW9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WK4WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TX8HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUM29L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS34PQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4M8GV' => 'arhy', 'AT2G02880' => 'ath', 'AT5G20990' => 'ath', 'AT5G62270' => 'ath', 'ATR0215G007' => 'atr', 'ATR0564G259' => 'atr', 'ATR0757G133' => 'atr', 'Atru.chr11.1498' => 'acertr', 'Atru.chr11.1822' => 'acertr', 'Atru.chr3.2751' => 'acertr', 'Atru.chr4.1342' => 'acertr', 'Atru.ctg664.11' => 'acertr', 'AUR62001598' => 'cqu', 'AUR62005754' => 'cqu', 'AUR62018568' => 'cqu', 'AUR62020182' => 'cqu', 'AUR62020850' => 'cqu', 'AUR62028804' => 'cqu', 'AUR62028805' => 'cqu', 'BcaB07g29787' => 'bca', 'BcaB07g30318' => 'bca', 'BcaB08g37328' => 'bca', 'BcaB08g37330' => 'bca', 'BcaC01g06921' => 'bca', 'BcaC03g17175' => 'bca', 'BcaC03g18140' => 'bca', 'BcaC04g19497' => 'bca', 'BcaNung06719' => 'bca', 'BcaNung07379' => 'bca', 'BolC2t11190H' => 'bol', 'BolC2t12266H' => 'bol', 'BolC3t13663H' => 'bol', 'BolC3t18718H' => 'bol', 'BraA02t08340Z' => 'bra', 'BraA02t09150Z' => 'bra', 'BraA03t10351Z' => 'bra', 'BraA06t25844Z' => 'bra', 'C02p50980' => 'bna', 'C02p62070' => 'bna', 'C03p11930' => 'bna', 'C03p64600' => 'bna', 'CAN.G1156.51' => 'can', 'CAN.G38.31' => 'can', 'CAN.G651.7' => 'can', 'CANSAT54G2824' => 'cansat', 'CANSAT64G1213' => 'cansat', 'CANSAT80G0504' => 'cansat', 'CARHR145320' => 'chi', 'CARHR191850' => 'chi', 'CARHR276050' => 'chi', 'Carub.0005s0177' => 'cru', 'Carub.0006s1931' => 'cru', 'Carub.0008s2296' => 'cru', 'Ca_01999_v3' => 'car', 'Ca_04769_v3' => 'car', 'Ca_06138_v3' => 'car', 'Ca_30734_v3' => 'car', 'CBR_g53784' => 'cbr', 'CBR_g8921' => 'cbr', 'Cc01_g06370' => 'ccan', 'Cc01_g07890' => 'ccan', 'Cc01_g10680' => 'ccan', 'Cc11_g13210' => 'ccan', 'CDE02G2133' => 'cde', 'CDE03G0379' => 'cde', 'CDE06G0993' => 'cde', 'CDE06G1865' => 'cde', 'CDE06G1877' => 'cde', 'CDE06G2705' => 'cde', 'Cfa015220' => 'cfa', 'Ciclev10014503m.g' => 'ccl', 'Ciclev10020578m.g' => 'ccl', 'Ciclev10032165m.g' => 'ccl', 'CiPaw.01G173400' => 'cil', 'CiPaw.02G103200' => 'cil', 'CiPaw.05G137200' => 'cil', 'CiPaw.13G127200' => 'cil', 'ClCG03G014280' => 'cla', 'ClCG03G014390' => 'cla', 'ClCG10G002790' => 'cla', 'COL.COLO4_20174' => 'col', 'COL.COLO4_22982' => 'col', 'COL.COLO4_25318' => 'col', 'Cpa.g.c40120' => 'cpa', 'Cpa.g.sc128.1' => 'cpa', 'Cpa.g.sc136.35' => 'cpa', 'Cpa.g.sc1763.1' => 'cpa', 'Cpa.g.sc34.224' => 'cpa', 'Cpa.g.sc48.118' => 'cpa', 'Cre06.g254600' => 'cre', 'Cre06.g282150' => 'cre', 'Cre10.g451400' => 'cre', 'CsaV3_1G041840' => 'csa', 'CsaV3_1G041940' => 'csa', 'CsaV3_3G002830' => 'csa', 'CSS0008753' => 'camsi', 'CSS0022192' => 'camsi', 'CSS0038227' => 'camsi', 'CSS0038856' => 'camsi', 'CSS0041589' => 'camsi', 'CSS0046041' => 'camsi', 'CSS0048937' => 'camsi', 'DCAR_000741' => 'dca', 'DCAR_013251' => 'dca', 'DCAR_021706' => 'dca', 'Dinv16629' => 'din', 'Dinv32128' => 'din', 'Dinv44166' => 'din', 'Duzib212G0742' => 'dzi', 'Duzib251G0726' => 'dzi', 'ECA234G4840' => 'eca', 'ECA236G0081' => 'eca', 'ECA247G1799' => 'eca', 'EL10Ac3g07464' => 'bvu', 'EL10Ac6g13181' => 'bvu', 'EL10Ac7g16239' => 'bvu', 'Eucgr.G02513' => 'egr', 'Eucgr.H00336' => 'egr', 'Eucgr.J00614' => 'egr', 'FAN07G2650' => 'fan', 'FAN11G0362' => 'fan', 'FAN11G2542' => 'fan', 'FAN12G4270' => 'fan', 'FAN16G3208' => 'fan', 'FAN17G2100' => 'fan', 'FAN21G0325' => 'fan', 'FAN25G1601' => 'fan', 'FAN25G3483' => 'fan', 'FvH4_3g26250' => 'fve', 'FvH4_3g26260' => 'fve', 'FvH4_4g31560' => 'fve', 'Glyma.01G045300' => 'gma', 'Glyma.02G105700' => 'gma', 'Glyma.02G272700' => 'gma', 'Glyma.09G051800' => 'gma', 'Glyma.14G045450' => 'gma', 'Glyma.15G158100' => 'gma', 'Glyma.16G121250' => 'gma', 'Gohir.A02G020800' => 'ghi', 'Gohir.A03G104500' => 'ghi', 'Gohir.A05G076000' => 'ghi', 'Gohir.D02G024800' => 'ghi', 'Gohir.D02G129600' => 'ghi', 'Gohir.D02G129700' => 'ghi', 'Gohir.D03G140800' => 'ghi', 'Gohir.D03G140900' => 'ghi', 'Gohir.D05G078700' => 'ghi', 'Gohir.D05G085901' => 'ghi', 'Gohir.D11G326400' => 'ghi', 'Gohir.D12G167300' => 'ghi', 'Gorai.003G147700' => 'gra', 'Gorai.005G030700' => 'gra', 'Gorai.005G145600' => 'gra', 'Gorai.008G180200' => 'gra', 'Gorai.009G080100' => 'gra', 'GSVIVG01023007001' => 'vvi', 'GSVIVG01037501001' => 'vvi', 'GSVIVG01038094001' => 'vvi', 'HanXRQChr06g0180651' => 'han', 'HanXRQChr07g0205981' => 'han', 'HanXRQChr12g0371061' => 'han', 'Haze_00082' => 'cav', 'Haze_01397' => 'cav', 'Haze_12029' => 'cav', 'Haze_23633' => 'cav', 'Hma1.2p1_0218F.1_g092460' => 'hma', 'HPP92_013448' => 'vpl', 'HPP92_013468' => 'vpl', 'HPP92_013469' => 'vpl', 'HPP92_015460' => 'vpl', 'HPP92_016856' => 'vpl', 'HPP92_016914' => 'vpl', 'Hund10980' => 'sun', 'Hund14885' => 'sun', 'Hund20974' => 'sun', 'Hund25254' => 'sun', 'Lalb_Chr10g0098161' => 'lal', 'Lalb_Chr10g0105801' => 'lal', 'Lalb_Chr18g0052141' => 'lal', 'Lj2A895G19' => 'lonja', 'Lj2A895T22' => 'lonja', 'Lj2C893G11' => 'lonja', 'Lj2C893T10' => 'lonja', 'Lj2g0010789' => 'lja', 'Lj3C1039T11' => 'lonja', 'Lj5A679G28' => 'lonja', 'Lj6g0023615' => 'lja', 'Lj8A728T10' => 'lonja', 'LjContig00564g0017485' => 'lja', 'Lsat_1_v5_gn_2_37520' => 'lsa', 'Lsat_1_v5_gn_8_112440' => 'lsa', 'Lsat_1_v5_gn_8_4521' => 'lsa', 'Lsat_1_v5_gn_8_69520' => 'lsa', 'Manes.06G018600' => 'mes', 'Manes.11G103300' => 'mes', 'Manes.11G105600' => 'mes', 'Mapoly0056s0125' => 'mpo', 'Mapoly0087s0082' => 'mpo', 'Mapoly1495s0001' => 'mpo', 'MBI05_g28392_MAGBIO' => 'mbi', 'MBI07_g03077_MAGBIO' => 'mbi', 'MBI07_g03083_MAGBIO' => 'mbi', 'MCO03G199' => 'mco', 'MCO09G295' => 'mco', 'MCO16G120' => 'mco', 'MD00G1080400' => 'mdo', 'MD03G1229800' => 'mdo', 'MD05G1272100' => 'mdo', 'MD10G1276700' => 'mdo', 'MD11G1181200' => 'mdo', 'MD11G1250300' => 'mdo', 'MD12G1168900' => 'mdo', 'MD13G1073900' => 'mdo', 'MD16G1075100' => 'mdo', 'Medtr1g102335' => 'mtr', 'Medtr5g039440' => 'mtr', 'Medtr5g087490' => 'mtr', 'MELO3C013949.2' => 'cme', 'MELO3C015599.2' => 'cme', 'MELO3C015610.2' => 'cme', 'Migut.D00847' => 'egut', 'Migut.L01310' => 'egut', 'Migut.N02410' => 'egut', 'MSTRG.12417' => 'ama', 'MSTRG.21240' => 'ama', 'MSTRG.691' => 'ama', 'Nitab4.5_0000141g0270' => 'nta', 'Nitab4.5_0000428g0110' => 'nta', 'Nitab4.5_0000496g0060' => 'nta', 'Nitab4.5_0002300g0120' => 'nta', 'Nitab4.5_0002704g0060' => 'nta', 'Nitab4.5_0003566g0010' => 'nta', 'Nn1g00103' => 'nnu', 'Nn1g08035' => 'nnu', 'Nn1g09429' => 'nnu', 'Nn4g23114' => 'nnu', 'Nn7g37454' => 'nnu', 'Oeu013623.1' => 'oeu', 'Oeu027580.1' => 'oeu', 'Oeu027581.1' => 'oeu', 'Oeu050015.1' => 'oeu', 'Oeu051504.1' => 'oeu', 'Os01g0801700' => 'osa', 'Os03g0379400' => 'osa', 'Os04g0661600' => 'osa', 'Peaxi162Scf00007g01329' => 'pax', 'Peaxi162Scf00026g03113' => 'pax', 'Peaxi162Scf00050g02227' => 'pax', 'PGR119G0245' => 'pgr', 'PGR119G0480' => 'pgr', 'PGR142G2642' => 'pgr', 'PGSC0003DMG400005941' => 'stu', 'PGSC0003DMG400009618' => 'stu', 'Phvul.002G086800' => 'pvu', 'Phvul.008G209600' => 'pvu', 'Phvul.009G242000' => 'pvu', 'Potri.007G133900' => 'ptr', 'Potri.009G156400' => 'ptr', 'Potri.012G021000' => 'ptr', 'Potri.015G004400' => 'ptr', 'Potri.017G017901' => 'ptr', 'Pp3c14_4050' => 'ppa', 'Pp3c23_9160' => 'ppa', 'Pp3c24_4220' => 'ppa', 'PRCOL_00002568' => 'pco', 'Prupe.1G272100' => 'ppe', 'Prupe.3G107100' => 'ppe', 'Prupe.4G179500' => 'ppe', 'Prupe.6G153900' => 'ppe', 'Psat2g023160' => 'psa', 'Psat2g121440' => 'psa', 'Psat5g075120' => 'psa', 'PSO017G4006' => 'pso', 'PSO063G3912' => 'pso', 'PSO063G3947' => 'pso', 'PSO210G4030' => 'pso', 'PSO478G0282' => 'pso', 'PSO782G1531' => 'pso', 'PSO832G4559' => 'pso', 'QL01p007286' => 'qlo', 'QL01p007301' => 'qlo', 'QL03p060335' => 'qlo', 'QL03p064604' => 'qlo', 'QL10p006125' => 'qlo', 'RcHm_v2.0_Chr4g0440071' => 'rch', 'RcHm_v2.0_Chr5g0048741' => 'rch', 'RcHm_v2.0_Chr5g0048751' => 'rch', 'Rhsim01G0197500' => 'rsi', 'Rhsim12G0173100' => 'rsi', 'Sabra04G0059300' => 'sbr', 'Sabra07G0108700' => 'sbr', 'Sabra07G0121000' => 'sbr', 'Sabra09G0122500' => 'sbr', 'Sabra12G0003000' => 'sbr', 'Sabra15G0003000' => 'sbr', 'SalBow2G2991' => 'sbo', 'SalBow2G3361' => 'sbo', 'SalBow3G4459' => 'sbo', 'Sc01g0005570' => 'sci', 'Sc11g0001820' => 'sci', 'Sc21g0006570' => 'sci', 'Sc25g0002290' => 'sci', 'Sed0000960' => 'sed', 'Sed0001025' => 'sed', 'Sed0011075' => 'sed', 'SEGI_00915' => 'sgi', 'SEGI_02371' => 'sgi', 'SEGI_27969' => 'sgi', 'SEGI_28205' => 'sgi', 'SEGI_32063' => 'sgi', 'SEGI_32430' => 'sgi', 'SEGI_37017' => 'sgi', 'SGA_v2.0_scaffold154G37192' => 'sas', 'SGA_v2.0_scaffold16G07584' => 'sas', 'SGA_v2.0_scaffold1G00702' => 'sas', 'SGA_v2.0_scaffold25G11133' => 'sas', 'SGA_v2.0_scaffold28G11982' => 'sas', 'SGA_v2.0_scaffold4653G54517' => 'sas', 'SGA_v2.0_scaffold53G19414' => 'sas', 'SGA_v2.0_scaffold6G03251' => 'sas', 'SHI25334' => 'shi', 'SHI25335' => 'shi', 'SHI53821' => 'shi', 'SMO145G0256' => 'smo', 'SMO236G0017' => 'smo', 'SMO307G0084' => 'smo', 'Solyc01g009050.3' => 'sly', 'Solyc01g010570.4' => 'sly', 'Solyc05g056510.3' => 'sly', 'Sopen01g004540' => 'spe', 'Sopen01g006220' => 'spe', 'Sopen05g034910' => 'spe', 'Sp2g13960' => 'spa', 'Sp2g25470' => 'spa', 'Sp6g23530' => 'spa', 'TAR374G1328' => 'tar', 'TAR375G0698' => 'tar', 'TAR626G1975' => 'tar', 'TAR627G0849' => 'tar', 'TAR629G0383' => 'tar', 'TAR629G1744' => 'tar', 'THA.LOC104805152' => 'tha', 'THA.LOC104820518' => 'tha', 'THA.LOC104821398' => 'tha', 'Thecc.02G349900' => 'tca', 'Thecc.04G200200' => 'tca', 'Thecc.09G265000' => 'tca', 'Thhalv10000666m.g' => 'esa', 'Thhalv10004417m.g' => 'esa', 'Thhalv10004617m.g' => 'esa', 'Thhalv10010049m.g' => 'esa', 'Thhalv10012894m.g' => 'esa', 'Thhalv10026429m.g' => 'esa', 'TPR.G11462' => 'tpr', 'TPR.G11692' => 'tpr', 'TPR.G22712' => 