Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '417', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p26410' => 'bna', 'A05p39180' => 'bna', 'A07p18620' => 'bna', 'Aa31LG5G8060' => 'aar', 'Actinidia03703' => 'ach', 'Ah.14g088460' => 'amhyb', 'AL3G21100' => 'aly', 'AL4G22080' => 'aly', 'Aqoxy1G01162' => 'aox', 'Aqoxy2G01777' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0GB7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQ3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1Y5X8' => 'arhy', 'AT2G28085' => 'ath', 'AT3G09870' => 'ath', 'ATR1136G022' => 'atr', 'Atru.chr3.3549' => 'acertr', 'Atru.chr3.3550' => 'acertr', 'Atru.chr8.1810' => 'acertr', 'Atru.chr8.1811' => 'acertr', 'Atru.chr8.1814' => 'acertr', 'Atru.chr8.1815' => 'acertr', 'Atru.chr8.1816' => 'acertr', 'AUR62012584' => 'cqu', 'AUR62014617' => 'cqu', 'AUR62040347' => 'cqu', 'AUR62042497' => 'cqu', 'BcaB01g03089' => 'bca', 'BcaB02g10136' => 'bca', 'BcaC01g04957' => 'bca', 'BcaC02g10942' => 'bca', 'BcaC05g29498' => 'bca', 'BcaC05g29709' => 'bca', 'BolC3t15514H' => 'bol', 'BolC4t23846H' => 'bol', 'BolC5t34477H' => 'bol', 'BraA03t11856Z' => 'bra', 'BraA05t22707Z' => 'bra', 'BraA07t29575Z' => 'bra', 'C03p31710' => 'bna', 'C04p23440' => 'bna', 'C05p58230' => 'bna', 'CAN.G1169.15' => 'can', 'CAN.G1169.18' => 'can', 'CAN.G1169.20' => 'can', 'CAN.G1169.21' => 'can', 'CAN.G1169.22' => 'can', 'CAN.G1755.6' => 'can', 'CAN.G488.3' => 'can', 'CAN.G488.4' => 'can', 'CAN.G488.5' => 'can', 'CAN.G488.6' => 'can', 'CAN.G546.8' => 'can', 'CAN.G631.64' => 'can', 'CAN.G631.66' => 'can', 'CAN.G631.67' => 'can', 'CAN.G900.35' => 'can', 'CAN.G900.36' => 'can', 'CAN.G900.37' => 'can', 'CANSAT54G2630' => 'cansat', 'CANSAT80G0144' => 'cansat', 'CANSAT80G1990' => 'cansat', 'CARHR084380' => 'chi', 'CARHR120820' => 'chi', 'Carub.0003s0896' => 'cru', 'Carub.0003s0918' => 'cru', 'Carub.0004s0885' => 'cru', 'Ca_01387_v3' => 'car', 'Ca_08859_v3' => 'car', 'Ca_11496_v3' => 'car', 'Cc01_g10550' => 'ccan', 'CDE02G3591' => 'cde', 'CDE02G3783' => 'cde', 'CDE09G0175' => 'cde', 'CDE09G0333' => 'cde', 'Cfa017608' => 'cfa', 'Cfa017609' => 'cfa', 'Cfa017610' => 'cfa', 'Cfa017611' => 'cfa', 'Cfa017613' => 'cfa', 'Ciclev10013118m.g' => 'ccl', 'Ciclev10013167m.g' => 'ccl', 'Ciclev10013305m.g' => 'ccl', 'Ciclev10013517m.g' => 'ccl', 'Ciclev10013732m.g' => 'ccl', 'Ciclev10030059m.g' => 'ccl', 'Ciclev10030078m.g' => 'ccl', 'CiPaw.09G172600' => 'cil', 'CiPaw.13G118700' => 'cil', 'ClCG02G021410' => 'cla', 'ClCG03G002720' => 'cla', 'ClCG04G009290' => 'cla', 'COL.COLO4_26964' => 'col', 'COL.COLO4_26965' => 'col', 'COL.COLO4_26970' => 'col', 'COL.COLO4_26971' => 'col', 'COL.COLO4_34700' => 'col', 'Cpa.g.sc54.76' => 'cpa', 'Cpa.g.sc54.77' => 'cpa', 'Cpa.g.sc54.78' => 'cpa', 'CsaV3_1G013410' => 'csa', 'CsaV3_6G014200' => 'csa', 'CsaV3_6G039880' => 'csa', 'CSS0011505' => 'camsi', 'CSS0032131' => 'camsi', 'CSS0036444' => 'camsi', 'CSS0037855' => 'camsi', 'CSS0042595' => 'camsi', 'CSS0043296' => 'camsi', 'CSS0047069' => 'camsi', 'DCAR_006107' => 'dca', 'DCAR_014994' => 'dca', 'DCAR_020818' => 'dca', 'Dinv34703' => 'din', 'Dinv37315' => 'din', 'Duzib093G1730' => 'dzi', 'Duzib168G1009' => 'dzi', 'Duzib170G1023' => 'dzi', 'ECA233G1003' => 'eca', 'ECA233G1315' => 'eca', 'ECA248G3335' => 'eca', 'EL10Ac7g16626' => 'bvu', 'EL10As6g23706' => 'bvu', 'Eucgr.A01687' => 'egr', 'Eucgr.L01690' => 'egr', 'FAN02G2529' => 'fan', 'FAN05G2097' => 'fan', 'FAN05G3206' => 'fan', 'FAN14G1299' => 'fan', 'FAN14G1618' => 'fan', 'FAN16G0986' => 'fan', 'FAN16G3511' => 'fan', 'FAN21G3490' => 'fan', 'FvH4_3g31150' => 'fve', 'FvH4_6g16370' => 'fve', 'FvH4_6g16380' => 'fve', 'Glyma.03G183000' => 'gma', 'Glyma.03G183100' => 'gma', 'Glyma.03G183200' => 'gma', 'Glyma.10G055600' => 'gma', 'Glyma.10G055800' => 'gma', 'Glyma.10G055900' => 'gma', 'Glyma.10G056000' => 'gma', 'Glyma.10G056200' => 'gma', 'Glyma.10G056300' => 'gma', 'Glyma.10G056400' => 'gma', 'Glyma.10G056500' => 'gma', 'Glyma.10G056600' => 'gma', 'Glyma.11G194800' => 'gma', 'Glyma.12G079300' => 'gma', 'Glyma.12G177400' => 'gma', 'Glyma.13G142700' => 'gma', 'Glyma.13G142800' => 'gma', 'Glyma.13G142900' => 'gma', 'Glyma.13G143000' => 'gma', 'Glyma.13G143100' => 'gma', 'Glyma.13G143200' => 'gma', 'Glyma.13G323300' => 'gma', 'Glyma.19G183700' => 'gma', 'Glyma.19G183800' => 'gma', 'Glyma.19G183900' => 'gma', 'Gohir.A09G146800' => 'ghi', 'Gohir.A09G146900' => 'ghi', 'Gohir.A13G232400' => 'ghi', 'Gohir.D09G142400' => 'ghi', 'Gohir.D09G142420' => 'ghi', 'Gohir.D09G142440' => 'ghi', 'Gohir.D09G142460' => 'ghi', 'Gohir.D09G142480' => 'ghi', 'Gohir.D09G142500' => 'ghi', 'Gohir.D09G142600' => 'ghi', 'Gohir.D13G238000' => 'ghi', 'Gorai.002G162000' => 'gra', 'Gorai.006G163400' => 'gra', 'Gorai.006G163500' => 'gra', 'Gorai.006G163600' => 'gra', 'Gorai.006G163800' => 'gra', 'Gorai.006G163900' => 'gra', 'Gorai.006G164000' => 'gra', 'Gorai.006G164100' => 'gra', 'Gorai.013G268800' => 'gra', 'GSVIVG01031507001' => 'vvi', 'GSVIVG01031508001' => 'vvi', 'HanXRQChr01g0017891' => 'han', 'HanXRQChr01g0017911' => 'han', 'HanXRQChr01g0025331' => 'han', 'HanXRQChr01g0027661' => 'han', 'HanXRQChr08g0215431' => 'han', 'HanXRQChr11g0346191' => 'han', 'HanXRQChr11g0346201' => 'han', 'HanXRQChr11g0350371' => 'han', 'HanXRQChr13g0396601' => 'han', 'Haze_20545' => 'cav', 'Haze_20548' => 'cav', 'Haze_20549' => 'cav', 'Hma1.2p1_0205F.1_g087070' => 'hma', 'Hma1.2p1_0344F.1_g131070' => 'hma', 'Lalb_Chr01g0018711' => 'lal', 'Lalb_Chr20g0112611' => 'lal', 'Lalb_Chr24g0394831' => 'lal', 'Lalb_Chr25g0288991' => 'lal', 'Lj1C207T2' => 'lonja', 'Lj1C207T3' => 'lonja', 'Lj1g0024124' => 'lja', 'Lj3g0008571' => 'lja', 'Lj3g0019702' => 'lja', 'Lsat_1_v5_gn_1_52081' => 'lsa', 'Lsat_1_v5_gn_1_63001' => 'lsa', 'Lsat_1_v5_gn_6_43700' => 'lsa', 'Lsat_1_v5_gn_8_28901' => 'lsa', 'Lsat_1_v5_gn_8_28921' => 'lsa', 'Manes.08G010100' => 'mes', 'Manes.08G010200' => 'mes', 'Manes.08G010202' => 'mes', 'Manes.08G010300' => 'mes', 'Manes.09G066500' => 'mes', 'Manes.11G150600' => 'mes', 'Manes.11G150700' => 'mes', 'MBI18_g04979_MAGBIO' => 'mbi', 'MBI18_g04981_MAGBIO' => 'mbi', 'MBI18_g04982_MAGBIO' => 'mbi', 'MBI18_g10198_MAGBIO' => 'mbi', 'MBI18_g38339_MAGBIO' => 'mbi', 'MD00G1033700' => 'mdo', 'MD04G1093700' => 'mdo', 'MD11G1145300' => 'mdo', 'MD12G1113400' => 'mdo', 'Medtr1g063260' => 'mtr', 'Medtr1g063280' => 'mtr', 'Medtr1g063290' => 'mtr', 'Medtr1g063300' => 'mtr', 'Medtr1g063310' => 'mtr', 'Medtr1g063330' => 'mtr', 'Medtr1g063340' => 'mtr', 'Medtr2g095430' => 'mtr', 'Medtr4g057800' => 'mtr', 'Medtr4g057810' => 'mtr', 'Medtr7g101890' => 'mtr', 'Medtr7g101920' => 'mtr', 'MELO3C004966.2' => 'cme', 'MELO3C024464.2' => 'cme', 'MELO3C026914.2' => 'cme', 'Migut.D02260' => 'egut', 'Migut.J00498' => 'egut', 'Migut.J00657' => 'egut', 'Migut.J00659' => 'egut', 'Migut.J00660' => 'egut', 'Migut.L01699' => 'egut', 'Migut.L01702' => 'egut', 'Migut.N02572' => 'egut', 'Nitab4.5_0000063g0060' => 'nta', 'Nitab4.5_0000063g0070' => 'nta', 'Nitab4.5_0000063g0080' => 'nta', 'Nitab4.5_0000063g0100' => 'nta', 'Nitab4.5_0000106g0420' => 'nta', 'Nitab4.5_0000578g0190' => 'nta', 'Nitab4.5_0000814g0030' => 'nta', 'Nitab4.5_0000814g0060' => 'nta', 'Nitab4.5_0000814g0070' => 'nta', 'Nitab4.5_0002044g0010' => 'nta', 'Nitab4.5_0002186g0060' => 'nta', 'Nitab4.5_0002632g0050' => 'nta', 'Nitab4.5_0010279g0030' => 'nta', 'Nitab4.5_0014813g0010' => 'nta', 'Nn2g11581' => 'nnu', 'Nn2g11584' => 'nnu', 'Nn2g11587' => 'nnu', 'Nn2g11588' => 'nnu', 'Nn2g11589' => 'nnu', 'Nn2g11592' => 'nnu', 'Nn2g11593' => 'nnu', 'Nn2g11594' => 'nnu', 'Nn2g13776' => 'nnu', 'Nn2g13779' => 'nnu', 'Nn2g13781' => 'nnu', 'Nn5g28976' => 'nnu', 'Nn6g35149' => 'nnu', 'Oeu005021.1' => 'oeu', 'Oeu018374.1' => 'oeu', 'Oeu018482.1' => 'oeu', 'Oeu045059.1' => 'oeu', 'Peaxi162Scf00311g00081' => 'pax', 'Peaxi162Scf00311g00092' => 'pax', 'Peaxi162Scf00311g00101' => 'pax', 'Peaxi162Scf00351g00051' => 'pax', 'Peaxi162Scf00701g00012' => 'pax', 'Peaxi162Scf01139g00013' => 'pax', 'Peaxi162Scf01159g00023' => 'pax', 'PGR004G2482' => 'pgr', 'PGR094G0001' => 'pgr', 'PGR094G0003' => 'pgr', 'PGR094G0005' => 'pgr', 'PGR102G0286' => 'pgr', 'PGR102G1100' => 'pgr', 'PGSC0003DMG400003884' => 'stu', 'PGSC0003DMG400003885' => 'stu', 'PGSC0003DMG400007162' => 'stu', 'PGSC0003DMG400008070' => 'stu', 'PGSC0003DMG400010473' => 'stu', 'PGSC0003DMG400028186' => 'stu', 'PGSC0003DMG400028187' => 'stu', 'PGSC0003DMG400028188' => 