Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p33170 Brassica napus
A02p42210 Brassica napus
A03p10390 Brassica napus
A06p28990 Brassica napus
Aa31LG11G1330 Aethionema arabicum
Aa31LG1G13740 Aethionema arabicum
Aa31LG2G7420 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1064 Anthoceros agrestis
Actinidia22467 Actinidia chinensis
Actinidia36797 Actinidia chinensis
Ah.08g222590 Amaranthus hybridus
Ah.13g078030 Amaranthus hybridus
AL5G12440 Arabidopsis lyrata
AL6G32560 Arabidopsis lyrata
AL8G39090 Arabidopsis lyrata
Aqoxy3G00689 Aquilegia oxysepala
Aqoxy3G02341 Aquilegia oxysepala
Aqoxy7G03836 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5WK4WG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9TX8HM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BUM29L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F1G1DC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z4M8GV Arachis hypogaea
AT2G02880 Arabidopsis thaliana
AT5G20990 Arabidopsis thaliana
AT5G62270 Arabidopsis thaliana
ATR0215G007 Amborella trichopoda
ATR0564G259 Amborella trichopoda
ATR0757G133 Amborella trichopoda
Atru.chr11.1498 Acer truncatum
Atru.chr11.1822 Acer truncatum
Atru.chr3.2751 Acer truncatum
Atru.chr4.1342 Acer truncatum
Atru.ctg664.11 Acer truncatum
AUR62001598 Chenopodium quinoa
AUR62005754 Chenopodium quinoa
AUR62018568 Chenopodium quinoa
AUR62020182 Chenopodium quinoa
AUR62020850 Chenopodium quinoa
AUR62028804 Chenopodium quinoa
AUR62028805 Chenopodium quinoa
BcaB07g29787 Brassica carinata
BcaB07g30318 Brassica carinata
BcaB08g37328 Brassica carinata
BcaB08g37330 Brassica carinata
BcaC01g06921 Brassica carinata
BcaC03g17175 Brassica carinata
BcaC03g18140 Brassica carinata
BcaC04g19497 Brassica carinata
BcaNung06719 Brassica carinata
BcaNung07379 Brassica carinata
BolC2t11190H Brassica oleracea
BolC2t12266H Brassica oleracea
BolC3t13663H Brassica oleracea
BolC3t18718H Brassica oleracea
BraA02t08340Z Brassica rapa
BraA02t09150Z Brassica rapa
BraA03t10351Z Brassica rapa
BraA06t25844Z Brassica rapa
C02p50980 Brassica napus
C02p62070 Brassica napus
C03p11930 Brassica napus
C03p64600 Brassica napus
CAN.G1156.51 Capsicum annuum
CAN.G38.31 Capsicum annuum
CAN.G651.7 Capsicum annuum
CANSAT54G2824 Cannabis sativa
CANSAT64G1213 Cannabis sativa
CANSAT80G0504 Cannabis sativa
CARHR145320 Cardamine hirsuta
CARHR191850 Cardamine hirsuta
CARHR276050 Cardamine hirsuta
Carub.0005s0177 Capsella rubella
Carub.0006s1931 Capsella rubella
Carub.0008s2296 Capsella rubella
Ca_01999_v3 Cicer arietinum L.
Ca_04769_v3 Cicer arietinum L.
Ca_06138_v3 Cicer arietinum L.
Ca_30734_v3 Cicer arietinum L.
CBR_g53784 Chara braunii
CBR_g8921 Chara braunii
Cc01_g06370 Coffea canephora
Cc01_g07890 Coffea canephora
Cc01_g10680 Coffea canephora
Cc11_g13210 Coffea canephora
CDE02G2133 Ceratophyllum demersum
CDE03G0379 Ceratophyllum demersum
CDE06G0993 Ceratophyllum demersum
CDE06G1865 Ceratophyllum demersum
CDE06G1877 Ceratophyllum demersum
CDE06G2705 Ceratophyllum demersum
Cfa015220 Carpinus fangiana
Ciclev10014503m.g Citrus clementina
Ciclev10020578m.g Citrus clementina
Ciclev10032165m.g Citrus clementina
CiPaw.01G173400 Carya illinoinensis
CiPaw.02G103200 Carya illinoinensis
CiPaw.05G137200 Carya illinoinensis
CiPaw.13G127200 Carya illinoinensis
ClCG03G014280 Citrullus lanatus
ClCG03G014390 Citrullus lanatus
ClCG10G002790 Citrullus lanatus
COL.COLO4_20174 Corchorus olitorius
COL.COLO4_22982 Corchorus olitorius
COL.COLO4_25318 Corchorus olitorius
Cpa.g.c40120 Carica papaya
Cpa.g.sc128.1 Carica papaya
Cpa.g.sc136.35 Carica papaya
Cpa.g.sc1763.1 Carica papaya
Cpa.g.sc34.224 Carica papaya
Cpa.g.sc48.118 Carica papaya
Cre06.g254600 Chlamydomonas reinhardtii
Cre06.g282150 Chlamydomonas reinhardtii
Cre10.g451400 Chlamydomonas reinhardtii
CsaV3_1G041840 Cucumis sativus L.