'tpr', 'TPR.G24627' => 'tpr', 'TPR.G31851' => 'tpr', 'TPR.G37035' => 'tpr', 'TWI18G0113' => 'twi', 'TWI31G0930' => 'twi', 'TWI36G1000' => 'twi', 'TWI56G1164' => 'twi', 'unitig_22.g6913' => 'ugi', 'unitig_699.g19728' => 'ugi', 'unitig_8.g2986' => 'ugi', 'vmacro14297' => 'vma', 'vmacro16663' => 'vma', 'vmacro23059' => 'vma', 'VMungo0647G2429' => 'vmu', 'VMungo1215G3305' => 'vmu', 'VMungo1309G2065' => 'vmu', 'Zm00001eb067470' => 'zma', 'Zm00001eb150640' => 'zma', 'Zm00001eb369380' => 'zma', 'Zm00001eb392280' => 'zma', 'Zm00001eb432770' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001598' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001598' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001598' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001598' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001598', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '403', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p33170' => 'bna', 'A02p42210' => 'bna', 'A03p10390' => 'bna', 'A06p28990' => 'bna', 'Aa31LG11G1330' => 'aar', 'Aa31LG1G13740' => 'aar', 'Aa31LG2G7420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1323' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1064' => 'aag', 'Actinidia22467' => 'ach', 'Actinidia36797' => 'ach', 'Ah.08g222590' => 'amhyb', 'Ah.13g078030' => 'amhyb', 'AL5G12440' => 'aly', 'AL6G32560' => 'aly', 'AL8G39090' => 'aly', 'Aqoxy3G00689' => 'aox', 'Aqoxy3G02341' => 'aox', 'Aqoxy7G03836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4UW9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WK4WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TX8HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUM29L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS34PQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4M8GV' => 'arhy', 'AT2G02880' => 'ath', 'AT5G20990' => 'ath', 'AT5G62270' => 'ath', 'ATR0215G007' => 'atr', 'ATR0564G259' => 'atr', 'ATR0757G133' => 'atr', 'Atru.chr11.1498' => 'acertr', 'Atru.chr11.1822' => 'acertr', 'Atru.chr3.2751' => 'acertr', 'Atru.chr4.1342' => 'acertr', 'Atru.ctg664.11' => 'acertr', 'AUR62001598' => 'cqu', 'AUR62005754' => 'cqu', 'AUR62018568' => 'cqu', 'AUR62020182' => 'cqu', 'AUR62020850' => 'cqu', 'AUR62028804' => 'cqu', 'AUR62028805' => 'cqu', 'BcaB07g29787' => 'bca', 'BcaB07g30318' => 'bca', 'BcaB08g37328' => 'bca', 'BcaB08g37330' => 'bca', 'BcaC01g06921' => 'bca', 'BcaC03g17175' => 'bca', 'BcaC03g18140' => 'bca', 'BcaC04g19497' => 'bca', 'BcaNung06719' => 'bca', 'BcaNung07379' => 'bca', 'BolC2t11190H' => 'bol', 'BolC2t12266H' => 'bol', 'BolC3t13663H' => 'bol', 'BolC3t18718H' => 'bol', 'BraA02t08340Z' => 'bra', 'BraA02t09150Z' => 'bra', 'BraA03t10351Z' => 'bra', 'BraA06t25844Z' => 'bra', 'C02p50980' => 'bna', 'C02p62070' => 'bna', 'C03p11930' => 'bna', 'C03p64600' => 'bna', 'CAN.G1156.51' => 'can', 'CAN.G38.31' => 'can', 'CAN.G651.7' => 'can', 'CANSAT54G2824' => 'cansat', 'CANSAT64G1213' => 'cansat', 'CANSAT80G0504' => 'cansat', 'CARHR145320' => 'chi', 'CARHR191850' => 'chi', 'CARHR276050' => 'chi', 'Carub.0005s0177' => 'cru', 'Carub.0006s1931' => 'cru', 'Carub.0008s2296' => 'cru', 'Ca_01999_v3' => 'car', 'Ca_04769_v3' => 'car', 'Ca_06138_v3' => 'car', 'Ca_30734_v3' => 'car', 'CBR_g53784' => 'cbr', 'CBR_g8921' => 'cbr', 'Cc01_g06370' => 'ccan', 'Cc01_g07890' => 'ccan', 'Cc01_g10680' => 'ccan', 'Cc11_g13210' => 'ccan', 'CDE02G2133' => 'cde', 'CDE03G0379' => 'cde', 'CDE06G0993' => 'cde', 'CDE06G1865' => 'cde', 'CDE06G1877' => 'cde', 'CDE06G2705' => 'cde', 'Cfa015220' => 'cfa', 'Ciclev10014503m.g' => 'ccl', 'Ciclev10020578m.g' => 'ccl', 'Ciclev10032165m.g' => 'ccl', 'CiPaw.01G173400' => 'cil', 'CiPaw.02G103200' => 'cil', 'CiPaw.05G137200' => 'cil', 'CiPaw.13G127200' => 'cil', 'ClCG03G014280' => 'cla', 'ClCG03G014390' => 'cla', 'ClCG10G002790' => 'cla', 'COL.COLO4_20174' => 'col', 'COL.COLO4_22982' => 'col', 'COL.COLO4_25318' => 'col', 'Cpa.g.c40120' => 'cpa', 'Cpa.g.sc128.1' => 'cpa', 'Cpa.g.sc136.35' => 'cpa', 'Cpa.g.sc1763.1' => 'cpa', 'Cpa.g.sc34.224' => 'cpa', 'Cpa.g.sc48.118' => 'cpa', 'Cre06.g254600' => 'cre', 'Cre06.g282150' => 'cre', 'Cre10.g451400' => 'cre', 'CsaV3_1G041840' => 'csa', 'CsaV3_1G041940' => 'csa', 'CsaV3_3G002830' => 'csa', 'CSS0008753' => 'camsi', 'CSS0022192' => 'camsi', 'CSS0038227' => 'camsi', 'CSS0038856' => 'camsi', 'CSS0041589' => 'camsi', 'CSS0046041' => 'camsi', 'CSS0048937' => 'camsi', 'DCAR_000741' => 'dca', 'DCAR_013251' => 'dca', 'DCAR_021706' => 'dca', 'Dinv16629' => 'din', 'Dinv32128' => 'din', 'Dinv44166' => 'din', 'Duzib212G0742' => 'dzi', 'Duzib251G0726' => 'dzi', 'ECA234G4840' => 'eca', 'ECA236G0081' => 'eca', 'ECA247G1799' => 'eca', 'EL10Ac3g07464' => 'bvu', 'EL10Ac6g13181' => 'bvu', 'EL10Ac7g16239' => 'bvu', 'Eucgr.G02513' => 'egr', 'Eucgr.H00336' => 'egr', 'Eucgr.J00614' => 'egr', 'FAN07G2650' => 'fan', 'FAN11G0362' => 'fan', 'FAN11G2542' => 'fan', 'FAN12G4270' => 'fan', 'FAN16G3208' => 'fan', 'FAN17G2100' => 'fan', 'FAN21G0325' => 'fan', 'FAN25G1601' => 'fan', 'FAN25G3483' => 'fan', 'FvH4_3g26250' => 'fve', 'FvH4_3g26260' => 'fve', 'FvH4_4g31560' => 'fve', 'Glyma.01G045300' => 'gma', 'Glyma.02G105700' => 'gma', 'Glyma.02G272700' => 'gma', 'Glyma.09G051800' => 'gma', 'Glyma.14G045450' => 'gma', 'Glyma.15G158100' => 'gma', 'Glyma.16G121250' => 'gma', 'Gohir.A02G020800' => 'ghi', 'Gohir.A03G104500' => 'ghi', 'Gohir.A05G076000' => 'ghi', 'Gohir.D02G024800' => 'ghi', 'Gohir.D02G129600' => 'ghi', 'Gohir.D02G129700' => 'ghi', 'Gohir.D03G140800' => 'ghi', 'Gohir.D03G140900' => 'ghi', 'Gohir.D05G078700' => 'ghi', 'Gohir.D05G085901' => 'ghi', 'Gohir.D11G326400' => 'ghi', 'Gohir.D12G167300' => 'ghi', 'Gorai.003G147700' => 'gra', 'Gorai.005G030700' => 'gra', 'Gorai.005G145600' => 'gra', 'Gorai.008G180200' => 'gra', 'Gorai.009G080100' => 'gra', 'GSVIVG01023007001' => 'vvi', 'GSVIVG01037501001' => 'vvi', 'GSVIVG01038094001' => 'vvi', 'HanXRQChr06g0180651' => 'han', 'HanXRQChr07g0205981' => 'han', 'HanXRQChr12g0371061' => 'han', 'Haze_00082' => 'cav', 'Haze_01397' => 'cav', 'Haze_12029' => 'cav', 'Haze_23633' => 'cav', 'Hma1.2p1_0218F.1_g092460' => 'hma', 'HPP92_013448' => 'vpl', 'HPP92_013468' => 'vpl', 'HPP92_013469' => 'vpl', 'HPP92_015460' => 'vpl', 'HPP92_016856' => 'vpl', 'HPP92_016914' => 'vpl', 'Hund10980' => 'sun', 'Hund14885' => 'sun', 'Hund20974' => 'sun', 'Hund25254' => 'sun', 'Lalb_Chr10g0098161' => 'lal', 'Lalb_Chr10g0105801' => 'lal', 'Lalb_Chr18g0052141' => 'lal', 'Lj2A895G19' => 'lonja', 'Lj2A895T22' => 'lonja', 'Lj2C893G11' => 'lonja', 'Lj2C893T10' => 'lonja', 'Lj2g0010789' => 'lja', 'Lj3C1039T11' => 'lonja', 'Lj5A679G28' => 'lonja', 'Lj6g0023615' => 'lja', 'Lj8A728T10' => 'lonja', 'LjContig00564g0017485' => 'lja', 'Lsat_1_v5_gn_2_37520' => 'lsa', 'Lsat_1_v5_gn_8_112440' => 'lsa', 'Lsat_1_v5_gn_8_4521' => 'lsa', 'Lsat_1_v5_gn_8_69520' => 'lsa', 'Manes.06G018600' => 'mes', 'Manes.11G103300' => 'mes', 'Manes.11G105600' => 'mes', 'Mapoly0056s0125' => 'mpo', 'Mapoly0087s0082' => 'mpo', 'Mapoly1495s0001' => 'mpo', 'MBI05_g28392_MAGBIO' => 'mbi', 'MBI07_g03077_MAGBIO' => 'mbi', 'MBI07_g03083_MAGBIO' => 'mbi', 'MCO03G199' => 'mco', 'MCO09G295' => 'mco', 'MCO16G120' => 'mco', 'MD00G1080400' => 'mdo', 'MD03G1229800' => 'mdo', 'MD05G1272100' => 'mdo', 'MD10G1276700' => 'mdo', 'MD11G1181200' => 'mdo', 'MD11G1250300' => 'mdo', 'MD12G1168900' => 'mdo', 'MD13G1073900' => 'mdo', 'MD16G1075100' => 'mdo', 'Medtr1g102335' => 'mtr', 'Medtr5g039440' => 'mtr', 'Medtr5g087490' => 'mtr', 'MELO3C013949.2' => 'cme', 'MELO3C015599.2' => 'cme', 'MELO3C015610.2' => 'cme', 'Migut.D00847' => 'egut', 'Migut.L01310' => 'egut', 'Migut.N02410' => 'egut', 'MSTRG.12417' => 'ama', 'MSTRG.21240' => 'ama', 'MSTRG.691' => 'ama', 'Nitab4.5_0000141g0270' => 'nta', 'Nitab4.5_0000428g0110' => 'nta', 'Nitab4.5_0000496g0060' => 'nta', 'Nitab4.5_0002300g0120' => 'nta', 'Nitab4.5_0002704g0060' => 'nta', 'Nitab4.5_0003566g0010' => 'nta', 'Nn1g00103' => 'nnu', 'Nn1g08035' => 'nnu', 'Nn1g09429' => 'nnu', 'Nn4g23114' => 'nnu', 'Nn7g37454' => 'nnu', 'Oeu013623.1' => 'oeu', 'Oeu027580.1' => 'oeu', 'Oeu027581.1' => 'oeu', 'Oeu050015.1' => 'oeu', 'Oeu051504.1' => 'oeu', 'Os01g0801700' => 'osa', 'Os03g0379400' => 'osa', 'Os04g0661600' => 'osa', 'Peaxi162Scf00007g01329' => 'pax', 'Peaxi162Scf00026g03113' => 'pax', 'Peaxi162Scf00050g02227' => 'pax', 'PGR119G0245' => 'pgr', 'PGR119G0480' => 'pgr', 'PGR142G2642' => 'pgr', 'PGSC0003DMG400005941' => 'stu', 'PGSC0003DMG400009618' => 'stu', 'Phvul.002G086800' => 'pvu', 'Phvul.008G209600' => 'pvu', 'Phvul.009G242000' => 'pvu', 'Potri.007G133900' => 'ptr', 'Potri.009G156400' => 'ptr', 'Potri.012G021000' => 'ptr', 'Potri.015G004400' => 'ptr', 'Potri.017G017901' => 'ptr', 'Pp3c14_4050' => 'ppa', 'Pp3c23_9160' => 'ppa', 'Pp3c24_4220' => 'ppa', 'PRCOL_00002568' => 'pco', 'Prupe.1G272100' => 'ppe', 'Prupe.3G107100' => 'ppe', 'Prupe.4G179500' => 'ppe', 'Prupe.6G153900' => 'ppe', 'Psat2g023160' => 'psa', 'Psat2g121440' => 'psa', 'Psat5g075120' => 'psa', 'PSO017G4006' => 'pso', 'PSO063G3912' => 'pso', 'PSO063G3947' => 'pso', 'PSO210G4030' => 'pso', 'PSO478G0282' => 'pso', 'PSO782G1531' => 'pso', 'PSO832G4559' => 'pso', 'QL01p007286' => 'qlo', 'QL01p007301' => 'qlo', 'QL03p060335' => 'qlo', 'QL03p064604' => 'qlo', 'QL10p006125' => 'qlo', 'RcHm_v2.0_Chr4g0440071' => 'rch', 'RcHm_v2.0_Chr5g0048741' => 'rch', 'RcHm_v2.0_Chr5g0048751' => 'rch', 'Rhsim01G0197500' => 'rsi', 'Rhsim12G0173100' => 'rsi', 'Sabra04G0059300' => 'sbr', 'Sabra07G0108700' => 'sbr', 'Sabra07G0121000' => 'sbr', 'Sabra09G0122500' => 'sbr', 'Sabra12G0003000' => 'sbr', 'Sabra15G0003000' => 'sbr', 'SalBow2G2991' => 'sbo', 'SalBow2G3361' => 'sbo', 'SalBow3G4459' => 'sbo', 'Sc01g0005570' => 'sci', 'Sc11g0001820' => 