'stu', 'PGSC0003DMG400028189' => 'stu', 'PGSC0003DMG400028299' => 'stu', 'PGSC0003DMG400046444' => 'stu', 'Phvul.001G178900' => 'pvu', 'Phvul.001G179000' => 'pvu', 'Phvul.005G131801' => 'pvu', 'Phvul.007G219300' => 'pvu', 'Phvul.007G219400' => 'pvu', 'Phvul.007G219500' => 'pvu', 'Phvul.007G219600' => 'pvu', 'Phvul.007G219700' => 'pvu', 'Phvul.011G083900' => 'pvu', 'Potri.006G125100' => 'ptr', 'Potri.010G226400' => 'ptr', 'Potri.016G092400' => 'ptr', 'Prupe.6G108300' => 'ppe', 'Prupe.6G108400' => 'ppe', 'Prupe.6G108500' => 'ppe', 'Prupe.6G232300' => 'ppe', 'Psat0s2933g0120' => 'psa', 'Psat0s3241g0120' => 'psa', 'Psat3g042440' => 'psa', 'Psat6g072880' => 'psa', 'Psat6g074240' => 'psa', 'PSO063G5329' => 'pso', 'PSO339G0220' => 'pso', 'PSO339G1978' => 'pso', 'PSO339G2143' => 'pso', 'PSO339G2379' => 'pso', 'PSO339G3689' => 'pso', 'PSO339G4323' => 'pso', 'PSO407G0342' => 'pso', 'PSO801G0027' => 'pso', 'PSO801G0055' => 'pso', 'PSO801G0121' => 'pso', 'PSO801G0647' => 'pso', 'QL01p015848' => 'qlo', 'QL07p043574' => 'qlo', 'RcHm_v2.0_Chr3g0470221' => 'rch', 'RcHm_v2.0_Chr3g0470231' => 'rch', 'RcHm_v2.0_Chr5g0057771' => 'rch', 'RcHm_v2.0_Chr5g0057781' => 'rch', 'Rhsim01G0212200' => 'rsi', 'Rhsim04G0144300' => 'rsi', 'Sabra06G0098800' => 'sbr', 'Sabra16G0098000' => 'sbr', 'SalBow3G0595' => 'sbo', 'SalBow3G3155' => 'sbo', 'SalBow5G3930' => 'sbo', 'SalBow5G4019' => 'sbo', 'Sc02g0001620' => 'sci', 'Sc02g0001630' => 'sci', 'Sc05g0008420' => 'sci', 'Sed0002400' => 'sed', 'Sed0011485' => 'sed', 'Sed0013058' => 'sed', 'SGA_v2.0_scaffold127G34044' => 'sas', 'SGA_v2.0_scaffold40G15518' => 'sas', 'SGA_v2.0_scaffold75G24846' => 'sas', 'Solyc06g074950.1' => 'sly', 'Solyc09g008170.3' => 'sly', 'Solyc09g008175.1' => 'sly', 'Solyc10g084010.1' => 'sly', 'Solyc10g084020.1' => 'sly', 'Solyc10g150147.1' => 'sly', 'Solyc10g150148.1' => 'sly', 'Solyc11g069093.1' => 'sly', 'Sopen06g031350' => 'spe', 'Sopen09g002970' => 'spe', 'Sopen09g002980' => 'spe', 'Sopen10g033460' => 'spe', 'Sopen10g033480' => 'spe', 'Sopen11g027820' => 'spe', 'Sp3g08210' => 'spa', 'Sp4g10880' => 'spa', 'TAR369G0306' => 'tar', 'TAR623G1087' => 'tar', 'TAR633G0735' => 'tar', 'TAR636G1002' => 'tar', 'THA.LOC104816348' => 'tha', 'THA.LOC104824506' => 'tha', 'THA.LOC104826382' => 'tha', 'THA.LOC104827408' => 'tha', 'Thecc.05G065400' => 'tca', 'Thecc.05G065800' => 'tca', 'Thecc.05G065900' => 'tca', 'Thecc.05G066000' => 'tca', 'Thecc.05G066100' => 'tca', 'Thecc.05G066200' => 'tca', 'Thecc.05G066300' => 'tca', 'Thecc.05G066400' => 'tca', 'Thecc.05G066500' => 'tca', 'Thecc.09G348200' => 'tca', 'Thecc.09G348300' => 'tca', 'Thecc.10G121000' => 'tca', 'Thhalv10017524m.g' => 'esa', 'TPR.G11263' => 'tpr', 'TPR.G11265' => 'tpr', 'TPR.G11278' => 'tpr', 'TPR.G11280' => 'tpr', 'TPR.G11281' => 'tpr', 'TPR.G11527' => 'tpr', 'TPR.G6120' => 'tpr', 'TPR.G9366' => 'tpr', 'TPR.G9368' => 'tpr', 'TWI31G1140' => 'twi', 'TWI53G1569' => 'twi', 'TWI79G1515' => 'twi', 'VMungo0720G1097' => 'vmu', 'VMungo0720G1135' => 'vmu', 'VMungo0720G1189' => 'vmu', 'VMungo1080G0562' => 'vmu', 'VMungo1127G0152' => 'vmu', 'VMungo1383G0801' => 'vmu', 'VMungo1383G3396' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001520', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001520' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '417', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001520' ) ), 'genes' => array( 'A03p26410' => 'bna', 'A05p39180' => 'bna', 'A07p18620' => 'bna', 'Aa31LG5G8060' => 'aar', 'Actinidia03703' => 'ach', 'Ah.14g088460' => 'amhyb', 'AL3G21100' => 'aly', 'AL4G22080' => 'aly', 'Aqoxy1G01162' => 'aox', 'Aqoxy2G01777' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0GB7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQ3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1Y5X8' => 'arhy', 'AT2G28085' => 'ath', 'AT3G09870' => 'ath', 'ATR1136G022' => 'atr', 'Atru.chr3.3549' => 'acertr', 'Atru.chr3.3550' => 'acertr', 'Atru.chr8.1810' => 'acertr', 'Atru.chr8.1811' => 'acertr', 'Atru.chr8.1814' => 'acertr', 'Atru.chr8.1815' => 'acertr', 'Atru.chr8.1816' => 'acertr', 'AUR62012584' => 'cqu', 'AUR62014617' => 'cqu', 'AUR62040347' => 'cqu', 'AUR62042497' => 'cqu', 'BcaB01g03089' => 'bca', 'BcaB02g10136' => 'bca', 'BcaC01g04957' => 'bca', 'BcaC02g10942' => 'bca', 'BcaC05g29498' => 'bca', 'BcaC05g29709' => 'bca', 'BolC3t15514H' => 'bol', 'BolC4t23846H' => 'bol', 'BolC5t34477H' => 'bol', 'BraA03t11856Z' => 'bra', 'BraA05t22707Z' => 'bra', 'BraA07t29575Z' => 'bra', 'C03p31710' => 'bna', 'C04p23440' => 'bna', 'C05p58230' => 'bna', 'CAN.G1169.15' => 'can', 'CAN.G1169.18' => 'can', 'CAN.G1169.20' => 'can', 'CAN.G1169.21' => 'can', 'CAN.G1169.22' => 'can', 'CAN.G1755.6' => 'can', 'CAN.G488.3' => 'can', 'CAN.G488.4' => 'can', 'CAN.G488.5' => 'can', 'CAN.G488.6' => 'can', 'CAN.G546.8' => 'can', 'CAN.G631.64' => 'can', 'CAN.G631.66' => 'can', 'CAN.G631.67' => 'can', 'CAN.G900.35' => 'can', 'CAN.G900.36' => 'can', 'CAN.G900.37' => 'can', 'CANSAT54G2630' => 'cansat', 'CANSAT80G0144' => 'cansat', 'CANSAT80G1990' => 'cansat', 'CARHR084380' => 'chi', 'CARHR120820' => 'chi', 'Carub.0003s0896' => 'cru', 'Carub.0003s0918' => 'cru', 'Carub.0004s0885' => 'cru', 'Ca_01387_v3' => 'car', 'Ca_08859_v3' => 'car', 'Ca_11496_v3' => 'car', 'Cc01_g10550' => 'ccan', 'CDE02G3591' => 'cde', 'CDE02G3783' => 'cde', 'CDE09G0175' => 'cde', 'CDE09G0333' => 'cde', 'Cfa017608' => 'cfa', 'Cfa017609' => 'cfa', 'Cfa017610' => 'cfa', 'Cfa017611' => 'cfa', 'Cfa017613' => 'cfa', 'Ciclev10013118m.g' => 'ccl', 'Ciclev10013167m.g' => 'ccl', 'Ciclev10013305m.g' => 'ccl', 'Ciclev10013517m.g' => 'ccl', 'Ciclev10013732m.g' => 'ccl', 'Ciclev10030059m.g' => 'ccl', 'Ciclev10030078m.g' => 'ccl', 'CiPaw.09G172600' => 'cil', 'CiPaw.13G118700' => 'cil', 'ClCG02G021410' => 'cla', 'ClCG03G002720' => 'cla', 'ClCG04G009290' => 'cla', 'COL.COLO4_26964' => 'col', 'COL.COLO4_26965' => 'col', 'COL.COLO4_26970' => 'col', 'COL.COLO4_26971' => 'col', 'COL.COLO4_34700' => 'col', 'Cpa.g.sc54.76' => 'cpa', 'Cpa.g.sc54.77' => 'cpa', 'Cpa.g.sc54.78' => 'cpa', 'CsaV3_1G013410' => 'csa', 'CsaV3_6G014200' => 'csa', 'CsaV3_6G039880' => 'csa', 'CSS0011505' => 'camsi', 'CSS0032131' => 'camsi', 'CSS0036444' => 'camsi', 'CSS0037855' => 'camsi', 'CSS0042595' => 'camsi', 'CSS0043296' => 'camsi', 'CSS0047069' => 'camsi', 'DCAR_006107' => 'dca', 'DCAR_014994' => 'dca', 'DCAR_020818' => 'dca', 'Dinv34703' => 'din', 'Dinv37315' => 'din', 'Duzib093G1730' => 'dzi', 'Duzib168G1009' => 'dzi', 'Duzib170G1023' => 'dzi', 'ECA233G1003' => 'eca', 'ECA233G1315' => 'eca', 'ECA248G3335' => 'eca', 'EL10Ac7g16626' => 'bvu', 'EL10As6g23706' => 'bvu', 'Eucgr.A01687' => 'egr', 'Eucgr.L01690' => 'egr', 'FAN02G2529' => 'fan', 'FAN05G2097' => 'fan', 'FAN05G3206' => 'fan', 'FAN14G1299' => 'fan', 'FAN14G1618' => 'fan', 'FAN16G0986' => 'fan', 'FAN16G3511' => 'fan', 'FAN21G3490' => 'fan', 'FvH4_3g31150' => 'fve', 'FvH4_6g16370' => 'fve', 'FvH4_6g16380' => 'fve', 'Glyma.03G183000' => 'gma', 'Glyma.03G183100' => 'gma', 'Glyma.03G183200' => 'gma', 'Glyma.10G055600' => 'gma', 'Glyma.10G055800' => 'gma', 'Glyma.10G055900' => 'gma', 'Glyma.10G056000' => 'gma', 'Glyma.10G056200' => 'gma', 'Glyma.10G056300' => 'gma', 'Glyma.10G056400' => 'gma', 'Glyma.10G056500' => 'gma', 'Glyma.10G056600' => 'gma', 'Glyma.11G194800' => 'gma', 'Glyma.12G079300' => 'gma', 'Glyma.12G177400' => 'gma', 'Glyma.13G142700' => 'gma', 'Glyma.13G142800' => 'gma', 'Glyma.13G142900' => 'gma', 'Glyma.13G143000' => 'gma', 'Glyma.13G143100' => 'gma', 'Glyma.13G143200' => 'gma', 'Glyma.13G323300' => 'gma', 'Glyma.19G183700' => 'gma', 'Glyma.19G183800' => 'gma', 'Glyma.19G183900' => 'gma', 'Gohir.A09G146800' => 'ghi', 'Gohir.A09G146900' => 'ghi', 'Gohir.A13G232400' => 'ghi', 'Gohir.D09G142400' => 'ghi', 'Gohir.D09G142420' => 'ghi', 'Gohir.D09G142440' => 'ghi', 'Gohir.D09G142460' => 'ghi', 'Gohir.D09G142480' => 'ghi', 'Gohir.D09G142500' => 'ghi', 'Gohir.D09G142600' => 'ghi', 'Gohir.D13G238000' => 'ghi', 'Gorai.002G162000' => 'gra', 'Gorai.006G163400' => 'gra', 'Gorai.006G163500' => 'gra', 'Gorai.006G163600' => 'gra', 'Gorai.006G163800' => 'gra', 'Gorai.006G163900' => 'gra', 'Gorai.006G164000' => 'gra', 'Gorai.006G164100' => 'gra', 'Gorai.013G268800' => 'gra', 'GSVIVG01031507001' => 'vvi', 'GSVIVG01031508001' => 'vvi', 'HanXRQChr01g0017891' => 'han', 'HanXRQChr01g0017911' => 'han', 'HanXRQChr01g0025331' => 'han', 