CsaV3_1G041940 Cucumis sativus L.
CsaV3_3G002830 Cucumis sativus L.
CSS0008753 Camellia sinensis var. sinensis
CSS0022192 Camellia sinensis var. sinensis
CSS0038227 Camellia sinensis var. sinensis
CSS0038856 Camellia sinensis var. sinensis
CSS0041589 Camellia sinensis var. sinensis
CSS0046041 Camellia sinensis var. sinensis
CSS0048937 Camellia sinensis var. sinensis
DCAR_000741 Daucus carota
DCAR_013251 Daucus carota
DCAR_021706 Daucus carota
Dinv16629 Davidia involucrata
Dinv32128 Davidia involucrata
Dinv44166 Davidia involucrata
Duzib212G0742 Durio zibethinus
Duzib251G0726 Durio zibethinus
ECA234G4840 Erigeron canadensis
ECA236G0081 Erigeron canadensis
ECA247G1799 Erigeron canadensis
EL10Ac3g07464 Beta vulgaris
EL10Ac6g13181 Beta vulgaris
EL10Ac7g16239 Beta vulgaris
Eucgr.G02513 Eucalyptus grandis
Eucgr.H00336 Eucalyptus grandis
Eucgr.J00614 Eucalyptus grandis
FAN07G2650 Fragaria x ananassa
FAN11G0362 Fragaria x ananassa
FAN11G2542 Fragaria x ananassa
FAN12G4270 Fragaria x ananassa
FAN16G3208 Fragaria x ananassa
FAN17G2100 Fragaria x ananassa
FAN21G0325 Fragaria x ananassa
FAN25G1601 Fragaria x ananassa
FAN25G3483 Fragaria x ananassa
FvH4_3g26250 Fragaria vesca
FvH4_3g26260 Fragaria vesca
FvH4_4g31560 Fragaria vesca
Glyma.01G045300 Glycine max
Glyma.02G105700 Glycine max
Glyma.02G272700 Glycine max
Glyma.09G051800 Glycine max
Glyma.14G045450 Glycine max
Glyma.15G158100 Glycine max
Glyma.16G121250 Glycine max
Gohir.A02G020800 Gossypium hirsutum
Gohir.A03G104500 Gossypium hirsutum
Gohir.A05G076000 Gossypium hirsutum
Gohir.D02G024800 Gossypium hirsutum
Gohir.D02G129600 Gossypium hirsutum
Gohir.D02G129700 Gossypium hirsutum
Gohir.D03G140800 Gossypium hirsutum
Gohir.D03G140900 Gossypium hirsutum
Gohir.D05G078700 Gossypium hirsutum
Gohir.D05G085901 Gossypium hirsutum
Gohir.D11G326400 Gossypium hirsutum
Gohir.D12G167300 Gossypium hirsutum
Gorai.003G147700 Gossypium raimondii
Gorai.005G030700 Gossypium raimondii
Gorai.005G145600 Gossypium raimondii
Gorai.008G180200 Gossypium raimondii
Gorai.009G080100 Gossypium raimondii
GSVIVG01023007001 Vitis vinifera
GSVIVG01037501001 Vitis vinifera
GSVIVG01038094001 Vitis vinifera
HanXRQChr06g0180651 Helianthus annuus
HanXRQChr07g0205981 Helianthus annuus
HanXRQChr12g0371061 Helianthus annuus
Haze_00082 Corylus avellana
Haze_01397 Corylus avellana
Haze_12029 Corylus avellana
Haze_23633 Corylus avellana
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla
HPP92_013448 Vanilla planifolia
HPP92_013468 Vanilla planifolia
HPP92_013469 Vanilla planifolia
HPP92_015460 Vanilla planifolia
HPP92_016856 Vanilla planifolia
HPP92_016914 Vanilla planifolia
Hund10980 Selenicereus undatus
Hund14885 Selenicereus undatus
Hund20974 Selenicereus undatus
Hund25254 Selenicereus undatus
Lalb_Chr10g0098161 Lupinus albus
Lalb_Chr10g0105801 Lupinus albus
Lalb_Chr18g0052141 Lupinus albus
Lj2A895G19 Lonicera japonica
Lj2A895T22 Lonicera japonica
Lj2C893G11 Lonicera japonica
Lj2C893T10 Lonicera japonica
Lj2g0010789 Lotus japonicus
Lj3C1039T11 Lonicera japonica
Lj5A679G28 Lonicera japonica
Lj6g0023615 Lotus japonicus
Lj8A728T10 Lonicera japonica
LjContig00564g0017485 Lotus japonicus