'sci', 'Sc21g0006570' => 'sci', 'Sc25g0002290' => 'sci', 'Sed0000960' => 'sed', 'Sed0001025' => 'sed', 'Sed0011075' => 'sed', 'SEGI_00915' => 'sgi', 'SEGI_02371' => 'sgi', 'SEGI_27969' => 'sgi', 'SEGI_28205' => 'sgi', 'SEGI_32063' => 'sgi', 'SEGI_32430' => 'sgi', 'SEGI_37017' => 'sgi', 'SGA_v2.0_scaffold154G37192' => 'sas', 'SGA_v2.0_scaffold16G07584' => 'sas', 'SGA_v2.0_scaffold1G00702' => 'sas', 'SGA_v2.0_scaffold25G11133' => 'sas', 'SGA_v2.0_scaffold28G11982' => 'sas', 'SGA_v2.0_scaffold4653G54517' => 'sas', 'SGA_v2.0_scaffold53G19414' => 'sas', 'SGA_v2.0_scaffold6G03251' => 'sas', 'SHI25334' => 'shi', 'SHI25335' => 'shi', 'SHI53821' => 'shi', 'SMO145G0256' => 'smo', 'SMO236G0017' => 'smo', 'SMO307G0084' => 'smo', 'Solyc01g009050.3' => 'sly', 'Solyc01g010570.4' => 'sly', 'Solyc05g056510.3' => 'sly', 'Sopen01g004540' => 'spe', 'Sopen01g006220' => 'spe', 'Sopen05g034910' => 'spe', 'Sp2g13960' => 'spa', 'Sp2g25470' => 'spa', 'Sp6g23530' => 'spa', 'TAR374G1328' => 'tar', 'TAR375G0698' => 'tar', 'TAR626G1975' => 'tar', 'TAR627G0849' => 'tar', 'TAR629G0383' => 'tar', 'TAR629G1744' => 'tar', 'THA.LOC104805152' => 'tha', 'THA.LOC104820518' => 'tha', 'THA.LOC104821398' => 'tha', 'Thecc.02G349900' => 'tca', 'Thecc.04G200200' => 'tca', 'Thecc.09G265000' => 'tca', 'Thhalv10000666m.g' => 'esa', 'Thhalv10004417m.g' => 'esa', 'Thhalv10004617m.g' => 'esa', 'Thhalv10010049m.g' => 'esa', 'Thhalv10012894m.g' => 'esa', 'Thhalv10026429m.g' => 'esa', 'TPR.G11462' => 'tpr', 'TPR.G11692' => 'tpr', 'TPR.G22712' => 'tpr', 'TPR.G24627' => 'tpr', 'TPR.G31851' => 'tpr', 'TPR.G37035' => 'tpr', 'TWI18G0113' => 'twi', 'TWI31G0930' => 'twi', 'TWI36G1000' => 'twi', 'TWI56G1164' => 'twi', 'unitig_22.g6913' => 'ugi', 'unitig_699.g19728' => 'ugi', 'unitig_8.g2986' => 'ugi', 'vmacro14297' => 'vma', 'vmacro16663' => 'vma', 'vmacro23059' => 'vma', 'VMungo0647G2429' => 'vmu', 'VMungo1215G3305' => 'vmu', 'VMungo1309G2065' => 'vmu', 'Zm00001eb067470' => 'zma', 'Zm00001eb150640' => 'zma', 'Zm00001eb369380' => 'zma', 'Zm00001eb392280' => 'zma', 'Zm00001eb432770' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001598', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001598' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001598', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '403', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001598' ) ), 'genes' => array( 'A02p33170' => 'bna', 'A02p42210' => 'bna', 'A03p10390' => 'bna', 'A06p28990' => 'bna', 'Aa31LG11G1330' => 'aar', 'Aa31LG1G13740' => 'aar', 'Aa31LG2G7420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1323' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1064' => 'aag', 'Actinidia22467' => 'ach', 'Actinidia36797' => 'ach', 'Ah.08g222590' => 'amhyb', 'Ah.13g078030' => 'amhyb', 'AL5G12440' => 'aly', 'AL6G32560' => 'aly', 'AL8G39090' => 'aly', 'Aqoxy3G00689' => 'aox', 'Aqoxy3G02341' => 'aox', 'Aqoxy7G03836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4UW9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WK4WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TX8HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUM29L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS34PQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4M8GV' => 'arhy', 'AT2G02880' => 'ath', 'AT5G20990' => 'ath', 'AT5G62270' => 'ath', 'ATR0215G007' => 'atr', 'ATR0564G259' => 'atr', 'ATR0757G133' => 'atr', 'Atru.chr11.1498' => 'acertr', 'Atru.chr11.1822' => 'acertr', 'Atru.chr3.2751' => 'acertr', 'Atru.chr4.1342' => 'acertr', 'Atru.ctg664.11' => 'acertr', 'AUR62001598' => 'cqu', 'AUR62005754' => 'cqu', 'AUR62018568' => 'cqu', 'AUR62020182' => 'cqu', 'AUR62020850' => 'cqu', 'AUR62028804' => 'cqu', 'AUR62028805' => 'cqu', 'BcaB07g29787' => 'bca', 'BcaB07g30318' => 'bca', 'BcaB08g37328' => 'bca', 'BcaB08g37330' => 'bca', 'BcaC01g06921' => 'bca', 'BcaC03g17175' => 'bca', 'BcaC03g18140' => 'bca', 'BcaC04g19497' => 'bca', 'BcaNung06719' => 'bca', 'BcaNung07379' => 'bca', 'BolC2t11190H' => 'bol', 'BolC2t12266H' => 'bol', 'BolC3t13663H' => 'bol', 'BolC3t18718H' => 'bol', 'BraA02t08340Z' => 'bra', 'BraA02t09150Z' => 'bra', 'BraA03t10351Z' => 'bra', 'BraA06t25844Z' => 'bra', 'C02p50980' => 'bna', 'C02p62070' => 'bna', 'C03p11930' => 'bna', 'C03p64600' => 'bna', 'CAN.G1156.51' => 'can', 'CAN.G38.31' => 'can', 'CAN.G651.7' => 'can', 'CANSAT54G2824' => 'cansat', 'CANSAT64G1213' => 'cansat', 'CANSAT80G0504' => 'cansat', 'CARHR145320' => 'chi', 'CARHR191850' => 'chi', 'CARHR276050' => 'chi', 'Carub.0005s0177' => 'cru', 'Carub.0006s1931' => 'cru', 'Carub.0008s2296' => 'cru', 'Ca_01999_v3' => 'car', 'Ca_04769_v3' => 'car', 'Ca_06138_v3' => 'car', 'Ca_30734_v3' => 'car', 'CBR_g53784' => 'cbr', 'CBR_g8921' => 'cbr', 'Cc01_g06370' => 'ccan', 'Cc01_g07890' => 'ccan', 'Cc01_g10680' => 'ccan', 'Cc11_g13210' => 'ccan', 'CDE02G2133' => 'cde', 'CDE03G0379' => 'cde', 'CDE06G0993' => 'cde', 'CDE06G1865' => 'cde', 'CDE06G1877' => 'cde', 'CDE06G2705' => 'cde', 'Cfa015220' => 'cfa', 'Ciclev10014503m.g' => 'ccl', 'Ciclev10020578m.g' => 'ccl', 'Ciclev10032165m.g' => 'ccl', 'CiPaw.01G173400' => 'cil', 'CiPaw.02G103200' => 'cil', 'CiPaw.05G137200' => 'cil', 'CiPaw.13G127200' => 'cil', 'ClCG03G014280' => 'cla', 'ClCG03G014390' => 'cla', 'ClCG10G002790' => 'cla', 'COL.COLO4_20174' => 'col', 'COL.COLO4_22982' => 'col', 'COL.COLO4_25318' => 'col', 'Cpa.g.c40120' => 'cpa', 'Cpa.g.sc128.1' => 'cpa', 'Cpa.g.sc136.35' => 'cpa', 'Cpa.g.sc1763.1' => 'cpa', 'Cpa.g.sc34.224' => 'cpa', 'Cpa.g.sc48.118' => 'cpa', 'Cre06.g254600' => 'cre', 'Cre06.g282150' => 'cre', 'Cre10.g451400' => 'cre', 'CsaV3_1G041840' => 'csa', 'CsaV3_1G041940' => 'csa', 'CsaV3_3G002830' => 'csa', 'CSS0008753' => 'camsi', 'CSS0022192' => 'camsi', 'CSS0038227' => 'camsi', 'CSS0038856' => 'camsi', 'CSS0041589' => 'camsi', 'CSS0046041' => 'camsi', 'CSS0048937' => 'camsi', 'DCAR_000741' => 'dca', 'DCAR_013251' => 'dca', 'DCAR_021706' => 'dca', 'Dinv16629' => 'din', 'Dinv32128' => 'din', 'Dinv44166' => 'din', 'Duzib212G0742' => 'dzi', 'Duzib251G0726' => 'dzi', 'ECA234G4840' => 'eca', 'ECA236G0081' => 'eca', 'ECA247G1799' => 'eca', 'EL10Ac3g07464' => 'bvu', 'EL10Ac6g13181' => 'bvu', 'EL10Ac7g16239' => 'bvu', 'Eucgr.G02513' => 'egr', 'Eucgr.H00336' => 'egr', 'Eucgr.J00614' => 'egr', 'FAN07G2650' => 'fan', 'FAN11G0362' => 'fan', 'FAN11G2542' => 'fan', 'FAN12G4270' => 'fan', 'FAN16G3208' => 'fan', 'FAN17G2100' => 'fan', 'FAN21G0325' => 'fan', 'FAN25G1601' => 'fan', 'FAN25G3483' => 'fan', 'FvH4_3g26250' => 'fve', 'FvH4_3g26260' => 'fve', 'FvH4_4g31560' => 'fve', 'Glyma.01G045300' => 'gma', 'Glyma.02G105700' => 'gma', 'Glyma.02G272700' => 'gma', 'Glyma.09G051800' => 'gma', 'Glyma.14G045450' => 'gma', 'Glyma.15G158100' => 'gma', 'Glyma.16G121250' => 'gma', 'Gohir.A02G020800' => 'ghi', 'Gohir.A03G104500' => 'ghi', 'Gohir.A05G076000' => 'ghi', 'Gohir.D02G024800' => 'ghi', 'Gohir.D02G129600' => 'ghi', 'Gohir.D02G129700' => 'ghi', 'Gohir.D03G140800' => 'ghi', 'Gohir.D03G140900' => 'ghi', 'Gohir.D05G078700' => 'ghi', 'Gohir.D05G085901' => 'ghi', 'Gohir.D11G326400' => 'ghi', 'Gohir.D12G167300' => 'ghi', 'Gorai.003G147700' => 'gra', 'Gorai.005G030700' => 'gra', 'Gorai.005G145600' => 'gra', 'Gorai.008G180200' => 'gra', 'Gorai.009G080100' => 'gra', 'GSVIVG01023007001' => 'vvi', 'GSVIVG01037501001' => 'vvi', 'GSVIVG01038094001' => 'vvi', 'HanXRQChr06g0180651' => 'han', 'HanXRQChr07g0205981' => 'han', 'HanXRQChr12g0371061' => 'han', 'Haze_00082' => 'cav', 'Haze_01397' => 'cav', 'Haze_12029' => 'cav', 'Haze_23633' => 'cav', 'Hma1.2p1_0218F.1_g092460' => 'hma', 'HPP92_013448' => 'vpl', 'HPP92_013468' => 'vpl', 'HPP92_013469' => 'vpl', 'HPP92_015460' => 'vpl', 'HPP92_016856' => 'vpl', 'HPP92_016914' => 'vpl', 'Hund10980' => 'sun', 'Hund14885' => 'sun', 'Hund20974' => 'sun', 'Hund25254' => 'sun', 'Lalb_Chr10g0098161' => 'lal', 'Lalb_Chr10g0105801' => 'lal', 'Lalb_Chr18g0052141' => 'lal', 'Lj2A895G19' => 'lonja', 'Lj2A895T22' => 'lonja', 'Lj2C893G11' => 'lonja', 'Lj2C893T10' => 'lonja', 'Lj2g0010789' => 'lja', 'Lj3C1039T11' => 'lonja', 'Lj5A679G28' => 'lonja', 'Lj6g0023615' => 'lja', 'Lj8A728T10' => 'lonja', 'LjContig00564g0017485' => 'lja', 'Lsat_1_v5_gn_2_37520' => 'lsa', 'Lsat_1_v5_gn_8_112440' => 'lsa', 'Lsat_1_v5_gn_8_4521' => 'lsa', 'Lsat_1_v5_gn_8_69520' => 'lsa', 'Manes.06G018600' => 'mes', 'Manes.11G103300' => 'mes', 'Manes.11G105600' => 'mes', 'Mapoly0056s0125' => 'mpo', 'Mapoly0087s0082' => 'mpo', 'Mapoly1495s0001' => 'mpo', 'MBI05_g28392_MAGBIO' => 'mbi', 'MBI07_g03077_MAGBIO' => 'mbi', 'MBI07_g03083_MAGBIO' => 'mbi', 'MCO03G199' => 'mco', 'MCO09G295' => 'mco', 'MCO16G120' => 'mco', 'MD00G1080400' => 'mdo', 'MD03G1229800' => 'mdo', 'MD05G1272100' => 'mdo', 'MD10G1276700' => 'mdo', 'MD11G1181200' => 'mdo', 'MD11G1250300' => 'mdo', 'MD12G1168900' => 'mdo', 'MD13G1073900' => 'mdo', 'MD16G1075100' => 'mdo', 'Medtr1g102335' => 'mtr', 'Medtr5g039440' => 'mtr', 'Medtr5g087490' => 'mtr', 'MELO3C013949.2' => 'cme', 'MELO3C015599.2' => 'cme', 'MELO3C015610.2' => 'cme', 'Migut.D00847' => 'egut', 'Migut.L01310' => 'egut', 'Migut.N02410' => 'egut', 'MSTRG.12417' => 'ama', 'MSTRG.21240' => 'ama', 'MSTRG.691' => 'ama', 'Nitab4.5_0000141g0270' => 'nta', 'Nitab4.5_0000428g0110' => 'nta', 'Nitab4.5_0000496g0060' => 'nta', 'Nitab4.5_0002300g0120' => 'nta', 'Nitab4.5_0002704g0060' => 'nta', 'Nitab4.5_0003566g0010' => 'nta', 'Nn1g00103' => 'nnu', 'Nn1g08035' => 'nnu', 'Nn1g09429' => 'nnu', 'Nn4g23114' => 'nnu', 'Nn7g37454' => 'nnu', 'Oeu013623.1' => 'oeu', 'Oeu027580.1' => 'oeu', 'Oeu027581.1' => 'oeu', 'Oeu050015.1' => 'oeu', 'Oeu051504.1' => 'oeu', 'Os01g0801700' => 'osa', 'Os03g0379400' => 'osa', 'Os04g0661600' => 'osa', 'Peaxi162Scf00007g01329' => 'pax', 'Peaxi162Scf00026g03113' => 