Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001564', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '408', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p38410' => 'bna', 'A02p39710' => 'bna', 'A03p39440' => 'bna', 'A06p36200' => 'bna', 'A07p17810' => 'bna', 'Aa31LG11G4840' => 'aar', 'Aa31LG5G9070' => 'aar', 'Aa31LG8G2880' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.205' => 'aag', 'Actinidia07435' => 'ach', 'Actinidia22005' => 'ach', 'Actinidia26404' => 'ach', 'Actinidia40452' => 'ach', 'Ah.09g225790' => 'amhyb', 'Ah.09g225800' => 'amhyb', 'Ah.10g026320' => 'amhyb', 'Ah.12g064030' => 'amhyb', 'Ah.14g080630' => 'amhyb', 'AL3G28340' => 'aly', 'AL4G19730' => 'aly', 'AL6G37290' => 'aly', 'Aqoxy7G02086' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2YFD5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81V95F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CN67L5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2CVAQ' => 'arhy', 'AT2G26695' => 'ath', 'AT3G15680' => 'ath', 'AT5G25490' => 'ath', 'Atru.chr1.3091' => 'acertr', 'Atru.chr7.1191' => 'acertr', 'Atru.chr7.1193' => 'acertr', 'Atru.chr7.2384' => 'acertr', 'AUR62011084' => 'cqu', 'AUR62011085' => 'cqu', 'AUR62024886' => 'cqu', 'AUR62030661' => 'cqu', 'AUR62033466' => 'cqu', 'AUR62033467' => 'cqu', 'BcaB04g20907' => 'bca', 'BcaB07g29995' => 'bca', 'BcaC01g03860' => 'bca', 'BcaC01g03861' => 'bca', 'BcaC01g03862' => 'bca', 'BcaC02g10834' => 'bca', 'BcaC09g48549' => 'bca', 'BcaNung07111' => 'bca', 'BolC1t04827H' => 'bol', 'BolC2t12012H' => 'bol', 'BolC3t17061H' => 'bol', 'BolC4t23970H' => 'bol', 'BolC7t44762H' => 'bol', 'BraA01t03891Z' => 'bra', 'BraA02t08936Z' => 'bra', 'BraA03t13094Z' => 'bra', 'BraA06t26541Z' => 'bra', 'BraA07t29501Z' => 'bra', 'C01p48720' => 'bna', 'C02p59490' => 'bna', 'C03p47830' => 'bna', 'C04p24640' => 'bna', 'C07p42330' => 'bna', 'CAN.G348.2' => 'can', 'CAN.G377.4' => 'can', 'CAN.G377.5' => 'can', 'CANSAT11G0701' => 'cansat', 'CANSAT56G0615' => 'cansat', 'CARHR090770' => 'chi', 'CARHR118750' => 'chi', 'CARHR187900' => 'chi', 'Carub.0003s1543' => 'cru', 'Carub.0004s0700' => 'cru', 'Carub.0006s2335' => 'cru', 'Ca_02445_v3' => 'car', 'Ca_15722_v3' => 'car', 'Ca_20426_v3' => 'car', 'Ca_21698_v3' => 'car', 'CBR_g38837' => 'cbr', 'Cc06_g08810' => 'ccan', 'Cc11_g01930' => 'ccan', 'CDE04G2147' => 'cde', 'Cfa002010' => 'cfa', 'Cfa003344' => 'cfa', 'Cfa023651' => 'cfa', 'Ciclev10009760m.g' => 'ccl', 'Ciclev10009893m.g' => 'ccl', 'Ciclev10026703m.g' => 'ccl', 'CiPaw.01G244500' => 'cil', 'CiPaw.02G154900' => 'cil', 'CiPaw.03G241500' => 'cil', 'CiPaw.04G170100' => 'cil', 'CiPaw.07G221200' => 'cil', 'CiPaw.08G012900' => 'cil', 'ClCG06G010900' => 'cla', 'ClCG07G012800' => 'cla', 'ClCG08G013170' => 'cla', 'ClCG11G002870' => 'cla', 'COL.COLO4_05759' => 'col', 'COL.COLO4_12897' => 'col', 'COL.COLO4_23975' => 'col', 'COL.COLO4_25495' => 'col', 'Cpa.g.sc115.12' => 'cpa', 'Cpa.g.sc336.9' => 'cpa', 'Cpa.g.sc75.58' => 'cpa', 'CsaV3_1G029820' => 'csa', 'CsaV3_2G002710' => 'csa', 'CsaV3_2G031890' => 'csa', 'CsaV3_4G001400' => 'csa', 'CSS0003314' => 'camsi', 'CSS0017404' => 'camsi', 'CSS0026256' => 'camsi', 'CSS0030088' => 'camsi', 'CSS0030555' => 'camsi', 'CSS0036181' => 'camsi', 'CSS0037183' => 'camsi', 'CSS0039712' => 'camsi', 'CSS0040547' => 'camsi', 'CSS0040777' => 'camsi', 'CSS0049275' => 'camsi', 'DCAR_003041' => 'dca', 'DCAR_009202' => 'dca', 'DCAR_009203' => 'dca', 'DCAR_014864' => 'dca', 'DCAR_017833' => 'dca', 'Dinv11624' => 'din', 'Dinv36550' => 'din', 'Dinv36551' => 'din', 'Dinv41533' => 'din', 'Duzib150G1447' => 'dzi', 'Duzib160G0303' => 'dzi', 'Duzib168G1240' => 'dzi', 'Duzib168G1983' => 'dzi', 'Duzib187G0397' => 'dzi', 'Duzib187G0642' => 'dzi', 'Duzib192G0024' => 'dzi', 'Duzib192G0968' => 'dzi', 'Duzib235G0157' => 'dzi', 'ECA233G4471' => 'eca', 'ECA234G0565' => 'eca', 'ECA234G0849' => 'eca', 'EL10Ac2g02598' => 'bvu', 'EL10Ac8g18609' => 'bvu', 'EL10Ac8g18610' => 'bvu', 'Eucgr.C01126' => 'egr', 'Eucgr.C01132' => 'egr', 'Eucgr.C01779' => 'egr', 'Eucgr.C02807' => 'egr', 'Eucgr.F02548' => 'egr', 'Eucgr.L00288' => 'egr', 'Eucgr.L00295' => 'egr', 'FAN02G4335' => 'fan', 'FAN05G3054' => 'fan', 'FAN09G2896' => 'fan', 'FAN14G1205' => 'fan', 'FAN15G3262' => 'fan', 'FAN19G1352' => 'fan', 'FAN20G2165' => 'fan', 'FAN23G1583' => 'fan', 'FAN24G1530' => 'fan', 'FAN26G3103' => 'fan', 'FAN27G2421' => 'fan', 'FAN28G0859' => 'fan', 'FvH4_1g03630' => 'fve', 'FvH4_2g29540' => 'fve', 'FvH4_6g30320' => 'fve', 'Glyma.02G196600' => 'gma', 'Glyma.04G068400' => 'gma', 'Glyma.05G008600' => 'gma', 'Glyma.05G008700' => 'gma', 'Glyma.06G069900' => 'gma', 'Glyma.06G216600' => 'gma', 'Glyma.07G032300' => 'gma', 'Glyma.08G210200' => 'gma', 'Glyma.17G116800' => 'gma', 'Glyma.17G116900' => 'gma', 'Gohir.A05G009300' => 'ghi', 'Gohir.A05G018000' => 'ghi', 'Gohir.A05G125100' => 'ghi', 'Gohir.A06G057400' => 'ghi', 'Gohir.A06G186900' => 'ghi', 'Gohir.A13G199000' => 'ghi', 'Gohir.D05G010000' => 'ghi', 'Gohir.D05G018900' => 'ghi', 'Gohir.D05G126100' => 'ghi', 'Gohir.D06G055700' => 'ghi', 'Gohir.D06G193100' => 'ghi', 'Gohir.D13G204400' => 'ghi', 'Gorai.009G010300' => 'gra', 'Gorai.009G019300' => 'gra', 'Gorai.009G130100' => 'gra', 'Gorai.010G065000' => 'gra', 'Gorai.010G227000' => 'gra', 'Gorai.013G233200' => 'gra', 'GSVIVG01015499001' => 'vvi', 'GSVIVG01017252001' => 'vvi', 'GSVIVG01035819001' => 'vvi', 'HanXRQChr01g0031111' => 'han', 'HanXRQChr02g0050811' => 'han', 'HanXRQChr10g0316651' => 'han', 'HanXRQChr10g0316661' => 'han', 'HanXRQChr12g0356401' => 'han', 'HanXRQChr12g0356421' => 'han', 'HanXRQChr12g0356431' => 'han', 'HanXRQChr13g0402691' => 'han', 'Haze_16514' => 'cav', 'Haze_21557' => 'cav', 'Hma1.2p1_0665F.1_g199180' => 'hma', 'HPP92_008654' => 'vpl', 'HPP92_023168' => 'vpl', 'HPP92_024604' => 'vpl', 'Hund03022' => 'sun', 'Hund09145' => 'sun', 'Hund09146' => 'sun', 'Hund26485' => 'sun', 'Hund26490' => 'sun', 'Lalb_Chr04g0262471' => 'lal', 'Lalb_Chr07g0178781' => 'lal', 'Lalb_Chr08g0243981' => 'lal', 'Lalb_Chr11g0063821' => 'lal', 'Lalb_Chr13g0301981' => 'lal', 'Lalb_Chr14g0373691' => 'lal', 'Lalb_Chr19g0135021' => 'lal', 'Lj1g0016866' => 'lja', 'Lj3g0007786' => 'lja', 'Lj4C463T2' => 'lonja', 'Lj4g0004155' => 'lja', 'Lj6g0008040' => 'lja', 'Lj7A719T41' => 'lonja', 'Lj8C624T10' => 'lonja', 'Lsat_1_v5_gn_5_31741' => 'lsa', 'Lsat_1_v5_gn_5_98101' => 'lsa', 'Lsat_1_v5_gn_5_98121' => 'lsa', 'Lsat_1_v5_gn_6_22340' => 'lsa', 'Lsat_1_v5_gn_8_57381' => 'lsa', 'Manes.03G017100' => 'mes', 'Manes.04G116400' => 'mes', 'Manes.06G050100' => 'mes', 'Manes.11G052700' => 'mes', 'Manes.14G130000' => 'mes', 'Manes.14G130300' => 'mes', 'Manes.16G120000' => 'mes', 'Mapoly0019s0131' => 'mpo', 'MBI04_g19548_MAGBIO' => 'mbi', 'MBI04_g30115_MAGBIO' => 'mbi', 'MCO05G332' => 'mco', 'MCO13G454' => 'mco', 'MCO14G117' => 'mco', 'MCO15G280' => 'mco', 'MCO16G458' => 'mco', 'MD02G1035800' => 'mdo', 'MD08G1146100' => 'mdo', 'MD09G1220800' => 'mdo', 'MD15G1121500' => 'mdo', 'MD15G1176000' => 'mdo', 'MD17G1204500' => 'mdo', 'Medtr2g054750' => 'mtr', 'Medtr3g107610' => 'mtr', 'Medtr4g011190' => 'mtr', 'Medtr4g113840' => 'mtr', 'MELO3C004523.2' => 'cme', 'MELO3C011238.2' => 'cme', 'MELO3C017900.2' => 'cme', 'MELO3C023401.2' => 'cme', 'MELO3C026642.2' => 'cme', 'Migut.J01181' => 'egut', 'Migut.K00463' => 'egut', 'Migut.K00472' => 'egut', 'MSTRG.11772' => 'ama', 'MSTRG.19608' => 'ama', 'MSTRG.25849' => 'ama', 'MSTRG.6066' => 'ama', 'Nitab4.5_0000151g0010' => 'nta', 'Nitab4.5_0003558g0030' => 'nta', 'Nitab4.5_0003558g0070' => 'nta', 'Nitab4.5_0003558g0080' => 'nta', 'Nitab4.5_0003558g0090' => 'nta', 'Nitab4.5_0004501g0010' => 'nta', 'Nitab4.5_0005563g0020' => 'nta', 'Nitab4.5_0005563g0030' => 'nta', 'Nitab4.5_0005563g0040' => 'nta', 'Nn8g39385' => 'nnu', 'Oeu020100.1' => 'oeu', 'Oeu022127.1' => 'oeu', 'Oeu030208.1' => 'oeu', 'Oeu034107.1' => 'oeu', 'Oeu045333.1' => 'oeu', 'Oeu058055.1' => 'oeu', 'Os01g0555100' => 'osa', 'Os02g0203700' => 'osa', 'Os06g0141200' => 'osa', 'Peaxi162Scf00341g00012' => 'pax', 'Peaxi162Scf00641g00018' => 'pax', 'Peaxi162Scf00984g00119' => 'pax', 'Peaxi162Scf00984g10021' => 'pax', 'PGR031G0194' => 'pgr', 'PGR031G3637' => 'pgr', 'PGR142G1478' => 'pgr', 'PGSC0003DMG400007381' => 'stu', 'PGSC0003DMG400007852' => 'stu', 'PGSC0003DMG401020664' => 'stu', 'PGSC0003DMG402020664' => 'stu', 'Phvul.003G162400' => 'pvu', 'Phvul.003G162500' => 'pvu', 'Phvul.005G175000' => 'pvu', 'Phvul.009G094900' => 'pvu', 'Phvul.009G198300' => 'pvu', 'Phvul.010G153700' => 'pvu', 'Potri.001G172700' => 'ptr', 'Potri.003G061300' => 'ptr', 'Potri.006G149900' => 'ptr', 'Potri.006G251300' => 'ptr', 'Potri.018G029900' => 'ptr', 'Potri.018G066900' => 'ptr', 'PRCOL_00004617' => 'pco', 'Prupe.1G474600' => 'ppe', 'Prupe.3G080000' => 'ppe', 'Prupe.7G239400' => 'ppe', 'Psat0s3001g0040' => 'psa', 'Psat1g026920' => 'psa', 'Psat4g041680' => 'psa', 'Psat7g255600' => 'psa', 'PSO170G3356' => 'pso', 'PSO210G2060' => 'pso', 'PSO210G5966' => 'pso', 'PSO455G0132' => 'pso', 'QL02p022388' => 'qlo', 'QL02p087744' => 'qlo', 'QL05p027843' => 'qlo', 'RcHm_v2.0_Chr2g0136561' => 'rch', 'RcHm_v2.0_Chr6g0298401' => 'rch', 'Rhsim01G0007400' => 'rsi', 'Rhsim01G0007600' => 'rsi', 'Rhsim01G0076900' => 'rsi', 'Rhsim02G0195300' => 'rsi', 'Rhsim02G0196500' => 'rsi', 'Rhsim11G0119300' => 'rsi', 'Sabra03G0035600' => 'sbr', 'Sabra06G0118600' => 'sbr', 'Sabra06G0196400' => 'sbr', 'Sabra18G0031700' => 'sbr', 'Sabra18G0060000' => 'sbr', 'Sc18g0000730' => 'sci', 'Sed0001195' => 'sed', 'Sed0001713' => 'sed', 'Sed0004083' => 'sed', 'Sed0010705' => 'sed', 'Sed0021606' => 'sed', 'Sed0024738' => 'sed', 'Sed0025918' => 'sed', 'SGA_v2.0_scaffold1093G53838' => 'sas', 'SGA_v2.0_scaffold45G17067' => 'sas', 'SHI18574' => 'shi', 'SMO164G0137' => 'smo', 'SMO329G0042' => 'smo', 'Solyc08g067180.4' => 'sly', 'Solyc12g006590.3' => 'sly', 'Solyc12g006600.3' => 'sly', 'Solyc12g011060.3' => 'sly', 'Sopen08g021120' => 'spe', 'Sopen12g002540' => 'spe', 'Sopen12g002550' => 'spe', 'Sopen12g006430' => 'spe', 'Sp2g22040' => 'spa', 'Sp3g13980' => 'spa', 'Sp4g08900' => 'spa', 'TAR383G0790' => 'tar', 'TAR625G0543' => 'tar', 'TAR636G1357' => 'tar', 'TAR636G1593' => 'tar', 'TAR636G2046' => 'tar', 'THA.LOC104799705' => 'tha', 'THA.LOC104809001' => 'tha', 'THA.LOC104810500' => 'tha', 'THA.LOC104818036' => 'tha', 'THA.LOC104826539' => 'tha', 'Thecc.06G072500' => 'tca', 'Thecc.09G122800' => 'tca', 'Thecc.09G149700' => 'tca', 'Thhalv10005026m.g' => 'esa', 'Thhalv10017402m.g' => 'esa', 'Thhalv10021670m.g' => 'esa', 'TPR.G10349' => 'tpr', 'TPR.G10709' => 'tpr', 'TPR.G31764' => 'tpr', 'TPR.G38630' => 'tpr', 'TWI12G0810' => 'twi', 'TWI34G0224' => 'twi', 'TWI34G1607' => 'twi', 'TWI63G0584' => 'twi', 'TWI63G1484' => 'twi', 'TWI75G1763' => 'twi', 'unitig_32.g11666' => 'ugi', 'unitig_748.g7149' => 'ugi', 'unitig_748.g7371' => 'ugi', 'vmacro05191' => 'vma', 'vmacro06176' => 'vma', 'vmacro11151' => 'vma', 'vmacro13104' => 'vma', 'vmacro23135' => 'vma', 'VMungo0331G1537' => 'vmu', 'VMungo1215G0495' => 'vmu', 'VMungo1215G2977' => 'vmu', 'VMungo1309G0321' => 'vmu', 'VMungo1309G1359' => 'vmu', 'Zm00001eb205550' => 'zma', 'Zm00001eb235450' => 'zma', 'Zm00001eb356350' => 'zma', 'Zm00001eb377420' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001564', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001564' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001564', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '408', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001564' ) ), 