'HanXRQChr01g0027661' => 'han', 'HanXRQChr08g0215431' => 'han', 'HanXRQChr11g0346191' => 'han', 'HanXRQChr11g0346201' => 'han', 'HanXRQChr11g0350371' => 'han', 'HanXRQChr13g0396601' => 'han', 'Haze_20545' => 'cav', 'Haze_20548' => 'cav', 'Haze_20549' => 'cav', 'Hma1.2p1_0205F.1_g087070' => 'hma', 'Hma1.2p1_0344F.1_g131070' => 'hma', 'Lalb_Chr01g0018711' => 'lal', 'Lalb_Chr20g0112611' => 'lal', 'Lalb_Chr24g0394831' => 'lal', 'Lalb_Chr25g0288991' => 'lal', 'Lj1C207T2' => 'lonja', 'Lj1C207T3' => 'lonja', 'Lj1g0024124' => 'lja', 'Lj3g0008571' => 'lja', 'Lj3g0019702' => 'lja', 'Lsat_1_v5_gn_1_52081' => 'lsa', 'Lsat_1_v5_gn_1_63001' => 'lsa', 'Lsat_1_v5_gn_6_43700' => 'lsa', 'Lsat_1_v5_gn_8_28901' => 'lsa', 'Lsat_1_v5_gn_8_28921' => 'lsa', 'Manes.08G010100' => 'mes', 'Manes.08G010200' => 'mes', 'Manes.08G010202' => 'mes', 'Manes.08G010300' => 'mes', 'Manes.09G066500' => 'mes', 'Manes.11G150600' => 'mes', 'Manes.11G150700' => 'mes', 'MBI18_g04979_MAGBIO' => 'mbi', 'MBI18_g04981_MAGBIO' => 'mbi', 'MBI18_g04982_MAGBIO' => 'mbi', 'MBI18_g10198_MAGBIO' => 'mbi', 'MBI18_g38339_MAGBIO' => 'mbi', 'MD00G1033700' => 'mdo', 'MD04G1093700' => 'mdo', 'MD11G1145300' => 'mdo', 'MD12G1113400' => 'mdo', 'Medtr1g063260' => 'mtr', 'Medtr1g063280' => 'mtr', 'Medtr1g063290' => 'mtr', 'Medtr1g063300' => 'mtr', 'Medtr1g063310' => 'mtr', 'Medtr1g063330' => 'mtr', 'Medtr1g063340' => 'mtr', 'Medtr2g095430' => 'mtr', 'Medtr4g057800' => 'mtr', 'Medtr4g057810' => 'mtr', 'Medtr7g101890' => 'mtr', 'Medtr7g101920' => 'mtr', 'MELO3C004966.2' => 'cme', 'MELO3C024464.2' => 'cme', 'MELO3C026914.2' => 'cme', 'Migut.D02260' => 'egut', 'Migut.J00498' => 'egut', 'Migut.J00657' => 'egut', 'Migut.J00659' => 'egut', 'Migut.J00660' => 'egut', 'Migut.L01699' => 'egut', 'Migut.L01702' => 'egut', 'Migut.N02572' => 'egut', 'Nitab4.5_0000063g0060' => 'nta', 'Nitab4.5_0000063g0070' => 'nta', 'Nitab4.5_0000063g0080' => 'nta', 'Nitab4.5_0000063g0100' => 'nta', 'Nitab4.5_0000106g0420' => 'nta', 'Nitab4.5_0000578g0190' => 'nta', 'Nitab4.5_0000814g0030' => 'nta', 'Nitab4.5_0000814g0060' => 'nta', 'Nitab4.5_0000814g0070' => 'nta', 'Nitab4.5_0002044g0010' => 'nta', 'Nitab4.5_0002186g0060' => 'nta', 'Nitab4.5_0002632g0050' => 'nta', 'Nitab4.5_0010279g0030' => 'nta', 'Nitab4.5_0014813g0010' => 'nta', 'Nn2g11581' => 'nnu', 'Nn2g11584' => 'nnu', 'Nn2g11587' => 'nnu', 'Nn2g11588' => 'nnu', 'Nn2g11589' => 'nnu', 'Nn2g11592' => 'nnu', 'Nn2g11593' => 'nnu', 'Nn2g11594' => 'nnu', 'Nn2g13776' => 'nnu', 'Nn2g13779' => 'nnu', 'Nn2g13781' => 'nnu', 'Nn5g28976' => 'nnu', 'Nn6g35149' => 'nnu', 'Oeu005021.1' => 'oeu', 'Oeu018374.1' => 'oeu', 'Oeu018482.1' => 'oeu', 'Oeu045059.1' => 'oeu', 'Peaxi162Scf00311g00081' => 'pax', 'Peaxi162Scf00311g00092' => 'pax', 'Peaxi162Scf00311g00101' => 'pax', 'Peaxi162Scf00351g00051' => 'pax', 'Peaxi162Scf00701g00012' => 'pax', 'Peaxi162Scf01139g00013' => 'pax', 'Peaxi162Scf01159g00023' => 'pax', 'PGR004G2482' => 'pgr', 'PGR094G0001' => 'pgr', 'PGR094G0003' => 'pgr', 'PGR094G0005' => 'pgr', 'PGR102G0286' => 'pgr', 'PGR102G1100' => 'pgr', 'PGSC0003DMG400003884' => 'stu', 'PGSC0003DMG400003885' => 'stu', 'PGSC0003DMG400007162' => 'stu', 'PGSC0003DMG400008070' => 'stu', 'PGSC0003DMG400010473' => 'stu', 'PGSC0003DMG400028186' => 'stu', 'PGSC0003DMG400028187' => 'stu', 'PGSC0003DMG400028188' => 'stu', 'PGSC0003DMG400028189' => 'stu', 'PGSC0003DMG400028299' => 'stu', 'PGSC0003DMG400046444' => 'stu', 'Phvul.001G178900' => 'pvu', 'Phvul.001G179000' => 'pvu', 'Phvul.005G131801' => 'pvu', 'Phvul.007G219300' => 'pvu', 'Phvul.007G219400' => 'pvu', 'Phvul.007G219500' => 'pvu', 'Phvul.007G219600' => 'pvu', 'Phvul.007G219700' => 'pvu', 'Phvul.011G083900' => 'pvu', 'Potri.006G125100' => 'ptr', 'Potri.010G226400' => 'ptr', 'Potri.016G092400' => 'ptr', 'Prupe.6G108300' => 'ppe', 'Prupe.6G108400' => 'ppe', 'Prupe.6G108500' => 'ppe', 'Prupe.6G232300' => 'ppe', 'Psat0s2933g0120' => 'psa', 'Psat0s3241g0120' => 'psa', 'Psat3g042440' => 'psa', 'Psat6g072880' => 'psa', 'Psat6g074240' => 'psa', 'PSO063G5329' => 'pso', 'PSO339G0220' => 'pso', 'PSO339G1978' => 'pso', 'PSO339G2143' => 'pso', 'PSO339G2379' => 'pso', 'PSO339G3689' => 'pso', 'PSO339G4323' => 'pso', 'PSO407G0342' => 'pso', 'PSO801G0027' => 'pso', 'PSO801G0055' => 'pso', 'PSO801G0121' => 'pso', 'PSO801G0647' => 'pso', 'QL01p015848' => 'qlo', 'QL07p043574' => 'qlo', 'RcHm_v2.0_Chr3g0470221' => 'rch', 'RcHm_v2.0_Chr3g0470231' => 'rch', 'RcHm_v2.0_Chr5g0057771' => 'rch', 'RcHm_v2.0_Chr5g0057781' => 'rch', 'Rhsim01G0212200' => 'rsi', 'Rhsim04G0144300' => 'rsi', 'Sabra06G0098800' => 'sbr', 'Sabra16G0098000' => 'sbr', 'SalBow3G0595' => 'sbo', 'SalBow3G3155' => 'sbo', 'SalBow5G3930' => 'sbo', 'SalBow5G4019' => 'sbo', 'Sc02g0001620' => 'sci', 'Sc02g0001630' => 'sci', 'Sc05g0008420' => 'sci', 'Sed0002400' => 'sed', 'Sed0011485' => 'sed', 'Sed0013058' => 'sed', 'SGA_v2.0_scaffold127G34044' => 'sas', 'SGA_v2.0_scaffold40G15518' => 'sas', 'SGA_v2.0_scaffold75G24846' => 'sas', 'Solyc06g074950.1' => 'sly', 'Solyc09g008170.3' => 'sly', 'Solyc09g008175.1' => 'sly', 'Solyc10g084010.1' => 'sly', 'Solyc10g084020.1' => 'sly', 'Solyc10g150147.1' => 'sly', 'Solyc10g150148.1' => 'sly', 'Solyc11g069093.1' => 'sly', 'Sopen06g031350' => 'spe', 'Sopen09g002970' => 'spe', 'Sopen09g002980' => 'spe', 'Sopen10g033460' => 'spe', 'Sopen10g033480' => 'spe', 'Sopen11g027820' => 'spe', 'Sp3g08210' => 'spa', 'Sp4g10880' => 'spa', 'TAR369G0306' => 'tar', 'TAR623G1087' => 'tar', 'TAR633G0735' => 'tar', 'TAR636G1002' => 'tar', 'THA.LOC104816348' => 'tha', 'THA.LOC104824506' => 'tha', 'THA.LOC104826382' => 'tha', 'THA.LOC104827408' => 'tha', 'Thecc.05G065400' => 'tca', 'Thecc.05G065800' => 'tca', 'Thecc.05G065900' => 'tca', 'Thecc.05G066000' => 'tca', 'Thecc.05G066100' => 'tca', 'Thecc.05G066200' => 'tca', 'Thecc.05G066300' => 'tca', 'Thecc.05G066400' => 'tca', 'Thecc.05G066500' => 'tca', 'Thecc.09G348200' => 'tca', 'Thecc.09G348300' => 'tca', 'Thecc.10G121000' => 'tca', 'Thhalv10017524m.g' => 'esa', 'TPR.G11263' => 'tpr', 'TPR.G11265' => 'tpr', 'TPR.G11278' => 'tpr', 'TPR.G11280' => 'tpr', 'TPR.G11281' => 'tpr', 'TPR.G11527' => 'tpr', 'TPR.G6120' => 'tpr', 'TPR.G9366' => 'tpr', 'TPR.G9368' => 'tpr', 'TWI31G1140' => 'twi', 'TWI53G1569' => 'twi', 'TWI79G1515' => 'twi', 'VMungo0720G1097' => 'vmu', 'VMungo0720G1135' => 'vmu', 'VMungo0720G1189' => 'vmu', 'VMungo1080G0562' => 'vmu', 'VMungo1127G0152' => 'vmu', 'VMungo1383G0801' => 'vmu', 'VMungo1383G3396' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001520' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001520' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001520' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001520' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '417', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p26410' => 'bna', 'A05p39180' => 'bna', 'A07p18620' => 'bna', 'Aa31LG5G8060' => 'aar', 'Actinidia03703' => 'ach', 'Ah.14g088460' => 'amhyb', 'AL3G21100' => 'aly', 'AL4G22080' => 'aly', 'Aqoxy1G01162' => 'aox', 'Aqoxy2G01777' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0GB7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQ3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1Y5X8' => 'arhy', 'AT2G28085' => 'ath', 'AT3G09870' => 'ath', 'ATR1136G022' => 'atr', 'Atru.chr3.3549' => 'acertr', 'Atru.chr3.3550' => 'acertr', 'Atru.chr8.1810' => 'acertr', 'Atru.chr8.1811' => 'acertr', 'Atru.chr8.1814' => 'acertr', 'Atru.chr8.1815' => 'acertr', 'Atru.chr8.1816' => 'acertr', 'AUR62012584' => 'cqu', 'AUR62014617' => 'cqu', 'AUR62040347' => 'cqu', 'AUR62042497' => 'cqu', 'BcaB01g03089' => 'bca', 'BcaB02g10136' => 'bca', 'BcaC01g04957' => 'bca', 'BcaC02g10942' => 'bca', 'BcaC05g29498' => 'bca', 'BcaC05g29709' => 'bca', 'BolC3t15514H' => 'bol', 'BolC4t23846H' => 'bol', 'BolC5t34477H' => 'bol', 'BraA03t11856Z' => 'bra', 'BraA05t22707Z' => 'bra', 'BraA07t29575Z' => 'bra', 'C03p31710' => 'bna', 'C04p23440' => 'bna', 'C05p58230' => 'bna', 'CAN.G1169.15' => 'can', 'CAN.G1169.18' => 'can', 'CAN.G1169.20' => 'can', 'CAN.G1169.21' => 'can', 'CAN.G1169.22' => 'can', 'CAN.G1755.6' => 'can', 'CAN.G488.3' => 'can', 'CAN.G488.4' => 'can', 'CAN.G488.5' => 'can', 'CAN.G488.6' => 'can', 'CAN.G546.8' => 'can', 'CAN.G631.64' => 'can', 'CAN.G631.66' => 'can', 'CAN.G631.67' => 'can', 'CAN.G900.35' => 'can', 'CAN.G900.36' => 'can', 'CAN.G900.37' => 'can', 'CANSAT54G2630' => 'cansat', 'CANSAT80G0144' => 