'pax', 'Peaxi162Scf00050g02227' => 'pax', 'PGR119G0245' => 'pgr', 'PGR119G0480' => 'pgr', 'PGR142G2642' => 'pgr', 'PGSC0003DMG400005941' => 'stu', 'PGSC0003DMG400009618' => 'stu', 'Phvul.002G086800' => 'pvu', 'Phvul.008G209600' => 'pvu', 'Phvul.009G242000' => 'pvu', 'Potri.007G133900' => 'ptr', 'Potri.009G156400' => 'ptr', 'Potri.012G021000' => 'ptr', 'Potri.015G004400' => 'ptr', 'Potri.017G017901' => 'ptr', 'Pp3c14_4050' => 'ppa', 'Pp3c23_9160' => 'ppa', 'Pp3c24_4220' => 'ppa', 'PRCOL_00002568' => 'pco', 'Prupe.1G272100' => 'ppe', 'Prupe.3G107100' => 'ppe', 'Prupe.4G179500' => 'ppe', 'Prupe.6G153900' => 'ppe', 'Psat2g023160' => 'psa', 'Psat2g121440' => 'psa', 'Psat5g075120' => 'psa', 'PSO017G4006' => 'pso', 'PSO063G3912' => 'pso', 'PSO063G3947' => 'pso', 'PSO210G4030' => 'pso', 'PSO478G0282' => 'pso', 'PSO782G1531' => 'pso', 'PSO832G4559' => 'pso', 'QL01p007286' => 'qlo', 'QL01p007301' => 'qlo', 'QL03p060335' => 'qlo', 'QL03p064604' => 'qlo', 'QL10p006125' => 'qlo', 'RcHm_v2.0_Chr4g0440071' => 'rch', 'RcHm_v2.0_Chr5g0048741' => 'rch', 'RcHm_v2.0_Chr5g0048751' => 'rch', 'Rhsim01G0197500' => 'rsi', 'Rhsim12G0173100' => 'rsi', 'Sabra04G0059300' => 'sbr', 'Sabra07G0108700' => 'sbr', 'Sabra07G0121000' => 'sbr', 'Sabra09G0122500' => 'sbr', 'Sabra12G0003000' => 'sbr', 'Sabra15G0003000' => 'sbr', 'SalBow2G2991' => 'sbo', 'SalBow2G3361' => 'sbo', 'SalBow3G4459' => 'sbo', 'Sc01g0005570' => 'sci', 'Sc11g0001820' => 'sci', 'Sc21g0006570' => 'sci', 'Sc25g0002290' => 'sci', 'Sed0000960' => 'sed', 'Sed0001025' => 'sed', 'Sed0011075' => 'sed', 'SEGI_00915' => 'sgi', 'SEGI_02371' => 'sgi', 'SEGI_27969' => 'sgi', 'SEGI_28205' => 'sgi', 'SEGI_32063' => 'sgi', 'SEGI_32430' => 'sgi', 'SEGI_37017' => 'sgi', 'SGA_v2.0_scaffold154G37192' => 'sas', 'SGA_v2.0_scaffold16G07584' => 'sas', 'SGA_v2.0_scaffold1G00702' => 'sas', 'SGA_v2.0_scaffold25G11133' => 'sas', 'SGA_v2.0_scaffold28G11982' => 'sas', 'SGA_v2.0_scaffold4653G54517' => 'sas', 'SGA_v2.0_scaffold53G19414' => 'sas', 'SGA_v2.0_scaffold6G03251' => 'sas', 'SHI25334' => 'shi', 'SHI25335' => 'shi', 'SHI53821' => 'shi', 'SMO145G0256' => 'smo', 'SMO236G0017' => 'smo', 'SMO307G0084' => 'smo', 'Solyc01g009050.3' => 'sly', 'Solyc01g010570.4' => 'sly', 'Solyc05g056510.3' => 'sly', 'Sopen01g004540' => 'spe', 'Sopen01g006220' => 'spe', 'Sopen05g034910' => 'spe', 'Sp2g13960' => 'spa', 'Sp2g25470' => 'spa', 'Sp6g23530' => 'spa', 'TAR374G1328' => 'tar', 'TAR375G0698' => 'tar', 'TAR626G1975' => 'tar', 'TAR627G0849' => 'tar', 'TAR629G0383' => 'tar', 'TAR629G1744' => 'tar', 'THA.LOC104805152' => 'tha', 'THA.LOC104820518' => 'tha', 'THA.LOC104821398' => 'tha', 'Thecc.02G349900' => 'tca', 'Thecc.04G200200' => 'tca', 'Thecc.09G265000' => 'tca', 'Thhalv10000666m.g' => 'esa', 'Thhalv10004417m.g' => 'esa', 'Thhalv10004617m.g' => 'esa', 'Thhalv10010049m.g' => 'esa', 'Thhalv10012894m.g' => 'esa', 'Thhalv10026429m.g' => 'esa', 'TPR.G11462' => 'tpr', 'TPR.G11692' => 'tpr', 'TPR.G22712' => 'tpr', 'TPR.G24627' => 'tpr', 'TPR.G31851' => 'tpr', 'TPR.G37035' => 'tpr', 'TWI18G0113' => 'twi', 'TWI31G0930' => 'twi', 'TWI36G1000' => 'twi', 'TWI56G1164' => 'twi', 'unitig_22.g6913' => 'ugi', 'unitig_699.g19728' => 'ugi', 'unitig_8.g2986' => 'ugi', 'vmacro14297' => 'vma', 'vmacro16663' => 'vma', 'vmacro23059' => 'vma', 'VMungo0647G2429' => 'vmu', 'VMungo1215G3305' => 'vmu', 'VMungo1309G2065' => 'vmu', 'Zm00001eb067470' => 'zma', 'Zm00001eb150640' => 'zma', 'Zm00001eb369380' => 'zma', 'Zm00001eb392280' => 'zma', 'Zm00001eb432770' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001598' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001598' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001598' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001598' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001598', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '403', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p33170' => 'bna', 'A02p42210' => 'bna', 'A03p10390' => 'bna', 'A06p28990' => 'bna', 'Aa31LG11G1330' => 'aar', 'Aa31LG1G13740' => 'aar', 'Aa31LG2G7420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1323' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1064' => 'aag', 'Actinidia22467' => 'ach', 'Actinidia36797' => 'ach', 'Ah.08g222590' => 'amhyb', 'Ah.13g078030' => 'amhyb', 'AL5G12440' => 'aly', 'AL6G32560' => 'aly', 'AL8G39090' => 'aly', 'Aqoxy3G00689' => 'aox', 'Aqoxy3G02341' => 'aox', 'Aqoxy7G03836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4UW9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WK4WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TX8HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUM29L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS34PQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4M8GV' => 'arhy', 'AT2G02880' => 'ath', 'AT5G20990' => 'ath', 'AT5G62270' => 'ath', 'ATR0215G007' => 'atr', 'ATR0564G259' => 'atr', 'ATR0757G133' => 'atr', 'Atru.chr11.1498' => 'acertr', 'Atru.chr11.1822' => 'acertr', 'Atru.chr3.2751' => 'acertr', 'Atru.chr4.1342' => 'acertr', 'Atru.ctg664.11' => 'acertr', 'AUR62001598' => 'cqu', 'AUR62005754' => 'cqu', 'AUR62018568' => 'cqu', 'AUR62020182' => 'cqu', 'AUR62020850' => 'cqu', 'AUR62028804' => 'cqu', 'AUR62028805' => 'cqu', 'BcaB07g29787' => 'bca', 'BcaB07g30318' => 'bca', 'BcaB08g37328' => 'bca', 'BcaB08g37330' => 'bca', 'BcaC01g06921' => 'bca', 'BcaC03g17175' => 'bca', 'BcaC03g18140' => 'bca', 'BcaC04g19497' => 'bca', 'BcaNung06719' => 'bca', 'BcaNung07379' => 'bca', 'BolC2t11190H' => 'bol', 'BolC2t12266H' => 'bol', 'BolC3t13663H' => 'bol', 'BolC3t18718H' => 'bol', 'BraA02t08340Z' => 'bra', 'BraA02t09150Z' => 'bra', 'BraA03t10351Z' => 'bra', 'BraA06t25844Z' => 'bra', 'C02p50980' => 'bna', 'C02p62070' => 'bna', 'C03p11930' => 'bna', 'C03p64600' => 'bna', 'CAN.G1156.51' => 'can', 'CAN.G38.31' => 'can', 'CAN.G651.7' => 'can', 'CANSAT54G2824' => 'cansat', 'CANSAT64G1213' => 'cansat', 'CANSAT80G0504' => 'cansat', 'CARHR145320' => 'chi', 'CARHR191850' => 'chi', 'CARHR276050' => 'chi', 'Carub.0005s0177' => 'cru', 'Carub.0006s1931' => 'cru', 'Carub.0008s2296' => 'cru', 'Ca_01999_v3' => 'car', 'Ca_04769_v3' => 'car', 'Ca_06138_v3' => 'car', 'Ca_30734_v3' => 'car', 'CBR_g53784' => 'cbr', 'CBR_g8921' => 'cbr', 'Cc01_g06370' => 'ccan', 'Cc01_g07890' => 'ccan', 'Cc01_g10680' => 'ccan', 'Cc11_g13210' => 'ccan', 'CDE02G2133' => 'cde', 'CDE03G0379' => 'cde', 'CDE06G0993' => 'cde', 'CDE06G1865' => 'cde', 'CDE06G1877' => 'cde', 'CDE06G2705' => 'cde', 'Cfa015220' => 'cfa', 'Ciclev10014503m.g' => 'ccl', 'Ciclev10020578m.g' => 'ccl', 'Ciclev10032165m.g' => 'ccl', 'CiPaw.01G173400' => 'cil', 'CiPaw.02G103200' => 'cil', 'CiPaw.05G137200' => 'cil', 'CiPaw.13G127200' => 'cil', 'ClCG03G014280' => 'cla', 'ClCG03G014390' => 'cla', 'ClCG10G002790' => 'cla', 'COL.COLO4_20174' => 'col', 'COL.COLO4_22982' => 'col', 'COL.COLO4_25318' => 'col', 'Cpa.g.c40120' => 'cpa', 'Cpa.g.sc128.1' => 'cpa', 'Cpa.g.sc136.35' => 'cpa', 'Cpa.g.sc1763.1' => 'cpa', 'Cpa.g.sc34.224' => 'cpa', 'Cpa.g.sc48.118' => 'cpa', 'Cre06.g254600' => 'cre', 'Cre06.g282150' => 'cre', 'Cre10.g451400' => 'cre', 'CsaV3_1G041840' => 'csa', 'CsaV3_1G041940' => 'csa', 'CsaV3_3G002830' => 'csa', 'CSS0008753' => 'camsi', 'CSS0022192' => 'camsi', 'CSS0038227' => 'camsi', 'CSS0038856' => 'camsi', 'CSS0041589' => 'camsi', 'CSS0046041' => 'camsi', 'CSS0048937' => 'camsi', 'DCAR_000741' => 'dca', 'DCAR_013251' => 'dca', 'DCAR_021706' => 'dca', 'Dinv16629' => 'din', 'Dinv32128' => 'din', 'Dinv44166' => 'din', 'Duzib212G0742' => 'dzi', 'Duzib251G0726' => 'dzi', 'ECA234G4840' => 'eca', 'ECA236G0081' => 'eca', 'ECA247G1799' => 'eca', 'EL10Ac3g07464' => 'bvu', 'EL10Ac6g13181' => 'bvu', 'EL10Ac7g16239' => 'bvu', 'Eucgr.G02513' => 'egr', 'Eucgr.H00336' => 'egr', 'Eucgr.J00614' => 'egr', 'FAN07G2650' => 'fan', 'FAN11G0362' => 'fan', 'FAN11G2542' => 'fan', 'FAN12G4270' => 'fan', 'FAN16G3208' => 'fan', 'FAN17G2100' => 'fan', 'FAN21G0325' => 'fan', 'FAN25G1601' => 'fan', 'FAN25G3483' => 'fan', 'FvH4_3g26250' => 'fve', 'FvH4_3g26260' => 'fve', 'FvH4_4g31560' => 'fve', 'Glyma.01G045300' => 'gma', 'Glyma.02G105700' => 'gma', 'Glyma.02G272700' => 'gma', 'Glyma.09G051800' => 'gma', 'Glyma.14G045450' => 'gma', 'Glyma.15G158100' => 'gma', 'Glyma.16G121250' => 'gma', 'Gohir.A02G020800' => 'ghi', 'Gohir.A03G104500' => 'ghi', 'Gohir.A05G076000' => 'ghi', 'Gohir.D02G024800' => 'ghi', 'Gohir.D02G129600' => 'ghi', 'Gohir.D02G129700' => 'ghi', 'Gohir.D03G140800' => 'ghi', 'Gohir.D03G140900' => 'ghi', 'Gohir.D05G078700' => 'ghi', 'Gohir.D05G085901' => 'ghi', 'Gohir.D11G326400' => 'ghi', 'Gohir.D12G167300' => 'ghi', 'Gorai.003G147700' => 'gra', 'Gorai.005G030700' => 'gra', 'Gorai.005G145600' => 'gra', 'Gorai.008G180200' => 'gra', 'Gorai.009G080100' => 'gra', 'GSVIVG01023007001' => 'vvi', 'GSVIVG01037501001' => 'vvi', 'GSVIVG01038094001' => 'vvi', 'HanXRQChr06g0180651' => 'han', 'HanXRQChr07g0205981' => 'han', 'HanXRQChr12g0371061' => 'han', 'Haze_00082' => 'cav', 'Haze_01397' => 'cav', 'Haze_12029' => 'cav', 'Haze_23633' => 'cav', 'Hma1.2p1_0218F.1_g092460' => 'hma', 'HPP92_013448' => 'vpl', 'HPP92_013468' => 'vpl', 'HPP92_013469' => 'vpl', 'HPP92_015460' => 'vpl', 'HPP92_016856' => 'vpl', 'HPP92_016914' => 'vpl', 'Hund10980' => 'sun', 'Hund14885' => 'sun', 'Hund20974' => 'sun', 'Hund25254' => 'sun', 'Lalb_Chr10g0098161' => 'lal', 'Lalb_Chr10g0105801' => 'lal', 'Lalb_Chr18g0052141' => 'lal', 'Lj2A895G19' => 'lonja', 'Lj2A895T22' => 'lonja', 'Lj2C893G11' => 'lonja', 'Lj2C893T10' => 'lonja', 'Lj2g0010789' => 'lja', 'Lj3C1039T11' => 'lonja', 'Lj5A679G28' => 'lonja', 'Lj6g0023615' => 'lja', 'Lj8A728T10' => 'lonja', 'LjContig00564g0017485' => 'lja', 'Lsat_1_v5_gn_2_37520' => 'lsa', 'Lsat_1_v5_gn_8_112440' => 