'genes' => array( 'A01p38410' => 'bna', 'A02p39710' => 'bna', 'A03p39440' => 'bna', 'A06p36200' => 'bna', 'A07p17810' => 'bna', 'Aa31LG11G4840' => 'aar', 'Aa31LG5G9070' => 'aar', 'Aa31LG8G2880' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.205' => 'aag', 'Actinidia07435' => 'ach', 'Actinidia22005' => 'ach', 'Actinidia26404' => 'ach', 'Actinidia40452' => 'ach', 'Ah.09g225790' => 'amhyb', 'Ah.09g225800' => 'amhyb', 'Ah.10g026320' => 'amhyb', 'Ah.12g064030' => 'amhyb', 'Ah.14g080630' => 'amhyb', 'AL3G28340' => 'aly', 'AL4G19730' => 'aly', 'AL6G37290' => 'aly', 'Aqoxy7G02086' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2YFD5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81V95F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CN67L5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2CVAQ' => 'arhy', 'AT2G26695' => 'ath', 'AT3G15680' => 'ath', 'AT5G25490' => 'ath', 'Atru.chr1.3091' => 'acertr', 'Atru.chr7.1191' => 'acertr', 'Atru.chr7.1193' => 'acertr', 'Atru.chr7.2384' => 'acertr', 'AUR62011084' => 'cqu', 'AUR62011085' => 'cqu', 'AUR62024886' => 'cqu', 'AUR62030661' => 'cqu', 'AUR62033466' => 'cqu', 'AUR62033467' => 'cqu', 'BcaB04g20907' => 'bca', 'BcaB07g29995' => 'bca', 'BcaC01g03860' => 'bca', 'BcaC01g03861' => 'bca', 'BcaC01g03862' => 'bca', 'BcaC02g10834' => 'bca', 'BcaC09g48549' => 'bca', 'BcaNung07111' => 'bca', 'BolC1t04827H' => 'bol', 'BolC2t12012H' => 'bol', 'BolC3t17061H' => 'bol', 'BolC4t23970H' => 'bol', 'BolC7t44762H' => 'bol', 'BraA01t03891Z' => 'bra', 'BraA02t08936Z' => 'bra', 'BraA03t13094Z' => 'bra', 'BraA06t26541Z' => 'bra', 'BraA07t29501Z' => 'bra', 'C01p48720' => 'bna', 'C02p59490' => 'bna', 'C03p47830' => 'bna', 'C04p24640' => 'bna', 'C07p42330' => 'bna', 'CAN.G348.2' => 'can', 'CAN.G377.4' => 'can', 'CAN.G377.5' => 'can', 'CANSAT11G0701' => 'cansat', 'CANSAT56G0615' => 'cansat', 'CARHR090770' => 'chi', 'CARHR118750' => 'chi', 'CARHR187900' => 'chi', 'Carub.0003s1543' => 'cru', 'Carub.0004s0700' => 'cru', 'Carub.0006s2335' => 'cru', 'Ca_02445_v3' => 'car', 'Ca_15722_v3' => 'car', 'Ca_20426_v3' => 'car', 'Ca_21698_v3' => 'car', 'CBR_g38837' => 'cbr', 'Cc06_g08810' => 'ccan', 'Cc11_g01930' => 'ccan', 'CDE04G2147' => 'cde', 'Cfa002010' => 'cfa', 'Cfa003344' => 'cfa', 'Cfa023651' => 'cfa', 'Ciclev10009760m.g' => 'ccl', 'Ciclev10009893m.g' => 'ccl', 'Ciclev10026703m.g' => 'ccl', 'CiPaw.01G244500' => 'cil', 'CiPaw.02G154900' => 'cil', 'CiPaw.03G241500' => 'cil', 'CiPaw.04G170100' => 'cil', 'CiPaw.07G221200' => 'cil', 'CiPaw.08G012900' => 'cil', 'ClCG06G010900' => 'cla', 'ClCG07G012800' => 'cla', 'ClCG08G013170' => 'cla', 'ClCG11G002870' => 'cla', 'COL.COLO4_05759' => 'col', 'COL.COLO4_12897' => 'col', 'COL.COLO4_23975' => 'col', 'COL.COLO4_25495' => 'col', 'Cpa.g.sc115.12' => 'cpa', 'Cpa.g.sc336.9' => 'cpa', 'Cpa.g.sc75.58' => 'cpa', 'CsaV3_1G029820' => 'csa', 'CsaV3_2G002710' => 'csa', 'CsaV3_2G031890' => 'csa', 'CsaV3_4G001400' => 'csa', 'CSS0003314' => 'camsi', 'CSS0017404' => 'camsi', 'CSS0026256' => 'camsi', 'CSS0030088' => 'camsi', 'CSS0030555' => 'camsi', 'CSS0036181' => 'camsi', 'CSS0037183' => 'camsi', 'CSS0039712' => 'camsi', 'CSS0040547' => 'camsi', 'CSS0040777' => 'camsi', 'CSS0049275' => 'camsi', 'DCAR_003041' => 'dca', 'DCAR_009202' => 'dca', 'DCAR_009203' => 'dca', 'DCAR_014864' => 'dca', 'DCAR_017833' => 'dca', 'Dinv11624' => 'din', 'Dinv36550' => 'din', 'Dinv36551' => 'din', 'Dinv41533' => 'din', 'Duzib150G1447' => 'dzi', 'Duzib160G0303' => 'dzi', 'Duzib168G1240' => 'dzi', 'Duzib168G1983' => 'dzi', 'Duzib187G0397' => 'dzi', 'Duzib187G0642' => 'dzi', 'Duzib192G0024' => 'dzi', 'Duzib192G0968' => 'dzi', 'Duzib235G0157' => 'dzi', 'ECA233G4471' => 'eca', 'ECA234G0565' => 'eca', 'ECA234G0849' => 'eca', 'EL10Ac2g02598' => 'bvu', 'EL10Ac8g18609' => 'bvu', 'EL10Ac8g18610' => 'bvu', 'Eucgr.C01126' => 'egr', 'Eucgr.C01132' => 'egr', 'Eucgr.C01779' => 'egr', 'Eucgr.C02807' => 'egr', 'Eucgr.F02548' => 'egr', 'Eucgr.L00288' => 'egr', 'Eucgr.L00295' => 'egr', 'FAN02G4335' => 'fan', 'FAN05G3054' => 'fan', 'FAN09G2896' => 'fan', 'FAN14G1205' => 'fan', 'FAN15G3262' => 'fan', 'FAN19G1352' => 'fan', 'FAN20G2165' => 'fan', 'FAN23G1583' => 'fan', 'FAN24G1530' => 'fan', 'FAN26G3103' => 'fan', 'FAN27G2421' => 'fan', 'FAN28G0859' => 'fan', 'FvH4_1g03630' => 'fve', 'FvH4_2g29540' => 'fve', 'FvH4_6g30320' => 'fve', 'Glyma.02G196600' => 'gma', 'Glyma.04G068400' => 'gma', 'Glyma.05G008600' => 'gma', 'Glyma.05G008700' => 'gma', 'Glyma.06G069900' => 'gma', 'Glyma.06G216600' => 'gma', 'Glyma.07G032300' => 'gma', 'Glyma.08G210200' => 'gma', 'Glyma.17G116800' => 'gma', 'Glyma.17G116900' => 'gma', 'Gohir.A05G009300' => 'ghi', 'Gohir.A05G018000' => 'ghi', 'Gohir.A05G125100' => 'ghi', 'Gohir.A06G057400' => 'ghi', 'Gohir.A06G186900' => 'ghi', 'Gohir.A13G199000' => 'ghi', 'Gohir.D05G010000' => 'ghi', 'Gohir.D05G018900' => 'ghi', 'Gohir.D05G126100' => 'ghi', 'Gohir.D06G055700' => 'ghi', 'Gohir.D06G193100' => 'ghi', 'Gohir.D13G204400' => 'ghi', 'Gorai.009G010300' => 'gra', 'Gorai.009G019300' => 'gra', 'Gorai.009G130100' => 'gra', 'Gorai.010G065000' => 'gra', 'Gorai.010G227000' => 'gra', 'Gorai.013G233200' => 'gra', 'GSVIVG01015499001' => 'vvi', 'GSVIVG01017252001' => 'vvi', 'GSVIVG01035819001' => 'vvi', 'HanXRQChr01g0031111' => 'han', 'HanXRQChr02g0050811' => 'han', 'HanXRQChr10g0316651' => 'han', 'HanXRQChr10g0316661' => 'han', 'HanXRQChr12g0356401' => 'han', 'HanXRQChr12g0356421' => 'han', 'HanXRQChr12g0356431' => 'han', 'HanXRQChr13g0402691' => 'han', 'Haze_16514' => 'cav', 'Haze_21557' => 'cav', 'Hma1.2p1_0665F.1_g199180' => 'hma', 'HPP92_008654' => 'vpl', 'HPP92_023168' => 'vpl', 'HPP92_024604' => 'vpl', 'Hund03022' => 'sun', 'Hund09145' => 'sun', 'Hund09146' => 'sun', 'Hund26485' => 'sun', 'Hund26490' => 'sun', 'Lalb_Chr04g0262471' => 'lal', 'Lalb_Chr07g0178781' => 'lal', 'Lalb_Chr08g0243981' => 'lal', 'Lalb_Chr11g0063821' => 'lal', 'Lalb_Chr13g0301981' => 'lal', 'Lalb_Chr14g0373691' => 'lal', 'Lalb_Chr19g0135021' => 'lal', 'Lj1g0016866' => 'lja', 'Lj3g0007786' => 'lja', 'Lj4C463T2' => 'lonja', 'Lj4g0004155' => 'lja', 'Lj6g0008040' => 'lja', 'Lj7A719T41' => 'lonja', 'Lj8C624T10' => 'lonja', 'Lsat_1_v5_gn_5_31741' => 'lsa', 'Lsat_1_v5_gn_5_98101' => 'lsa', 'Lsat_1_v5_gn_5_98121' => 'lsa', 'Lsat_1_v5_gn_6_22340' => 'lsa', 'Lsat_1_v5_gn_8_57381' => 'lsa', 'Manes.03G017100' => 'mes', 'Manes.04G116400' => 'mes', 'Manes.06G050100' => 'mes', 'Manes.11G052700' => 'mes', 'Manes.14G130000' => 'mes', 'Manes.14G130300' => 'mes', 'Manes.16G120000' => 'mes', 'Mapoly0019s0131' => 'mpo', 'MBI04_g19548_MAGBIO' => 'mbi', 'MBI04_g30115_MAGBIO' => 'mbi', 'MCO05G332' => 'mco', 'MCO13G454' => 'mco', 'MCO14G117' => 'mco', 'MCO15G280' => 'mco', 'MCO16G458' => 'mco', 'MD02G1035800' => 'mdo', 'MD08G1146100' => 'mdo', 'MD09G1220800' => 'mdo', 'MD15G1121500' => 'mdo', 'MD15G1176000' => 'mdo', 'MD17G1204500' => 'mdo', 'Medtr2g054750' => 'mtr', 'Medtr3g107610' => 'mtr', 'Medtr4g011190' => 'mtr', 'Medtr4g113840' => 'mtr', 'MELO3C004523.2' => 'cme', 'MELO3C011238.2' => 'cme', 'MELO3C017900.2' => 'cme', 'MELO3C023401.2' => 'cme', 'MELO3C026642.2' => 'cme', 'Migut.J01181' => 'egut', 'Migut.K00463' => 'egut', 'Migut.K00472' => 'egut', 'MSTRG.11772' => 'ama', 'MSTRG.19608' => 'ama', 'MSTRG.25849' => 'ama', 'MSTRG.6066' => 'ama', 'Nitab4.5_0000151g0010' => 'nta', 'Nitab4.5_0003558g0030' => 'nta', 'Nitab4.5_0003558g0070' => 'nta', 'Nitab4.5_0003558g0080' => 'nta', 'Nitab4.5_0003558g0090' => 'nta', 'Nitab4.5_0004501g0010' => 'nta', 'Nitab4.5_0005563g0020' => 'nta', 'Nitab4.5_0005563g0030' => 'nta', 'Nitab4.5_0005563g0040' => 'nta', 'Nn8g39385' => 'nnu', 'Oeu020100.1' => 'oeu', 'Oeu022127.1' => 'oeu', 'Oeu030208.1' => 'oeu', 'Oeu034107.1' => 'oeu', 'Oeu045333.1' => 'oeu', 'Oeu058055.1' => 'oeu', 'Os01g0555100' => 'osa', 'Os02g0203700' => 'osa', 'Os06g0141200' => 'osa', 'Peaxi162Scf00341g00012' => 'pax', 'Peaxi162Scf00641g00018' => 'pax', 'Peaxi162Scf00984g00119' => 'pax', 'Peaxi162Scf00984g10021' => 'pax', 'PGR031G0194' => 'pgr', 'PGR031G3637' => 'pgr', 'PGR142G1478' => 'pgr', 'PGSC0003DMG400007381' => 'stu', 'PGSC0003DMG400007852' => 'stu', 'PGSC0003DMG401020664' => 'stu', 'PGSC0003DMG402020664' => 'stu', 'Phvul.003G162400' => 'pvu', 'Phvul.003G162500' => 'pvu', 'Phvul.005G175000' => 'pvu', 'Phvul.009G094900' => 'pvu', 'Phvul.009G198300' => 'pvu', 'Phvul.010G153700' => 'pvu', 'Potri.001G172700' => 'ptr', 'Potri.003G061300' => 'ptr', 'Potri.006G149900' => 'ptr', 'Potri.006G251300' => 'ptr', 'Potri.018G029900' => 'ptr', 'Potri.018G066900' => 'ptr', 'PRCOL_00004617' => 'pco', 'Prupe.1G474600' => 'ppe', 'Prupe.3G080000' => 'ppe', 'Prupe.7G239400' => 'ppe', 'Psat0s3001g0040' => 'psa', 'Psat1g026920' => 'psa', 'Psat4g041680' => 'psa', 'Psat7g255600' => 'psa', 'PSO170G3356' => 'pso', 'PSO210G2060' => 'pso', 'PSO210G5966' => 'pso', 'PSO455G0132' => 'pso', 'QL02p022388' => 'qlo', 'QL02p087744' => 'qlo', 'QL05p027843' => 'qlo', 'RcHm_v2.0_Chr2g0136561' => 'rch', 'RcHm_v2.0_Chr6g0298401' => 'rch', 'Rhsim01G0007400' => 'rsi', 'Rhsim01G0007600' => 'rsi', 'Rhsim01G0076900' => 'rsi', 'Rhsim02G0195300' => 'rsi', 'Rhsim02G0196500' => 'rsi', 'Rhsim11G0119300' => 'rsi', 'Sabra03G0035600' => 'sbr', 'Sabra06G0118600' => 'sbr', 'Sabra06G0196400' => 'sbr', 'Sabra18G0031700' => 'sbr', 'Sabra18G0060000' => 'sbr', 'Sc18g0000730' => 'sci', 'Sed0001195' => 'sed', 'Sed0001713' => 'sed', 'Sed0004083' => 'sed', 'Sed0010705' => 'sed', 'Sed0021606' => 'sed', 'Sed0024738' => 'sed', 'Sed0025918' => 'sed', 'SGA_v2.0_scaffold1093G53838' => 'sas', 'SGA_v2.0_scaffold45G17067' => 'sas', 'SHI18574' => 'shi', 'SMO164G0137' => 'smo', 'SMO329G0042' => 'smo', 'Solyc08g067180.4' => 'sly', 'Solyc12g006590.3' => 'sly', 'Solyc12g006600.3' => 'sly', 'Solyc12g011060.3' => 'sly', 'Sopen08g021120' => 'spe', 'Sopen12g002540' => 'spe', 'Sopen12g002550' => 'spe', 'Sopen12g006430' => 'spe', 'Sp2g22040' => 'spa', 'Sp3g13980' => 'spa', 'Sp4g08900' => 'spa', 'TAR383G0790' => 'tar', 'TAR625G0543' => 'tar', 'TAR636G1357' => 'tar', 'TAR636G1593' => 'tar', 'TAR636G2046' => 'tar', 'THA.LOC104799705' => 'tha', 'THA.LOC104809001' => 'tha', 'THA.LOC104810500' => 'tha', 'THA.LOC104818036' => 'tha', 'THA.LOC104826539' => 'tha', 'Thecc.06G072500' => 'tca', 'Thecc.09G122800' => 'tca', 'Thecc.09G149700' => 'tca', 'Thhalv10005026m.g' => 'esa', 'Thhalv10017402m.g' => 'esa', 'Thhalv10021670m.g' => 'esa', 'TPR.G10349' => 'tpr', 'TPR.G10709' => 'tpr', 'TPR.G31764' => 'tpr', 'TPR.G38630' => 'tpr', 'TWI12G0810' => 'twi', 'TWI34G0224' => 'twi', 'TWI34G1607' => 'twi', 'TWI63G0584' => 'twi', 'TWI63G1484' => 'twi', 'TWI75G1763' => 'twi', 'unitig_32.g11666' => 'ugi', 'unitig_748.g7149' => 'ugi', 'unitig_748.g7371' => 'ugi', 'vmacro05191' => 'vma', 'vmacro06176' => 'vma', 'vmacro11151' => 'vma', 'vmacro13104' => 'vma', 'vmacro23135' => 'vma', 'VMungo0331G1537' => 'vmu', 'VMungo1215G0495' => 'vmu', 'VMungo1215G2977' => 'vmu', 'VMungo1309G0321' => 'vmu', 'VMungo1309G1359' => 'vmu', 'Zm00001eb205550' => 'zma', 'Zm00001eb235450' => 'zma', 'Zm00001eb356350' => 'zma', 'Zm00001eb377420' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001564' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001564' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001564' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001564' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001564', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '408', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p38410' => 