'cansat', 'CANSAT80G1990' => 'cansat', 'CARHR084380' => 'chi', 'CARHR120820' => 'chi', 'Carub.0003s0896' => 'cru', 'Carub.0003s0918' => 'cru', 'Carub.0004s0885' => 'cru', 'Ca_01387_v3' => 'car', 'Ca_08859_v3' => 'car', 'Ca_11496_v3' => 'car', 'Cc01_g10550' => 'ccan', 'CDE02G3591' => 'cde', 'CDE02G3783' => 'cde', 'CDE09G0175' => 'cde', 'CDE09G0333' => 'cde', 'Cfa017608' => 'cfa', 'Cfa017609' => 'cfa', 'Cfa017610' => 'cfa', 'Cfa017611' => 'cfa', 'Cfa017613' => 'cfa', 'Ciclev10013118m.g' => 'ccl', 'Ciclev10013167m.g' => 'ccl', 'Ciclev10013305m.g' => 'ccl', 'Ciclev10013517m.g' => 'ccl', 'Ciclev10013732m.g' => 'ccl', 'Ciclev10030059m.g' => 'ccl', 'Ciclev10030078m.g' => 'ccl', 'CiPaw.09G172600' => 'cil', 'CiPaw.13G118700' => 'cil', 'ClCG02G021410' => 'cla', 'ClCG03G002720' => 'cla', 'ClCG04G009290' => 'cla', 'COL.COLO4_26964' => 'col', 'COL.COLO4_26965' => 'col', 'COL.COLO4_26970' => 'col', 'COL.COLO4_26971' => 'col', 'COL.COLO4_34700' => 'col', 'Cpa.g.sc54.76' => 'cpa', 'Cpa.g.sc54.77' => 'cpa', 'Cpa.g.sc54.78' => 'cpa', 'CsaV3_1G013410' => 'csa', 'CsaV3_6G014200' => 'csa', 'CsaV3_6G039880' => 'csa', 'CSS0011505' => 'camsi', 'CSS0032131' => 'camsi', 'CSS0036444' => 'camsi', 'CSS0037855' => 'camsi', 'CSS0042595' => 'camsi', 'CSS0043296' => 'camsi', 'CSS0047069' => 'camsi', 'DCAR_006107' => 'dca', 'DCAR_014994' => 'dca', 'DCAR_020818' => 'dca', 'Dinv34703' => 'din', 'Dinv37315' => 'din', 'Duzib093G1730' => 'dzi', 'Duzib168G1009' => 'dzi', 'Duzib170G1023' => 'dzi', 'ECA233G1003' => 'eca', 'ECA233G1315' => 'eca', 'ECA248G3335' => 'eca', 'EL10Ac7g16626' => 'bvu', 'EL10As6g23706' => 'bvu', 'Eucgr.A01687' => 'egr', 'Eucgr.L01690' => 'egr', 'FAN02G2529' => 'fan', 'FAN05G2097' => 'fan', 'FAN05G3206' => 'fan', 'FAN14G1299' => 'fan', 'FAN14G1618' => 'fan', 'FAN16G0986' => 'fan', 'FAN16G3511' => 'fan', 'FAN21G3490' => 'fan', 'FvH4_3g31150' => 'fve', 'FvH4_6g16370' => 'fve', 'FvH4_6g16380' => 'fve', 'Glyma.03G183000' => 'gma', 'Glyma.03G183100' => 'gma', 'Glyma.03G183200' => 'gma', 'Glyma.10G055600' => 'gma', 'Glyma.10G055800' => 'gma', 'Glyma.10G055900' => 'gma', 'Glyma.10G056000' => 'gma', 'Glyma.10G056200' => 'gma', 'Glyma.10G056300' => 'gma', 'Glyma.10G056400' => 'gma', 'Glyma.10G056500' => 'gma', 'Glyma.10G056600' => 'gma', 'Glyma.11G194800' => 'gma', 'Glyma.12G079300' => 'gma', 'Glyma.12G177400' => 'gma', 'Glyma.13G142700' => 'gma', 'Glyma.13G142800' => 'gma', 'Glyma.13G142900' => 'gma', 'Glyma.13G143000' => 'gma', 'Glyma.13G143100' => 'gma', 'Glyma.13G143200' => 'gma', 'Glyma.13G323300' => 'gma', 'Glyma.19G183700' => 'gma', 'Glyma.19G183800' => 'gma', 'Glyma.19G183900' => 'gma', 'Gohir.A09G146800' => 'ghi', 'Gohir.A09G146900' => 'ghi', 'Gohir.A13G232400' => 'ghi', 'Gohir.D09G142400' => 'ghi', 'Gohir.D09G142420' => 'ghi', 'Gohir.D09G142440' => 'ghi', 'Gohir.D09G142460' => 'ghi', 'Gohir.D09G142480' => 'ghi', 'Gohir.D09G142500' => 'ghi', 'Gohir.D09G142600' => 'ghi', 'Gohir.D13G238000' => 'ghi', 'Gorai.002G162000' => 'gra', 'Gorai.006G163400' => 'gra', 'Gorai.006G163500' => 'gra', 'Gorai.006G163600' => 'gra', 'Gorai.006G163800' => 'gra', 'Gorai.006G163900' => 'gra', 'Gorai.006G164000' => 'gra', 'Gorai.006G164100' => 'gra', 'Gorai.013G268800' => 'gra', 'GSVIVG01031507001' => 'vvi', 'GSVIVG01031508001' => 'vvi', 'HanXRQChr01g0017891' => 'han', 'HanXRQChr01g0017911' => 'han', 'HanXRQChr01g0025331' => 'han', 'HanXRQChr01g0027661' => 'han', 'HanXRQChr08g0215431' => 'han', 'HanXRQChr11g0346191' => 'han', 'HanXRQChr11g0346201' => 'han', 'HanXRQChr11g0350371' => 'han', 'HanXRQChr13g0396601' => 'han', 'Haze_20545' => 'cav', 'Haze_20548' => 'cav', 'Haze_20549' => 'cav', 'Hma1.2p1_0205F.1_g087070' => 'hma', 'Hma1.2p1_0344F.1_g131070' => 'hma', 'Lalb_Chr01g0018711' => 'lal', 'Lalb_Chr20g0112611' => 'lal', 'Lalb_Chr24g0394831' => 'lal', 'Lalb_Chr25g0288991' => 'lal', 'Lj1C207T2' => 'lonja', 'Lj1C207T3' => 'lonja', 'Lj1g0024124' => 'lja', 'Lj3g0008571' => 'lja', 'Lj3g0019702' => 'lja', 'Lsat_1_v5_gn_1_52081' => 'lsa', 'Lsat_1_v5_gn_1_63001' => 'lsa', 'Lsat_1_v5_gn_6_43700' => 'lsa', 'Lsat_1_v5_gn_8_28901' => 'lsa', 'Lsat_1_v5_gn_8_28921' => 'lsa', 'Manes.08G010100' => 'mes', 'Manes.08G010200' => 'mes', 'Manes.08G010202' => 'mes', 'Manes.08G010300' => 'mes', 'Manes.09G066500' => 'mes', 'Manes.11G150600' => 'mes', 'Manes.11G150700' => 'mes', 'MBI18_g04979_MAGBIO' => 'mbi', 'MBI18_g04981_MAGBIO' => 'mbi', 'MBI18_g04982_MAGBIO' => 'mbi', 'MBI18_g10198_MAGBIO' => 'mbi', 'MBI18_g38339_MAGBIO' => 'mbi', 'MD00G1033700' => 'mdo', 'MD04G1093700' => 'mdo', 'MD11G1145300' => 'mdo', 'MD12G1113400' => 'mdo', 'Medtr1g063260' => 'mtr', 'Medtr1g063280' => 'mtr', 'Medtr1g063290' => 'mtr', 'Medtr1g063300' => 'mtr', 'Medtr1g063310' => 'mtr', 'Medtr1g063330' => 'mtr', 'Medtr1g063340' => 'mtr', 'Medtr2g095430' => 'mtr', 'Medtr4g057800' => 'mtr', 'Medtr4g057810' => 'mtr', 'Medtr7g101890' => 'mtr', 'Medtr7g101920' => 'mtr', 'MELO3C004966.2' => 'cme', 'MELO3C024464.2' => 'cme', 'MELO3C026914.2' => 'cme', 'Migut.D02260' => 'egut', 'Migut.J00498' => 'egut', 'Migut.J00657' => 'egut', 'Migut.J00659' => 'egut', 'Migut.J00660' => 'egut', 'Migut.L01699' => 'egut', 'Migut.L01702' => 'egut', 'Migut.N02572' => 'egut', 'Nitab4.5_0000063g0060' => 'nta', 'Nitab4.5_0000063g0070' => 'nta', 'Nitab4.5_0000063g0080' => 'nta', 'Nitab4.5_0000063g0100' => 'nta', 'Nitab4.5_0000106g0420' => 'nta', 'Nitab4.5_0000578g0190' => 'nta', 'Nitab4.5_0000814g0030' => 'nta', 'Nitab4.5_0000814g0060' => 'nta', 'Nitab4.5_0000814g0070' => 'nta', 'Nitab4.5_0002044g0010' => 'nta', 'Nitab4.5_0002186g0060' => 'nta', 'Nitab4.5_0002632g0050' => 'nta', 'Nitab4.5_0010279g0030' => 'nta', 'Nitab4.5_0014813g0010' => 'nta', 'Nn2g11581' => 'nnu', 'Nn2g11584' => 'nnu', 'Nn2g11587' => 'nnu', 'Nn2g11588' => 'nnu', 'Nn2g11589' => 'nnu', 'Nn2g11592' => 'nnu', 'Nn2g11593' => 'nnu', 'Nn2g11594' => 'nnu', 'Nn2g13776' => 'nnu', 'Nn2g13779' => 'nnu', 'Nn2g13781' => 'nnu', 'Nn5g28976' => 'nnu', 'Nn6g35149' => 'nnu', 'Oeu005021.1' => 'oeu', 'Oeu018374.1' => 'oeu', 'Oeu018482.1' => 'oeu', 'Oeu045059.1' => 'oeu', 'Peaxi162Scf00311g00081' => 'pax', 'Peaxi162Scf00311g00092' => 'pax', 'Peaxi162Scf00311g00101' => 'pax', 'Peaxi162Scf00351g00051' => 'pax', 'Peaxi162Scf00701g00012' => 'pax', 'Peaxi162Scf01139g00013' => 'pax', 'Peaxi162Scf01159g00023' => 'pax', 'PGR004G2482' => 'pgr', 'PGR094G0001' => 'pgr', 'PGR094G0003' => 'pgr', 'PGR094G0005' => 'pgr', 'PGR102G0286' => 'pgr', 'PGR102G1100' => 'pgr', 'PGSC0003DMG400003884' => 'stu', 'PGSC0003DMG400003885' => 'stu', 'PGSC0003DMG400007162' => 'stu', 'PGSC0003DMG400008070' => 'stu', 'PGSC0003DMG400010473' => 'stu', 'PGSC0003DMG400028186' => 'stu', 'PGSC0003DMG400028187' => 'stu', 'PGSC0003DMG400028188' => 'stu', 'PGSC0003DMG400028189' => 'stu', 'PGSC0003DMG400028299' => 'stu', 'PGSC0003DMG400046444' => 'stu', 'Phvul.001G178900' => 'pvu', 'Phvul.001G179000' => 'pvu', 'Phvul.005G131801' => 'pvu', 'Phvul.007G219300' => 'pvu', 'Phvul.007G219400' => 'pvu', 'Phvul.007G219500' => 'pvu', 'Phvul.007G219600' => 'pvu', 'Phvul.007G219700' => 'pvu', 'Phvul.011G083900' => 'pvu', 'Potri.006G125100' => 'ptr', 'Potri.010G226400' => 'ptr', 'Potri.016G092400' => 'ptr', 'Prupe.6G108300' => 'ppe', 'Prupe.6G108400' => 'ppe', 'Prupe.6G108500' => 'ppe', 'Prupe.6G232300' => 'ppe', 'Psat0s2933g0120' => 'psa', 'Psat0s3241g0120' => 'psa', 'Psat3g042440' => 'psa', 'Psat6g072880' => 'psa', 'Psat6g074240' => 'psa', 'PSO063G5329' => 'pso', 'PSO339G0220' => 'pso', 'PSO339G1978' => 'pso', 'PSO339G2143' => 'pso', 'PSO339G2379' => 'pso', 'PSO339G3689' => 'pso', 'PSO339G4323' => 'pso', 'PSO407G0342' => 'pso', 'PSO801G0027' => 'pso', 'PSO801G0055' => 'pso', 'PSO801G0121' => 'pso', 'PSO801G0647' => 'pso', 'QL01p015848' => 'qlo', 'QL07p043574' => 'qlo', 'RcHm_v2.0_Chr3g0470221' => 'rch', 'RcHm_v2.0_Chr3g0470231' => 'rch', 'RcHm_v2.0_Chr5g0057771' => 'rch', 'RcHm_v2.0_Chr5g0057781' => 'rch', 'Rhsim01G0212200' => 'rsi', 'Rhsim04G0144300' => 'rsi', 'Sabra06G0098800' => 'sbr', 'Sabra16G0098000' => 'sbr', 'SalBow3G0595' => 'sbo', 'SalBow3G3155' => 'sbo', 'SalBow5G3930' => 'sbo', 'SalBow5G4019' => 'sbo', 'Sc02g0001620' => 'sci', 'Sc02g0001630' => 'sci', 'Sc05g0008420' => 'sci', 'Sed0002400' => 'sed', 'Sed0011485' => 'sed', 'Sed0013058' => 'sed', 'SGA_v2.0_scaffold127G34044' => 'sas', 'SGA_v2.0_scaffold40G15518' => 'sas', 'SGA_v2.0_scaffold75G24846' => 'sas', 'Solyc06g074950.1' => 'sly', 'Solyc09g008170.3' => 'sly', 