'lsa', 'Lsat_1_v5_gn_8_4521' => 'lsa', 'Lsat_1_v5_gn_8_69520' => 'lsa', 'Manes.06G018600' => 'mes', 'Manes.11G103300' => 'mes', 'Manes.11G105600' => 'mes', 'Mapoly0056s0125' => 'mpo', 'Mapoly0087s0082' => 'mpo', 'Mapoly1495s0001' => 'mpo', 'MBI05_g28392_MAGBIO' => 'mbi', 'MBI07_g03077_MAGBIO' => 'mbi', 'MBI07_g03083_MAGBIO' => 'mbi', 'MCO03G199' => 'mco', 'MCO09G295' => 'mco', 'MCO16G120' => 'mco', 'MD00G1080400' => 'mdo', 'MD03G1229800' => 'mdo', 'MD05G1272100' => 'mdo', 'MD10G1276700' => 'mdo', 'MD11G1181200' => 'mdo', 'MD11G1250300' => 'mdo', 'MD12G1168900' => 'mdo', 'MD13G1073900' => 'mdo', 'MD16G1075100' => 'mdo', 'Medtr1g102335' => 'mtr', 'Medtr5g039440' => 'mtr', 'Medtr5g087490' => 'mtr', 'MELO3C013949.2' => 'cme', 'MELO3C015599.2' => 'cme', 'MELO3C015610.2' => 'cme', 'Migut.D00847' => 'egut', 'Migut.L01310' => 'egut', 'Migut.N02410' => 'egut', 'MSTRG.12417' => 'ama', 'MSTRG.21240' => 'ama', 'MSTRG.691' => 'ama', 'Nitab4.5_0000141g0270' => 'nta', 'Nitab4.5_0000428g0110' => 'nta', 'Nitab4.5_0000496g0060' => 'nta', 'Nitab4.5_0002300g0120' => 'nta', 'Nitab4.5_0002704g0060' => 'nta', 'Nitab4.5_0003566g0010' => 'nta', 'Nn1g00103' => 'nnu', 'Nn1g08035' => 'nnu', 'Nn1g09429' => 'nnu', 'Nn4g23114' => 'nnu', 'Nn7g37454' => 'nnu', 'Oeu013623.1' => 'oeu', 'Oeu027580.1' => 'oeu', 'Oeu027581.1' => 'oeu', 'Oeu050015.1' => 'oeu', 'Oeu051504.1' => 'oeu', 'Os01g0801700' => 'osa', 'Os03g0379400' => 'osa', 'Os04g0661600' => 'osa', 'Peaxi162Scf00007g01329' => 'pax', 'Peaxi162Scf00026g03113' => 'pax', 'Peaxi162Scf00050g02227' => 'pax', 'PGR119G0245' => 'pgr', 'PGR119G0480' => 'pgr', 'PGR142G2642' => 'pgr', 'PGSC0003DMG400005941' => 'stu', 'PGSC0003DMG400009618' => 'stu', 'Phvul.002G086800' => 'pvu', 'Phvul.008G209600' => 'pvu', 'Phvul.009G242000' => 'pvu', 'Potri.007G133900' => 'ptr', 'Potri.009G156400' => 'ptr', 'Potri.012G021000' => 'ptr', 'Potri.015G004400' => 'ptr', 'Potri.017G017901' => 'ptr', 'Pp3c14_4050' => 'ppa', 'Pp3c23_9160' => 'ppa', 'Pp3c24_4220' => 'ppa', 'PRCOL_00002568' => 'pco', 'Prupe.1G272100' => 'ppe', 'Prupe.3G107100' => 'ppe', 'Prupe.4G179500' => 'ppe', 'Prupe.6G153900' => 'ppe', 'Psat2g023160' => 'psa', 'Psat2g121440' => 'psa', 'Psat5g075120' => 'psa', 'PSO017G4006' => 'pso', 'PSO063G3912' => 'pso', 'PSO063G3947' => 'pso', 'PSO210G4030' => 'pso', 'PSO478G0282' => 'pso', 'PSO782G1531' => 'pso', 'PSO832G4559' => 'pso', 'QL01p007286' => 'qlo', 'QL01p007301' => 'qlo', 'QL03p060335' => 'qlo', 'QL03p064604' => 'qlo', 'QL10p006125' => 'qlo', 'RcHm_v2.0_Chr4g0440071' => 'rch', 'RcHm_v2.0_Chr5g0048741' => 'rch', 'RcHm_v2.0_Chr5g0048751' => 'rch', 'Rhsim01G0197500' => 'rsi', 'Rhsim12G0173100' => 'rsi', 'Sabra04G0059300' => 'sbr', 'Sabra07G0108700' => 'sbr', 'Sabra07G0121000' => 'sbr', 'Sabra09G0122500' => 'sbr', 'Sabra12G0003000' => 'sbr', 'Sabra15G0003000' => 'sbr', 'SalBow2G2991' => 'sbo', 'SalBow2G3361' => 'sbo', 'SalBow3G4459' => 'sbo', 'Sc01g0005570' => 'sci', 'Sc11g0001820' => 'sci', 'Sc21g0006570' => 'sci', 'Sc25g0002290' => 'sci', 'Sed0000960' => 'sed', 'Sed0001025' => 'sed', 'Sed0011075' => 'sed', 'SEGI_00915' => 'sgi', 'SEGI_02371' => 'sgi', 'SEGI_27969' => 'sgi', 'SEGI_28205' => 'sgi', 'SEGI_32063' => 'sgi', 'SEGI_32430' => 'sgi', 'SEGI_37017' => 'sgi', 'SGA_v2.0_scaffold154G37192' => 'sas', 'SGA_v2.0_scaffold16G07584' => 'sas', 'SGA_v2.0_scaffold1G00702' => 'sas', 'SGA_v2.0_scaffold25G11133' => 'sas', 'SGA_v2.0_scaffold28G11982' => 'sas', 'SGA_v2.0_scaffold4653G54517' => 'sas', 'SGA_v2.0_scaffold53G19414' => 'sas', 'SGA_v2.0_scaffold6G03251' => 'sas', 'SHI25334' => 'shi', 'SHI25335' => 'shi', 'SHI53821' => 'shi', 'SMO145G0256' => 'smo', 'SMO236G0017' => 'smo', 'SMO307G0084' => 'smo', 'Solyc01g009050.3' => 'sly', 'Solyc01g010570.4' => 'sly', 'Solyc05g056510.3' => 'sly', 'Sopen01g004540' => 'spe', 'Sopen01g006220' => 'spe', 'Sopen05g034910' => 'spe', 'Sp2g13960' => 'spa', 'Sp2g25470' => 'spa', 'Sp6g23530' => 'spa', 'TAR374G1328' => 'tar', 'TAR375G0698' => 'tar', 'TAR626G1975' => 'tar', 'TAR627G0849' => 'tar', 'TAR629G0383' => 'tar', 'TAR629G1744' => 'tar', 'THA.LOC104805152' => 'tha', 'THA.LOC104820518' => 'tha', 'THA.LOC104821398' => 'tha', 'Thecc.02G349900' => 'tca', 'Thecc.04G200200' => 'tca', 'Thecc.09G265000' => 'tca', 'Thhalv10000666m.g' => 'esa', 'Thhalv10004417m.g' => 'esa', 'Thhalv10004617m.g' => 'esa', 'Thhalv10010049m.g' => 'esa', 'Thhalv10012894m.g' => 'esa', 'Thhalv10026429m.g' => 'esa', 'TPR.G11462' => 'tpr', 'TPR.G11692' => 'tpr', 'TPR.G22712' => 'tpr', 'TPR.G24627' => 'tpr', 'TPR.G31851' => 'tpr', 'TPR.G37035' => 'tpr', 'TWI18G0113' => 'twi', 'TWI31G0930' => 'twi', 'TWI36G1000' => 'twi', 'TWI56G1164' => 'twi', 'unitig_22.g6913' => 'ugi', 'unitig_699.g19728' => 'ugi', 'unitig_8.g2986' => 'ugi', 'vmacro14297' => 'vma', 'vmacro16663' => 'vma', 'vmacro23059' => 'vma', 'VMungo0647G2429' => 'vmu', 'VMungo1215G3305' => 'vmu', 'VMungo1309G2065' => 'vmu', 'Zm00001eb067470' => 'zma', 'Zm00001eb150640' => 'zma', 'Zm00001eb369380' => 'zma', 'Zm00001eb392280' => 'zma', 'Zm00001eb432770' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001598', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001598' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001598', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '403', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001598' ) ), 'genes' => array( 'A02p33170' => 'bna', 'A02p42210' => 'bna', 'A03p10390' => 'bna', 'A06p28990' => 'bna', 'Aa31LG11G1330' => 'aar', 'Aa31LG1G13740' => 'aar', 'Aa31LG2G7420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1323' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1064' => 'aag', 'Actinidia22467' => 'ach', 'Actinidia36797' => 'ach', 'Ah.08g222590' => 'amhyb', 'Ah.13g078030' => 'amhyb', 'AL5G12440' => 'aly', 'AL6G32560' => 'aly', 'AL8G39090' => 'aly', 'Aqoxy3G00689' => 'aox', 'Aqoxy3G02341' => 'aox', 'Aqoxy7G03836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4UW9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WK4WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TX8HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUM29L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS34PQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4M8GV' => 'arhy', 'AT2G02880' => 'ath', 'AT5G20990' => 'ath', 'AT5G62270' => 'ath', 'ATR0215G007' => 'atr', 'ATR0564G259' => 'atr', 'ATR0757G133' => 'atr', 'Atru.chr11.1498' => 'acertr', 'Atru.chr11.1822' => 'acertr', 'Atru.chr3.2751' => 'acertr', 'Atru.chr4.1342' => 'acertr', 'Atru.ctg664.11' => 'acertr', 'AUR62001598' => 'cqu', 'AUR62005754' => 'cqu', 'AUR62018568' => 'cqu', 'AUR62020182' => 'cqu', 'AUR62020850' => 'cqu', 'AUR62028804' => 'cqu', 'AUR62028805' => 'cqu', 'BcaB07g29787' => 'bca', 'BcaB07g30318' => 'bca', 'BcaB08g37328' => 'bca', 'BcaB08g37330' => 'bca', 'BcaC01g06921' => 'bca', 'BcaC03g17175' => 'bca', 'BcaC03g18140' => 'bca', 'BcaC04g19497' => 'bca', 'BcaNung06719' => 'bca', 'BcaNung07379' => 'bca', 'BolC2t11190H' => 'bol', 'BolC2t12266H' => 'bol', 'BolC3t13663H' => 'bol', 'BolC3t18718H' => 'bol', 'BraA02t08340Z' => 'bra', 'BraA02t09150Z' => 'bra', 'BraA03t10351Z' => 'bra', 'BraA06t25844Z' => 'bra', 'C02p50980' => 'bna', 'C02p62070' => 'bna', 'C03p11930' => 'bna', 'C03p64600' => 'bna', 'CAN.G1156.51' => 'can', 'CAN.G38.31' => 'can', 'CAN.G651.7' => 'can', 'CANSAT54G2824' => 'cansat', 'CANSAT64G1213' => 'cansat', 'CANSAT80G0504' => 'cansat', 'CARHR145320' => 'chi', 'CARHR191850' => 'chi', 'CARHR276050' => 'chi', 'Carub.0005s0177' => 'cru', 'Carub.0006s1931' => 'cru', 'Carub.0008s2296' => 'cru', 'Ca_01999_v3' => 'car', 'Ca_04769_v3' => 'car', 'Ca_06138_v3' => 'car', 'Ca_30734_v3' => 'car', 'CBR_g53784' => 'cbr', 'CBR_g8921' => 'cbr', 'Cc01_g06370' => 'ccan', 'Cc01_g07890' => 'ccan', 'Cc01_g10680' => 'ccan', 'Cc11_g13210' => 'ccan', 'CDE02G2133' => 'cde', 'CDE03G0379' => 'cde', 'CDE06G0993' => 'cde', 'CDE06G1865' => 'cde', 'CDE06G1877' => 'cde', 'CDE06G2705' => 'cde', 'Cfa015220' => 'cfa', 'Ciclev10014503m.g' => 'ccl', 'Ciclev10020578m.g' => 'ccl', 'Ciclev10032165m.g' => 'ccl', 'CiPaw.01G173400' => 'cil', 'CiPaw.02G103200' => 'cil', 'CiPaw.05G137200' => 'cil', 'CiPaw.13G127200' => 'cil', 'ClCG03G014280' => 'cla', 'ClCG03G014390' => 'cla', 'ClCG10G002790' => 'cla', 'COL.COLO4_20174' => 'col', 'COL.COLO4_22982' => 'col', 'COL.COLO4_25318' => 'col', 'Cpa.g.c40120' => 'cpa', 'Cpa.g.sc128.1' => 'cpa', 'Cpa.g.sc136.35' => 'cpa', 'Cpa.g.sc1763.1' => 'cpa', 'Cpa.g.sc34.224' => 'cpa', 'Cpa.g.sc48.118' => 'cpa', 'Cre06.g254600' => 'cre', 'Cre06.g282150' => 'cre', 'Cre10.g451400' => 'cre', 'CsaV3_1G041840' => 'csa', 'CsaV3_1G041940' => 'csa', 'CsaV3_3G002830' => 'csa', 'CSS0008753' => 'camsi', 'CSS0022192' => 'camsi', 'CSS0038227' => 'camsi', 'CSS0038856' => 'camsi', 'CSS0041589' => 'camsi', 'CSS0046041' => 'camsi', 'CSS0048937' => 'camsi', 'DCAR_000741' => 'dca', 'DCAR_013251' => 'dca', 'DCAR_021706' => 'dca', 'Dinv16629' => 'din', 'Dinv32128' => 'din', 'Dinv44166' => 'din', 'Duzib212G0742' => 'dzi', 'Duzib251G0726' => 'dzi', 'ECA234G4840' => 'eca', 'ECA236G0081' => 'eca', 'ECA247G1799' => 'eca', 'EL10Ac3g07464' => 'bvu', 'EL10Ac6g13181' => 'bvu', 'EL10Ac7g16239' => 'bvu', 'Eucgr.G02513' => 'egr', 'Eucgr.H00336' => 'egr', 'Eucgr.J00614' => 'egr', 'FAN07G2650' => 'fan', 'FAN11G0362' => 'fan', 'FAN11G2542' => 'fan', 'FAN12G4270' => 'fan', 'FAN16G3208' => 'fan', 'FAN17G2100' => 'fan', 'FAN21G0325' => 'fan', 'FAN25G1601' => 'fan', 'FAN25G3483' => 'fan', 'FvH4_3g26250' => 'fve', 'FvH4_3g26260' => 'fve', 'FvH4_4g31560' => 'fve', 'Glyma.01G045300' => 'gma', 'Glyma.02G105700' => 'gma', 'Glyma.02G272700' => 'gma', 'Glyma.09G051800' => 'gma', 'Glyma.14G045450' => 'gma', 'Glyma.15G158100' => 'gma', 'Glyma.16G121250' => 'gma', 'Gohir.A02G020800' => 