'bna', 'A02p39710' => 'bna', 'A03p39440' => 'bna', 'A06p36200' => 'bna', 'A07p17810' => 'bna', 'Aa31LG11G4840' => 'aar', 'Aa31LG5G9070' => 'aar', 'Aa31LG8G2880' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.205' => 'aag', 'Actinidia07435' => 'ach', 'Actinidia22005' => 'ach', 'Actinidia26404' => 'ach', 'Actinidia40452' => 'ach', 'Ah.09g225790' => 'amhyb', 'Ah.09g225800' => 'amhyb', 'Ah.10g026320' => 'amhyb', 'Ah.12g064030' => 'amhyb', 'Ah.14g080630' => 'amhyb', 'AL3G28340' => 'aly', 'AL4G19730' => 'aly', 'AL6G37290' => 'aly', 'Aqoxy7G02086' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2YFD5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81V95F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CN67L5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2CVAQ' => 'arhy', 'AT2G26695' => 'ath', 'AT3G15680' => 'ath', 'AT5G25490' => 'ath', 'Atru.chr1.3091' => 'acertr', 'Atru.chr7.1191' => 'acertr', 'Atru.chr7.1193' => 'acertr', 'Atru.chr7.2384' => 'acertr', 'AUR62011084' => 'cqu', 'AUR62011085' => 'cqu', 'AUR62024886' => 'cqu', 'AUR62030661' => 'cqu', 'AUR62033466' => 'cqu', 'AUR62033467' => 'cqu', 'BcaB04g20907' => 'bca', 'BcaB07g29995' => 'bca', 'BcaC01g03860' => 'bca', 'BcaC01g03861' => 'bca', 'BcaC01g03862' => 'bca', 'BcaC02g10834' => 'bca', 'BcaC09g48549' => 'bca', 'BcaNung07111' => 'bca', 'BolC1t04827H' => 'bol', 'BolC2t12012H' => 'bol', 'BolC3t17061H' => 'bol', 'BolC4t23970H' => 'bol', 'BolC7t44762H' => 'bol', 'BraA01t03891Z' => 'bra', 'BraA02t08936Z' => 'bra', 'BraA03t13094Z' => 'bra', 'BraA06t26541Z' => 'bra', 'BraA07t29501Z' => 'bra', 'C01p48720' => 'bna', 'C02p59490' => 'bna', 'C03p47830' => 'bna', 'C04p24640' => 'bna', 'C07p42330' => 'bna', 'CAN.G348.2' => 'can', 'CAN.G377.4' => 'can', 'CAN.G377.5' => 'can', 'CANSAT11G0701' => 'cansat', 'CANSAT56G0615' => 'cansat', 'CARHR090770' => 'chi', 'CARHR118750' => 'chi', 'CARHR187900' => 'chi', 'Carub.0003s1543' => 'cru', 'Carub.0004s0700' => 'cru', 'Carub.0006s2335' => 'cru', 'Ca_02445_v3' => 'car', 'Ca_15722_v3' => 'car', 'Ca_20426_v3' => 'car', 'Ca_21698_v3' => 'car', 'CBR_g38837' => 'cbr', 'Cc06_g08810' => 'ccan', 'Cc11_g01930' => 'ccan', 'CDE04G2147' => 'cde', 'Cfa002010' => 'cfa', 'Cfa003344' => 'cfa', 'Cfa023651' => 'cfa', 'Ciclev10009760m.g' => 'ccl', 'Ciclev10009893m.g' => 'ccl', 'Ciclev10026703m.g' => 'ccl', 'CiPaw.01G244500' => 'cil', 'CiPaw.02G154900' => 'cil', 'CiPaw.03G241500' => 'cil', 'CiPaw.04G170100' => 'cil', 'CiPaw.07G221200' => 'cil', 'CiPaw.08G012900' => 'cil', 'ClCG06G010900' => 'cla', 'ClCG07G012800' => 'cla', 'ClCG08G013170' => 'cla', 'ClCG11G002870' => 'cla', 'COL.COLO4_05759' => 'col', 'COL.COLO4_12897' => 'col', 'COL.COLO4_23975' => 'col', 'COL.COLO4_25495' => 'col', 'Cpa.g.sc115.12' => 'cpa', 'Cpa.g.sc336.9' => 'cpa', 'Cpa.g.sc75.58' => 'cpa', 'CsaV3_1G029820' => 'csa', 'CsaV3_2G002710' => 'csa', 'CsaV3_2G031890' => 'csa', 'CsaV3_4G001400' => 'csa', 'CSS0003314' => 'camsi', 'CSS0017404' => 'camsi', 'CSS0026256' => 'camsi', 'CSS0030088' => 'camsi', 'CSS0030555' => 'camsi', 'CSS0036181' => 'camsi', 'CSS0037183' => 'camsi', 'CSS0039712' => 'camsi', 'CSS0040547' => 'camsi', 'CSS0040777' => 'camsi', 'CSS0049275' => 'camsi', 'DCAR_003041' => 'dca', 'DCAR_009202' => 'dca', 'DCAR_009203' => 'dca', 'DCAR_014864' => 'dca', 'DCAR_017833' => 'dca', 'Dinv11624' => 'din', 'Dinv36550' => 'din', 'Dinv36551' => 'din', 'Dinv41533' => 'din', 'Duzib150G1447' => 'dzi', 'Duzib160G0303' => 'dzi', 'Duzib168G1240' => 'dzi', 'Duzib168G1983' => 'dzi', 'Duzib187G0397' => 'dzi', 'Duzib187G0642' => 'dzi', 'Duzib192G0024' => 'dzi', 'Duzib192G0968' => 'dzi', 'Duzib235G0157' => 'dzi', 'ECA233G4471' => 'eca', 'ECA234G0565' => 'eca', 'ECA234G0849' => 'eca', 'EL10Ac2g02598' => 'bvu', 'EL10Ac8g18609' => 'bvu', 'EL10Ac8g18610' => 'bvu', 'Eucgr.C01126' => 'egr', 'Eucgr.C01132' => 'egr', 'Eucgr.C01779' => 'egr', 'Eucgr.C02807' => 'egr', 'Eucgr.F02548' => 'egr', 'Eucgr.L00288' => 'egr', 'Eucgr.L00295' => 'egr', 'FAN02G4335' => 'fan', 'FAN05G3054' => 'fan', 'FAN09G2896' => 'fan', 'FAN14G1205' => 'fan', 'FAN15G3262' => 'fan', 'FAN19G1352' => 'fan', 'FAN20G2165' => 'fan', 'FAN23G1583' => 'fan', 'FAN24G1530' => 'fan', 'FAN26G3103' => 'fan', 'FAN27G2421' => 'fan', 'FAN28G0859' => 'fan', 'FvH4_1g03630' => 'fve', 'FvH4_2g29540' => 'fve', 'FvH4_6g30320' => 'fve', 'Glyma.02G196600' => 'gma', 'Glyma.04G068400' => 'gma', 'Glyma.05G008600' => 'gma', 'Glyma.05G008700' => 'gma', 'Glyma.06G069900' => 'gma', 'Glyma.06G216600' => 'gma', 'Glyma.07G032300' => 'gma', 'Glyma.08G210200' => 'gma', 'Glyma.17G116800' => 'gma', 'Glyma.17G116900' => 'gma', 'Gohir.A05G009300' => 'ghi', 'Gohir.A05G018000' => 'ghi', 'Gohir.A05G125100' => 'ghi', 'Gohir.A06G057400' => 'ghi', 'Gohir.A06G186900' => 'ghi', 'Gohir.A13G199000' => 'ghi', 'Gohir.D05G010000' => 'ghi', 'Gohir.D05G018900' => 'ghi', 'Gohir.D05G126100' => 'ghi', 'Gohir.D06G055700' => 'ghi', 'Gohir.D06G193100' => 'ghi', 'Gohir.D13G204400' => 'ghi', 'Gorai.009G010300' => 'gra', 'Gorai.009G019300' => 'gra', 'Gorai.009G130100' => 'gra', 'Gorai.010G065000' => 'gra', 'Gorai.010G227000' => 'gra', 'Gorai.013G233200' => 'gra', 'GSVIVG01015499001' => 'vvi', 'GSVIVG01017252001' => 'vvi', 'GSVIVG01035819001' => 'vvi', 'HanXRQChr01g0031111' => 'han', 'HanXRQChr02g0050811' => 'han', 'HanXRQChr10g0316651' => 'han', 'HanXRQChr10g0316661' => 'han', 'HanXRQChr12g0356401' => 'han', 'HanXRQChr12g0356421' => 'han', 'HanXRQChr12g0356431' => 'han', 'HanXRQChr13g0402691' => 'han', 'Haze_16514' => 'cav', 'Haze_21557' => 'cav', 'Hma1.2p1_0665F.1_g199180' => 'hma', 'HPP92_008654' => 'vpl', 'HPP92_023168' => 'vpl', 'HPP92_024604' => 'vpl', 'Hund03022' => 'sun', 'Hund09145' => 'sun', 'Hund09146' => 'sun', 'Hund26485' => 'sun', 'Hund26490' => 'sun', 'Lalb_Chr04g0262471' => 'lal', 'Lalb_Chr07g0178781' => 'lal', 'Lalb_Chr08g0243981' => 'lal', 'Lalb_Chr11g0063821' => 'lal', 'Lalb_Chr13g0301981' => 'lal', 'Lalb_Chr14g0373691' => 'lal', 'Lalb_Chr19g0135021' => 'lal', 'Lj1g0016866' => 'lja', 'Lj3g0007786' => 'lja', 'Lj4C463T2' => 'lonja', 'Lj4g0004155' => 'lja', 'Lj6g0008040' => 'lja', 'Lj7A719T41' => 'lonja', 'Lj8C624T10' => 'lonja', 'Lsat_1_v5_gn_5_31741' => 'lsa', 'Lsat_1_v5_gn_5_98101' => 'lsa', 'Lsat_1_v5_gn_5_98121' => 'lsa', 'Lsat_1_v5_gn_6_22340' => 'lsa', 'Lsat_1_v5_gn_8_57381' => 'lsa', 'Manes.03G017100' => 'mes', 'Manes.04G116400' => 'mes', 'Manes.06G050100' => 'mes', 'Manes.11G052700' => 'mes', 'Manes.14G130000' => 'mes', 'Manes.14G130300' => 'mes', 'Manes.16G120000' => 'mes', 'Mapoly0019s0131' => 'mpo', 'MBI04_g19548_MAGBIO' => 'mbi', 'MBI04_g30115_MAGBIO' => 'mbi', 'MCO05G332' => 'mco', 'MCO13G454' => 'mco', 'MCO14G117' => 'mco', 'MCO15G280' => 'mco', 'MCO16G458' => 'mco', 'MD02G1035800' => 'mdo', 'MD08G1146100' => 'mdo', 'MD09G1220800' => 'mdo', 'MD15G1121500' => 'mdo', 'MD15G1176000' => 'mdo', 'MD17G1204500' => 'mdo', 'Medtr2g054750' => 'mtr', 'Medtr3g107610' => 'mtr', 'Medtr4g011190' => 'mtr', 'Medtr4g113840' => 'mtr', 'MELO3C004523.2' => 'cme', 'MELO3C011238.2' => 'cme', 'MELO3C017900.2' => 'cme', 'MELO3C023401.2' => 'cme', 'MELO3C026642.2' => 'cme', 'Migut.J01181' => 'egut', 'Migut.K00463' => 'egut', 'Migut.K00472' => 'egut', 'MSTRG.11772' => 'ama', 'MSTRG.19608' => 'ama', 'MSTRG.25849' => 'ama', 'MSTRG.6066' => 'ama', 'Nitab4.5_0000151g0010' => 'nta', 'Nitab4.5_0003558g0030' => 'nta', 'Nitab4.5_0003558g0070' => 'nta', 'Nitab4.5_0003558g0080' => 'nta', 'Nitab4.5_0003558g0090' => 'nta', 'Nitab4.5_0004501g0010' => 'nta', 'Nitab4.5_0005563g0020' => 'nta', 'Nitab4.5_0005563g0030' => 'nta', 'Nitab4.5_0005563g0040' => 'nta', 'Nn8g39385' => 'nnu', 'Oeu020100.1' => 'oeu', 'Oeu022127.1' => 'oeu', 'Oeu030208.1' => 'oeu', 'Oeu034107.1' => 'oeu', 'Oeu045333.1' => 'oeu', 'Oeu058055.1' => 'oeu', 'Os01g0555100' => 'osa', 'Os02g0203700' => 'osa', 'Os06g0141200' => 'osa', 'Peaxi162Scf00341g00012' => 'pax', 'Peaxi162Scf00641g00018' => 'pax', 'Peaxi162Scf00984g00119' => 'pax', 'Peaxi162Scf00984g10021' => 'pax', 'PGR031G0194' => 'pgr', 'PGR031G3637' => 'pgr', 'PGR142G1478' => 'pgr', 'PGSC0003DMG400007381' => 'stu', 'PGSC0003DMG400007852' => 'stu', 'PGSC0003DMG401020664' => 'stu', 'PGSC0003DMG402020664' => 'stu', 'Phvul.003G162400' => 'pvu', 'Phvul.003G162500' => 'pvu', 'Phvul.005G175000' => 'pvu', 'Phvul.009G094900' => 'pvu', 'Phvul.009G198300' => 'pvu', 'Phvul.010G153700' => 'pvu', 'Potri.001G172700' => 'ptr', 'Potri.003G061300' => 'ptr', 'Potri.006G149900' => 'ptr', 'Potri.006G251300' => 'ptr', 'Potri.018G029900' => 'ptr', 'Potri.018G066900' => 'ptr', 'PRCOL_00004617' => 'pco', 'Prupe.1G474600' => 'ppe', 'Prupe.3G080000' => 'ppe', 'Prupe.7G239400' => 'ppe', 'Psat0s3001g0040' => 'psa', 'Psat1g026920' => 'psa', 'Psat4g041680' => 'psa', 'Psat7g255600' => 'psa', 'PSO170G3356' => 'pso', 'PSO210G2060' => 'pso', 'PSO210G5966' => 'pso', 'PSO455G0132' => 'pso', 'QL02p022388' => 'qlo', 'QL02p087744' => 'qlo', 'QL05p027843' => 'qlo', 'RcHm_v2.0_Chr2g0136561' => 'rch', 'RcHm_v2.0_Chr6g0298401' => 'rch', 'Rhsim01G0007400' => 'rsi', 'Rhsim01G0007600' => 'rsi', 'Rhsim01G0076900' => 'rsi', 'Rhsim02G0195300' => 'rsi', 'Rhsim02G0196500' => 'rsi', 'Rhsim11G0119300' => 'rsi', 'Sabra03G0035600' => 'sbr', 'Sabra06G0118600' => 'sbr', 'Sabra06G0196400' => 'sbr', 'Sabra18G0031700' => 'sbr', 'Sabra18G0060000' => 'sbr', 'Sc18g0000730' => 'sci', 'Sed0001195' => 'sed', 'Sed0001713' => 'sed', 'Sed0004083' => 'sed', 'Sed0010705' => 'sed', 'Sed0021606' => 'sed', 'Sed0024738' => 'sed', 'Sed0025918' => 'sed', 'SGA_v2.0_scaffold1093G53838' => 'sas', 'SGA_v2.0_scaffold45G17067' => 'sas', 'SHI18574' => 'shi', 'SMO164G0137' => 'smo', 'SMO329G0042' => 'smo', 'Solyc08g067180.4' => 'sly', 'Solyc12g006590.3' => 'sly', 'Solyc12g006600.3' => 'sly', 'Solyc12g011060.3' => 'sly', 'Sopen08g021120' => 'spe', 'Sopen12g002540' => 'spe', 'Sopen12g002550' => 'spe', 'Sopen12g006430' => 'spe', 'Sp2g22040' => 'spa', 'Sp3g13980' => 'spa', 'Sp4g08900' => 'spa', 'TAR383G0790' => 'tar', 'TAR625G0543' => 'tar', 'TAR636G1357' => 'tar', 'TAR636G1593' => 'tar', 'TAR636G2046' => 'tar', 'THA.LOC104799705' => 'tha', 'THA.LOC104809001' => 'tha', 'THA.LOC104810500' => 'tha', 'THA.LOC104818036' => 'tha', 'THA.LOC104826539' => 'tha', 'Thecc.06G072500' => 'tca', 'Thecc.09G122800' => 'tca', 'Thecc.09G149700' => 'tca', 'Thhalv10005026m.g' => 'esa', 'Thhalv10017402m.g' => 'esa', 'Thhalv10021670m.g' => 'esa', 'TPR.G10349' => 'tpr', 'TPR.G10709' => 'tpr', 'TPR.G31764' => 'tpr', 'TPR.G38630' => 'tpr', 'TWI12G0810' => 'twi', 'TWI34G0224' => 'twi', 'TWI34G1607' => 'twi', 'TWI63G0584' => 'twi', 'TWI63G1484' => 'twi', 'TWI75G1763' => 'twi', 'unitig_32.g11666' => 'ugi', 'unitig_748.g7149' => 'ugi', 'unitig_748.g7371' => 'ugi', 'vmacro05191' => 'vma', 'vmacro06176' => 'vma', 'vmacro11151' => 'vma', 'vmacro13104' => 'vma', 'vmacro23135' => 'vma', 'VMungo0331G1537' => 'vmu', 'VMungo1215G0495' => 'vmu', 'VMungo1215G2977' => 'vmu', 'VMungo1309G0321' => 'vmu', 'VMungo1309G1359' => 'vmu', 'Zm00001eb205550' => 'zma', 'Zm00001eb235450' => 'zma', 'Zm00001eb356350' => 'zma', 'Zm00001eb377420' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001564', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001564' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001564', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '408', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001564' ) ), 