'Solyc09g008175.1' => 'sly', 'Solyc10g084010.1' => 'sly', 'Solyc10g084020.1' => 'sly', 'Solyc10g150147.1' => 'sly', 'Solyc10g150148.1' => 'sly', 'Solyc11g069093.1' => 'sly', 'Sopen06g031350' => 'spe', 'Sopen09g002970' => 'spe', 'Sopen09g002980' => 'spe', 'Sopen10g033460' => 'spe', 'Sopen10g033480' => 'spe', 'Sopen11g027820' => 'spe', 'Sp3g08210' => 'spa', 'Sp4g10880' => 'spa', 'TAR369G0306' => 'tar', 'TAR623G1087' => 'tar', 'TAR633G0735' => 'tar', 'TAR636G1002' => 'tar', 'THA.LOC104816348' => 'tha', 'THA.LOC104824506' => 'tha', 'THA.LOC104826382' => 'tha', 'THA.LOC104827408' => 'tha', 'Thecc.05G065400' => 'tca', 'Thecc.05G065800' => 'tca', 'Thecc.05G065900' => 'tca', 'Thecc.05G066000' => 'tca', 'Thecc.05G066100' => 'tca', 'Thecc.05G066200' => 'tca', 'Thecc.05G066300' => 'tca', 'Thecc.05G066400' => 'tca', 'Thecc.05G066500' => 'tca', 'Thecc.09G348200' => 'tca', 'Thecc.09G348300' => 'tca', 'Thecc.10G121000' => 'tca', 'Thhalv10017524m.g' => 'esa', 'TPR.G11263' => 'tpr', 'TPR.G11265' => 'tpr', 'TPR.G11278' => 'tpr', 'TPR.G11280' => 'tpr', 'TPR.G11281' => 'tpr', 'TPR.G11527' => 'tpr', 'TPR.G6120' => 'tpr', 'TPR.G9366' => 'tpr', 'TPR.G9368' => 'tpr', 'TWI31G1140' => 'twi', 'TWI53G1569' => 'twi', 'TWI79G1515' => 'twi', 'VMungo0720G1097' => 'vmu', 'VMungo0720G1135' => 'vmu', 'VMungo0720G1189' => 'vmu', 'VMungo1080G0562' => 'vmu', 'VMungo1127G0152' => 'vmu', 'VMungo1383G0801' => 'vmu', 'VMungo1383G3396' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001520', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001520' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '417', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001520' ) ), 'genes' => array( 'A03p26410' => 'bna', 'A05p39180' => 'bna', 'A07p18620' => 'bna', 'Aa31LG5G8060' => 'aar', 'Actinidia03703' => 'ach', 'Ah.14g088460' => 'amhyb', 'AL3G21100' => 'aly', 'AL4G22080' => 'aly', 'Aqoxy1G01162' => 'aox', 'Aqoxy2G01777' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0GB7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQ3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1Y5X8' => 'arhy', 'AT2G28085' => 'ath', 'AT3G09870' => 'ath', 'ATR1136G022' => 'atr', 'Atru.chr3.3549' => 'acertr', 'Atru.chr3.3550' => 'acertr', 'Atru.chr8.1810' => 'acertr', 'Atru.chr8.1811' => 'acertr', 'Atru.chr8.1814' => 'acertr', 'Atru.chr8.1815' => 'acertr', 'Atru.chr8.1816' => 'acertr', 'AUR62012584' => 'cqu', 'AUR62014617' => 'cqu', 'AUR62040347' => 'cqu', 'AUR62042497' => 'cqu', 'BcaB01g03089' => 'bca', 'BcaB02g10136' => 'bca', 'BcaC01g04957' => 'bca', 'BcaC02g10942' => 'bca', 'BcaC05g29498' => 'bca', 'BcaC05g29709' => 'bca', 'BolC3t15514H' => 'bol', 'BolC4t23846H' => 'bol', 'BolC5t34477H' => 'bol', 'BraA03t11856Z' => 'bra', 'BraA05t22707Z' => 'bra', 'BraA07t29575Z' => 'bra', 'C03p31710' => 'bna', 'C04p23440' => 'bna', 'C05p58230' => 'bna', 'CAN.G1169.15' => 'can', 'CAN.G1169.18' => 'can', 'CAN.G1169.20' => 'can', 'CAN.G1169.21' => 'can', 'CAN.G1169.22' => 'can', 'CAN.G1755.6' => 'can', 'CAN.G488.3' => 'can', 'CAN.G488.4' => 'can', 'CAN.G488.5' => 'can', 'CAN.G488.6' => 'can', 'CAN.G546.8' => 'can', 'CAN.G631.64' => 'can', 'CAN.G631.66' => 'can', 'CAN.G631.67' => 'can', 'CAN.G900.35' => 'can', 'CAN.G900.36' => 'can', 'CAN.G900.37' => 'can', 'CANSAT54G2630' => 'cansat', 'CANSAT80G0144' => 'cansat', 'CANSAT80G1990' => 'cansat', 'CARHR084380' => 'chi', 'CARHR120820' => 'chi', 'Carub.0003s0896' => 'cru', 'Carub.0003s0918' => 'cru', 'Carub.0004s0885' => 'cru', 'Ca_01387_v3' => 'car', 'Ca_08859_v3' => 'car', 'Ca_11496_v3' => 'car', 'Cc01_g10550' => 'ccan', 'CDE02G3591' => 'cde', 'CDE02G3783' => 'cde', 'CDE09G0175' => 'cde', 'CDE09G0333' => 'cde', 'Cfa017608' => 'cfa', 'Cfa017609' => 'cfa', 'Cfa017610' => 'cfa', 'Cfa017611' => 'cfa', 'Cfa017613' => 'cfa', 'Ciclev10013118m.g' => 'ccl', 'Ciclev10013167m.g' => 'ccl', 'Ciclev10013305m.g' => 'ccl', 'Ciclev10013517m.g' => 'ccl', 'Ciclev10013732m.g' => 'ccl', 'Ciclev10030059m.g' => 'ccl', 'Ciclev10030078m.g' => 'ccl', 'CiPaw.09G172600' => 'cil', 'CiPaw.13G118700' => 'cil', 'ClCG02G021410' => 'cla', 'ClCG03G002720' => 'cla', 'ClCG04G009290' => 'cla', 'COL.COLO4_26964' => 'col', 'COL.COLO4_26965' => 'col', 'COL.COLO4_26970' => 'col', 'COL.COLO4_26971' => 'col', 'COL.COLO4_34700' => 'col', 'Cpa.g.sc54.76' => 'cpa', 'Cpa.g.sc54.77' => 'cpa', 'Cpa.g.sc54.78' => 'cpa', 'CsaV3_1G013410' => 'csa', 'CsaV3_6G014200' => 'csa', 'CsaV3_6G039880' => 'csa', 'CSS0011505' => 'camsi', 'CSS0032131' => 'camsi', 'CSS0036444' => 'camsi', 'CSS0037855' => 'camsi', 'CSS0042595' => 'camsi', 'CSS0043296' => 'camsi', 'CSS0047069' => 'camsi', 'DCAR_006107' => 'dca', 'DCAR_014994' => 'dca', 'DCAR_020818' => 'dca', 'Dinv34703' => 'din', 'Dinv37315' => 'din', 'Duzib093G1730' => 'dzi', 'Duzib168G1009' => 'dzi', 'Duzib170G1023' => 'dzi', 'ECA233G1003' => 'eca', 'ECA233G1315' => 'eca', 'ECA248G3335' => 'eca', 'EL10Ac7g16626' => 'bvu', 'EL10As6g23706' => 'bvu', 'Eucgr.A01687' => 'egr', 'Eucgr.L01690' => 'egr', 'FAN02G2529' => 'fan', 'FAN05G2097' => 'fan', 'FAN05G3206' => 'fan', 'FAN14G1299' => 'fan', 'FAN14G1618' => 'fan', 'FAN16G0986' => 'fan', 'FAN16G3511' => 'fan', 'FAN21G3490' => 'fan', 'FvH4_3g31150' => 'fve', 'FvH4_6g16370' => 'fve', 'FvH4_6g16380' => 'fve', 'Glyma.03G183000' => 'gma', 'Glyma.03G183100' => 'gma', 'Glyma.03G183200' => 'gma', 'Glyma.10G055600' => 'gma', 'Glyma.10G055800' => 'gma', 'Glyma.10G055900' => 'gma', 'Glyma.10G056000' => 'gma', 'Glyma.10G056200' => 'gma', 'Glyma.10G056300' => 'gma', 'Glyma.10G056400' => 'gma', 'Glyma.10G056500' => 'gma', 'Glyma.10G056600' => 'gma', 'Glyma.11G194800' => 'gma', 'Glyma.12G079300' => 'gma', 'Glyma.12G177400' => 'gma', 'Glyma.13G142700' => 'gma', 'Glyma.13G142800' => 'gma', 'Glyma.13G142900' => 'gma', 'Glyma.13G143000' => 'gma', 'Glyma.13G143100' => 'gma', 'Glyma.13G143200' => 'gma', 'Glyma.13G323300' => 'gma', 'Glyma.19G183700' => 'gma', 'Glyma.19G183800' => 'gma', 'Glyma.19G183900' => 'gma', 'Gohir.A09G146800' => 'ghi', 'Gohir.A09G146900' => 'ghi', 'Gohir.A13G232400' => 'ghi', 'Gohir.D09G142400' => 'ghi', 'Gohir.D09G142420' => 'ghi', 'Gohir.D09G142440' => 'ghi', 'Gohir.D09G142460' => 'ghi', 'Gohir.D09G142480' => 'ghi', 'Gohir.D09G142500' => 'ghi', 'Gohir.D09G142600' => 'ghi', 'Gohir.D13G238000' => 'ghi', 'Gorai.002G162000' => 'gra', 'Gorai.006G163400' => 'gra', 'Gorai.006G163500' => 'gra', 'Gorai.006G163600' => 'gra', 'Gorai.006G163800' => 'gra', 'Gorai.006G163900' => 'gra', 'Gorai.006G164000' => 'gra', 'Gorai.006G164100' => 'gra', 'Gorai.013G268800' => 'gra', 'GSVIVG01031507001' => 'vvi', 'GSVIVG01031508001' => 'vvi', 'HanXRQChr01g0017891' => 'han', 'HanXRQChr01g0017911' => 'han', 'HanXRQChr01g0025331' => 'han', 'HanXRQChr01g0027661' => 'han', 'HanXRQChr08g0215431' => 'han', 'HanXRQChr11g0346191' => 'han', 'HanXRQChr11g0346201' => 'han', 'HanXRQChr11g0350371' => 'han', 'HanXRQChr13g0396601' => 'han', 'Haze_20545' => 'cav', 'Haze_20548' => 'cav', 'Haze_20549' => 'cav', 'Hma1.2p1_0205F.1_g087070' => 'hma', 'Hma1.2p1_0344F.1_g131070' => 'hma', 'Lalb_Chr01g0018711' => 'lal', 'Lalb_Chr20g0112611' => 'lal', 'Lalb_Chr24g0394831' => 'lal', 'Lalb_Chr25g0288991' => 'lal', 'Lj1C207T2' => 'lonja', 'Lj1C207T3' => 'lonja', 'Lj1g0024124' => 'lja', 'Lj3g0008571' => 'lja', 'Lj3g0019702' => 'lja', 'Lsat_1_v5_gn_1_52081' => 'lsa', 'Lsat_1_v5_gn_1_63001' => 'lsa', 'Lsat_1_v5_gn_6_43700' => 'lsa', 'Lsat_1_v5_gn_8_28901' => 'lsa', 'Lsat_1_v5_gn_8_28921' => 'lsa', 'Manes.08G010100' => 'mes', 'Manes.08G010200' => 'mes', 'Manes.08G010202' => 'mes', 'Manes.08G010300' => 'mes', 'Manes.09G066500' => 'mes', 'Manes.11G150600' => 'mes', 'Manes.11G150700' => 'mes', 'MBI18_g04979_MAGBIO' => 'mbi', 'MBI18_g04981_MAGBIO' => 'mbi', 'MBI18_g04982_MAGBIO' => 'mbi', 'MBI18_g10198_MAGBIO' => 'mbi', 'MBI18_g38339_MAGBIO' => 'mbi', 'MD00G1033700' => 'mdo', 'MD04G1093700' => 'mdo', 'MD11G1145300' => 'mdo', 'MD12G1113400' => 'mdo', 'Medtr1g063260' => 'mtr', 'Medtr1g063280' => 'mtr', 'Medtr1g063290' => 'mtr', 'Medtr1g063300' => 'mtr', 'Medtr1g063310' => 'mtr', 'Medtr1g063330' => 'mtr', 'Medtr1g063340' => 'mtr', 'Medtr2g095430' => 'mtr', 'Medtr4g057800' => 'mtr', 'Medtr4g057810' => 'mtr', 'Medtr7g101890' => 'mtr', 'Medtr7g101920' => 'mtr', 'MELO3C004966.2' => 'cme', 'MELO3C024464.2' => 'cme', 'MELO3C026914.2' => 'cme', 'Migut.D02260' => 'egut', 'Migut.J00498' => 'egut', 'Migut.J00657' => 'egut', 'Migut.J00659' => 'egut', 'Migut.J00660' => 'egut', 