'ghi', 'Gohir.A03G104500' => 'ghi', 'Gohir.A05G076000' => 'ghi', 'Gohir.D02G024800' => 'ghi', 'Gohir.D02G129600' => 'ghi', 'Gohir.D02G129700' => 'ghi', 'Gohir.D03G140800' => 'ghi', 'Gohir.D03G140900' => 'ghi', 'Gohir.D05G078700' => 'ghi', 'Gohir.D05G085901' => 'ghi', 'Gohir.D11G326400' => 'ghi', 'Gohir.D12G167300' => 'ghi', 'Gorai.003G147700' => 'gra', 'Gorai.005G030700' => 'gra', 'Gorai.005G145600' => 'gra', 'Gorai.008G180200' => 'gra', 'Gorai.009G080100' => 'gra', 'GSVIVG01023007001' => 'vvi', 'GSVIVG01037501001' => 'vvi', 'GSVIVG01038094001' => 'vvi', 'HanXRQChr06g0180651' => 'han', 'HanXRQChr07g0205981' => 'han', 'HanXRQChr12g0371061' => 'han', 'Haze_00082' => 'cav', 'Haze_01397' => 'cav', 'Haze_12029' => 'cav', 'Haze_23633' => 'cav', 'Hma1.2p1_0218F.1_g092460' => 'hma', 'HPP92_013448' => 'vpl', 'HPP92_013468' => 'vpl', 'HPP92_013469' => 'vpl', 'HPP92_015460' => 'vpl', 'HPP92_016856' => 'vpl', 'HPP92_016914' => 'vpl', 'Hund10980' => 'sun', 'Hund14885' => 'sun', 'Hund20974' => 'sun', 'Hund25254' => 'sun', 'Lalb_Chr10g0098161' => 'lal', 'Lalb_Chr10g0105801' => 'lal', 'Lalb_Chr18g0052141' => 'lal', 'Lj2A895G19' => 'lonja', 'Lj2A895T22' => 'lonja', 'Lj2C893G11' => 'lonja', 'Lj2C893T10' => 'lonja', 'Lj2g0010789' => 'lja', 'Lj3C1039T11' => 'lonja', 'Lj5A679G28' => 'lonja', 'Lj6g0023615' => 'lja', 'Lj8A728T10' => 'lonja', 'LjContig00564g0017485' => 'lja', 'Lsat_1_v5_gn_2_37520' => 'lsa', 'Lsat_1_v5_gn_8_112440' => 'lsa', 'Lsat_1_v5_gn_8_4521' => 'lsa', 'Lsat_1_v5_gn_8_69520' => 'lsa', 'Manes.06G018600' => 'mes', 'Manes.11G103300' => 'mes', 'Manes.11G105600' => 'mes', 'Mapoly0056s0125' => 'mpo', 'Mapoly0087s0082' => 'mpo', 'Mapoly1495s0001' => 'mpo', 'MBI05_g28392_MAGBIO' => 'mbi', 'MBI07_g03077_MAGBIO' => 'mbi', 'MBI07_g03083_MAGBIO' => 'mbi', 'MCO03G199' => 'mco', 'MCO09G295' => 'mco', 'MCO16G120' => 'mco', 'MD00G1080400' => 'mdo', 'MD03G1229800' => 'mdo', 'MD05G1272100' => 'mdo', 'MD10G1276700' => 'mdo', 'MD11G1181200' => 'mdo', 'MD11G1250300' => 'mdo', 'MD12G1168900' => 'mdo', 'MD13G1073900' => 'mdo', 'MD16G1075100' => 'mdo', 'Medtr1g102335' => 'mtr', 'Medtr5g039440' => 'mtr', 'Medtr5g087490' => 'mtr', 'MELO3C013949.2' => 'cme', 'MELO3C015599.2' => 'cme', 'MELO3C015610.2' => 'cme', 'Migut.D00847' => 'egut', 'Migut.L01310' => 'egut', 'Migut.N02410' => 'egut', 'MSTRG.12417' => 'ama', 'MSTRG.21240' => 'ama', 'MSTRG.691' => 'ama', 'Nitab4.5_0000141g0270' => 'nta', 'Nitab4.5_0000428g0110' => 'nta', 'Nitab4.5_0000496g0060' => 'nta', 'Nitab4.5_0002300g0120' => 'nta', 'Nitab4.5_0002704g0060' => 'nta', 'Nitab4.5_0003566g0010' => 'nta', 'Nn1g00103' => 'nnu', 'Nn1g08035' => 'nnu', 'Nn1g09429' => 'nnu', 'Nn4g23114' => 'nnu', 'Nn7g37454' => 'nnu', 'Oeu013623.1' => 'oeu', 'Oeu027580.1' => 'oeu', 'Oeu027581.1' => 'oeu', 'Oeu050015.1' => 'oeu', 'Oeu051504.1' => 'oeu', 'Os01g0801700' => 'osa', 'Os03g0379400' => 'osa', 'Os04g0661600' => 'osa', 'Peaxi162Scf00007g01329' => 'pax', 'Peaxi162Scf00026g03113' => 'pax', 'Peaxi162Scf00050g02227' => 'pax', 'PGR119G0245' => 'pgr', 'PGR119G0480' => 'pgr', 'PGR142G2642' => 'pgr', 'PGSC0003DMG400005941' => 'stu', 'PGSC0003DMG400009618' => 'stu', 'Phvul.002G086800' => 'pvu', 'Phvul.008G209600' => 'pvu', 'Phvul.009G242000' => 'pvu', 'Potri.007G133900' => 'ptr', 'Potri.009G156400' => 'ptr', 'Potri.012G021000' => 'ptr', 'Potri.015G004400' => 'ptr', 'Potri.017G017901' => 'ptr', 'Pp3c14_4050' => 'ppa', 'Pp3c23_9160' => 'ppa', 'Pp3c24_4220' => 'ppa', 'PRCOL_00002568' => 'pco', 'Prupe.1G272100' => 'ppe', 'Prupe.3G107100' => 'ppe', 'Prupe.4G179500' => 'ppe', 'Prupe.6G153900' => 'ppe', 'Psat2g023160' => 'psa', 'Psat2g121440' => 'psa', 'Psat5g075120' => 'psa', 'PSO017G4006' => 'pso', 'PSO063G3912' => 'pso', 'PSO063G3947' => 'pso', 'PSO210G4030' => 'pso', 'PSO478G0282' => 'pso', 'PSO782G1531' => 'pso', 'PSO832G4559' => 'pso', 'QL01p007286' => 'qlo', 'QL01p007301' => 'qlo', 'QL03p060335' => 'qlo', 'QL03p064604' => 'qlo', 'QL10p006125' => 'qlo', 'RcHm_v2.0_Chr4g0440071' => 'rch', 'RcHm_v2.0_Chr5g0048741' => 'rch', 'RcHm_v2.0_Chr5g0048751' => 'rch', 'Rhsim01G0197500' => 'rsi', 'Rhsim12G0173100' => 'rsi', 'Sabra04G0059300' => 'sbr', 'Sabra07G0108700' => 'sbr', 'Sabra07G0121000' => 'sbr', 'Sabra09G0122500' => 'sbr', 'Sabra12G0003000' => 'sbr', 'Sabra15G0003000' => 'sbr', 'SalBow2G2991' => 'sbo', 'SalBow2G3361' => 'sbo', 'SalBow3G4459' => 'sbo', 'Sc01g0005570' => 'sci', 'Sc11g0001820' => 'sci', 'Sc21g0006570' => 'sci', 'Sc25g0002290' => 'sci', 'Sed0000960' => 'sed', 'Sed0001025' => 'sed', 'Sed0011075' => 'sed', 'SEGI_00915' => 'sgi', 'SEGI_02371' => 'sgi', 'SEGI_27969' => 'sgi', 'SEGI_28205' => 'sgi', 'SEGI_32063' => 'sgi', 'SEGI_32430' => 'sgi', 'SEGI_37017' => 'sgi', 'SGA_v2.0_scaffold154G37192' => 'sas', 'SGA_v2.0_scaffold16G07584' => 'sas', 'SGA_v2.0_scaffold1G00702' => 'sas', 'SGA_v2.0_scaffold25G11133' => 'sas', 'SGA_v2.0_scaffold28G11982' => 'sas', 'SGA_v2.0_scaffold4653G54517' => 'sas', 'SGA_v2.0_scaffold53G19414' => 'sas', 'SGA_v2.0_scaffold6G03251' => 'sas', 'SHI25334' => 'shi', 'SHI25335' => 'shi', 'SHI53821' => 'shi', 'SMO145G0256' => 'smo', 'SMO236G0017' => 'smo', 'SMO307G0084' => 'smo', 'Solyc01g009050.3' => 'sly', 'Solyc01g010570.4' => 'sly', 'Solyc05g056510.3' => 'sly', 'Sopen01g004540' => 'spe', 'Sopen01g006220' => 'spe', 'Sopen05g034910' => 'spe', 'Sp2g13960' => 'spa', 'Sp2g25470' => 'spa', 'Sp6g23530' => 'spa', 'TAR374G1328' => 'tar', 'TAR375G0698' => 'tar', 'TAR626G1975' => 'tar', 'TAR627G0849' => 'tar', 'TAR629G0383' => 'tar', 'TAR629G1744' => 'tar', 'THA.LOC104805152' => 'tha', 'THA.LOC104820518' => 'tha', 'THA.LOC104821398' => 'tha', 'Thecc.02G349900' => 'tca', 'Thecc.04G200200' => 'tca', 'Thecc.09G265000' => 'tca', 'Thhalv10000666m.g' => 'esa', 'Thhalv10004417m.g' => 'esa', 'Thhalv10004617m.g' => 'esa', 'Thhalv10010049m.g' => 'esa', 'Thhalv10012894m.g' => 'esa', 'Thhalv10026429m.g' => 'esa', 'TPR.G11462' => 'tpr', 'TPR.G11692' => 'tpr', 'TPR.G22712' => 'tpr', 'TPR.G24627' => 'tpr', 'TPR.G31851' => 'tpr', 'TPR.G37035' => 'tpr', 'TWI18G0113' => 'twi', 'TWI31G0930' => 'twi', 'TWI36G1000' => 'twi', 'TWI56G1164' => 'twi', 'unitig_22.g6913' => 'ugi', 'unitig_699.g19728' => 'ugi', 'unitig_8.g2986' => 'ugi', 'vmacro14297' => 'vma', 'vmacro16663' => 'vma', 'vmacro23059' => 'vma', 'VMungo0647G2429' => 'vmu', 'VMungo1215G3305' => 'vmu', 'VMungo1309G2065' => 'vmu', 'Zm00001eb067470' => 'zma', 'Zm00001eb150640' => 'zma', 'Zm00001eb369380' => 'zma', 'Zm00001eb392280' => 'zma', 'Zm00001eb432770' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001598' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001598' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001598' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001598' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001598', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '403', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p33170' => 'bna', 'A02p42210' => 'bna', 'A03p10390' => 'bna', 'A06p28990' => 'bna', 'Aa31LG11G1330' => 'aar', 'Aa31LG1G13740' => 'aar', 'Aa31LG2G7420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1323' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1064' => 'aag', 'Actinidia22467' => 'ach', 'Actinidia36797' => 'ach', 'Ah.08g222590' => 'amhyb', 'Ah.13g078030' => 'amhyb', 'AL5G12440' => 'aly', 'AL6G32560' => 'aly', 'AL8G39090' => 'aly', 'Aqoxy3G00689' => 'aox', 'Aqoxy3G02341' => 'aox', 'Aqoxy7G03836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4UW9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WK4WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TX8HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUM29L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS34PQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4M8GV' => 'arhy', 'AT2G02880' => 'ath', 'AT5G20990' => 'ath', 'AT5G62270' => 'ath', 'ATR0215G007' => 'atr', 'ATR0564G259' => 'atr', 'ATR0757G133' => 'atr', 'Atru.chr11.1498' => 'acertr', 'Atru.chr11.1822' => 'acertr', 'Atru.chr3.2751' => 'acertr', 'Atru.chr4.1342' => 'acertr', 'Atru.ctg664.11' => 'acertr', 'AUR62001598' => 'cqu', 'AUR62005754' => 'cqu', 'AUR62018568' => 'cqu', 'AUR62020182' => 'cqu', 'AUR62020850' => 'cqu', 'AUR62028804' => 'cqu', 'AUR62028805' => 'cqu', 'BcaB07g29787' => 'bca', 'BcaB07g30318' => 'bca', 'BcaB08g37328' => 'bca', 'BcaB08g37330' => 'bca', 'BcaC01g06921' => 'bca', 'BcaC03g17175' => 'bca', 'BcaC03g18140' => 'bca', 'BcaC04g19497' => 'bca', 'BcaNung06719' => 'bca', 'BcaNung07379' => 'bca', 'BolC2t11190H' => 'bol', 'BolC2t12266H' => 'bol', 'BolC3t13663H' => 'bol', 'BolC3t18718H' => 'bol', 'BraA02t08340Z' => 'bra', 'BraA02t09150Z' => 'bra', 'BraA03t10351Z' => 'bra', 'BraA06t25844Z' => 'bra', 'C02p50980' => 'bna', 'C02p62070' => 'bna', 'C03p11930' => 'bna', 'C03p64600' => 'bna', 'CAN.G1156.51' => 'can', 'CAN.G38.31' => 'can', 'CAN.G651.7' => 'can', 'CANSAT54G2824' => 'cansat', 'CANSAT64G1213' => 'cansat', 'CANSAT80G0504' => 'cansat', 'CARHR145320' => 'chi', 'CARHR191850' => 'chi', 'CARHR276050' => 'chi', 'Carub.0005s0177' => 'cru', 'Carub.0006s1931' => 'cru', 'Carub.0008s2296' => 'cru', 'Ca_01999_v3' => 'car', 'Ca_04769_v3' => 'car', 'Ca_06138_v3' => 'car', 'Ca_30734_v3' => 'car', 'CBR_g53784' => 'cbr', 'CBR_g8921' => 'cbr', 'Cc01_g06370' => 'ccan', 'Cc01_g07890' => 'ccan', 'Cc01_g10680' => 'ccan', 'Cc11_g13210' => 'ccan', 'CDE02G2133' => 'cde', 'CDE03G0379' => 'cde', 'CDE06G0993' => 'cde', 'CDE06G1865' => 'cde', 'CDE06G1877' => 'cde', 'CDE06G2705' => 'cde', 'Cfa015220' => 'cfa', 'Ciclev10014503m.g' => 'ccl', 'Ciclev10020578m.g' => 'ccl', 'Ciclev10032165m.g' => 'ccl', 'CiPaw.01G173400' => 'cil', 'CiPaw.02G103200' => 'cil', 'CiPaw.05G137200' => 'cil', 'CiPaw.13G127200' => 'cil', 'ClCG03G014280' => 'cla', 'ClCG03G014390' => 