Lsat_1_v5_gn_2_37520 Lactuca sativa
Lsat_1_v5_gn_8_112440 Lactuca sativa
Lsat_1_v5_gn_8_4521 Lactuca sativa
Lsat_1_v5_gn_8_69520 Lactuca sativa
Manes.06G018600 Manihot esculenta
Manes.11G103300 Manihot esculenta
Manes.11G105600 Manihot esculenta
Mapoly0056s0125 Marchantia polymorpha
Mapoly0087s0082 Marchantia polymorpha
Mapoly1495s0001 Marchantia polymorpha
MBI05_g28392_MAGBIO Magnolia biondii
MBI07_g03077_MAGBIO Magnolia biondii
MBI07_g03083_MAGBIO Magnolia biondii
MCO03G199 Micromonas commoda
MCO09G295 Micromonas commoda
MCO16G120 Micromonas commoda
MD00G1080400 Malus domestica
MD03G1229800 Malus domestica
MD05G1272100 Malus domestica
MD10G1276700 Malus domestica
MD11G1181200 Malus domestica
MD11G1250300 Malus domestica
MD12G1168900 Malus domestica
MD13G1073900 Malus domestica
MD16G1075100 Malus domestica
Medtr1g102335 Medicago truncatula
Medtr5g039440 Medicago truncatula
Medtr5g087490 Medicago truncatula
MELO3C013949.2 Cucumis melo
MELO3C015599.2 Cucumis melo
MELO3C015610.2 Cucumis melo
Migut.D00847 Erythranthe guttata
Migut.L01310 Erythranthe guttata
Migut.N02410 Erythranthe guttata
MSTRG.12417 Avicennia marina
MSTRG.21240 Avicennia marina
MSTRG.691 Avicennia marina
Nitab4.5_0000141g0270 Nicotiana tabacum
Nitab4.5_0000428g0110 Nicotiana tabacum
Nitab4.5_0000496g0060 Nicotiana tabacum
Nitab4.5_0002300g0120 Nicotiana tabacum
Nitab4.5_0002704g0060 Nicotiana tabacum
Nitab4.5_0003566g0010 Nicotiana tabacum
Nn1g00103 Nelumbo nucifera
Nn1g08035 Nelumbo nucifera
Nn1g09429 Nelumbo nucifera
Nn4g23114 Nelumbo nucifera
Nn7g37454 Nelumbo nucifera
Oeu013623.1 Olea europaea
Oeu027580.1 Olea europaea
Oeu027581.1 Olea europaea
Oeu050015.1 Olea europaea
Oeu051504.1 Olea europaea
Os01g0801700 Oryza sativa ssp. japonica
Os03g0379400 Oryza sativa ssp. japonica
Os04g0661600 Oryza sativa ssp. japonica
Peaxi162Scf00007g01329 Petunia axillaris
Peaxi162Scf00026g03113 Petunia axillaris
Peaxi162Scf00050g02227 Petunia axillaris
PGR119G0245 Punica granatum
PGR119G0480 Punica granatum
PGR142G2642 Punica granatum
PGSC0003DMG400005941 Solanum tuberosum
PGSC0003DMG400009618 Solanum tuberosum
Phvul.002G086800 Phaseolus vulgaris
Phvul.008G209600 Phaseolus vulgaris
Phvul.009G242000 Phaseolus vulgaris
Potri.007G133900 Populus trichocarpa
Potri.009G156400 Populus trichocarpa
Potri.012G021000 Populus trichocarpa
Potri.015G004400 Populus trichocarpa
Potri.017G017901 Populus trichocarpa
Pp3c14_4050 Physcomitrium patens
Pp3c23_9160 Physcomitrium patens
Pp3c24_4220 Physcomitrium patens
PRCOL_00002568 Prasinoderma coloniale
Prupe.1G272100 Prunus persica
Prupe.3G107100 Prunus persica
Prupe.4G179500 Prunus persica
Prupe.6G153900 Prunus persica
Psat2g023160 Pisum sativum
Psat2g121440 Pisum sativum
Psat5g075120 Pisum sativum
PSO017G4006 Papaver somniferum
PSO063G3912 Papaver somniferum
PSO063G3947 Papaver somniferum
PSO210G4030 Papaver somniferum
PSO478G0282 Papaver somniferum
PSO782G1531 Papaver somniferum
PSO832G4559 Papaver somniferum
QL01p007286 Quercus lobata
QL01p007301 Quercus lobata
QL03p060335 Quercus lobata
QL03p064604 Quercus lobata
QL10p006125 Quercus lobata
RcHm_v2.0_Chr4g0440071 Rosa chinensis
RcHm_v2.0_Chr5g0048741 Rosa chinensis