'Migut.L01699' => 'egut', 'Migut.L01702' => 'egut', 'Migut.N02572' => 'egut', 'Nitab4.5_0000063g0060' => 'nta', 'Nitab4.5_0000063g0070' => 'nta', 'Nitab4.5_0000063g0080' => 'nta', 'Nitab4.5_0000063g0100' => 'nta', 'Nitab4.5_0000106g0420' => 'nta', 'Nitab4.5_0000578g0190' => 'nta', 'Nitab4.5_0000814g0030' => 'nta', 'Nitab4.5_0000814g0060' => 'nta', 'Nitab4.5_0000814g0070' => 'nta', 'Nitab4.5_0002044g0010' => 'nta', 'Nitab4.5_0002186g0060' => 'nta', 'Nitab4.5_0002632g0050' => 'nta', 'Nitab4.5_0010279g0030' => 'nta', 'Nitab4.5_0014813g0010' => 'nta', 'Nn2g11581' => 'nnu', 'Nn2g11584' => 'nnu', 'Nn2g11587' => 'nnu', 'Nn2g11588' => 'nnu', 'Nn2g11589' => 'nnu', 'Nn2g11592' => 'nnu', 'Nn2g11593' => 'nnu', 'Nn2g11594' => 'nnu', 'Nn2g13776' => 'nnu', 'Nn2g13779' => 'nnu', 'Nn2g13781' => 'nnu', 'Nn5g28976' => 'nnu', 'Nn6g35149' => 'nnu', 'Oeu005021.1' => 'oeu', 'Oeu018374.1' => 'oeu', 'Oeu018482.1' => 'oeu', 'Oeu045059.1' => 'oeu', 'Peaxi162Scf00311g00081' => 'pax', 'Peaxi162Scf00311g00092' => 'pax', 'Peaxi162Scf00311g00101' => 'pax', 'Peaxi162Scf00351g00051' => 'pax', 'Peaxi162Scf00701g00012' => 'pax', 'Peaxi162Scf01139g00013' => 'pax', 'Peaxi162Scf01159g00023' => 'pax', 'PGR004G2482' => 'pgr', 'PGR094G0001' => 'pgr', 'PGR094G0003' => 'pgr', 'PGR094G0005' => 'pgr', 'PGR102G0286' => 'pgr', 'PGR102G1100' => 'pgr', 'PGSC0003DMG400003884' => 'stu', 'PGSC0003DMG400003885' => 'stu', 'PGSC0003DMG400007162' => 'stu', 'PGSC0003DMG400008070' => 'stu', 'PGSC0003DMG400010473' => 'stu', 'PGSC0003DMG400028186' => 'stu', 'PGSC0003DMG400028187' => 'stu', 'PGSC0003DMG400028188' => 'stu', 'PGSC0003DMG400028189' => 'stu', 'PGSC0003DMG400028299' => 'stu', 'PGSC0003DMG400046444' => 'stu', 'Phvul.001G178900' => 'pvu', 'Phvul.001G179000' => 'pvu', 'Phvul.005G131801' => 'pvu', 'Phvul.007G219300' => 'pvu', 'Phvul.007G219400' => 'pvu', 'Phvul.007G219500' => 'pvu', 'Phvul.007G219600' => 'pvu', 'Phvul.007G219700' => 'pvu', 'Phvul.011G083900' => 'pvu', 'Potri.006G125100' => 'ptr', 'Potri.010G226400' => 'ptr', 'Potri.016G092400' => 'ptr', 'Prupe.6G108300' => 'ppe', 'Prupe.6G108400' => 'ppe', 'Prupe.6G108500' => 'ppe', 'Prupe.6G232300' => 'ppe', 'Psat0s2933g0120' => 'psa', 'Psat0s3241g0120' => 'psa', 'Psat3g042440' => 'psa', 'Psat6g072880' => 'psa', 'Psat6g074240' => 'psa', 'PSO063G5329' => 'pso', 'PSO339G0220' => 'pso', 'PSO339G1978' => 'pso', 'PSO339G2143' => 'pso', 'PSO339G2379' => 'pso', 'PSO339G3689' => 'pso', 'PSO339G4323' => 'pso', 'PSO407G0342' => 'pso', 'PSO801G0027' => 'pso', 'PSO801G0055' => 'pso', 'PSO801G0121' => 'pso', 'PSO801G0647' => 'pso', 'QL01p015848' => 'qlo', 'QL07p043574' => 'qlo', 'RcHm_v2.0_Chr3g0470221' => 'rch', 'RcHm_v2.0_Chr3g0470231' => 'rch', 'RcHm_v2.0_Chr5g0057771' => 'rch', 'RcHm_v2.0_Chr5g0057781' => 'rch', 'Rhsim01G0212200' => 'rsi', 'Rhsim04G0144300' => 'rsi', 'Sabra06G0098800' => 'sbr', 'Sabra16G0098000' => 'sbr', 'SalBow3G0595' => 'sbo', 'SalBow3G3155' => 'sbo', 'SalBow5G3930' => 'sbo', 'SalBow5G4019' => 'sbo', 'Sc02g0001620' => 'sci', 'Sc02g0001630' => 'sci', 'Sc05g0008420' => 'sci', 'Sed0002400' => 'sed', 'Sed0011485' => 'sed', 'Sed0013058' => 'sed', 'SGA_v2.0_scaffold127G34044' => 'sas', 'SGA_v2.0_scaffold40G15518' => 'sas', 'SGA_v2.0_scaffold75G24846' => 'sas', 'Solyc06g074950.1' => 'sly', 'Solyc09g008170.3' => 'sly', 'Solyc09g008175.1' => 'sly', 'Solyc10g084010.1' => 'sly', 'Solyc10g084020.1' => 'sly', 'Solyc10g150147.1' => 'sly', 'Solyc10g150148.1' => 'sly', 'Solyc11g069093.1' => 'sly', 'Sopen06g031350' => 'spe', 'Sopen09g002970' => 'spe', 'Sopen09g002980' => 'spe', 'Sopen10g033460' => 'spe', 'Sopen10g033480' => 'spe', 'Sopen11g027820' => 'spe', 'Sp3g08210' => 'spa', 'Sp4g10880' => 'spa', 'TAR369G0306' => 'tar', 'TAR623G1087' => 'tar', 'TAR633G0735' => 'tar', 'TAR636G1002' => 'tar', 'THA.LOC104816348' => 'tha', 'THA.LOC104824506' => 'tha', 'THA.LOC104826382' => 'tha', 'THA.LOC104827408' => 'tha', 'Thecc.05G065400' => 'tca', 'Thecc.05G065800' => 'tca', 'Thecc.05G065900' => 'tca', 'Thecc.05G066000' => 'tca', 'Thecc.05G066100' => 'tca', 'Thecc.05G066200' => 'tca', 'Thecc.05G066300' => 'tca', 'Thecc.05G066400' => 'tca', 'Thecc.05G066500' => 'tca', 'Thecc.09G348200' => 'tca', 'Thecc.09G348300' => 'tca', 'Thecc.10G121000' => 'tca', 'Thhalv10017524m.g' => 'esa', 'TPR.G11263' => 'tpr', 'TPR.G11265' => 'tpr', 'TPR.G11278' => 'tpr', 'TPR.G11280' => 'tpr', 'TPR.G11281' => 'tpr', 'TPR.G11527' => 'tpr', 'TPR.G6120' => 'tpr', 'TPR.G9366' => 'tpr', 'TPR.G9368' => 'tpr', 'TWI31G1140' => 'twi', 'TWI53G1569' => 'twi', 'TWI79G1515' => 'twi', 'VMungo0720G1097' => 'vmu', 'VMungo0720G1135' => 'vmu', 'VMungo0720G1189' => 'vmu', 'VMungo1080G0562' => 'vmu', 'VMungo1127G0152' => 'vmu', 'VMungo1383G0801' => 'vmu', 'VMungo1383G3396' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001520' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001520' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001520' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001520' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '417', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p26410' => 'bna', 'A05p39180' => 'bna', 'A07p18620' => 'bna', 'Aa31LG5G8060' => 'aar', 'Actinidia03703' => 'ach', 'Ah.14g088460' => 'amhyb', 'AL3G21100' => 'aly', 'AL4G22080' => 'aly', 'Aqoxy1G01162' => 'aox', 'Aqoxy2G01777' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0GB7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQ3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1Y5X8' => 'arhy', 'AT2G28085' => 'ath', 'AT3G09870' => 'ath', 'ATR1136G022' => 'atr', 'Atru.chr3.3549' => 'acertr', 'Atru.chr3.3550' => 'acertr', 'Atru.chr8.1810' => 'acertr', 'Atru.chr8.1811' => 'acertr', 'Atru.chr8.1814' => 'acertr', 'Atru.chr8.1815' => 'acertr', 'Atru.chr8.1816' => 'acertr', 'AUR62012584' => 'cqu', 'AUR62014617' => 'cqu', 'AUR62040347' => 'cqu', 'AUR62042497' => 'cqu', 'BcaB01g03089' => 'bca', 'BcaB02g10136' => 'bca', 'BcaC01g04957' => 'bca', 'BcaC02g10942' => 'bca', 'BcaC05g29498' => 'bca', 'BcaC05g29709' => 'bca', 'BolC3t15514H' => 'bol', 'BolC4t23846H' => 'bol', 'BolC5t34477H' => 'bol', 'BraA03t11856Z' => 'bra', 'BraA05t22707Z' => 'bra', 'BraA07t29575Z' => 'bra', 'C03p31710' => 'bna', 'C04p23440' => 'bna', 'C05p58230' => 'bna', 'CAN.G1169.15' => 'can', 'CAN.G1169.18' => 'can', 'CAN.G1169.20' => 'can', 'CAN.G1169.21' => 'can', 'CAN.G1169.22' => 'can', 'CAN.G1755.6' => 'can', 'CAN.G488.3' => 'can', 'CAN.G488.4' => 'can', 'CAN.G488.5' => 'can', 'CAN.G488.6' => 'can', 'CAN.G546.8' => 'can', 'CAN.G631.64' => 'can', 'CAN.G631.66' => 'can', 'CAN.G631.67' => 'can', 'CAN.G900.35' => 'can', 'CAN.G900.36' => 'can', 'CAN.G900.37' => 'can', 'CANSAT54G2630' => 'cansat', 'CANSAT80G0144' => 'cansat', 'CANSAT80G1990' => 'cansat', 'CARHR084380' => 'chi', 'CARHR120820' => 'chi', 'Carub.0003s0896' => 'cru', 'Carub.0003s0918' => 'cru', 'Carub.0004s0885' => 'cru', 'Ca_01387_v3' => 'car', 'Ca_08859_v3' => 'car', 'Ca_11496_v3' => 'car', 'Cc01_g10550' => 'ccan', 'CDE02G3591' => 'cde', 'CDE02G3783' => 'cde', 'CDE09G0175' => 'cde', 'CDE09G0333' => 'cde', 'Cfa017608' => 'cfa', 'Cfa017609' => 'cfa', 'Cfa017610' => 'cfa', 'Cfa017611' => 'cfa', 'Cfa017613' => 'cfa', 'Ciclev10013118m.g' => 'ccl', 'Ciclev10013167m.g' => 'ccl', 'Ciclev10013305m.g' => 'ccl', 'Ciclev10013517m.g' => 'ccl', 'Ciclev10013732m.g' => 'ccl', 'Ciclev10030059m.g' => 'ccl', 'Ciclev10030078m.g' => 'ccl', 'CiPaw.09G172600' => 'cil', 'CiPaw.13G118700' => 'cil', 'ClCG02G021410' => 'cla', 'ClCG03G002720' => 'cla', 'ClCG04G009290' => 'cla', 'COL.COLO4_26964' => 'col', 'COL.COLO4_26965' => 'col', 'COL.COLO4_26970' => 'col', 'COL.COLO4_26971' => 'col', 'COL.COLO4_34700' => 'col', 'Cpa.g.sc54.76' => 'cpa', 'Cpa.g.sc54.77' => 'cpa', 'Cpa.g.sc54.78' => 'cpa', 'CsaV3_1G013410' => 'csa', 'CsaV3_6G014200' => 'csa', 'CsaV3_6G039880' => 'csa', 'CSS0011505' => 'camsi', 'CSS0032131' => 'camsi', 'CSS0036444' => 'camsi', 'CSS0037855' => 'camsi', 'CSS0042595' => 'camsi', 'CSS0043296' => 'camsi', 'CSS0047069' => 'camsi', 'DCAR_006107' => 'dca', 'DCAR_014994' => 'dca', 'DCAR_020818' => 'dca', 'Dinv34703' => 'din', 'Dinv37315' => 'din', 'Duzib093G1730' => 'dzi', 'Duzib168G1009' => 'dzi', 'Duzib170G1023' => 'dzi', 'ECA233G1003' => 'eca', 'ECA233G1315' => 'eca', 'ECA248G3335' => 'eca', 'EL10Ac7g16626' => 'bvu', 'EL10As6g23706' => 'bvu', 'Eucgr.A01687' => 'egr', 'Eucgr.L01690' => 'egr', 'FAN02G2529' => 'fan', 'FAN05G2097' => 'fan', 'FAN05G3206' => 