'cla', 'ClCG10G002790' => 'cla', 'COL.COLO4_20174' => 'col', 'COL.COLO4_22982' => 'col', 'COL.COLO4_25318' => 'col', 'Cpa.g.c40120' => 'cpa', 'Cpa.g.sc128.1' => 'cpa', 'Cpa.g.sc136.35' => 'cpa', 'Cpa.g.sc1763.1' => 'cpa', 'Cpa.g.sc34.224' => 'cpa', 'Cpa.g.sc48.118' => 'cpa', 'Cre06.g254600' => 'cre', 'Cre06.g282150' => 'cre', 'Cre10.g451400' => 'cre', 'CsaV3_1G041840' => 'csa', 'CsaV3_1G041940' => 'csa', 'CsaV3_3G002830' => 'csa', 'CSS0008753' => 'camsi', 'CSS0022192' => 'camsi', 'CSS0038227' => 'camsi', 'CSS0038856' => 'camsi', 'CSS0041589' => 'camsi', 'CSS0046041' => 'camsi', 'CSS0048937' => 'camsi', 'DCAR_000741' => 'dca', 'DCAR_013251' => 'dca', 'DCAR_021706' => 'dca', 'Dinv16629' => 'din', 'Dinv32128' => 'din', 'Dinv44166' => 'din', 'Duzib212G0742' => 'dzi', 'Duzib251G0726' => 'dzi', 'ECA234G4840' => 'eca', 'ECA236G0081' => 'eca', 'ECA247G1799' => 'eca', 'EL10Ac3g07464' => 'bvu', 'EL10Ac6g13181' => 'bvu', 'EL10Ac7g16239' => 'bvu', 'Eucgr.G02513' => 'egr', 'Eucgr.H00336' => 'egr', 'Eucgr.J00614' => 'egr', 'FAN07G2650' => 'fan', 'FAN11G0362' => 'fan', 'FAN11G2542' => 'fan', 'FAN12G4270' => 'fan', 'FAN16G3208' => 'fan', 'FAN17G2100' => 'fan', 'FAN21G0325' => 'fan', 'FAN25G1601' => 'fan', 'FAN25G3483' => 'fan', 'FvH4_3g26250' => 'fve', 'FvH4_3g26260' => 'fve', 'FvH4_4g31560' => 'fve', 'Glyma.01G045300' => 'gma', 'Glyma.02G105700' => 'gma', 'Glyma.02G272700' => 'gma', 'Glyma.09G051800' => 'gma', 'Glyma.14G045450' => 'gma', 'Glyma.15G158100' => 'gma', 'Glyma.16G121250' => 'gma', 'Gohir.A02G020800' => 'ghi', 'Gohir.A03G104500' => 'ghi', 'Gohir.A05G076000' => 'ghi', 'Gohir.D02G024800' => 'ghi', 'Gohir.D02G129600' => 'ghi', 'Gohir.D02G129700' => 'ghi', 'Gohir.D03G140800' => 'ghi', 'Gohir.D03G140900' => 'ghi', 'Gohir.D05G078700' => 'ghi', 'Gohir.D05G085901' => 'ghi', 'Gohir.D11G326400' => 'ghi', 'Gohir.D12G167300' => 'ghi', 'Gorai.003G147700' => 'gra', 'Gorai.005G030700' => 'gra', 'Gorai.005G145600' => 'gra', 'Gorai.008G180200' => 'gra', 'Gorai.009G080100' => 'gra', 'GSVIVG01023007001' => 'vvi', 'GSVIVG01037501001' => 'vvi', 'GSVIVG01038094001' => 'vvi', 'HanXRQChr06g0180651' => 'han', 'HanXRQChr07g0205981' => 'han', 'HanXRQChr12g0371061' => 'han', 'Haze_00082' => 'cav', 'Haze_01397' => 'cav', 'Haze_12029' => 'cav', 'Haze_23633' => 'cav', 'Hma1.2p1_0218F.1_g092460' => 'hma', 'HPP92_013448' => 'vpl', 'HPP92_013468' => 'vpl', 'HPP92_013469' => 'vpl', 'HPP92_015460' => 'vpl', 'HPP92_016856' => 'vpl', 'HPP92_016914' => 'vpl', 'Hund10980' => 'sun', 'Hund14885' => 'sun', 'Hund20974' => 'sun', 'Hund25254' => 'sun', 'Lalb_Chr10g0098161' => 'lal', 'Lalb_Chr10g0105801' => 'lal', 'Lalb_Chr18g0052141' => 'lal', 'Lj2A895G19' => 'lonja', 'Lj2A895T22' => 'lonja', 'Lj2C893G11' => 'lonja', 'Lj2C893T10' => 'lonja', 'Lj2g0010789' => 'lja', 'Lj3C1039T11' => 'lonja', 'Lj5A679G28' => 'lonja', 'Lj6g0023615' => 'lja', 'Lj8A728T10' => 'lonja', 'LjContig00564g0017485' => 'lja', 'Lsat_1_v5_gn_2_37520' => 'lsa', 'Lsat_1_v5_gn_8_112440' => 'lsa', 'Lsat_1_v5_gn_8_4521' => 'lsa', 'Lsat_1_v5_gn_8_69520' => 'lsa', 'Manes.06G018600' => 'mes', 'Manes.11G103300' => 'mes', 'Manes.11G105600' => 'mes', 'Mapoly0056s0125' => 'mpo', 'Mapoly0087s0082' => 'mpo', 'Mapoly1495s0001' => 'mpo', 'MBI05_g28392_MAGBIO' => 'mbi', 'MBI07_g03077_MAGBIO' => 'mbi', 'MBI07_g03083_MAGBIO' => 'mbi', 'MCO03G199' => 'mco', 'MCO09G295' => 'mco', 'MCO16G120' => 'mco', 'MD00G1080400' => 'mdo', 'MD03G1229800' => 'mdo', 'MD05G1272100' => 'mdo', 'MD10G1276700' => 'mdo', 'MD11G1181200' => 'mdo', 'MD11G1250300' => 'mdo', 'MD12G1168900' => 'mdo', 'MD13G1073900' => 'mdo', 'MD16G1075100' => 'mdo', 'Medtr1g102335' => 'mtr', 'Medtr5g039440' => 'mtr', 'Medtr5g087490' => 'mtr', 'MELO3C013949.2' => 'cme', 'MELO3C015599.2' => 'cme', 'MELO3C015610.2' => 'cme', 'Migut.D00847' => 'egut', 'Migut.L01310' => 'egut', 'Migut.N02410' => 'egut', 'MSTRG.12417' => 'ama', 'MSTRG.21240' => 'ama', 'MSTRG.691' => 'ama', 'Nitab4.5_0000141g0270' => 'nta', 'Nitab4.5_0000428g0110' => 'nta', 'Nitab4.5_0000496g0060' => 'nta', 'Nitab4.5_0002300g0120' => 'nta', 'Nitab4.5_0002704g0060' => 'nta', 'Nitab4.5_0003566g0010' => 'nta', 'Nn1g00103' => 'nnu', 'Nn1g08035' => 'nnu', 'Nn1g09429' => 'nnu', 'Nn4g23114' => 'nnu', 'Nn7g37454' => 'nnu', 'Oeu013623.1' => 'oeu', 'Oeu027580.1' => 'oeu', 'Oeu027581.1' => 'oeu', 'Oeu050015.1' => 'oeu', 'Oeu051504.1' => 'oeu', 'Os01g0801700' => 'osa', 'Os03g0379400' => 'osa', 'Os04g0661600' => 'osa', 'Peaxi162Scf00007g01329' => 'pax', 'Peaxi162Scf00026g03113' => 'pax', 'Peaxi162Scf00050g02227' => 'pax', 'PGR119G0245' => 'pgr', 'PGR119G0480' => 'pgr', 'PGR142G2642' => 'pgr', 'PGSC0003DMG400005941' => 'stu', 'PGSC0003DMG400009618' => 'stu', 'Phvul.002G086800' => 'pvu', 'Phvul.008G209600' => 'pvu', 'Phvul.009G242000' => 'pvu', 'Potri.007G133900' => 'ptr', 'Potri.009G156400' => 'ptr', 'Potri.012G021000' => 'ptr', 'Potri.015G004400' => 'ptr', 'Potri.017G017901' => 'ptr', 'Pp3c14_4050' => 'ppa', 'Pp3c23_9160' => 'ppa', 'Pp3c24_4220' => 'ppa', 'PRCOL_00002568' => 'pco', 'Prupe.1G272100' => 'ppe', 'Prupe.3G107100' => 'ppe', 'Prupe.4G179500' => 'ppe', 'Prupe.6G153900' => 'ppe', 'Psat2g023160' => 'psa', 'Psat2g121440' => 'psa', 'Psat5g075120' => 'psa', 'PSO017G4006' => 'pso', 'PSO063G3912' => 'pso', 'PSO063G3947' => 'pso', 'PSO210G4030' => 'pso', 'PSO478G0282' => 'pso', 'PSO782G1531' => 'pso', 'PSO832G4559' => 'pso', 'QL01p007286' => 'qlo', 'QL01p007301' => 'qlo', 'QL03p060335' => 'qlo', 'QL03p064604' => 'qlo', 'QL10p006125' => 'qlo', 'RcHm_v2.0_Chr4g0440071' => 'rch', 'RcHm_v2.0_Chr5g0048741' => 'rch', 'RcHm_v2.0_Chr5g0048751' => 'rch', 'Rhsim01G0197500' => 'rsi', 'Rhsim12G0173100' => 'rsi', 'Sabra04G0059300' => 'sbr', 'Sabra07G0108700' => 'sbr', 'Sabra07G0121000' => 'sbr', 'Sabra09G0122500' => 'sbr', 'Sabra12G0003000' => 'sbr', 'Sabra15G0003000' => 'sbr', 'SalBow2G2991' => 'sbo', 'SalBow2G3361' => 'sbo', 'SalBow3G4459' => 'sbo', 'Sc01g0005570' => 'sci', 'Sc11g0001820' => 'sci', 'Sc21g0006570' => 'sci', 'Sc25g0002290' => 'sci', 'Sed0000960' => 'sed', 'Sed0001025' => 'sed', 'Sed0011075' => 'sed', 'SEGI_00915' => 'sgi', 'SEGI_02371' => 'sgi', 'SEGI_27969' => 'sgi', 'SEGI_28205' => 'sgi', 'SEGI_32063' => 'sgi', 'SEGI_32430' => 'sgi', 'SEGI_37017' => 'sgi', 'SGA_v2.0_scaffold154G37192' => 'sas', 'SGA_v2.0_scaffold16G07584' => 'sas', 'SGA_v2.0_scaffold1G00702' => 'sas', 'SGA_v2.0_scaffold25G11133' => 'sas', 'SGA_v2.0_scaffold28G11982' => 'sas', 'SGA_v2.0_scaffold4653G54517' => 'sas', 'SGA_v2.0_scaffold53G19414' => 'sas', 'SGA_v2.0_scaffold6G03251' => 'sas', 'SHI25334' => 'shi', 'SHI25335' => 'shi', 'SHI53821' => 'shi', 'SMO145G0256' => 'smo', 'SMO236G0017' => 'smo', 'SMO307G0084' => 'smo', 'Solyc01g009050.3' => 'sly', 'Solyc01g010570.4' => 'sly', 'Solyc05g056510.3' => 'sly', 'Sopen01g004540' => 'spe', 'Sopen01g006220' => 'spe', 'Sopen05g034910' => 'spe', 'Sp2g13960' => 'spa', 'Sp2g25470' => 'spa', 'Sp6g23530' => 'spa', 'TAR374G1328' => 'tar', 'TAR375G0698' => 'tar', 'TAR626G1975' => 'tar', 'TAR627G0849' => 'tar', 'TAR629G0383' => 'tar', 'TAR629G1744' => 'tar', 'THA.LOC104805152' => 'tha', 'THA.LOC104820518' => 'tha', 'THA.LOC104821398' => 'tha', 'Thecc.02G349900' => 'tca', 'Thecc.04G200200' => 'tca', 'Thecc.09G265000' => 'tca', 'Thhalv10000666m.g' => 'esa', 'Thhalv10004417m.g' => 'esa', 'Thhalv10004617m.g' => 'esa', 'Thhalv10010049m.g' => 'esa', 'Thhalv10012894m.g' => 'esa', 'Thhalv10026429m.g' => 'esa', 'TPR.G11462' => 'tpr', 'TPR.G11692' => 'tpr', 'TPR.G22712' => 'tpr', 'TPR.G24627' => 'tpr', 'TPR.G31851' => 'tpr', 'TPR.G37035' => 'tpr', 'TWI18G0113' => 'twi', 'TWI31G0930' => 'twi', 'TWI36G1000' => 'twi', 'TWI56G1164' => 'twi', 'unitig_22.g6913' => 'ugi', 'unitig_699.g19728' => 'ugi', 'unitig_8.g2986' => 'ugi', 'vmacro14297' => 'vma', 'vmacro16663' => 'vma', 'vmacro23059' => 'vma', 'VMungo0647G2429' => 'vmu', 'VMungo1215G3305' => 'vmu', 'VMungo1309G2065' => 'vmu', 'Zm00001eb067470' => 'zma', 'Zm00001eb150640' => 'zma', 'Zm00001eb369380' => 'zma', 'Zm00001eb392280' => 'zma', 'Zm00001eb432770' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001598', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001598' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001598', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '403', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001598' ) ), 'genes' => array( 'A02p33170' => 'bna', 'A02p42210' => 'bna', 'A03p10390' => 'bna', 'A06p28990' => 'bna', 'Aa31LG11G1330' => 'aar', 'Aa31LG1G13740' => 'aar', 'Aa31LG2G7420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1323' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1064' => 'aag', 'Actinidia22467' => 'ach', 'Actinidia36797' => 'ach', 'Ah.08g222590' => 'amhyb', 'Ah.13g078030' => 'amhyb', 'AL5G12440' => 'aly', 'AL6G32560' => 'aly', 'AL8G39090' => 'aly', 'Aqoxy3G00689' => 'aox', 'Aqoxy3G02341' => 'aox', 'Aqoxy7G03836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4UW9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WK4WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TX8HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUM29L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS34PQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4M8GV' => 'arhy', 'AT2G02880' => 'ath', 'AT5G20990' => 'ath', 'AT5G62270' => 'ath', 'ATR0215G007' => 'atr', 'ATR0564G259' => 'atr', 'ATR0757G133' => 'atr', 'Atru.chr11.1498' => 'acertr', 'Atru.chr11.1822' => 'acertr', 'Atru.chr3.2751' => 'acertr', 'Atru.chr4.1342' => 'acertr', 'Atru.ctg664.11' => 'acertr', 'AUR62001598' => 'cqu', 'AUR62005754' => 'cqu', 'AUR62018568' => 'cqu', 'AUR62020182' => 'cqu', 'AUR62020850' => 'cqu', 'AUR62028804' => 'cqu', 'AUR62028805' => 'cqu', 'BcaB07g29787' => 'bca', 'BcaB07g30318' => 'bca', 'BcaB08g37328' => 