'genes' => array( 'A01p38410' => 'bna', 'A02p39710' => 'bna', 'A03p39440' => 'bna', 'A06p36200' => 'bna', 'A07p17810' => 'bna', 'Aa31LG11G4840' => 'aar', 'Aa31LG5G9070' => 'aar', 'Aa31LG8G2880' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.205' => 'aag', 'Actinidia07435' => 'ach', 'Actinidia22005' => 'ach', 'Actinidia26404' => 'ach', 'Actinidia40452' => 'ach', 'Ah.09g225790' => 'amhyb', 'Ah.09g225800' => 'amhyb', 'Ah.10g026320' => 'amhyb', 'Ah.12g064030' => 'amhyb', 'Ah.14g080630' => 'amhyb', 'AL3G28340' => 'aly', 'AL4G19730' => 'aly', 'AL6G37290' => 'aly', 'Aqoxy7G02086' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2YFD5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81V95F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CN67L5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2CVAQ' => 'arhy', 'AT2G26695' => 'ath', 'AT3G15680' => 'ath', 'AT5G25490' => 'ath', 'Atru.chr1.3091' => 'acertr', 'Atru.chr7.1191' => 'acertr', 'Atru.chr7.1193' => 'acertr', 'Atru.chr7.2384' => 'acertr', 'AUR62011084' => 'cqu', 'AUR62011085' => 'cqu', 'AUR62024886' => 'cqu', 'AUR62030661' => 'cqu', 'AUR62033466' => 'cqu', 'AUR62033467' => 'cqu', 'BcaB04g20907' => 'bca', 'BcaB07g29995' => 'bca', 'BcaC01g03860' => 'bca', 'BcaC01g03861' => 'bca', 'BcaC01g03862' => 'bca', 'BcaC02g10834' => 'bca', 'BcaC09g48549' => 'bca', 'BcaNung07111' => 'bca', 'BolC1t04827H' => 'bol', 'BolC2t12012H' => 'bol', 'BolC3t17061H' => 'bol', 'BolC4t23970H' => 'bol', 'BolC7t44762H' => 'bol', 'BraA01t03891Z' => 'bra', 'BraA02t08936Z' => 'bra', 'BraA03t13094Z' => 'bra', 'BraA06t26541Z' => 'bra', 'BraA07t29501Z' => 'bra', 'C01p48720' => 'bna', 'C02p59490' => 'bna', 'C03p47830' => 'bna', 'C04p24640' => 'bna', 'C07p42330' => 'bna', 'CAN.G348.2' => 'can', 'CAN.G377.4' => 'can', 'CAN.G377.5' => 'can', 'CANSAT11G0701' => 'cansat', 'CANSAT56G0615' => 'cansat', 'CARHR090770' => 'chi', 'CARHR118750' => 'chi', 'CARHR187900' => 'chi', 'Carub.0003s1543' => 'cru', 'Carub.0004s0700' => 'cru', 'Carub.0006s2335' => 'cru', 'Ca_02445_v3' => 'car', 'Ca_15722_v3' => 'car', 'Ca_20426_v3' => 'car', 'Ca_21698_v3' => 'car', 'CBR_g38837' => 'cbr', 'Cc06_g08810' => 'ccan', 'Cc11_g01930' => 'ccan', 'CDE04G2147' => 'cde', 'Cfa002010' => 'cfa', 'Cfa003344' => 'cfa', 'Cfa023651' => 'cfa', 'Ciclev10009760m.g' => 'ccl', 'Ciclev10009893m.g' => 'ccl', 'Ciclev10026703m.g' => 'ccl', 'CiPaw.01G244500' => 'cil', 'CiPaw.02G154900' => 'cil', 'CiPaw.03G241500' => 'cil', 'CiPaw.04G170100' => 'cil', 'CiPaw.07G221200' => 'cil', 'CiPaw.08G012900' => 'cil', 'ClCG06G010900' => 'cla', 'ClCG07G012800' => 'cla', 'ClCG08G013170' => 'cla', 'ClCG11G002870' => 'cla', 'COL.COLO4_05759' => 'col', 'COL.COLO4_12897' => 'col', 'COL.COLO4_23975' => 'col', 'COL.COLO4_25495' => 'col', 'Cpa.g.sc115.12' => 'cpa', 'Cpa.g.sc336.9' => 'cpa', 'Cpa.g.sc75.58' => 'cpa', 'CsaV3_1G029820' => 'csa', 'CsaV3_2G002710' => 'csa', 'CsaV3_2G031890' => 'csa', 'CsaV3_4G001400' => 'csa', 'CSS0003314' => 'camsi', 'CSS0017404' => 'camsi', 'CSS0026256' => 'camsi', 'CSS0030088' => 'camsi', 'CSS0030555' => 'camsi', 'CSS0036181' => 'camsi', 'CSS0037183' => 'camsi', 'CSS0039712' => 'camsi', 'CSS0040547' => 'camsi', 'CSS0040777' => 'camsi', 'CSS0049275' => 'camsi', 'DCAR_003041' => 'dca', 'DCAR_009202' => 'dca', 'DCAR_009203' => 'dca', 'DCAR_014864' => 'dca', 'DCAR_017833' => 'dca', 'Dinv11624' => 'din', 'Dinv36550' => 'din', 'Dinv36551' => 'din', 'Dinv41533' => 'din', 'Duzib150G1447' => 'dzi', 'Duzib160G0303' => 'dzi', 'Duzib168G1240' => 'dzi', 'Duzib168G1983' => 'dzi', 'Duzib187G0397' => 'dzi', 'Duzib187G0642' => 'dzi', 'Duzib192G0024' => 'dzi', 'Duzib192G0968' => 'dzi', 'Duzib235G0157' => 'dzi', 'ECA233G4471' => 'eca', 'ECA234G0565' => 'eca', 'ECA234G0849' => 'eca', 'EL10Ac2g02598' => 'bvu', 'EL10Ac8g18609' => 'bvu', 'EL10Ac8g18610' => 'bvu', 'Eucgr.C01126' => 'egr', 'Eucgr.C01132' => 'egr', 'Eucgr.C01779' => 'egr', 'Eucgr.C02807' => 'egr', 'Eucgr.F02548' => 'egr', 'Eucgr.L00288' => 'egr', 'Eucgr.L00295' => 'egr', 'FAN02G4335' => 'fan', 'FAN05G3054' => 'fan', 'FAN09G2896' => 'fan', 'FAN14G1205' => 'fan', 'FAN15G3262' => 'fan', 'FAN19G1352' => 'fan', 'FAN20G2165' => 'fan', 'FAN23G1583' => 'fan', 'FAN24G1530' => 'fan', 'FAN26G3103' => 'fan', 'FAN27G2421' => 'fan', 'FAN28G0859' => 'fan', 'FvH4_1g03630' => 'fve', 'FvH4_2g29540' => 'fve', 'FvH4_6g30320' => 'fve', 'Glyma.02G196600' => 'gma', 'Glyma.04G068400' => 'gma', 'Glyma.05G008600' => 'gma', 'Glyma.05G008700' => 'gma', 'Glyma.06G069900' => 'gma', 'Glyma.06G216600' => 'gma', 'Glyma.07G032300' => 'gma', 'Glyma.08G210200' => 'gma', 'Glyma.17G116800' => 'gma', 'Glyma.17G116900' => 'gma', 'Gohir.A05G009300' => 'ghi', 'Gohir.A05G018000' => 'ghi', 'Gohir.A05G125100' => 'ghi', 'Gohir.A06G057400' => 'ghi', 'Gohir.A06G186900' => 'ghi', 'Gohir.A13G199000' => 'ghi', 'Gohir.D05G010000' => 'ghi', 'Gohir.D05G018900' => 'ghi', 'Gohir.D05G126100' => 'ghi', 'Gohir.D06G055700' => 'ghi', 'Gohir.D06G193100' => 'ghi', 'Gohir.D13G204400' => 'ghi', 'Gorai.009G010300' => 'gra', 'Gorai.009G019300' => 'gra', 'Gorai.009G130100' => 'gra', 'Gorai.010G065000' => 'gra', 'Gorai.010G227000' => 'gra', 'Gorai.013G233200' => 'gra', 'GSVIVG01015499001' => 'vvi', 'GSVIVG01017252001' => 'vvi', 'GSVIVG01035819001' => 'vvi', 'HanXRQChr01g0031111' => 'han', 'HanXRQChr02g0050811' => 'han', 'HanXRQChr10g0316651' => 'han', 'HanXRQChr10g0316661' => 'han', 'HanXRQChr12g0356401' => 'han', 'HanXRQChr12g0356421' => 'han', 'HanXRQChr12g0356431' => 'han', 'HanXRQChr13g0402691' => 'han', 'Haze_16514' => 'cav', 'Haze_21557' => 'cav', 'Hma1.2p1_0665F.1_g199180' => 'hma', 'HPP92_008654' => 'vpl', 'HPP92_023168' => 'vpl', 'HPP92_024604' => 'vpl', 'Hund03022' => 'sun', 'Hund09145' => 'sun', 'Hund09146' => 'sun', 'Hund26485' => 'sun', 'Hund26490' => 'sun', 'Lalb_Chr04g0262471' => 'lal', 'Lalb_Chr07g0178781' => 'lal', 'Lalb_Chr08g0243981' => 'lal', 'Lalb_Chr11g0063821' => 'lal', 'Lalb_Chr13g0301981' => 'lal', 'Lalb_Chr14g0373691' => 'lal', 'Lalb_Chr19g0135021' => 'lal', 'Lj1g0016866' => 'lja', 'Lj3g0007786' => 'lja', 'Lj4C463T2' => 'lonja', 'Lj4g0004155' => 'lja', 'Lj6g0008040' => 'lja', 'Lj7A719T41' => 'lonja', 'Lj8C624T10' => 'lonja', 'Lsat_1_v5_gn_5_31741' => 'lsa', 'Lsat_1_v5_gn_5_98101' => 'lsa', 'Lsat_1_v5_gn_5_98121' => 'lsa', 'Lsat_1_v5_gn_6_22340' => 'lsa', 'Lsat_1_v5_gn_8_57381' => 'lsa', 'Manes.03G017100' => 'mes', 'Manes.04G116400' => 'mes', 'Manes.06G050100' => 'mes', 'Manes.11G052700' => 'mes', 'Manes.14G130000' => 'mes', 'Manes.14G130300' => 'mes', 'Manes.16G120000' => 'mes', 'Mapoly0019s0131' => 'mpo', 'MBI04_g19548_MAGBIO' => 'mbi', 'MBI04_g30115_MAGBIO' => 'mbi', 'MCO05G332' => 'mco', 'MCO13G454' => 'mco', 'MCO14G117' => 'mco', 'MCO15G280' => 'mco', 'MCO16G458' => 'mco', 'MD02G1035800' => 'mdo', 'MD08G1146100' => 'mdo', 'MD09G1220800' => 'mdo', 'MD15G1121500' => 'mdo', 'MD15G1176000' => 'mdo', 'MD17G1204500' => 'mdo', 'Medtr2g054750' => 'mtr', 'Medtr3g107610' => 'mtr', 'Medtr4g011190' => 'mtr', 'Medtr4g113840' => 'mtr', 'MELO3C004523.2' => 'cme', 'MELO3C011238.2' => 'cme', 'MELO3C017900.2' => 'cme', 'MELO3C023401.2' => 'cme', 'MELO3C026642.2' => 'cme', 'Migut.J01181' => 'egut', 'Migut.K00463' => 'egut', 'Migut.K00472' => 'egut', 'MSTRG.11772' => 'ama', 'MSTRG.19608' => 'ama', 'MSTRG.25849' => 'ama', 'MSTRG.6066' => 'ama', 'Nitab4.5_0000151g0010' => 'nta', 'Nitab4.5_0003558g0030' => 'nta', 'Nitab4.5_0003558g0070' => 'nta', 'Nitab4.5_0003558g0080' => 'nta', 'Nitab4.5_0003558g0090' => 'nta', 'Nitab4.5_0004501g0010' => 'nta', 'Nitab4.5_0005563g0020' => 'nta', 'Nitab4.5_0005563g0030' => 'nta', 'Nitab4.5_0005563g0040' => 'nta', 'Nn8g39385' => 'nnu', 'Oeu020100.1' => 'oeu', 'Oeu022127.1' => 'oeu', 'Oeu030208.1' => 'oeu', 'Oeu034107.1' => 'oeu', 'Oeu045333.1' => 'oeu', 'Oeu058055.1' => 'oeu', 'Os01g0555100' => 'osa', 'Os02g0203700' => 'osa', 'Os06g0141200' => 'osa', 'Peaxi162Scf00341g00012' => 'pax', 'Peaxi162Scf00641g00018' => 'pax', 'Peaxi162Scf00984g00119' => 'pax', 'Peaxi162Scf00984g10021' => 'pax', 'PGR031G0194' => 'pgr', 'PGR031G3637' => 'pgr', 'PGR142G1478' => 'pgr', 'PGSC0003DMG400007381' => 'stu', 'PGSC0003DMG400007852' => 'stu', 'PGSC0003DMG401020664' => 'stu', 'PGSC0003DMG402020664' => 'stu', 'Phvul.003G162400' => 'pvu', 'Phvul.003G162500' => 'pvu', 'Phvul.005G175000' => 'pvu', 'Phvul.009G094900' => 'pvu', 'Phvul.009G198300' => 'pvu', 'Phvul.010G153700' => 'pvu', 'Potri.001G172700' => 'ptr', 'Potri.003G061300' => 'ptr', 'Potri.006G149900' => 'ptr', 'Potri.006G251300' => 'ptr', 'Potri.018G029900' => 'ptr', 'Potri.018G066900' => 'ptr', 'PRCOL_00004617' => 'pco', 'Prupe.1G474600' => 'ppe', 'Prupe.3G080000' => 'ppe', 'Prupe.7G239400' => 'ppe', 'Psat0s3001g0040' => 'psa', 'Psat1g026920' => 'psa', 'Psat4g041680' => 'psa', 'Psat7g255600' => 'psa', 'PSO170G3356' => 'pso', 'PSO210G2060' => 'pso', 'PSO210G5966' => 'pso', 'PSO455G0132' => 'pso', 'QL02p022388' => 'qlo', 'QL02p087744' => 'qlo', 'QL05p027843' => 'qlo', 'RcHm_v2.0_Chr2g0136561' => 'rch', 'RcHm_v2.0_Chr6g0298401' => 'rch', 'Rhsim01G0007400' => 'rsi', 'Rhsim01G0007600' => 'rsi', 'Rhsim01G0076900' => 'rsi', 'Rhsim02G0195300' => 'rsi', 'Rhsim02G0196500' => 'rsi', 'Rhsim11G0119300' => 'rsi', 'Sabra03G0035600' => 'sbr', 'Sabra06G0118600' => 'sbr', 'Sabra06G0196400' => 'sbr', 'Sabra18G0031700' => 'sbr', 'Sabra18G0060000' => 'sbr', 'Sc18g0000730' => 'sci', 'Sed0001195' => 'sed', 'Sed0001713' => 'sed', 'Sed0004083' => 'sed', 'Sed0010705' => 'sed', 'Sed0021606' => 'sed', 'Sed0024738' => 'sed', 'Sed0025918' => 'sed', 'SGA_v2.0_scaffold1093G53838' => 'sas', 'SGA_v2.0_scaffold45G17067' => 'sas', 'SHI18574' => 'shi', 'SMO164G0137' => 'smo', 'SMO329G0042' => 'smo', 'Solyc08g067180.4' => 'sly', 'Solyc12g006590.3' => 'sly', 'Solyc12g006600.3' => 'sly', 'Solyc12g011060.3' => 'sly', 'Sopen08g021120' => 'spe', 'Sopen12g002540' => 'spe', 'Sopen12g002550' => 'spe', 'Sopen12g006430' => 'spe', 'Sp2g22040' => 'spa', 'Sp3g13980' => 'spa', 'Sp4g08900' => 'spa', 'TAR383G0790' => 'tar', 'TAR625G0543' => 'tar', 'TAR636G1357' => 'tar', 'TAR636G1593' => 'tar', 'TAR636G2046' => 'tar', 'THA.LOC104799705' => 'tha', 'THA.LOC104809001' => 'tha', 'THA.LOC104810500' => 'tha', 'THA.LOC104818036' => 'tha', 'THA.LOC104826539' => 'tha', 'Thecc.06G072500' => 'tca', 'Thecc.09G122800' => 'tca', 'Thecc.09G149700' => 'tca', 'Thhalv10005026m.g' => 'esa', 'Thhalv10017402m.g' => 'esa', 'Thhalv10021670m.g' => 'esa', 'TPR.G10349' => 'tpr', 'TPR.G10709' => 'tpr', 'TPR.G31764' => 'tpr', 'TPR.G38630' => 'tpr', 'TWI12G0810' => 'twi', 'TWI34G0224' => 'twi', 'TWI34G1607' => 'twi', 'TWI63G0584' => 'twi', 'TWI63G1484' => 'twi', 'TWI75G1763' => 'twi', 'unitig_32.g11666' => 'ugi', 'unitig_748.g7149' => 'ugi', 'unitig_748.g7371' => 'ugi', 'vmacro05191' => 'vma', 'vmacro06176' => 'vma', 'vmacro11151' => 'vma', 'vmacro13104' => 'vma', 'vmacro23135' => 'vma', 'VMungo0331G1537' => 'vmu', 'VMungo1215G0495' => 'vmu', 'VMungo1215G2977' => 'vmu', 'VMungo1309G0321' => 'vmu', 'VMungo1309G1359' => 'vmu', 'Zm00001eb205550' => 'zma', 'Zm00001eb235450' => 'zma', 'Zm00001eb356350' => 'zma', 'Zm00001eb377420' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001564' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001564' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001564' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001564' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001564', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '408', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p38410' => 