'fan', 'FAN14G1299' => 'fan', 'FAN14G1618' => 'fan', 'FAN16G0986' => 'fan', 'FAN16G3511' => 'fan', 'FAN21G3490' => 'fan', 'FvH4_3g31150' => 'fve', 'FvH4_6g16370' => 'fve', 'FvH4_6g16380' => 'fve', 'Glyma.03G183000' => 'gma', 'Glyma.03G183100' => 'gma', 'Glyma.03G183200' => 'gma', 'Glyma.10G055600' => 'gma', 'Glyma.10G055800' => 'gma', 'Glyma.10G055900' => 'gma', 'Glyma.10G056000' => 'gma', 'Glyma.10G056200' => 'gma', 'Glyma.10G056300' => 'gma', 'Glyma.10G056400' => 'gma', 'Glyma.10G056500' => 'gma', 'Glyma.10G056600' => 'gma', 'Glyma.11G194800' => 'gma', 'Glyma.12G079300' => 'gma', 'Glyma.12G177400' => 'gma', 'Glyma.13G142700' => 'gma', 'Glyma.13G142800' => 'gma', 'Glyma.13G142900' => 'gma', 'Glyma.13G143000' => 'gma', 'Glyma.13G143100' => 'gma', 'Glyma.13G143200' => 'gma', 'Glyma.13G323300' => 'gma', 'Glyma.19G183700' => 'gma', 'Glyma.19G183800' => 'gma', 'Glyma.19G183900' => 'gma', 'Gohir.A09G146800' => 'ghi', 'Gohir.A09G146900' => 'ghi', 'Gohir.A13G232400' => 'ghi', 'Gohir.D09G142400' => 'ghi', 'Gohir.D09G142420' => 'ghi', 'Gohir.D09G142440' => 'ghi', 'Gohir.D09G142460' => 'ghi', 'Gohir.D09G142480' => 'ghi', 'Gohir.D09G142500' => 'ghi', 'Gohir.D09G142600' => 'ghi', 'Gohir.D13G238000' => 'ghi', 'Gorai.002G162000' => 'gra', 'Gorai.006G163400' => 'gra', 'Gorai.006G163500' => 'gra', 'Gorai.006G163600' => 'gra', 'Gorai.006G163800' => 'gra', 'Gorai.006G163900' => 'gra', 'Gorai.006G164000' => 'gra', 'Gorai.006G164100' => 'gra', 'Gorai.013G268800' => 'gra', 'GSVIVG01031507001' => 'vvi', 'GSVIVG01031508001' => 'vvi', 'HanXRQChr01g0017891' => 'han', 'HanXRQChr01g0017911' => 'han', 'HanXRQChr01g0025331' => 'han', 'HanXRQChr01g0027661' => 'han', 'HanXRQChr08g0215431' => 'han', 'HanXRQChr11g0346191' => 'han', 'HanXRQChr11g0346201' => 'han', 'HanXRQChr11g0350371' => 'han', 'HanXRQChr13g0396601' => 'han', 'Haze_20545' => 'cav', 'Haze_20548' => 'cav', 'Haze_20549' => 'cav', 'Hma1.2p1_0205F.1_g087070' => 'hma', 'Hma1.2p1_0344F.1_g131070' => 'hma', 'Lalb_Chr01g0018711' => 'lal', 'Lalb_Chr20g0112611' => 'lal', 'Lalb_Chr24g0394831' => 'lal', 'Lalb_Chr25g0288991' => 'lal', 'Lj1C207T2' => 'lonja', 'Lj1C207T3' => 'lonja', 'Lj1g0024124' => 'lja', 'Lj3g0008571' => 'lja', 'Lj3g0019702' => 'lja', 'Lsat_1_v5_gn_1_52081' => 'lsa', 'Lsat_1_v5_gn_1_63001' => 'lsa', 'Lsat_1_v5_gn_6_43700' => 'lsa', 'Lsat_1_v5_gn_8_28901' => 'lsa', 'Lsat_1_v5_gn_8_28921' => 'lsa', 'Manes.08G010100' => 'mes', 'Manes.08G010200' => 'mes', 'Manes.08G010202' => 'mes', 'Manes.08G010300' => 'mes', 'Manes.09G066500' => 'mes', 'Manes.11G150600' => 'mes', 'Manes.11G150700' => 'mes', 'MBI18_g04979_MAGBIO' => 'mbi', 'MBI18_g04981_MAGBIO' => 'mbi', 'MBI18_g04982_MAGBIO' => 'mbi', 'MBI18_g10198_MAGBIO' => 'mbi', 'MBI18_g38339_MAGBIO' => 'mbi', 'MD00G1033700' => 'mdo', 'MD04G1093700' => 'mdo', 'MD11G1145300' => 'mdo', 'MD12G1113400' => 'mdo', 'Medtr1g063260' => 'mtr', 'Medtr1g063280' => 'mtr', 'Medtr1g063290' => 'mtr', 'Medtr1g063300' => 'mtr', 'Medtr1g063310' => 'mtr', 'Medtr1g063330' => 'mtr', 'Medtr1g063340' => 'mtr', 'Medtr2g095430' => 'mtr', 'Medtr4g057800' => 'mtr', 'Medtr4g057810' => 'mtr', 'Medtr7g101890' => 'mtr', 'Medtr7g101920' => 'mtr', 'MELO3C004966.2' => 'cme', 'MELO3C024464.2' => 'cme', 'MELO3C026914.2' => 'cme', 'Migut.D02260' => 'egut', 'Migut.J00498' => 'egut', 'Migut.J00657' => 'egut', 'Migut.J00659' => 'egut', 'Migut.J00660' => 'egut', 'Migut.L01699' => 'egut', 'Migut.L01702' => 'egut', 'Migut.N02572' => 'egut', 'Nitab4.5_0000063g0060' => 'nta', 'Nitab4.5_0000063g0070' => 'nta', 'Nitab4.5_0000063g0080' => 'nta', 'Nitab4.5_0000063g0100' => 'nta', 'Nitab4.5_0000106g0420' => 'nta', 'Nitab4.5_0000578g0190' => 'nta', 'Nitab4.5_0000814g0030' => 'nta', 'Nitab4.5_0000814g0060' => 'nta', 'Nitab4.5_0000814g0070' => 'nta', 'Nitab4.5_0002044g0010' => 'nta', 'Nitab4.5_0002186g0060' => 'nta', 'Nitab4.5_0002632g0050' => 'nta', 'Nitab4.5_0010279g0030' => 'nta', 'Nitab4.5_0014813g0010' => 'nta', 'Nn2g11581' => 'nnu', 'Nn2g11584' => 'nnu', 'Nn2g11587' => 'nnu', 'Nn2g11588' => 'nnu', 'Nn2g11589' => 'nnu', 'Nn2g11592' => 'nnu', 'Nn2g11593' => 'nnu', 'Nn2g11594' => 'nnu', 'Nn2g13776' => 'nnu', 'Nn2g13779' => 'nnu', 'Nn2g13781' => 'nnu', 'Nn5g28976' => 'nnu', 'Nn6g35149' => 'nnu', 'Oeu005021.1' => 'oeu', 'Oeu018374.1' => 'oeu', 'Oeu018482.1' => 'oeu', 'Oeu045059.1' => 'oeu', 'Peaxi162Scf00311g00081' => 'pax', 'Peaxi162Scf00311g00092' => 'pax', 'Peaxi162Scf00311g00101' => 'pax', 'Peaxi162Scf00351g00051' => 'pax', 'Peaxi162Scf00701g00012' => 'pax', 'Peaxi162Scf01139g00013' => 'pax', 'Peaxi162Scf01159g00023' => 'pax', 'PGR004G2482' => 'pgr', 'PGR094G0001' => 'pgr', 'PGR094G0003' => 'pgr', 'PGR094G0005' => 'pgr', 'PGR102G0286' => 'pgr', 'PGR102G1100' => 'pgr', 'PGSC0003DMG400003884' => 'stu', 'PGSC0003DMG400003885' => 'stu', 'PGSC0003DMG400007162' => 'stu', 'PGSC0003DMG400008070' => 'stu', 'PGSC0003DMG400010473' => 'stu', 'PGSC0003DMG400028186' => 'stu', 'PGSC0003DMG400028187' => 'stu', 'PGSC0003DMG400028188' => 'stu', 'PGSC0003DMG400028189' => 'stu', 'PGSC0003DMG400028299' => 'stu', 'PGSC0003DMG400046444' => 'stu', 'Phvul.001G178900' => 'pvu', 'Phvul.001G179000' => 'pvu', 'Phvul.005G131801' => 'pvu', 'Phvul.007G219300' => 'pvu', 'Phvul.007G219400' => 'pvu', 'Phvul.007G219500' => 'pvu', 'Phvul.007G219600' => 'pvu', 'Phvul.007G219700' => 'pvu', 'Phvul.011G083900' => 'pvu', 'Potri.006G125100' => 'ptr', 'Potri.010G226400' => 'ptr', 'Potri.016G092400' => 'ptr', 'Prupe.6G108300' => 'ppe', 'Prupe.6G108400' => 'ppe', 'Prupe.6G108500' => 'ppe', 'Prupe.6G232300' => 'ppe', 'Psat0s2933g0120' => 'psa', 'Psat0s3241g0120' => 'psa', 'Psat3g042440' => 'psa', 'Psat6g072880' => 'psa', 'Psat6g074240' => 'psa', 'PSO063G5329' => 'pso', 'PSO339G0220' => 'pso', 'PSO339G1978' => 'pso', 'PSO339G2143' => 'pso', 'PSO339G2379' => 'pso', 'PSO339G3689' => 'pso', 'PSO339G4323' => 'pso', 'PSO407G0342' => 'pso', 'PSO801G0027' => 'pso', 'PSO801G0055' => 'pso', 'PSO801G0121' => 'pso', 'PSO801G0647' => 'pso', 'QL01p015848' => 'qlo', 'QL07p043574' => 'qlo', 'RcHm_v2.0_Chr3g0470221' => 'rch', 'RcHm_v2.0_Chr3g0470231' => 'rch', 'RcHm_v2.0_Chr5g0057771' => 'rch', 'RcHm_v2.0_Chr5g0057781' => 'rch', 'Rhsim01G0212200' => 'rsi', 'Rhsim04G0144300' => 'rsi', 'Sabra06G0098800' => 'sbr', 'Sabra16G0098000' => 'sbr', 'SalBow3G0595' => 'sbo', 'SalBow3G3155' => 'sbo', 'SalBow5G3930' => 'sbo', 'SalBow5G4019' => 'sbo', 'Sc02g0001620' => 'sci', 'Sc02g0001630' => 'sci', 'Sc05g0008420' => 'sci', 'Sed0002400' => 'sed', 'Sed0011485' => 'sed', 'Sed0013058' => 'sed', 'SGA_v2.0_scaffold127G34044' => 'sas', 'SGA_v2.0_scaffold40G15518' => 'sas', 'SGA_v2.0_scaffold75G24846' => 'sas', 'Solyc06g074950.1' => 'sly', 'Solyc09g008170.3' => 'sly', 'Solyc09g008175.1' => 'sly', 'Solyc10g084010.1' => 'sly', 'Solyc10g084020.1' => 'sly', 'Solyc10g150147.1' => 'sly', 'Solyc10g150148.1' => 'sly', 'Solyc11g069093.1' => 'sly', 'Sopen06g031350' => 'spe', 'Sopen09g002970' => 'spe', 'Sopen09g002980' => 'spe', 'Sopen10g033460' => 'spe', 'Sopen10g033480' => 'spe', 'Sopen11g027820' => 'spe', 'Sp3g08210' => 'spa', 'Sp4g10880' => 'spa', 'TAR369G0306' => 'tar', 'TAR623G1087' => 'tar', 'TAR633G0735' => 'tar', 'TAR636G1002' => 'tar', 'THA.LOC104816348' => 'tha', 'THA.LOC104824506' => 'tha', 'THA.LOC104826382' => 'tha', 'THA.LOC104827408' => 'tha', 'Thecc.05G065400' => 'tca', 'Thecc.05G065800' => 'tca', 'Thecc.05G065900' => 'tca', 'Thecc.05G066000' => 'tca', 'Thecc.05G066100' => 'tca', 'Thecc.05G066200' => 'tca', 'Thecc.05G066300' => 'tca', 'Thecc.05G066400' => 'tca', 'Thecc.05G066500' => 'tca', 'Thecc.09G348200' => 'tca', 'Thecc.09G348300' => 'tca', 'Thecc.10G121000' => 'tca', 'Thhalv10017524m.g' => 'esa', 'TPR.G11263' => 'tpr', 'TPR.G11265' => 'tpr', 'TPR.G11278' => 'tpr', 'TPR.G11280' => 'tpr', 'TPR.G11281' => 'tpr', 'TPR.G11527' => 'tpr', 'TPR.G6120' => 'tpr', 'TPR.G9366' => 'tpr', 'TPR.G9368' => 'tpr', 'TWI31G1140' => 'twi', 'TWI53G1569' => 'twi', 'TWI79G1515' => 'twi', 'VMungo0720G1097' => 'vmu', 'VMungo0720G1135' => 'vmu', 'VMungo0720G1189' => 'vmu', 'VMungo1080G0562' => 'vmu', 'VMungo1127G0152' => 'vmu', 'VMungo1383G0801' => 'vmu', 'VMungo1383G3396' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001520', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001520' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '417', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001520' ) ), 'genes' => array( 'A03p26410' => 'bna', 'A05p39180' => 'bna', 