'bca', 'BcaB08g37330' => 'bca', 'BcaC01g06921' => 'bca', 'BcaC03g17175' => 'bca', 'BcaC03g18140' => 'bca', 'BcaC04g19497' => 'bca', 'BcaNung06719' => 'bca', 'BcaNung07379' => 'bca', 'BolC2t11190H' => 'bol', 'BolC2t12266H' => 'bol', 'BolC3t13663H' => 'bol', 'BolC3t18718H' => 'bol', 'BraA02t08340Z' => 'bra', 'BraA02t09150Z' => 'bra', 'BraA03t10351Z' => 'bra', 'BraA06t25844Z' => 'bra', 'C02p50980' => 'bna', 'C02p62070' => 'bna', 'C03p11930' => 'bna', 'C03p64600' => 'bna', 'CAN.G1156.51' => 'can', 'CAN.G38.31' => 'can', 'CAN.G651.7' => 'can', 'CANSAT54G2824' => 'cansat', 'CANSAT64G1213' => 'cansat', 'CANSAT80G0504' => 'cansat', 'CARHR145320' => 'chi', 'CARHR191850' => 'chi', 'CARHR276050' => 'chi', 'Carub.0005s0177' => 'cru', 'Carub.0006s1931' => 'cru', 'Carub.0008s2296' => 'cru', 'Ca_01999_v3' => 'car', 'Ca_04769_v3' => 'car', 'Ca_06138_v3' => 'car', 'Ca_30734_v3' => 'car', 'CBR_g53784' => 'cbr', 'CBR_g8921' => 'cbr', 'Cc01_g06370' => 'ccan', 'Cc01_g07890' => 'ccan', 'Cc01_g10680' => 'ccan', 'Cc11_g13210' => 'ccan', 'CDE02G2133' => 'cde', 'CDE03G0379' => 'cde', 'CDE06G0993' => 'cde', 'CDE06G1865' => 'cde', 'CDE06G1877' => 'cde', 'CDE06G2705' => 'cde', 'Cfa015220' => 'cfa', 'Ciclev10014503m.g' => 'ccl', 'Ciclev10020578m.g' => 'ccl', 'Ciclev10032165m.g' => 'ccl', 'CiPaw.01G173400' => 'cil', 'CiPaw.02G103200' => 'cil', 'CiPaw.05G137200' => 'cil', 'CiPaw.13G127200' => 'cil', 'ClCG03G014280' => 'cla', 'ClCG03G014390' => 'cla', 'ClCG10G002790' => 'cla', 'COL.COLO4_20174' => 'col', 'COL.COLO4_22982' => 'col', 'COL.COLO4_25318' => 'col', 'Cpa.g.c40120' => 'cpa', 'Cpa.g.sc128.1' => 'cpa', 'Cpa.g.sc136.35' => 'cpa', 'Cpa.g.sc1763.1' => 'cpa', 'Cpa.g.sc34.224' => 'cpa', 'Cpa.g.sc48.118' => 'cpa', 'Cre06.g254600' => 'cre', 'Cre06.g282150' => 'cre', 'Cre10.g451400' => 'cre', 'CsaV3_1G041840' => 'csa', 'CsaV3_1G041940' => 'csa', 'CsaV3_3G002830' => 'csa', 'CSS0008753' => 'camsi', 'CSS0022192' => 'camsi', 'CSS0038227' => 'camsi', 'CSS0038856' => 'camsi', 'CSS0041589' => 'camsi', 'CSS0046041' => 'camsi', 'CSS0048937' => 'camsi', 'DCAR_000741' => 'dca', 'DCAR_013251' => 'dca', 'DCAR_021706' => 'dca', 'Dinv16629' => 'din', 'Dinv32128' => 'din', 'Dinv44166' => 'din', 'Duzib212G0742' => 'dzi', 'Duzib251G0726' => 'dzi', 'ECA234G4840' => 'eca', 'ECA236G0081' => 'eca', 'ECA247G1799' => 'eca', 'EL10Ac3g07464' => 'bvu', 'EL10Ac6g13181' => 'bvu', 'EL10Ac7g16239' => 'bvu', 'Eucgr.G02513' => 'egr', 'Eucgr.H00336' => 'egr', 'Eucgr.J00614' => 'egr', 'FAN07G2650' => 'fan', 'FAN11G0362' => 'fan', 'FAN11G2542' => 'fan', 'FAN12G4270' => 'fan', 'FAN16G3208' => 'fan', 'FAN17G2100' => 'fan', 'FAN21G0325' => 'fan', 'FAN25G1601' => 'fan', 'FAN25G3483' => 'fan', 'FvH4_3g26250' => 'fve', 'FvH4_3g26260' => 'fve', 'FvH4_4g31560' => 'fve', 'Glyma.01G045300' => 'gma', 'Glyma.02G105700' => 'gma', 'Glyma.02G272700' => 'gma', 'Glyma.09G051800' => 'gma', 'Glyma.14G045450' => 'gma', 'Glyma.15G158100' => 'gma', 'Glyma.16G121250' => 'gma', 'Gohir.A02G020800' => 'ghi', 'Gohir.A03G104500' => 'ghi', 'Gohir.A05G076000' => 'ghi', 'Gohir.D02G024800' => 'ghi', 'Gohir.D02G129600' => 'ghi', 'Gohir.D02G129700' => 'ghi', 'Gohir.D03G140800' => 'ghi', 'Gohir.D03G140900' => 'ghi', 'Gohir.D05G078700' => 'ghi', 'Gohir.D05G085901' => 'ghi', 'Gohir.D11G326400' => 'ghi', 'Gohir.D12G167300' => 'ghi', 'Gorai.003G147700' => 'gra', 'Gorai.005G030700' => 'gra', 'Gorai.005G145600' => 'gra', 'Gorai.008G180200' => 'gra', 'Gorai.009G080100' => 'gra', 'GSVIVG01023007001' => 'vvi', 'GSVIVG01037501001' => 'vvi', 'GSVIVG01038094001' => 'vvi', 'HanXRQChr06g0180651' => 'han', 'HanXRQChr07g0205981' => 'han', 'HanXRQChr12g0371061' => 'han', 'Haze_00082' => 'cav', 'Haze_01397' => 'cav', 'Haze_12029' => 'cav', 'Haze_23633' => 'cav', 'Hma1.2p1_0218F.1_g092460' => 'hma', 'HPP92_013448' => 'vpl', 'HPP92_013468' => 'vpl', 'HPP92_013469' => 'vpl', 'HPP92_015460' => 'vpl', 'HPP92_016856' => 'vpl', 'HPP92_016914' => 'vpl', 'Hund10980' => 'sun', 'Hund14885' => 'sun', 'Hund20974' => 'sun', 'Hund25254' => 'sun', 'Lalb_Chr10g0098161' => 'lal', 'Lalb_Chr10g0105801' => 'lal', 'Lalb_Chr18g0052141' => 'lal', 'Lj2A895G19' => 'lonja', 'Lj2A895T22' => 'lonja', 'Lj2C893G11' => 'lonja', 'Lj2C893T10' => 'lonja', 'Lj2g0010789' => 'lja', 'Lj3C1039T11' => 'lonja', 'Lj5A679G28' => 'lonja', 'Lj6g0023615' => 'lja', 'Lj8A728T10' => 'lonja', 'LjContig00564g0017485' => 'lja', 'Lsat_1_v5_gn_2_37520' => 'lsa', 'Lsat_1_v5_gn_8_112440' => 'lsa', 'Lsat_1_v5_gn_8_4521' => 'lsa', 'Lsat_1_v5_gn_8_69520' => 'lsa', 'Manes.06G018600' => 'mes', 'Manes.11G103300' => 'mes', 'Manes.11G105600' => 'mes', 'Mapoly0056s0125' => 'mpo', 'Mapoly0087s0082' => 'mpo', 'Mapoly1495s0001' => 'mpo', 'MBI05_g28392_MAGBIO' => 'mbi', 'MBI07_g03077_MAGBIO' => 'mbi', 'MBI07_g03083_MAGBIO' => 'mbi', 'MCO03G199' => 'mco', 'MCO09G295' => 'mco', 'MCO16G120' => 'mco', 'MD00G1080400' => 'mdo', 'MD03G1229800' => 'mdo', 'MD05G1272100' => 'mdo', 'MD10G1276700' => 'mdo', 'MD11G1181200' => 'mdo', 'MD11G1250300' => 'mdo', 'MD12G1168900' => 'mdo', 'MD13G1073900' => 'mdo', 'MD16G1075100' => 'mdo', 'Medtr1g102335' => 'mtr', 'Medtr5g039440' => 'mtr', 'Medtr5g087490' => 'mtr', 'MELO3C013949.2' => 'cme', 'MELO3C015599.2' => 'cme', 'MELO3C015610.2' => 'cme', 'Migut.D00847' => 'egut', 'Migut.L01310' => 'egut', 'Migut.N02410' => 'egut', 'MSTRG.12417' => 'ama', 'MSTRG.21240' => 'ama', 'MSTRG.691' => 'ama', 'Nitab4.5_0000141g0270' => 'nta', 'Nitab4.5_0000428g0110' => 'nta', 'Nitab4.5_0000496g0060' => 'nta', 'Nitab4.5_0002300g0120' => 'nta', 'Nitab4.5_0002704g0060' => 'nta', 'Nitab4.5_0003566g0010' => 'nta', 'Nn1g00103' => 'nnu', 'Nn1g08035' => 'nnu', 'Nn1g09429' => 'nnu', 'Nn4g23114' => 'nnu', 'Nn7g37454' => 'nnu', 'Oeu013623.1' => 'oeu', 'Oeu027580.1' => 'oeu', 'Oeu027581.1' => 'oeu', 'Oeu050015.1' => 'oeu', 'Oeu051504.1' => 'oeu', 'Os01g0801700' => 'osa', 'Os03g0379400' => 'osa', 'Os04g0661600' => 'osa', 'Peaxi162Scf00007g01329' => 'pax', 'Peaxi162Scf00026g03113' => 'pax', 'Peaxi162Scf00050g02227' => 'pax', 'PGR119G0245' => 'pgr', 'PGR119G0480' => 'pgr', 'PGR142G2642' => 'pgr', 'PGSC0003DMG400005941' => 'stu', 'PGSC0003DMG400009618' => 'stu', 'Phvul.002G086800' => 'pvu', 'Phvul.008G209600' => 'pvu', 'Phvul.009G242000' => 'pvu', 'Potri.007G133900' => 'ptr', 'Potri.009G156400' => 'ptr', 'Potri.012G021000' => 'ptr', 'Potri.015G004400' => 'ptr', 'Potri.017G017901' => 'ptr', 'Pp3c14_4050' => 'ppa', 'Pp3c23_9160' => 'ppa', 'Pp3c24_4220' => 'ppa', 'PRCOL_00002568' => 'pco', 'Prupe.1G272100' => 'ppe', 'Prupe.3G107100' => 'ppe', 'Prupe.4G179500' => 'ppe', 'Prupe.6G153900' => 'ppe', 'Psat2g023160' => 'psa', 'Psat2g121440' => 'psa', 'Psat5g075120' => 'psa', 'PSO017G4006' => 'pso', 'PSO063G3912' => 'pso', 'PSO063G3947' => 'pso', 'PSO210G4030' => 'pso', 'PSO478G0282' => 'pso', 'PSO782G1531' => 'pso', 'PSO832G4559' => 'pso', 'QL01p007286' => 'qlo', 'QL01p007301' => 'qlo', 'QL03p060335' => 'qlo', 'QL03p064604' => 'qlo', 'QL10p006125' => 'qlo', 'RcHm_v2.0_Chr4g0440071' => 'rch', 'RcHm_v2.0_Chr5g0048741' => 'rch', 'RcHm_v2.0_Chr5g0048751' => 'rch', 'Rhsim01G0197500' => 'rsi', 'Rhsim12G0173100' => 'rsi', 'Sabra04G0059300' => 'sbr', 'Sabra07G0108700' => 'sbr', 'Sabra07G0121000' => 'sbr', 'Sabra09G0122500' => 'sbr', 'Sabra12G0003000' => 'sbr', 'Sabra15G0003000' => 'sbr', 'SalBow2G2991' => 'sbo', 'SalBow2G3361' => 'sbo', 'SalBow3G4459' => 'sbo', 'Sc01g0005570' => 'sci', 'Sc11g0001820' => 'sci', 'Sc21g0006570' => 'sci', 'Sc25g0002290' => 'sci', 'Sed0000960' => 'sed', 'Sed0001025' => 'sed', 'Sed0011075' => 'sed', 'SEGI_00915' => 'sgi', 'SEGI_02371' => 'sgi', 'SEGI_27969' => 'sgi', 'SEGI_28205' => 'sgi', 'SEGI_32063' => 'sgi', 'SEGI_32430' => 'sgi', 'SEGI_37017' => 'sgi', 'SGA_v2.0_scaffold154G37192' => 'sas', 'SGA_v2.0_scaffold16G07584' => 'sas', 'SGA_v2.0_scaffold1G00702' => 'sas', 'SGA_v2.0_scaffold25G11133' => 'sas', 'SGA_v2.0_scaffold28G11982' => 'sas', 'SGA_v2.0_scaffold4653G54517' => 'sas', 'SGA_v2.0_scaffold53G19414' => 'sas', 'SGA_v2.0_scaffold6G03251' => 'sas', 'SHI25334' => 'shi', 'SHI25335' => 'shi', 'SHI53821' => 'shi', 'SMO145G0256' => 'smo', 'SMO236G0017' => 'smo', 'SMO307G0084' => 'smo', 'Solyc01g009050.3' => 'sly', 'Solyc01g010570.4' => 'sly', 'Solyc05g056510.3' => 'sly', 'Sopen01g004540' => 'spe', 'Sopen01g006220' => 'spe', 'Sopen05g034910' => 'spe', 'Sp2g13960' => 'spa', 'Sp2g25470' => 'spa', 'Sp6g23530' => 'spa', 'TAR374G1328' => 'tar', 'TAR375G0698' => 'tar', 'TAR626G1975' => 'tar', 'TAR627G0849' => 'tar', 'TAR629G0383' => 'tar', 'TAR629G1744' => 'tar', 'THA.LOC104805152' => 'tha', 'THA.LOC104820518' => 'tha', 'THA.LOC104821398' => 'tha', 'Thecc.02G349900' => 'tca', 'Thecc.04G200200' => 'tca', 'Thecc.09G265000' => 'tca', 'Thhalv10000666m.g' => 'esa', 'Thhalv10004417m.g' => 'esa', 'Thhalv10004617m.g' => 'esa', 'Thhalv10010049m.g' => 'esa', 'Thhalv10012894m.g' => 'esa', 'Thhalv10026429m.g' => 'esa', 'TPR.G11462' => 'tpr', 'TPR.G11692' => 'tpr', 'TPR.G22712' => 'tpr', 'TPR.G24627' => 'tpr', 'TPR.G31851' => 'tpr', 'TPR.G37035' => 'tpr', 'TWI18G0113' => 'twi', 'TWI31G0930' => 'twi', 'TWI36G1000' => 'twi', 'TWI56G1164' => 'twi', 'unitig_22.g6913' => 'ugi', 'unitig_699.g19728' => 'ugi', 'unitig_8.g2986' => 'ugi', 'vmacro14297' => 'vma', 'vmacro16663' => 'vma', 'vmacro23059' => 'vma', 'VMungo0647G2429' => 'vmu', 'VMungo1215G3305' => 'vmu', 'VMungo1309G2065' => 'vmu', 'Zm00001eb067470' => 'zma', 'Zm00001eb150640' => 'zma', 'Zm00001eb369380' => 'zma', 'Zm00001eb392280' => 'zma', 'Zm00001eb432770' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001598' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001598' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001598' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001598' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151