'bna', 'A02p39710' => 'bna', 'A03p39440' => 'bna', 'A06p36200' => 'bna', 'A07p17810' => 'bna', 'Aa31LG11G4840' => 'aar', 'Aa31LG5G9070' => 'aar', 'Aa31LG8G2880' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.205' => 'aag', 'Actinidia07435' => 'ach', 'Actinidia22005' => 'ach', 'Actinidia26404' => 'ach', 'Actinidia40452' => 'ach', 'Ah.09g225790' => 'amhyb', 'Ah.09g225800' => 'amhyb', 'Ah.10g026320' => 'amhyb', 'Ah.12g064030' => 'amhyb', 'Ah.14g080630' => 'amhyb', 'AL3G28340' => 'aly', 'AL4G19730' => 'aly', 'AL6G37290' => 'aly', 'Aqoxy7G02086' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2YFD5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81V95F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CN67L5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2CVAQ' => 'arhy', 'AT2G26695' => 'ath', 'AT3G15680' => 'ath', 'AT5G25490' => 'ath', 'Atru.chr1.3091' => 'acertr', 'Atru.chr7.1191' => 'acertr', 'Atru.chr7.1193' => 'acertr', 'Atru.chr7.2384' => 'acertr', 'AUR62011084' => 'cqu', 'AUR62011085' => 'cqu', 'AUR62024886' => 'cqu', 'AUR62030661' => 'cqu', 'AUR62033466' => 'cqu', 'AUR62033467' => 'cqu', 'BcaB04g20907' => 'bca', 'BcaB07g29995' => 'bca', 'BcaC01g03860' => 'bca', 'BcaC01g03861' => 'bca', 'BcaC01g03862' => 'bca', 'BcaC02g10834' => 'bca', 'BcaC09g48549' => 'bca', 'BcaNung07111' => 'bca', 'BolC1t04827H' => 'bol', 'BolC2t12012H' => 'bol', 'BolC3t17061H' => 'bol', 'BolC4t23970H' => 'bol', 'BolC7t44762H' => 'bol', 'BraA01t03891Z' => 'bra', 'BraA02t08936Z' => 'bra', 'BraA03t13094Z' => 'bra', 'BraA06t26541Z' => 'bra', 'BraA07t29501Z' => 'bra', 'C01p48720' => 'bna', 'C02p59490' => 'bna', 'C03p47830' => 'bna', 'C04p24640' => 'bna', 'C07p42330' => 'bna', 'CAN.G348.2' => 'can', 'CAN.G377.4' => 'can', 'CAN.G377.5' => 'can', 'CANSAT11G0701' => 'cansat', 'CANSAT56G0615' => 'cansat', 'CARHR090770' => 'chi', 'CARHR118750' => 'chi', 'CARHR187900' => 'chi', 'Carub.0003s1543' => 'cru', 'Carub.0004s0700' => 'cru', 'Carub.0006s2335' => 'cru', 'Ca_02445_v3' => 'car', 'Ca_15722_v3' => 'car', 'Ca_20426_v3' => 'car', 'Ca_21698_v3' => 'car', 'CBR_g38837' => 'cbr', 'Cc06_g08810' => 'ccan', 'Cc11_g01930' => 'ccan', 'CDE04G2147' => 'cde', 'Cfa002010' => 'cfa', 'Cfa003344' => 'cfa', 'Cfa023651' => 'cfa', 'Ciclev10009760m.g' => 'ccl', 'Ciclev10009893m.g' => 'ccl', 'Ciclev10026703m.g' => 'ccl', 'CiPaw.01G244500' => 'cil', 'CiPaw.02G154900' => 'cil', 'CiPaw.03G241500' => 'cil', 'CiPaw.04G170100' => 'cil', 'CiPaw.07G221200' => 'cil', 'CiPaw.08G012900' => 'cil', 'ClCG06G010900' => 'cla', 'ClCG07G012800' => 'cla', 'ClCG08G013170' => 'cla', 'ClCG11G002870' => 'cla', 'COL.COLO4_05759' => 'col', 'COL.COLO4_12897' => 'col', 'COL.COLO4_23975' => 'col', 'COL.COLO4_25495' => 'col', 'Cpa.g.sc115.12' => 'cpa', 'Cpa.g.sc336.9' => 'cpa', 'Cpa.g.sc75.58' => 'cpa', 'CsaV3_1G029820' => 'csa', 'CsaV3_2G002710' => 'csa', 'CsaV3_2G031890' => 'csa', 'CsaV3_4G001400' => 'csa', 'CSS0003314' => 'camsi', 'CSS0017404' => 'camsi', 'CSS0026256' => 'camsi', 'CSS0030088' => 'camsi', 'CSS0030555' => 'camsi', 'CSS0036181' => 'camsi', 'CSS0037183' => 'camsi', 'CSS0039712' => 'camsi', 'CSS0040547' => 'camsi', 'CSS0040777' => 'camsi', 'CSS0049275' => 'camsi', 'DCAR_003041' => 'dca', 'DCAR_009202' => 'dca', 'DCAR_009203' => 'dca', 'DCAR_014864' => 'dca', 'DCAR_017833' => 'dca', 'Dinv11624' => 'din', 'Dinv36550' => 'din', 'Dinv36551' => 'din', 'Dinv41533' => 'din', 'Duzib150G1447' => 'dzi', 'Duzib160G0303' => 'dzi', 'Duzib168G1240' => 'dzi', 'Duzib168G1983' => 'dzi', 'Duzib187G0397' => 'dzi', 'Duzib187G0642' => 'dzi', 'Duzib192G0024' => 'dzi', 'Duzib192G0968' => 'dzi', 'Duzib235G0157' => 'dzi', 'ECA233G4471' => 'eca', 'ECA234G0565' => 'eca', 'ECA234G0849' => 'eca', 'EL10Ac2g02598' => 'bvu', 'EL10Ac8g18609' => 'bvu', 'EL10Ac8g18610' => 'bvu', 'Eucgr.C01126' => 'egr', 'Eucgr.C01132' => 'egr', 'Eucgr.C01779' => 'egr', 'Eucgr.C02807' => 'egr', 'Eucgr.F02548' => 'egr', 'Eucgr.L00288' => 'egr', 'Eucgr.L00295' => 'egr', 'FAN02G4335' => 'fan', 'FAN05G3054' => 'fan', 'FAN09G2896' => 'fan', 'FAN14G1205' => 'fan', 'FAN15G3262' => 'fan', 'FAN19G1352' => 'fan', 'FAN20G2165' => 'fan', 'FAN23G1583' => 'fan', 'FAN24G1530' => 'fan', 'FAN26G3103' => 'fan', 'FAN27G2421' => 'fan', 'FAN28G0859' => 'fan', 'FvH4_1g03630' => 'fve', 'FvH4_2g29540' => 'fve', 'FvH4_6g30320' => 'fve', 'Glyma.02G196600' => 'gma', 'Glyma.04G068400' => 'gma', 'Glyma.05G008600' => 'gma', 'Glyma.05G008700' => 'gma', 'Glyma.06G069900' => 'gma', 'Glyma.06G216600' => 'gma', 'Glyma.07G032300' => 'gma', 'Glyma.08G210200' => 'gma', 'Glyma.17G116800' => 'gma', 'Glyma.17G116900' => 'gma', 'Gohir.A05G009300' => 'ghi', 'Gohir.A05G018000' => 'ghi', 'Gohir.A05G125100' => 'ghi', 'Gohir.A06G057400' => 'ghi', 'Gohir.A06G186900' => 'ghi', 'Gohir.A13G199000' => 'ghi', 'Gohir.D05G010000' => 'ghi', 'Gohir.D05G018900' => 'ghi', 'Gohir.D05G126100' => 'ghi', 'Gohir.D06G055700' => 'ghi', 'Gohir.D06G193100' => 'ghi', 'Gohir.D13G204400' => 'ghi', 'Gorai.009G010300' => 'gra', 'Gorai.009G019300' => 'gra', 'Gorai.009G130100' => 'gra', 'Gorai.010G065000' => 'gra', 'Gorai.010G227000' => 'gra', 'Gorai.013G233200' => 'gra', 'GSVIVG01015499001' => 'vvi', 'GSVIVG01017252001' => 'vvi', 'GSVIVG01035819001' => 'vvi', 'HanXRQChr01g0031111' => 'han', 'HanXRQChr02g0050811' => 'han', 'HanXRQChr10g0316651' => 'han', 'HanXRQChr10g0316661' => 'han', 'HanXRQChr12g0356401' => 'han', 'HanXRQChr12g0356421' => 'han', 'HanXRQChr12g0356431' => 'han', 'HanXRQChr13g0402691' => 'han', 'Haze_16514' => 'cav', 'Haze_21557' => 'cav', 'Hma1.2p1_0665F.1_g199180' => 'hma', 'HPP92_008654' => 'vpl', 'HPP92_023168' => 'vpl', 'HPP92_024604' => 'vpl', 'Hund03022' => 'sun', 'Hund09145' => 'sun', 'Hund09146' => 'sun', 'Hund26485' => 'sun', 'Hund26490' => 'sun', 'Lalb_Chr04g0262471' => 'lal', 'Lalb_Chr07g0178781' => 'lal', 'Lalb_Chr08g0243981' => 'lal', 'Lalb_Chr11g0063821' => 'lal', 'Lalb_Chr13g0301981' => 'lal', 'Lalb_Chr14g0373691' => 'lal', 'Lalb_Chr19g0135021' => 'lal', 'Lj1g0016866' => 'lja', 'Lj3g0007786' => 'lja', 'Lj4C463T2' => 'lonja', 'Lj4g0004155' => 'lja', 'Lj6g0008040' => 'lja', 'Lj7A719T41' => 'lonja', 'Lj8C624T10' => 'lonja', 'Lsat_1_v5_gn_5_31741' => 'lsa', 'Lsat_1_v5_gn_5_98101' => 'lsa', 'Lsat_1_v5_gn_5_98121' => 'lsa', 'Lsat_1_v5_gn_6_22340' => 'lsa', 'Lsat_1_v5_gn_8_57381' => 'lsa', 'Manes.03G017100' => 'mes', 'Manes.04G116400' => 'mes', 'Manes.06G050100' => 'mes', 'Manes.11G052700' => 'mes', 'Manes.14G130000' => 'mes', 'Manes.14G130300' => 'mes', 'Manes.16G120000' => 'mes', 'Mapoly0019s0131' => 'mpo', 'MBI04_g19548_MAGBIO' => 'mbi', 'MBI04_g30115_MAGBIO' => 'mbi', 'MCO05G332' => 'mco', 'MCO13G454' => 'mco', 'MCO14G117' => 'mco', 'MCO15G280' => 'mco', 'MCO16G458' => 'mco', 'MD02G1035800' => 'mdo', 'MD08G1146100' => 'mdo', 'MD09G1220800' => 'mdo', 'MD15G1121500' => 'mdo', 'MD15G1176000' => 'mdo', 'MD17G1204500' => 'mdo', 'Medtr2g054750' => 'mtr', 'Medtr3g107610' => 'mtr', 'Medtr4g011190' => 'mtr', 'Medtr4g113840' => 'mtr', 'MELO3C004523.2' => 'cme', 'MELO3C011238.2' => 'cme', 'MELO3C017900.2' => 'cme', 'MELO3C023401.2' => 'cme', 'MELO3C026642.2' => 'cme', 'Migut.J01181' => 'egut', 'Migut.K00463' => 'egut', 'Migut.K00472' => 'egut', 'MSTRG.11772' => 'ama', 'MSTRG.19608' => 'ama', 'MSTRG.25849' => 'ama', 'MSTRG.6066' => 'ama', 'Nitab4.5_0000151g0010' => 'nta', 'Nitab4.5_0003558g0030' => 'nta', 'Nitab4.5_0003558g0070' => 'nta', 'Nitab4.5_0003558g0080' => 'nta', 'Nitab4.5_0003558g0090' => 'nta', 'Nitab4.5_0004501g0010' => 'nta', 'Nitab4.5_0005563g0020' => 'nta', 'Nitab4.5_0005563g0030' => 'nta', 'Nitab4.5_0005563g0040' => 'nta', 'Nn8g39385' => 'nnu', 'Oeu020100.1' => 'oeu', 'Oeu022127.1' => 'oeu', 'Oeu030208.1' => 'oeu', 'Oeu034107.1' => 'oeu', 'Oeu045333.1' => 'oeu', 'Oeu058055.1' => 'oeu', 'Os01g0555100' => 'osa', 'Os02g0203700' => 'osa', 'Os06g0141200' => 'osa', 'Peaxi162Scf00341g00012' => 'pax', 'Peaxi162Scf00641g00018' => 'pax', 'Peaxi162Scf00984g00119' => 'pax', 'Peaxi162Scf00984g10021' => 'pax', 'PGR031G0194' => 'pgr', 'PGR031G3637' => 'pgr', 'PGR142G1478' => 'pgr', 'PGSC0003DMG400007381' => 'stu', 'PGSC0003DMG400007852' => 'stu', 'PGSC0003DMG401020664' => 'stu', 'PGSC0003DMG402020664' => 'stu', 'Phvul.003G162400' => 'pvu', 'Phvul.003G162500' => 'pvu', 'Phvul.005G175000' => 'pvu', 'Phvul.009G094900' => 'pvu', 'Phvul.009G198300' => 'pvu', 'Phvul.010G153700' => 'pvu', 'Potri.001G172700' => 'ptr', 'Potri.003G061300' => 'ptr', 'Potri.006G149900' => 'ptr', 'Potri.006G251300' => 'ptr', 'Potri.018G029900' => 'ptr', 'Potri.018G066900' => 'ptr', 'PRCOL_00004617' => 'pco', 'Prupe.1G474600' => 'ppe', 'Prupe.3G080000' => 'ppe', 'Prupe.7G239400' => 'ppe', 'Psat0s3001g0040' => 'psa', 'Psat1g026920' => 'psa', 'Psat4g041680' => 'psa', 'Psat7g255600' => 'psa', 'PSO170G3356' => 'pso', 'PSO210G2060' => 'pso', 'PSO210G5966' => 'pso', 'PSO455G0132' => 'pso', 'QL02p022388' => 'qlo', 'QL02p087744' => 'qlo', 'QL05p027843' => 'qlo', 'RcHm_v2.0_Chr2g0136561' => 'rch', 'RcHm_v2.0_Chr6g0298401' => 'rch', 'Rhsim01G0007400' => 'rsi', 'Rhsim01G0007600' => 'rsi', 'Rhsim01G0076900' => 'rsi', 'Rhsim02G0195300' => 'rsi', 'Rhsim02G0196500' => 'rsi', 'Rhsim11G0119300' => 'rsi', 'Sabra03G0035600' => 'sbr', 'Sabra06G0118600' => 'sbr', 'Sabra06G0196400' => 'sbr', 'Sabra18G0031700' => 'sbr', 'Sabra18G0060000' => 'sbr', 'Sc18g0000730' => 'sci', 'Sed0001195' => 'sed', 'Sed0001713' => 'sed', 'Sed0004083' => 'sed', 'Sed0010705' => 'sed', 'Sed0021606' => 'sed', 'Sed0024738' => 'sed', 'Sed0025918' => 'sed', 'SGA_v2.0_scaffold1093G53838' => 'sas', 'SGA_v2.0_scaffold45G17067' => 'sas', 'SHI18574' => 'shi', 'SMO164G0137' => 'smo', 'SMO329G0042' => 'smo', 'Solyc08g067180.4' => 'sly', 'Solyc12g006590.3' => 'sly', 'Solyc12g006600.3' => 'sly', 'Solyc12g011060.3' => 'sly', 'Sopen08g021120' => 'spe', 'Sopen12g002540' => 'spe', 'Sopen12g002550' => 'spe', 'Sopen12g006430' => 'spe', 'Sp2g22040' => 'spa', 'Sp3g13980' => 'spa', 'Sp4g08900' => 'spa', 'TAR383G0790' => 'tar', 'TAR625G0543' => 'tar', 'TAR636G1357' => 'tar', 'TAR636G1593' => 'tar', 'TAR636G2046' => 'tar', 'THA.LOC104799705' => 'tha', 'THA.LOC104809001' => 'tha', 'THA.LOC104810500' => 'tha', 'THA.LOC104818036' => 'tha', 'THA.LOC104826539' => 'tha', 'Thecc.06G072500' => 'tca', 'Thecc.09G122800' => 'tca', 'Thecc.09G149700' => 'tca', 'Thhalv10005026m.g' => 'esa', 'Thhalv10017402m.g' => 'esa', 'Thhalv10021670m.g' => 'esa', 'TPR.G10349' => 'tpr', 'TPR.G10709' => 'tpr', 'TPR.G31764' => 'tpr', 'TPR.G38630' => 'tpr', 'TWI12G0810' => 'twi', 'TWI34G0224' => 'twi', 'TWI34G1607' => 'twi', 'TWI63G0584' => 'twi', 'TWI63G1484' => 'twi', 'TWI75G1763' => 'twi', 'unitig_32.g11666' => 'ugi', 'unitig_748.g7149' => 'ugi', 'unitig_748.g7371' => 'ugi', 'vmacro05191' => 'vma', 'vmacro06176' => 'vma', 'vmacro11151' => 'vma', 'vmacro13104' => 'vma', 'vmacro23135' => 'vma', 'VMungo0331G1537' => 'vmu', 'VMungo1215G0495' => 'vmu', 'VMungo1215G2977' => 'vmu', 'VMungo1309G0321' => 'vmu', 'VMungo1309G1359' => 'vmu', 'Zm00001eb205550' => 'zma', 'Zm00001eb235450' => 'zma', 'Zm00001eb356350' => 'zma', 'Zm00001eb377420' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001564', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001564' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001564', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '408', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001564' ) ), 