RcHm_v2.0_Chr5g0048751 Rosa chinensis
Rhsim01G0197500 Rhododendron simsii
Rhsim12G0173100 Rhododendron simsii
Sabra04G0059300 Salix brachista
Sabra07G0108700 Salix brachista
Sabra07G0121000 Salix brachista
Sabra09G0122500 Salix brachista
Sabra12G0003000 Salix brachista
Sabra15G0003000 Salix brachista
SalBow2G2991 Salvia bowleyana
SalBow2G3361 Salvia bowleyana
SalBow3G4459 Salvia bowleyana
Sc01g0005570 Simmondsia chinensis
Sc11g0001820 Simmondsia chinensis
Sc21g0006570 Simmondsia chinensis
Sc25g0002290 Simmondsia chinensis
Sed0000960 Sechium edule
Sed0001025 Sechium edule
Sed0011075 Sechium edule
SEGI_00915 Sequoiadendron giganteum
SEGI_02371 Sequoiadendron giganteum
SEGI_27969 Sequoiadendron giganteum
SEGI_28205 Sequoiadendron giganteum
SEGI_32063 Sequoiadendron giganteum
SEGI_32430 Sequoiadendron giganteum
SEGI_37017 Sequoiadendron giganteum
SGA_v2.0_scaffold154G37192 Striga asiatica
SGA_v2.0_scaffold16G07584 Striga asiatica
SGA_v2.0_scaffold1G00702 Striga asiatica
SGA_v2.0_scaffold25G11133 Striga asiatica
SGA_v2.0_scaffold28G11982 Striga asiatica
SGA_v2.0_scaffold4653G54517 Striga asiatica
SGA_v2.0_scaffold53G19414 Striga asiatica
SGA_v2.0_scaffold6G03251 Striga asiatica
SHI25334 Sapria himalayana
SHI25335 Sapria himalayana
SHI53821 Sapria himalayana
SMO145G0256 Selaginella moellendorffii
SMO236G0017 Selaginella moellendorffii
SMO307G0084 Selaginella moellendorffii
Solyc01g009050.3 Solanum lycopersicum
Solyc01g010570.4 Solanum lycopersicum
Solyc05g056510.3 Solanum lycopersicum
Sopen01g004540 Solanum pennellii
Sopen01g006220 Solanum pennellii
Sopen05g034910 Solanum pennellii
Sp2g13960 Schrenkiella parvula
Sp2g25470 Schrenkiella parvula
Sp6g23530 Schrenkiella parvula
TAR374G1328 Trochodendron aralioides
TAR375G0698 Trochodendron aralioides
TAR626G1975 Trochodendron aralioides
TAR627G0849 Trochodendron aralioides
TAR629G0383 Trochodendron aralioides
TAR629G1744 Trochodendron aralioides
THA.LOC104805152 Tarenaya hassleriana
THA.LOC104820518 Tarenaya hassleriana
THA.LOC104821398 Tarenaya hassleriana
Thecc.02G349900 Theobroma cacao
Thecc.04G200200 Theobroma cacao
Thecc.09G265000 Theobroma cacao
Thhalv10000666m.g Eutrema salsugineum
Thhalv10004417m.g Eutrema salsugineum
Thhalv10004617m.g Eutrema salsugineum
Thhalv10010049m.g Eutrema salsugineum
Thhalv10012894m.g Eutrema salsugineum
Thhalv10026429m.g Eutrema salsugineum
TPR.G11462 Trifolium pratense
TPR.G11692 Trifolium pratense
TPR.G22712 Trifolium pratense
TPR.G24627 Trifolium pratense
TPR.G31851 Trifolium pratense
TPR.G37035 Trifolium pratense
TWI18G0113 Tripterygium wilfordii
TWI31G0930 Tripterygium wilfordii
TWI36G1000 Tripterygium wilfordii
TWI56G1164 Tripterygium wilfordii
unitig_22.g6913 Utricularia gibba
unitig_699.g19728 Utricularia gibba
unitig_8.g2986 Utricularia gibba
vmacro14297 Vaccinium macrocarpon
vmacro16663 Vaccinium macrocarpon
vmacro23059 Vaccinium macrocarpon
VMungo0647G2429 Vigna mungo
VMungo1215G3305 Vigna mungo
VMungo1309G2065 Vigna mungo
Zm00001eb067470 Zea mays
Zm00001eb150640 Zea mays
Zm00001eb369380 Zea mays
Zm00001eb392280 Zea mays
Zm00001eb432770 Zea mays

User provided reference genes

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