'genes' => array( 'A01p38410' => 'bna', 'A02p39710' => 'bna', 'A03p39440' => 'bna', 'A06p36200' => 'bna', 'A07p17810' => 'bna', 'Aa31LG11G4840' => 'aar', 'Aa31LG5G9070' => 'aar', 'Aa31LG8G2880' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.205' => 'aag', 'Actinidia07435' => 'ach', 'Actinidia22005' => 'ach', 'Actinidia26404' => 'ach', 'Actinidia40452' => 'ach', 'Ah.09g225790' => 'amhyb', 'Ah.09g225800' => 'amhyb', 'Ah.10g026320' => 'amhyb', 'Ah.12g064030' => 'amhyb', 'Ah.14g080630' => 'amhyb', 'AL3G28340' => 'aly', 'AL4G19730' => 'aly', 'AL6G37290' => 'aly', 'Aqoxy7G02086' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2YFD5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81V95F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CN67L5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2CVAQ' => 'arhy', 'AT2G26695' => 'ath', 'AT3G15680' => 'ath', 'AT5G25490' => 'ath', 'Atru.chr1.3091' => 'acertr', 'Atru.chr7.1191' => 'acertr', 'Atru.chr7.1193' => 'acertr', 'Atru.chr7.2384' => 'acertr', 'AUR62011084' => 'cqu', 'AUR62011085' => 'cqu', 'AUR62024886' => 'cqu', 'AUR62030661' => 'cqu', 'AUR62033466' => 'cqu', 'AUR62033467' => 'cqu', 'BcaB04g20907' => 'bca', 'BcaB07g29995' => 'bca', 'BcaC01g03860' => 'bca', 'BcaC01g03861' => 'bca', 'BcaC01g03862' => 'bca', 'BcaC02g10834' => 'bca', 'BcaC09g48549' => 'bca', 'BcaNung07111' => 'bca', 'BolC1t04827H' => 'bol', 'BolC2t12012H' => 'bol', 'BolC3t17061H' => 'bol', 'BolC4t23970H' => 'bol', 'BolC7t44762H' => 'bol', 'BraA01t03891Z' => 'bra', 'BraA02t08936Z' => 'bra', 'BraA03t13094Z' => 'bra', 'BraA06t26541Z' => 'bra', 'BraA07t29501Z' => 'bra', 'C01p48720' => 'bna', 'C02p59490' => 'bna', 'C03p47830' => 'bna', 'C04p24640' => 'bna', 'C07p42330' => 'bna', 'CAN.G348.2' => 'can', 'CAN.G377.4' => 'can', 'CAN.G377.5' => 'can', 'CANSAT11G0701' => 'cansat', 'CANSAT56G0615' => 'cansat', 'CARHR090770' => 'chi', 'CARHR118750' => 'chi', 'CARHR187900' => 'chi', 'Carub.0003s1543' => 'cru', 'Carub.0004s0700' => 'cru', 'Carub.0006s2335' => 'cru', 'Ca_02445_v3' => 'car', 'Ca_15722_v3' => 'car', 'Ca_20426_v3' => 'car', 'Ca_21698_v3' => 'car', 'CBR_g38837' => 'cbr', 'Cc06_g08810' => 'ccan', 'Cc11_g01930' => 'ccan', 'CDE04G2147' => 'cde', 'Cfa002010' => 'cfa', 'Cfa003344' => 'cfa', 'Cfa023651' => 'cfa', 'Ciclev10009760m.g' => 'ccl', 'Ciclev10009893m.g' => 'ccl', 'Ciclev10026703m.g' => 'ccl', 'CiPaw.01G244500' => 'cil', 'CiPaw.02G154900' => 'cil', 'CiPaw.03G241500' => 'cil', 'CiPaw.04G170100' => 'cil', 'CiPaw.07G221200' => 'cil', 'CiPaw.08G012900' => 'cil', 'ClCG06G010900' => 'cla', 'ClCG07G012800' => 'cla', 'ClCG08G013170' => 'cla', 'ClCG11G002870' => 'cla', 'COL.COLO4_05759' => 'col', 'COL.COLO4_12897' => 'col', 'COL.COLO4_23975' => 'col', 'COL.COLO4_25495' => 'col', 'Cpa.g.sc115.12' => 'cpa', 'Cpa.g.sc336.9' => 'cpa', 'Cpa.g.sc75.58' => 'cpa', 'CsaV3_1G029820' => 'csa', 'CsaV3_2G002710' => 'csa', 'CsaV3_2G031890' => 'csa', 'CsaV3_4G001400' => 'csa', 'CSS0003314' => 'camsi', 'CSS0017404' => 'camsi', 'CSS0026256' => 'camsi', 'CSS0030088' => 'camsi', 'CSS0030555' => 'camsi', 'CSS0036181' => 'camsi', 'CSS0037183' => 'camsi', 'CSS0039712' => 'camsi', 'CSS0040547' => 'camsi', 'CSS0040777' => 'camsi', 'CSS0049275' => 'camsi', 'DCAR_003041' => 'dca', 'DCAR_009202' => 'dca', 'DCAR_009203' => 'dca', 'DCAR_014864' => 'dca', 'DCAR_017833' => 'dca', 'Dinv11624' => 'din', 'Dinv36550' => 'din', 'Dinv36551' => 'din', 'Dinv41533' => 'din', 'Duzib150G1447' => 'dzi', 'Duzib160G0303' => 'dzi', 'Duzib168G1240' => 'dzi', 'Duzib168G1983' => 'dzi', 'Duzib187G0397' => 'dzi', 'Duzib187G0642' => 'dzi', 'Duzib192G0024' => 'dzi', 'Duzib192G0968' => 'dzi', 'Duzib235G0157' => 'dzi', 'ECA233G4471' => 'eca', 'ECA234G0565' => 'eca', 'ECA234G0849' => 'eca', 'EL10Ac2g02598' => 'bvu', 'EL10Ac8g18609' => 'bvu', 'EL10Ac8g18610' => 'bvu', 'Eucgr.C01126' => 'egr', 'Eucgr.C01132' => 'egr', 'Eucgr.C01779' => 'egr', 'Eucgr.C02807' => 'egr', 'Eucgr.F02548' => 'egr', 'Eucgr.L00288' => 'egr', 'Eucgr.L00295' => 'egr', 'FAN02G4335' => 'fan', 'FAN05G3054' => 'fan', 'FAN09G2896' => 'fan', 'FAN14G1205' => 'fan', 'FAN15G3262' => 'fan', 'FAN19G1352' => 'fan', 'FAN20G2165' => 'fan', 'FAN23G1583' => 'fan', 'FAN24G1530' => 'fan', 'FAN26G3103' => 'fan', 'FAN27G2421' => 'fan', 'FAN28G0859' => 'fan', 'FvH4_1g03630' => 'fve', 'FvH4_2g29540' => 'fve', 'FvH4_6g30320' => 'fve', 'Glyma.02G196600' => 'gma', 'Glyma.04G068400' => 'gma', 'Glyma.05G008600' => 'gma', 'Glyma.05G008700' => 'gma', 'Glyma.06G069900' => 'gma', 'Glyma.06G216600' => 'gma', 'Glyma.07G032300' => 'gma', 'Glyma.08G210200' => 'gma', 'Glyma.17G116800' => 'gma', 'Glyma.17G116900' => 'gma', 'Gohir.A05G009300' => 'ghi', 'Gohir.A05G018000' => 'ghi', 'Gohir.A05G125100' => 'ghi', 'Gohir.A06G057400' => 'ghi', 'Gohir.A06G186900' => 'ghi', 'Gohir.A13G199000' => 'ghi', 'Gohir.D05G010000' => 'ghi', 'Gohir.D05G018900' => 'ghi', 'Gohir.D05G126100' => 'ghi', 'Gohir.D06G055700' => 'ghi', 'Gohir.D06G193100' => 'ghi', 'Gohir.D13G204400' => 'ghi', 'Gorai.009G010300' => 'gra', 'Gorai.009G019300' => 'gra', 'Gorai.009G130100' => 'gra', 'Gorai.010G065000' => 'gra', 'Gorai.010G227000' => 'gra', 'Gorai.013G233200' => 'gra', 'GSVIVG01015499001' => 'vvi', 'GSVIVG01017252001' => 'vvi', 'GSVIVG01035819001' => 'vvi', 'HanXRQChr01g0031111' => 'han', 'HanXRQChr02g0050811' => 'han', 'HanXRQChr10g0316651' => 'han', 'HanXRQChr10g0316661' => 'han', 'HanXRQChr12g0356401' => 'han', 'HanXRQChr12g0356421' => 'han', 'HanXRQChr12g0356431' => 'han', 'HanXRQChr13g0402691' => 'han', 'Haze_16514' => 'cav', 'Haze_21557' => 'cav', 'Hma1.2p1_0665F.1_g199180' => 'hma', 'HPP92_008654' => 'vpl', 'HPP92_023168' => 'vpl', 'HPP92_024604' => 'vpl', 'Hund03022' => 'sun', 'Hund09145' => 'sun', 'Hund09146' => 'sun', 'Hund26485' => 'sun', 'Hund26490' => 'sun', 'Lalb_Chr04g0262471' => 'lal', 'Lalb_Chr07g0178781' => 'lal', 'Lalb_Chr08g0243981' => 'lal', 'Lalb_Chr11g0063821' => 'lal', 'Lalb_Chr13g0301981' => 'lal', 'Lalb_Chr14g0373691' => 'lal', 'Lalb_Chr19g0135021' => 'lal', 'Lj1g0016866' => 'lja', 'Lj3g0007786' => 'lja', 'Lj4C463T2' => 'lonja', 'Lj4g0004155' => 'lja', 'Lj6g0008040' => 'lja', 'Lj7A719T41' => 'lonja', 'Lj8C624T10' => 'lonja', 'Lsat_1_v5_gn_5_31741' => 'lsa', 'Lsat_1_v5_gn_5_98101' => 'lsa', 'Lsat_1_v5_gn_5_98121' => 'lsa', 'Lsat_1_v5_gn_6_22340' => 'lsa', 'Lsat_1_v5_gn_8_57381' => 'lsa', 'Manes.03G017100' => 'mes', 'Manes.04G116400' => 'mes', 'Manes.06G050100' => 'mes', 'Manes.11G052700' => 'mes', 'Manes.14G130000' => 'mes', 'Manes.14G130300' => 'mes', 'Manes.16G120000' => 'mes', 'Mapoly0019s0131' => 'mpo', 'MBI04_g19548_MAGBIO' => 'mbi', 'MBI04_g30115_MAGBIO' => 'mbi', 'MCO05G332' => 'mco', 'MCO13G454' => 'mco', 'MCO14G117' => 'mco', 'MCO15G280' => 'mco', 'MCO16G458' => 'mco', 'MD02G1035800' => 'mdo', 'MD08G1146100' => 'mdo', 'MD09G1220800' => 'mdo', 'MD15G1121500' => 'mdo', 'MD15G1176000' => 'mdo', 'MD17G1204500' => 'mdo', 'Medtr2g054750' => 'mtr', 'Medtr3g107610' => 'mtr', 'Medtr4g011190' => 'mtr', 'Medtr4g113840' => 'mtr', 'MELO3C004523.2' => 'cme', 'MELO3C011238.2' => 'cme', 'MELO3C017900.2' => 'cme', 'MELO3C023401.2' => 'cme', 'MELO3C026642.2' => 'cme', 'Migut.J01181' => 'egut', 'Migut.K00463' => 'egut', 'Migut.K00472' => 'egut', 'MSTRG.11772' => 'ama', 'MSTRG.19608' => 'ama', 'MSTRG.25849' => 'ama', 'MSTRG.6066' => 'ama', 'Nitab4.5_0000151g0010' => 'nta', 'Nitab4.5_0003558g0030' => 'nta', 'Nitab4.5_0003558g0070' => 'nta', 'Nitab4.5_0003558g0080' => 'nta', 'Nitab4.5_0003558g0090' => 'nta', 'Nitab4.5_0004501g0010' => 'nta', 'Nitab4.5_0005563g0020' => 'nta', 'Nitab4.5_0005563g0030' => 'nta', 'Nitab4.5_0005563g0040' => 'nta', 'Nn8g39385' => 'nnu', 'Oeu020100.1' => 'oeu', 'Oeu022127.1' => 'oeu', 'Oeu030208.1' => 'oeu', 'Oeu034107.1' => 'oeu', 'Oeu045333.1' => 'oeu', 'Oeu058055.1' => 'oeu', 'Os01g0555100' => 'osa', 'Os02g0203700' => 'osa', 'Os06g0141200' => 'osa', 'Peaxi162Scf00341g00012' => 'pax', 'Peaxi162Scf00641g00018' => 'pax', 'Peaxi162Scf00984g00119' => 'pax', 'Peaxi162Scf00984g10021' => 'pax', 'PGR031G0194' => 'pgr', 'PGR031G3637' => 'pgr', 'PGR142G1478' => 'pgr', 'PGSC0003DMG400007381' => 'stu', 'PGSC0003DMG400007852' => 'stu', 'PGSC0003DMG401020664' => 'stu', 'PGSC0003DMG402020664' => 'stu', 'Phvul.003G162400' => 'pvu', 'Phvul.003G162500' => 'pvu', 'Phvul.005G175000' => 'pvu', 'Phvul.009G094900' => 'pvu', 'Phvul.009G198300' => 'pvu', 'Phvul.010G153700' => 'pvu', 'Potri.001G172700' => 'ptr', 'Potri.003G061300' => 'ptr', 'Potri.006G149900' => 'ptr', 'Potri.006G251300' => 'ptr', 'Potri.018G029900' => 'ptr', 'Potri.018G066900' => 'ptr', 'PRCOL_00004617' => 'pco', 'Prupe.1G474600' => 'ppe', 'Prupe.3G080000' => 'ppe', 'Prupe.7G239400' => 'ppe', 'Psat0s3001g0040' => 'psa', 'Psat1g026920' => 'psa', 'Psat4g041680' => 'psa', 'Psat7g255600' => 'psa', 'PSO170G3356' => 'pso', 'PSO210G2060' => 'pso', 'PSO210G5966' => 'pso', 'PSO455G0132' => 'pso', 'QL02p022388' => 'qlo', 'QL02p087744' => 'qlo', 'QL05p027843' => 'qlo', 'RcHm_v2.0_Chr2g0136561' => 'rch', 'RcHm_v2.0_Chr6g0298401' => 'rch', 'Rhsim01G0007400' => 'rsi', 'Rhsim01G0007600' => 'rsi', 'Rhsim01G0076900' => 'rsi', 'Rhsim02G0195300' => 'rsi', 'Rhsim02G0196500' => 'rsi', 'Rhsim11G0119300' => 'rsi', 'Sabra03G0035600' => 'sbr', 'Sabra06G0118600' => 'sbr', 'Sabra06G0196400' => 'sbr', 'Sabra18G0031700' => 'sbr', 'Sabra18G0060000' => 'sbr', 'Sc18g0000730' => 'sci', 'Sed0001195' => 'sed', 'Sed0001713' => 'sed', 'Sed0004083' => 'sed', 'Sed0010705' => 'sed', 'Sed0021606' => 'sed', 'Sed0024738' => 'sed', 'Sed0025918' => 'sed', 'SGA_v2.0_scaffold1093G53838' => 'sas', 'SGA_v2.0_scaffold45G17067' => 'sas', 'SHI18574' => 'shi', 'SMO164G0137' => 'smo', 'SMO329G0042' => 'smo', 'Solyc08g067180.4' => 'sly', 'Solyc12g006590.3' => 'sly', 'Solyc12g006600.3' => 'sly', 'Solyc12g011060.3' => 'sly', 'Sopen08g021120' => 'spe', 'Sopen12g002540' => 'spe', 'Sopen12g002550' => 'spe', 'Sopen12g006430' => 'spe', 'Sp2g22040' => 'spa', 'Sp3g13980' => 'spa', 'Sp4g08900' => 'spa', 'TAR383G0790' => 'tar', 'TAR625G0543' => 'tar', 'TAR636G1357' => 'tar', 'TAR636G1593' => 'tar', 'TAR636G2046' => 'tar', 'THA.LOC104799705' => 'tha', 'THA.LOC104809001' => 'tha', 'THA.LOC104810500' => 'tha', 'THA.LOC104818036' => 'tha', 'THA.LOC104826539' => 'tha', 'Thecc.06G072500' => 'tca', 'Thecc.09G122800' => 'tca', 'Thecc.09G149700' => 'tca', 'Thhalv10005026m.g' => 'esa', 'Thhalv10017402m.g' => 'esa', 'Thhalv10021670m.g' => 'esa', 'TPR.G10349' => 'tpr', 'TPR.G10709' => 'tpr', 'TPR.G31764' => 'tpr', 'TPR.G38630' => 'tpr', 'TWI12G0810' => 'twi', 'TWI34G0224' => 'twi', 'TWI34G1607' => 'twi', 'TWI63G0584' => 'twi', 'TWI63G1484' => 'twi', 'TWI75G1763' => 'twi', 'unitig_32.g11666' => 'ugi', 'unitig_748.g7149' => 'ugi', 'unitig_748.g7371' => 'ugi', 'vmacro05191' => 'vma', 'vmacro06176' => 'vma', 'vmacro11151' => 'vma', 'vmacro13104' => 'vma', 'vmacro23135' => 'vma', 'VMungo0331G1537' => 'vmu', 'VMungo1215G0495' => 'vmu', 'VMungo1215G2977' => 'vmu', 'VMungo1309G0321' => 'vmu', 'VMungo1309G1359' => 'vmu', 'Zm00001eb205550' => 'zma', 'Zm00001eb235450' => 'zma', 'Zm00001eb356350' => 'zma', 'Zm00001eb377420' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001564' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001564' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001564' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001564' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001564', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '408', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p38410' => 'bna', 'A02p39710' => 'bna', 'A03p39440' => 'bna', 'A06p36200' => 'bna', 'A07p17810' => 'bna', 'Aa31LG11G4840' => 'aar', 'Aa31LG5G9070' => 'aar', 'Aa31LG8G2880' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.205' => 'aag', 'Actinidia07435' => 'ach', 'Actinidia22005' => 'ach', 'Actinidia26404' => 'ach', 'Actinidia40452' => 'ach', 'Ah.09g225790' => 'amhyb', 'Ah.09g225800' => 'amhyb', 'Ah.10g026320' => 'amhyb', 'Ah.12g064030' => 'amhyb', 'Ah.14g080630' => 'amhyb', 'AL3G28340' => 'aly', 'AL4G19730' => 'aly', 'AL6G37290' => 'aly', 'Aqoxy7G02086' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2YFD5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81V95F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CN67L5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2CVAQ' => 'arhy', 'AT2G26695' => 'ath', 'AT3G15680' => 'ath', 'AT5G25490' => 'ath', 'Atru.chr1.3091' => 'acertr', 'Atru.chr7.1191' => 'acertr', 'Atru.chr7.1193' => 'acertr', 'Atru.chr7.2384' => 'acertr', 'AUR62011084' => 'cqu', 'AUR62011085' => 'cqu', 'AUR62024886' => 'cqu', 'AUR62030661' => 'cqu', 'AUR62033466' => 'cqu', 'AUR62033467' => 'cqu', 'BcaB04g20907' => 'bca', 'BcaB07g29995' => 'bca', 'BcaC01g03860' => 'bca', 'BcaC01g03861' => 'bca', 'BcaC01g03862' => 'bca', 'BcaC02g10834' => 'bca', 'BcaC09g48549' => 'bca', 'BcaNung07111' => 'bca', 'BolC1t04827H' => 'bol', 'BolC2t12012H' => 'bol', 'BolC3t17061H' => 'bol', 'BolC4t23970H' => 'bol', 'BolC7t44762H' => 'bol', 'BraA01t03891Z' => 'bra', 'BraA02t08936Z' => 'bra', 'BraA03t13094Z' => 'bra', 'BraA06t26541Z' => 'bra', 'BraA07t29501Z' => 'bra', 'C01p48720' => 'bna', 'C02p59490' => 'bna', 'C03p47830' => 'bna', 'C04p24640' => 'bna', 'C07p42330' => 'bna', 'CAN.G348.2' => 'can', 'CAN.G377.4' => 'can', 'CAN.G377.5' => 'can', 'CANSAT11G0701' => 'cansat', 'CANSAT56G0615' => 'cansat', 'CARHR090770' => 'chi', 'CARHR118750' => 'chi', 'CARHR187900' => 'chi', 'Carub.0003s1543' => 'cru', 'Carub.0004s0700' => 'cru', 'Carub.0006s2335' => 'cru', 'Ca_02445_v3' => 'car', 'Ca_15722_v3' => 'car', 'Ca_20426_v3' => 'car', 'Ca_21698_v3' => 'car', 'CBR_g38837' => 'cbr', 'Cc06_g08810' => 'ccan', 'Cc11_g01930' => 'ccan', 'CDE04G2147' => 'cde', 'Cfa002010' => 'cfa', 'Cfa003344' => 'cfa', 'Cfa023651' => 'cfa', 'Ciclev10009760m.g' => 'ccl', 'Ciclev10009893m.g' => 'ccl', 'Ciclev10026703m.g' => 'ccl', 'CiPaw.01G244500' => 'cil', 'CiPaw.02G154900' => 'cil', 'CiPaw.03G241500' => 'cil', 'CiPaw.04G170100' => 'cil', 'CiPaw.07G221200' => 'cil', 'CiPaw.08G012900' => 'cil', 'ClCG06G010900' => 'cla', 'ClCG07G012800' => 'cla', 'ClCG08G013170' => 'cla', 'ClCG11G002870' => 'cla', 'COL.COLO4_05759' => 'col', 'COL.COLO4_12897' => 'col', 'COL.COLO4_23975' => 'col', 'COL.COLO4_25495' => 'col', 'Cpa.g.sc115.12' => 'cpa', 'Cpa.g.sc336.9' => 'cpa', 'Cpa.g.sc75.58' => 'cpa', 'CsaV3_1G029820' => 'csa', 'CsaV3_2G002710' => 'csa', 'CsaV3_2G031890' => 'csa', 'CsaV3_4G001400' => 'csa', 'CSS0003314' => 'camsi', 'CSS0017404' => 'camsi', 'CSS0026256' => 'camsi', 'CSS0030088' => 'camsi', 'CSS0030555' => 'camsi', 'CSS0036181' => 'camsi', 'CSS0037183' => 'camsi', 'CSS0039712' => 'camsi', 'CSS0040547' => 'camsi', 'CSS0040777' => 'camsi', 'CSS0049275' => 'camsi', 'DCAR_003041' => 'dca', 'DCAR_009202' => 'dca', 'DCAR_009203' => 'dca', 'DCAR_014864' => 'dca', 'DCAR_017833' => 'dca', 'Dinv11624' => 'din', 'Dinv36550' => 'din', 'Dinv36551' => 'din', 'Dinv41533' => 'din', 'Duzib150G1447' => 'dzi', 'Duzib160G0303' => 'dzi', 'Duzib168G1240' => 'dzi', 'Duzib168G1983' => 'dzi', 'Duzib187G0397' => 'dzi', 'Duzib187G0642' => 'dzi', 'Duzib192G0024' => 'dzi', 'Duzib192G0968' => 'dzi', 'Duzib235G0157' => 'dzi', 'ECA233G4471' => 'eca', 'ECA234G0565' => 'eca', 'ECA234G0849' => 'eca', 'EL10Ac2g02598' => 'bvu', 'EL10Ac8g18609' => 'bvu', 'EL10Ac8g18610' => 'bvu', 'Eucgr.C01126' => 'egr', 'Eucgr.C01132' => 'egr', 'Eucgr.C01779' => 'egr', 'Eucgr.C02807' => 'egr', 'Eucgr.F02548' => 'egr', 'Eucgr.L00288' => 'egr', 'Eucgr.L00295' => 'egr', 'FAN02G4335' => 'fan', 'FAN05G3054' => 'fan', 'FAN09G2896' => 'fan', 'FAN14G1205' => 'fan', 'FAN15G3262' => 'fan', 'FAN19G1352' => 'fan', 'FAN20G2165' => 'fan', 'FAN23G1583' => 'fan', 'FAN24G1530' => 'fan', 'FAN26G3103' => 'fan', 'FAN27G2421' => 'fan', 'FAN28G0859' => 'fan', 'FvH4_1g03630' => 'fve', 'FvH4_2g29540' => 'fve', 'FvH4_6g30320' => 'fve', 'Glyma.02G196600' => 'gma', 'Glyma.04G068400' => 'gma', 'Glyma.05G008600' => 'gma', 'Glyma.05G008700' => 'gma', 'Glyma.06G069900' => 'gma', 'Glyma.06G216600' => 'gma', 'Glyma.07G032300' => 'gma', 'Glyma.08G210200' => 'gma', 'Glyma.17G116800' => 'gma', 'Glyma.17G116900' => 'gma', 'Gohir.A05G009300' => 'ghi', 'Gohir.A05G018000' => 'ghi', 'Gohir.A05G125100' => 'ghi', 'Gohir.A06G057400' => 'ghi', 'Gohir.A06G186900' => 'ghi', 'Gohir.A13G199000' => 'ghi', 'Gohir.D05G010000' => 'ghi', 'Gohir.D05G018900' => 'ghi', 'Gohir.D05G126100' => 'ghi', 'Gohir.D06G055700' => 'ghi', 'Gohir.D06G193100' => 'ghi', 'Gohir.D13G204400' => 'ghi', 'Gorai.009G010300' => 'gra', 'Gorai.009G019300' => 'gra', 'Gorai.009G130100' => 'gra', 'Gorai.010G065000' => 'gra', 'Gorai.010G227000' => 'gra', 'Gorai.013G233200' => 'gra', 'GSVIVG01015499001' => 'vvi', 'GSVIVG01017252001' => 'vvi', 'GSVIVG01035819001' => 'vvi', 'HanXRQChr01g0031111' => 'han', 'HanXRQChr02g0050811' => 'han', 'HanXRQChr10g0316651' => 'han', 'HanXRQChr10g0316661' => 'han', 'HanXRQChr12g0356401' => 'han', 'HanXRQChr12g0356421' => 'han', 'HanXRQChr12g0356431' => 'han', 'HanXRQChr13g0402691' => 'han', 'Haze_16514' => 'cav', 'Haze_21557' => 'cav', 'Hma1.2p1_0665F.1_g199180' => 'hma', 'HPP92_008654' => 'vpl', 'HPP92_023168' => 'vpl', 'HPP92_024604' => 'vpl', 'Hund03022' => 'sun', 'Hund09145' => 'sun', 'Hund09146' => 'sun', 'Hund26485' => 'sun', 'Hund26490' => 'sun', 'Lalb_Chr04g0262471' => 'lal', 'Lalb_Chr07g0178781' => 'lal', 'Lalb_Chr08g0243981' => 'lal', 'Lalb_Chr11g0063821' => 'lal', 'Lalb_Chr13g0301981' => 'lal', 'Lalb_Chr14g0373691' => 'lal', 'Lalb_Chr19g0135021' => 'lal', 'Lj1g0016866' => 'lja', 'Lj3g0007786' => 'lja', 'Lj4C463T2' => 'lonja', 'Lj4g0004155' => 'lja', 'Lj6g0008040' => 'lja', 'Lj7A719T41' => 'lonja', 'Lj8C624T10' => 'lonja', 'Lsat_1_v5_gn_5_31741' => 'lsa', 'Lsat_1_v5_gn_5_98101' => 'lsa', 'Lsat_1_v5_gn_5_98121' => 'lsa', 'Lsat_1_v5_gn_6_22340' => 'lsa', 'Lsat_1_v5_gn_8_57381' => 'lsa', 'Manes.03G017100' => 'mes', 'Manes.04G116400' => 'mes', 'Manes.06G050100' => 'mes', 'Manes.11G052700' => 'mes', 'Manes.14G130000' => 'mes', 'Manes.14G130300' => 'mes', 'Manes.16G120000' => 'mes', 'Mapoly0019s0131' => 'mpo', 'MBI04_g19548_MAGBIO' => 'mbi', 'MBI04_g30115_MAGBIO' => 'mbi', 'MCO05G332' => 'mco', 'MCO13G454' => 'mco', 'MCO14G117' => 'mco', 'MCO15G280' => 'mco', 'MCO16G458' => 'mco', 'MD02G1035800' => 'mdo', 'MD08G1146100' => 'mdo', 'MD09G1220800' => 'mdo', 'MD15G1121500' => 'mdo', 'MD15G1176000' => 'mdo', 'MD17G1204500' => 'mdo', 'Medtr2g054750' => 'mtr', 'Medtr3g107610' => 'mtr', 'Medtr4g011190' => 'mtr', 'Medtr4g113840' => 'mtr', 'MELO3C004523.2' => 'cme', 'MELO3C011238.2' => 'cme', 'MELO3C017900.2' => 'cme', 'MELO3C023401.2' => 'cme', 'MELO3C026642.2' => 'cme', 'Migut.J01181' => 'egut', 'Migut.K00463' => 'egut', 'Migut.K00472' => 'egut', 'MSTRG.11772' => 'ama', 'MSTRG.19608' => 'ama', 'MSTRG.25849' => 'ama', 'MSTRG.6066' => 'ama', 'Nitab4.5_0000151g0010' => 'nta', 'Nitab4.5_0003558g0030' => 'nta', 'Nitab4.5_0003558g0070' => 'nta', 'Nitab4.5_0003558g0080' => 'nta', 'Nitab4.5_0003558g0090' => 'nta', 'Nitab4.5_0004501g0010' => 'nta', 'Nitab4.5_0005563g0020' => 'nta', 'Nitab4.5_0005563g0030' => 'nta', 'Nitab4.5_0005563g0040' => 'nta', 'Nn8g39385' => 'nnu', 'Oeu020100.1' => 'oeu', 'Oeu022127.1' => 'oeu', 'Oeu030208.1' => 'oeu', 'Oeu034107.1' => 'oeu', 'Oeu045333.1' => 'oeu', 'Oeu058055.1' => 'oeu', 'Os01g0555100' => 'osa', 'Os02g0203700' => 'osa', 'Os06g0141200' => 'osa', 'Peaxi162Scf00341g00012' => 'pax', 'Peaxi162Scf00641g00018' => 'pax', 'Peaxi162Scf00984g00119' => 'pax', 'Peaxi162Scf00984g10021' => 'pax', 'PGR031G0194' => 'pgr', 'PGR031G3637' => 'pgr', 'PGR142G1478' => 'pgr', 'PGSC0003DMG400007381' => 'stu', 'PGSC0003DMG400007852' => 'stu', 'PGSC0003DMG401020664' => 'stu', 'PGSC0003DMG402020664' => 'stu', 'Phvul.003G162400' => 'pvu', 'Phvul.003G162500' => 'pvu', 'Phvul.005G175000' => 'pvu', 'Phvul.009G094900' => 'pvu', 'Phvul.009G198300' => 'pvu', 'Phvul.010G153700' => 'pvu', 'Potri.001G172700' => 'ptr', 'Potri.003G061300' => 'ptr', 'Potri.006G149900' => 'ptr', 'Potri.006G251300' => 'ptr', 'Potri.018G029900' => 'ptr', 'Potri.018G066900' => 'ptr', 'PRCOL_00004617' => 'pco', 'Prupe.1G474600' => 'ppe', 'Prupe.3G080000' => 'ppe', 'Prupe.7G239400' => 'ppe', 'Psat0s3001g0040' => 'psa', 'Psat1g026920' => 'psa', 'Psat4g041680' => 'psa', 'Psat7g255600' => 'psa', 'PSO170G3356' => 'pso', 'PSO210G2060' => 'pso', 'PSO210G5966' => 'pso', 'PSO455G0132' => 'pso', 'QL02p022388' => 'qlo', 'QL02p087744' => 'qlo', 'QL05p027843' => 'qlo', 'RcHm_v2.0_Chr2g0136561' => 'rch', 'RcHm_v2.0_Chr6g0298401' => 'rch', 'Rhsim01G0007400' => 'rsi', 'Rhsim01G0007600' => 'rsi', 'Rhsim01G0076900' => 'rsi', 'Rhsim02G0195300' => 'rsi', 'Rhsim02G0196500' => 'rsi', 'Rhsim11G0119300' => 'rsi', 'Sabra03G0035600' => 'sbr', 'Sabra06G0118600' => 'sbr', 'Sabra06G0196400' => 'sbr', 'Sabra18G0031700' => 'sbr', 'Sabra18G0060000' => 'sbr', 'Sc18g0000730' => 'sci', 'Sed0001195' => 'sed', 'Sed0001713' => 'sed', 'Sed0004083' => 'sed', 'Sed0010705' => 'sed', 'Sed0021606' => 'sed', 'Sed0024738' => 'sed', 'Sed0025918' => 'sed', 'SGA_v2.0_scaffold1093G53838' => 'sas', 'SGA_v2.0_scaffold45G17067' => 'sas', 'SHI18574' => 'shi', 'SMO164G0137' => 'smo', 'SMO329G0042' => 'smo', 'Solyc08g067180.4' => 'sly', 'Solyc12g006590.3' => 'sly', 'Solyc12g006600.3' => 'sly', 'Solyc12g011060.3' => 'sly', 'Sopen08g021120' => 'spe', 'Sopen12g002540' => 'spe', 'Sopen12g002550' => 'spe', 'Sopen12g006430' => 'spe', 'Sp2g22040' => 'spa', 'Sp3g13980' => 'spa', 'Sp4g08900' => 'spa', 'TAR383G0790' => 'tar', 'TAR625G0543' => 'tar', 'TAR636G1357' => 'tar', 'TAR636G1593' => 'tar', 'TAR636G2046' => 'tar', 'THA.LOC104799705' => 'tha', 'THA.LOC104809001' => 'tha', 'THA.LOC104810500' => 'tha', 'THA.LOC104818036' => 'tha', 'THA.LOC104826539' => 'tha', 'Thecc.06G072500' => 'tca', 'Thecc.09G122800' => 'tca', 'Thecc.09G149700' => 'tca', 'Thhalv10005026m.g' => 'esa', 'Thhalv10017402m.g' => 'esa', 'Thhalv10021670m.g' => 'esa', 'TPR.G10349' => 'tpr', 'TPR.G10709' => 'tpr', 'TPR.G31764' => 'tpr', 'TPR.G38630' => 'tpr', 'TWI12G0810' => 'twi', 'TWI34G0224' => 'twi', 'TWI34G1607' => 'twi', 'TWI63G0584' => 'twi', 'TWI63G1484' => 'twi', 'TWI75G1763' => 'twi', 'unitig_32.g11666' => 'ugi', 'unitig_748.g7149' => 'ugi', 'unitig_748.g7371' => 'ugi', 'vmacro05191' => 'vma', 'vmacro06176' => 'vma', 'vmacro11151' => 'vma', 'vmacro13104' => 'vma', 'vmacro23135' => 'vma', 'VMungo0331G1537' => 'vmu', 'VMungo1215G0495' => 'vmu', 'VMungo1215G2977' => 'vmu', 'VMungo1309G0321' => 'vmu', 'VMungo1309G1359' => 'vmu', 'Zm00001eb205550' => 'zma', 'Zm00001eb235450' => 'zma', 'Zm00001eb356350' => 'zma', 'Zm00001eb377420' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001564', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001564' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001564', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '408', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001564' ) ), 'genes' => array( 'A01p38410' => 'bna', 'A02p39710' => 'bna', 'A03p39440' => 'bna', 'A06p36200' => 'bna', 'A07p17810' => 'bna', 'Aa31LG11G4840' => 'aar', 'Aa31LG5G9070' => 'aar', 'Aa31LG8G2880' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.205' => 'aag', 'Actinidia07435' => 'ach', 'Actinidia22005' => 'ach', 'Actinidia26404' => 'ach', 'Actinidia40452' => 'ach', 'Ah.09g225790' => 'amhyb', 'Ah.09g225800' => 'amhyb', 'Ah.10g026320' => 'amhyb', 'Ah.12g064030' => 'amhyb', 'Ah.14g080630' => 'amhyb', 'AL3G28340' => 'aly', 'AL4G19730' => 'aly', 'AL6G37290' => 'aly', 'Aqoxy7G02086' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2YFD5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81V95F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CN67L5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2CVAQ' => 'arhy', 'AT2G26695' => 'ath', 'AT3G15680' => 'ath', 'AT5G25490' => 'ath', 'Atru.chr1.3091' => 'acertr', 'Atru.chr7.1191' => 'acertr', 'Atru.chr7.1193' => 'acertr', 'Atru.chr7.2384' => 'acertr', 'AUR62011084' => 'cqu', 'AUR62011085' => 'cqu', 'AUR62024886' => 'cqu', 'AUR62030661' => 'cqu', 'AUR62033466' => 'cqu', 'AUR62033467' => 'cqu', 'BcaB04g20907' => 'bca', 'BcaB07g29995' => 'bca', 'BcaC01g03860' => 'bca', 'BcaC01g03861' => 'bca', 'BcaC01g03862' => 'bca', 'BcaC02g10834' => 'bca', 'BcaC09g48549' => 'bca', 'BcaNung07111' => 'bca', 'BolC1t04827H' => 'bol', 'BolC2t12012H' => 'bol', 'BolC3t17061H' => 'bol', 'BolC4t23970H' => 'bol', 'BolC7t44762H' => 'bol', 'BraA01t03891Z' => 'bra', 'BraA02t08936Z' => 'bra', 'BraA03t13094Z' => 'bra', 'BraA06t26541Z' => 'bra', 'BraA07t29501Z' => 'bra', 'C01p48720' => 'bna', 'C02p59490' => 'bna', 'C03p47830' => 'bna', 'C04p24640' => 'bna', 'C07p42330' => 'bna', 'CAN.G348.2' => 'can', 'CAN.G377.4' => 'can', 'CAN.G377.5' => 'can', 'CANSAT11G0701' => 'cansat', 'CANSAT56G0615' => 'cansat', 'CARHR090770' => 'chi', 'CARHR118750' => 'chi', 'CARHR187900' => 'chi', 'Carub.0003s1543' => 'cru', 'Carub.0004s0700' => 'cru', 'Carub.0006s2335' => 'cru', 'Ca_02445_v3' => 'car', 'Ca_15722_v3' => 'car', 'Ca_20426_v3' => 'car', 'Ca_21698_v3' => 'car', 'CBR_g38837' => 'cbr', 'Cc06_g08810' => 'ccan', 'Cc11_g01930' => 'ccan', 'CDE04G2147' => 'cde', 'Cfa002010' => 'cfa', 'Cfa003344' => 'cfa', 'Cfa023651' => 'cfa', 'Ciclev10009760m.g' => 'ccl', 'Ciclev10009893m.g' => 'ccl', 'Ciclev10026703m.g' => 'ccl', 'CiPaw.01G244500' => 'cil', 'CiPaw.02G154900' => 'cil', 'CiPaw.03G241500' => 'cil', 'CiPaw.04G170100' => 'cil', 'CiPaw.07G221200' => 'cil', 'CiPaw.08G012900' => 'cil', 'ClCG06G010900' => 'cla', 'ClCG07G012800' => 'cla', 'ClCG08G013170' => 'cla', 'ClCG11G002870' => 'cla', 'COL.COLO4_05759' => 'col', 'COL.COLO4_12897' => 'col', 'COL.COLO4_23975' => 'col', 'COL.COLO4_25495' => 'col', 'Cpa.g.sc115.12' => 'cpa', 'Cpa.g.sc336.9' => 'cpa', 'Cpa.g.sc75.58' => 'cpa', 'CsaV3_1G029820' => 'csa', 'CsaV3_2G002710' => 'csa', 'CsaV3_2G031890' => 'csa', 'CsaV3_4G001400' => 'csa', 'CSS0003314' => 'camsi', 'CSS0017404' => 'camsi', 'CSS0026256' => 'camsi', 'CSS0030088' => 'camsi', 'CSS0030555' => 'camsi', 'CSS0036181' => 'camsi', 'CSS0037183' => 'camsi', 'CSS0039712' => 'camsi', 'CSS0040547' => 'camsi', 'CSS0040777' => 'camsi', 'CSS0049275' => 'camsi', 'DCAR_003041' => 'dca', 'DCAR_009202' => 'dca', 'DCAR_009203' => 'dca', 'DCAR_014864' => 'dca', 'DCAR_017833' => 'dca', 'Dinv11624' => 'din', 'Dinv36550' => 'din', 'Dinv36551' => 'din', 'Dinv41533' => 'din', 'Duzib150G1447' => 'dzi', 'Duzib160G0303' => 'dzi', 'Duzib168G1240' => 'dzi', 'Duzib168G1983' => 'dzi', 'Duzib187G0397' => 'dzi', 'Duzib187G0642' => 'dzi', 'Duzib192G0024' => 'dzi', 'Duzib192G0968' => 'dzi', 'Duzib235G0157' => 'dzi', 'ECA233G4471' => 'eca', 'ECA234G0565' => 'eca', 'ECA234G0849' => 'eca', 'EL10Ac2g02598' => 'bvu', 'EL10Ac8g18609' => 'bvu', 'EL10Ac8g18610' => 'bvu', 'Eucgr.C01126' => 'egr', 'Eucgr.C01132' => 'egr', 'Eucgr.C01779' => 'egr', 'Eucgr.C02807' => 'egr', 'Eucgr.F02548' => 'egr', 'Eucgr.L00288' => 'egr', 'Eucgr.L00295' => 'egr', 'FAN02G4335' => 'fan', 'FAN05G3054' => 'fan', 'FAN09G2896' => 'fan', 'FAN14G1205' => 'fan', 'FAN15G3262' => 'fan', 'FAN19G1352' => 'fan', 'FAN20G2165' => 'fan', 'FAN23G1583' => 'fan', 'FAN24G1530' => 'fan', 'FAN26G3103' => 'fan', 'FAN27G2421' => 'fan', 'FAN28G0859' => 'fan', 'FvH4_1g03630' => 'fve', 'FvH4_2g29540' => 'fve', 'FvH4_6g30320' => 'fve', 'Glyma.02G196600' => 'gma', 'Glyma.04G068400' => 'gma', 'Glyma.05G008600' => 'gma', 'Glyma.05G008700' => 'gma', 'Glyma.06G069900' => 'gma', 'Glyma.06G216600' => 'gma', 'Glyma.07G032300' => 'gma', 'Glyma.08G210200' => 'gma', 'Glyma.17G116800' => 'gma', 'Glyma.17G116900' => 'gma', 'Gohir.A05G009300' => 'ghi', 'Gohir.A05G018000' => 'ghi', 'Gohir.A05G125100' => 'ghi', 'Gohir.A06G057400' => 'ghi', 'Gohir.A06G186900' => 'ghi', 'Gohir.A13G199000' => 'ghi', 'Gohir.D05G010000' => 'ghi', 'Gohir.D05G018900' => 'ghi', 'Gohir.D05G126100' => 'ghi', 'Gohir.D06G055700' => 'ghi', 'Gohir.D06G193100' => 'ghi', 'Gohir.D13G204400' => 'ghi', 'Gorai.009G010300' => 'gra', 'Gorai.009G019300' => 'gra', 'Gorai.009G130100' => 'gra', 'Gorai.010G065000' => 'gra', 'Gorai.010G227000' => 'gra', 'Gorai.013G233200' => 'gra', 'GSVIVG01015499001' => 'vvi', 'GSVIVG01017252001' => 'vvi', 'GSVIVG01035819001' => 'vvi', 'HanXRQChr01g0031111' => 'han', 'HanXRQChr02g0050811' => 'han', 'HanXRQChr10g0316651' => 'han', 'HanXRQChr10g0316661' => 'han', 'HanXRQChr12g0356401' => 'han', 'HanXRQChr12g0356421' => 'han', 'HanXRQChr12g0356431' => 'han', 'HanXRQChr13g0402691' => 'han', 'Haze_16514' => 'cav', 'Haze_21557' => 'cav', 'Hma1.2p1_0665F.1_g199180' => 'hma', 'HPP92_008654' => 'vpl', 'HPP92_023168' => 'vpl', 'HPP92_024604' => 'vpl', 'Hund03022' => 'sun', 'Hund09145' => 'sun', 'Hund09146' => 'sun', 'Hund26485' => 'sun', 'Hund26490' => 'sun', 'Lalb_Chr04g0262471' => 'lal', 'Lalb_Chr07g0178781' => 'lal', 'Lalb_Chr08g0243981' => 'lal', 'Lalb_Chr11g0063821' => 'lal', 'Lalb_Chr13g0301981' => 'lal', 'Lalb_Chr14g0373691' => 'lal', 'Lalb_Chr19g0135021' => 'lal', 'Lj1g0016866' => 'lja', 'Lj3g0007786' => 'lja', 'Lj4C463T2' => 'lonja', 'Lj4g0004155' => 'lja', 'Lj6g0008040' => 'lja', 'Lj7A719T41' => 'lonja', 'Lj8C624T10' => 'lonja', 'Lsat_1_v5_gn_5_31741' => 'lsa', 'Lsat_1_v5_gn_5_98101' => 'lsa', 'Lsat_1_v5_gn_5_98121' => 'lsa', 'Lsat_1_v5_gn_6_22340' => 'lsa', 'Lsat_1_v5_gn_8_57381' => 'lsa', 'Manes.03G017100' => 'mes', 'Manes.04G116400' => 'mes', 'Manes.06G050100' => 'mes', 'Manes.11G052700' => 'mes', 'Manes.14G130000' => 'mes', 'Manes.14G130300' => 'mes', 'Manes.16G120000' => 'mes', 'Mapoly0019s0131' => 'mpo', 'MBI04_g19548_MAGBIO' => 'mbi', 'MBI04_g30115_MAGBIO' => 'mbi', 'MCO05G332' => 'mco', 'MCO13G454' => 'mco', 'MCO14G117' => 'mco', 'MCO15G280' => 'mco', 'MCO16G458' => 'mco', 'MD02G1035800' => 'mdo', 'MD08G1146100' => 'mdo', 'MD09G1220800' => 'mdo', 'MD15G1121500' => 'mdo', 'MD15G1176000' => 'mdo', 'MD17G1204500' => 'mdo', 'Medtr2g054750' => 'mtr', 'Medtr3g107610' => 'mtr', 'Medtr4g011190' => 'mtr', 'Medtr4g113840' => 'mtr', 'MELO3C004523.2' => 'cme', 'MELO3C011238.2' => 'cme', 'MELO3C017900.2' => 'cme', 'MELO3C023401.2' => 'cme', 'MELO3C026642.2' => 'cme', 'Migut.J01181' => 'egut', 'Migut.K00463' => 'egut', 'Migut.K00472' => 'egut', 'MSTRG.11772' => 'ama', 'MSTRG.19608' => 'ama', 'MSTRG.25849' => 'ama', 'MSTRG.6066' => 'ama', 'Nitab4.5_0000151g0010' => 'nta', 'Nitab4.5_0003558g0030' => 'nta', 'Nitab4.5_0003558g0070' => 'nta', 'Nitab4.5_0003558g0080' => 'nta', 'Nitab4.5_0003558g0090' => 'nta', 'Nitab4.5_0004501g0010' => 'nta', 'Nitab4.5_0005563g0020' => 'nta', 'Nitab4.5_0005563g0030' => 'nta', 'Nitab4.5_0005563g0040' => 'nta', 'Nn8g39385' => 'nnu', 'Oeu020100.1' => 'oeu', 'Oeu022127.1' => 'oeu', 'Oeu030208.1' => 'oeu', 'Oeu034107.1' => 'oeu', 'Oeu045333.1' => 'oeu', 'Oeu058055.1' => 'oeu', 'Os01g0555100' => 'osa', 'Os02g0203700' => 'osa', 'Os06g0141200' => 'osa', 'Peaxi162Scf00341g00012' => 'pax', 'Peaxi162Scf00641g00018' => 'pax', 'Peaxi162Scf00984g00119' => 'pax', 'Peaxi162Scf00984g10021' => 'pax', 'PGR031G0194' => 'pgr', 'PGR031G3637' => 'pgr', 'PGR142G1478' => 'pgr', 'PGSC0003DMG400007381' => 'stu', 'PGSC0003DMG400007852' => 'stu', 'PGSC0003DMG401020664' => 'stu', 'PGSC0003DMG402020664' => 'stu', 'Phvul.003G162400' => 'pvu', 'Phvul.003G162500' => 'pvu', 'Phvul.005G175000' => 'pvu', 'Phvul.009G094900' => 'pvu', 'Phvul.009G198300' => 'pvu', 'Phvul.010G153700' => 'pvu', 'Potri.001G172700' => 'ptr', 'Potri.003G061300' => 'ptr', 'Potri.006G149900' => 'ptr', 'Potri.006G251300' => 'ptr', 'Potri.018G029900' => 'ptr', 'Potri.018G066900' => 'ptr', 'PRCOL_00004617' => 'pco', 'Prupe.1G474600' => 'ppe', 'Prupe.3G080000' => 'ppe', 'Prupe.7G239400' => 'ppe', 'Psat0s3001g0040' => 'psa', 'Psat1g026920' => 'psa', 'Psat4g041680' => 'psa', 'Psat7g255600' => 'psa', 'PSO170G3356' => 'pso', 'PSO210G2060' => 'pso', 'PSO210G5966' => 'pso', 'PSO455G0132' => 'pso', 'QL02p022388' => 'qlo', 'QL02p087744' => 'qlo', 'QL05p027843' => 'qlo', 'RcHm_v2.0_Chr2g0136561' => 'rch', 'RcHm_v2.0_Chr6g0298401' => 'rch', 'Rhsim01G0007400' => 'rsi', 'Rhsim01G0007600' => 'rsi', 'Rhsim01G0076900' => 'rsi', 'Rhsim02G0195300' => 'rsi', 'Rhsim02G0196500' => 'rsi', 'Rhsim11G0119300' => 'rsi', 'Sabra03G0035600' => 'sbr', 'Sabra06G0118600' => 'sbr', 'Sabra06G0196400' => 'sbr', 'Sabra18G0031700' => 'sbr', 'Sabra18G0060000' => 'sbr', 'Sc18g0000730' => 'sci', 'Sed0001195' => 'sed', 'Sed0001713' => 'sed', 'Sed0004083' => 'sed', 'Sed0010705' => 'sed', 'Sed0021606' => 'sed', 'Sed0024738' => 'sed', 'Sed0025918' => 'sed', 'SGA_v2.0_scaffold1093G53838' => 'sas', 'SGA_v2.0_scaffold45G17067' => 'sas', 'SHI18574' => 'shi', 'SMO164G0137' => 'smo', 'SMO329G0042' => 'smo', 'Solyc08g067180.4' => 'sly', 'Solyc12g006590.3' => 'sly', 'Solyc12g006600.3' => 'sly', 'Solyc12g011060.3' => 'sly', 'Sopen08g021120' => 'spe', 'Sopen12g002540' => 'spe', 'Sopen12g002550' => 'spe', 'Sopen12g006430' => 'spe', 'Sp2g22040' => 'spa', 'Sp3g13980' => 'spa', 'Sp4g08900' => 'spa', 'TAR383G0790' => 'tar', 'TAR625G0543' => 'tar', 'TAR636G1357' => 'tar', 'TAR636G1593' => 'tar', 'TAR636G2046' => 'tar', 'THA.LOC104799705' => 'tha', 'THA.LOC104809001' => 'tha', 'THA.LOC104810500' => 'tha', 'THA.LOC104818036' => 'tha', 'THA.LOC104826539' => 'tha', 'Thecc.06G072500' => 'tca', 'Thecc.09G122800' => 'tca', 'Thecc.09G149700' => 'tca', 'Thhalv10005026m.g' => 'esa', 'Thhalv10017402m.g' => 'esa', 'Thhalv10021670m.g' => 'esa', 'TPR.G10349' => 'tpr', 'TPR.G10709' => 'tpr', 'TPR.G31764' => 'tpr', 'TPR.G38630' => 'tpr', 'TWI12G0810' => 'twi', 'TWI34G0224' => 'twi', 'TWI34G1607' => 'twi', 'TWI63G0584' => 'twi', 'TWI63G1484' => 'twi', 'TWI75G1763' => 'twi', 'unitig_32.g11666' => 'ugi', 'unitig_748.g7149' => 'ugi', 'unitig_748.g7371' => 'ugi', 'vmacro05191' => 'vma', 'vmacro06176' => 'vma', 'vmacro11151' => 'vma', 'vmacro13104' => 'vma', 'vmacro23135' => 'vma', 'VMungo0331G1537' => 'vmu', 'VMungo1215G0495' => 'vmu', 'VMungo1215G2977' => 'vmu', 'VMungo1309G0321' => 'vmu', 'VMungo1309G1359' => 'vmu', 'Zm00001eb205550' => 'zma', 'Zm00001eb235450' => 'zma', 'Zm00001eb356350' => 'zma', 'Zm00001eb377420' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001564' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001564' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001564' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001564' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151