'A07p18620' => 'bna', 'Aa31LG5G8060' => 'aar', 'Actinidia03703' => 'ach', 'Ah.14g088460' => 'amhyb', 'AL3G21100' => 'aly', 'AL4G22080' => 'aly', 'Aqoxy1G01162' => 'aox', 'Aqoxy2G01777' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0GB7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQ3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1Y5X8' => 'arhy', 'AT2G28085' => 'ath', 'AT3G09870' => 'ath', 'ATR1136G022' => 'atr', 'Atru.chr3.3549' => 'acertr', 'Atru.chr3.3550' => 'acertr', 'Atru.chr8.1810' => 'acertr', 'Atru.chr8.1811' => 'acertr', 'Atru.chr8.1814' => 'acertr', 'Atru.chr8.1815' => 'acertr', 'Atru.chr8.1816' => 'acertr', 'AUR62012584' => 'cqu', 'AUR62014617' => 'cqu', 'AUR62040347' => 'cqu', 'AUR62042497' => 'cqu', 'BcaB01g03089' => 'bca', 'BcaB02g10136' => 'bca', 'BcaC01g04957' => 'bca', 'BcaC02g10942' => 'bca', 'BcaC05g29498' => 'bca', 'BcaC05g29709' => 'bca', 'BolC3t15514H' => 'bol', 'BolC4t23846H' => 'bol', 'BolC5t34477H' => 'bol', 'BraA03t11856Z' => 'bra', 'BraA05t22707Z' => 'bra', 'BraA07t29575Z' => 'bra', 'C03p31710' => 'bna', 'C04p23440' => 'bna', 'C05p58230' => 'bna', 'CAN.G1169.15' => 'can', 'CAN.G1169.18' => 'can', 'CAN.G1169.20' => 'can', 'CAN.G1169.21' => 'can', 'CAN.G1169.22' => 'can', 'CAN.G1755.6' => 'can', 'CAN.G488.3' => 'can', 'CAN.G488.4' => 'can', 'CAN.G488.5' => 'can', 'CAN.G488.6' => 'can', 'CAN.G546.8' => 'can', 'CAN.G631.64' => 'can', 'CAN.G631.66' => 'can', 'CAN.G631.67' => 'can', 'CAN.G900.35' => 'can', 'CAN.G900.36' => 'can', 'CAN.G900.37' => 'can', 'CANSAT54G2630' => 'cansat', 'CANSAT80G0144' => 'cansat', 'CANSAT80G1990' => 'cansat', 'CARHR084380' => 'chi', 'CARHR120820' => 'chi', 'Carub.0003s0896' => 'cru', 'Carub.0003s0918' => 'cru', 'Carub.0004s0885' => 'cru', 'Ca_01387_v3' => 'car', 'Ca_08859_v3' => 'car', 'Ca_11496_v3' => 'car', 'Cc01_g10550' => 'ccan', 'CDE02G3591' => 'cde', 'CDE02G3783' => 'cde', 'CDE09G0175' => 'cde', 'CDE09G0333' => 'cde', 'Cfa017608' => 'cfa', 'Cfa017609' => 'cfa', 'Cfa017610' => 'cfa', 'Cfa017611' => 'cfa', 'Cfa017613' => 'cfa', 'Ciclev10013118m.g' => 'ccl', 'Ciclev10013167m.g' => 'ccl', 'Ciclev10013305m.g' => 'ccl', 'Ciclev10013517m.g' => 'ccl', 'Ciclev10013732m.g' => 'ccl', 'Ciclev10030059m.g' => 'ccl', 'Ciclev10030078m.g' => 'ccl', 'CiPaw.09G172600' => 'cil', 'CiPaw.13G118700' => 'cil', 'ClCG02G021410' => 'cla', 'ClCG03G002720' => 'cla', 'ClCG04G009290' => 'cla', 'COL.COLO4_26964' => 'col', 'COL.COLO4_26965' => 'col', 'COL.COLO4_26970' => 'col', 'COL.COLO4_26971' => 'col', 'COL.COLO4_34700' => 'col', 'Cpa.g.sc54.76' => 'cpa', 'Cpa.g.sc54.77' => 'cpa', 'Cpa.g.sc54.78' => 'cpa', 'CsaV3_1G013410' => 'csa', 'CsaV3_6G014200' => 'csa', 'CsaV3_6G039880' => 'csa', 'CSS0011505' => 'camsi', 'CSS0032131' => 'camsi', 'CSS0036444' => 'camsi', 'CSS0037855' => 'camsi', 'CSS0042595' => 'camsi', 'CSS0043296' => 'camsi', 'CSS0047069' => 'camsi', 'DCAR_006107' => 'dca', 'DCAR_014994' => 'dca', 'DCAR_020818' => 'dca', 'Dinv34703' => 'din', 'Dinv37315' => 'din', 'Duzib093G1730' => 'dzi', 'Duzib168G1009' => 'dzi', 'Duzib170G1023' => 'dzi', 'ECA233G1003' => 'eca', 'ECA233G1315' => 'eca', 'ECA248G3335' => 'eca', 'EL10Ac7g16626' => 'bvu', 'EL10As6g23706' => 'bvu', 'Eucgr.A01687' => 'egr', 'Eucgr.L01690' => 'egr', 'FAN02G2529' => 'fan', 'FAN05G2097' => 'fan', 'FAN05G3206' => 'fan', 'FAN14G1299' => 'fan', 'FAN14G1618' => 'fan', 'FAN16G0986' => 'fan', 'FAN16G3511' => 'fan', 'FAN21G3490' => 'fan', 'FvH4_3g31150' => 'fve', 'FvH4_6g16370' => 'fve', 'FvH4_6g16380' => 'fve', 'Glyma.03G183000' => 'gma', 'Glyma.03G183100' => 'gma', 'Glyma.03G183200' => 'gma', 'Glyma.10G055600' => 'gma', 'Glyma.10G055800' => 'gma', 'Glyma.10G055900' => 'gma', 'Glyma.10G056000' => 'gma', 'Glyma.10G056200' => 'gma', 'Glyma.10G056300' => 'gma', 'Glyma.10G056400' => 'gma', 'Glyma.10G056500' => 'gma', 'Glyma.10G056600' => 'gma', 'Glyma.11G194800' => 'gma', 'Glyma.12G079300' => 'gma', 'Glyma.12G177400' => 'gma', 'Glyma.13G142700' => 'gma', 'Glyma.13G142800' => 'gma', 'Glyma.13G142900' => 'gma', 'Glyma.13G143000' => 'gma', 'Glyma.13G143100' => 'gma', 'Glyma.13G143200' => 'gma', 'Glyma.13G323300' => 'gma', 'Glyma.19G183700' => 'gma', 'Glyma.19G183800' => 'gma', 'Glyma.19G183900' => 'gma', 'Gohir.A09G146800' => 'ghi', 'Gohir.A09G146900' => 'ghi', 'Gohir.A13G232400' => 'ghi', 'Gohir.D09G142400' => 'ghi', 'Gohir.D09G142420' => 'ghi', 'Gohir.D09G142440' => 'ghi', 'Gohir.D09G142460' => 'ghi', 'Gohir.D09G142480' => 'ghi', 'Gohir.D09G142500' => 'ghi', 'Gohir.D09G142600' => 'ghi', 'Gohir.D13G238000' => 'ghi', 'Gorai.002G162000' => 'gra', 'Gorai.006G163400' => 'gra', 'Gorai.006G163500' => 'gra', 'Gorai.006G163600' => 'gra', 'Gorai.006G163800' => 'gra', 'Gorai.006G163900' => 'gra', 'Gorai.006G164000' => 'gra', 'Gorai.006G164100' => 'gra', 'Gorai.013G268800' => 'gra', 'GSVIVG01031507001' => 'vvi', 'GSVIVG01031508001' => 'vvi', 'HanXRQChr01g0017891' => 'han', 'HanXRQChr01g0017911' => 'han', 'HanXRQChr01g0025331' => 'han', 'HanXRQChr01g0027661' => 'han', 'HanXRQChr08g0215431' => 'han', 'HanXRQChr11g0346191' => 'han', 'HanXRQChr11g0346201' => 'han', 'HanXRQChr11g0350371' => 'han', 'HanXRQChr13g0396601' => 'han', 'Haze_20545' => 'cav', 'Haze_20548' => 'cav', 'Haze_20549' => 'cav', 'Hma1.2p1_0205F.1_g087070' => 'hma', 'Hma1.2p1_0344F.1_g131070' => 'hma', 'Lalb_Chr01g0018711' => 'lal', 'Lalb_Chr20g0112611' => 'lal', 'Lalb_Chr24g0394831' => 'lal', 'Lalb_Chr25g0288991' => 'lal', 'Lj1C207T2' => 'lonja', 'Lj1C207T3' => 'lonja', 'Lj1g0024124' => 'lja', 'Lj3g0008571' => 'lja', 'Lj3g0019702' => 'lja', 'Lsat_1_v5_gn_1_52081' => 'lsa', 'Lsat_1_v5_gn_1_63001' => 'lsa', 'Lsat_1_v5_gn_6_43700' => 'lsa', 'Lsat_1_v5_gn_8_28901' => 'lsa', 'Lsat_1_v5_gn_8_28921' => 'lsa', 'Manes.08G010100' => 'mes', 'Manes.08G010200' => 'mes', 'Manes.08G010202' => 'mes', 'Manes.08G010300' => 'mes', 'Manes.09G066500' => 'mes', 'Manes.11G150600' => 'mes', 'Manes.11G150700' => 'mes', 'MBI18_g04979_MAGBIO' => 'mbi', 'MBI18_g04981_MAGBIO' => 'mbi', 'MBI18_g04982_MAGBIO' => 'mbi', 'MBI18_g10198_MAGBIO' => 'mbi', 'MBI18_g38339_MAGBIO' => 'mbi', 'MD00G1033700' => 'mdo', 'MD04G1093700' => 'mdo', 'MD11G1145300' => 'mdo', 'MD12G1113400' => 'mdo', 'Medtr1g063260' => 'mtr', 'Medtr1g063280' => 'mtr', 'Medtr1g063290' => 'mtr', 'Medtr1g063300' => 'mtr', 'Medtr1g063310' => 'mtr', 'Medtr1g063330' => 'mtr', 'Medtr1g063340' => 'mtr', 'Medtr2g095430' => 'mtr', 'Medtr4g057800' => 'mtr', 'Medtr4g057810' => 'mtr', 'Medtr7g101890' => 'mtr', 'Medtr7g101920' => 'mtr', 'MELO3C004966.2' => 'cme', 'MELO3C024464.2' => 'cme', 'MELO3C026914.2' => 'cme', 'Migut.D02260' => 'egut', 'Migut.J00498' => 'egut', 'Migut.J00657' => 'egut', 'Migut.J00659' => 'egut', 'Migut.J00660' => 'egut', 'Migut.L01699' => 'egut', 'Migut.L01702' => 'egut', 'Migut.N02572' => 'egut', 'Nitab4.5_0000063g0060' => 'nta', 'Nitab4.5_0000063g0070' => 'nta', 'Nitab4.5_0000063g0080' => 'nta', 'Nitab4.5_0000063g0100' => 'nta', 'Nitab4.5_0000106g0420' => 'nta', 'Nitab4.5_0000578g0190' => 'nta', 'Nitab4.5_0000814g0030' => 'nta', 'Nitab4.5_0000814g0060' => 'nta', 'Nitab4.5_0000814g0070' => 'nta', 'Nitab4.5_0002044g0010' => 'nta', 'Nitab4.5_0002186g0060' => 'nta', 'Nitab4.5_0002632g0050' => 'nta', 'Nitab4.5_0010279g0030' => 'nta', 'Nitab4.5_0014813g0010' => 'nta', 'Nn2g11581' => 'nnu', 'Nn2g11584' => 'nnu', 'Nn2g11587' => 'nnu', 'Nn2g11588' => 'nnu', 'Nn2g11589' => 'nnu', 'Nn2g11592' => 'nnu', 'Nn2g11593' => 'nnu', 'Nn2g11594' => 'nnu', 'Nn2g13776' => 'nnu', 'Nn2g13779' => 'nnu', 'Nn2g13781' => 'nnu', 'Nn5g28976' => 'nnu', 'Nn6g35149' => 'nnu', 'Oeu005021.1' => 'oeu', 'Oeu018374.1' => 'oeu', 'Oeu018482.1' => 'oeu', 'Oeu045059.1' => 'oeu', 'Peaxi162Scf00311g00081' => 'pax', 'Peaxi162Scf00311g00092' => 'pax', 'Peaxi162Scf00311g00101' => 'pax', 'Peaxi162Scf00351g00051' => 'pax', 'Peaxi162Scf00701g00012' => 'pax', 'Peaxi162Scf01139g00013' => 'pax', 'Peaxi162Scf01159g00023' => 'pax', 'PGR004G2482' => 'pgr', 'PGR094G0001' => 'pgr', 'PGR094G0003' => 'pgr', 'PGR094G0005' => 'pgr', 'PGR102G0286' => 'pgr', 'PGR102G1100' => 'pgr', 'PGSC0003DMG400003884' => 'stu', 'PGSC0003DMG400003885' => 'stu', 'PGSC0003DMG400007162' => 'stu', 'PGSC0003DMG400008070' => 'stu', 'PGSC0003DMG400010473' => 'stu', 'PGSC0003DMG400028186' => 'stu', 'PGSC0003DMG400028187' => 'stu', 'PGSC0003DMG400028188' => 'stu', 'PGSC0003DMG400028189' => 'stu', 'PGSC0003DMG400028299' => 'stu', 'PGSC0003DMG400046444' => 'stu', 'Phvul.001G178900' => 'pvu', 'Phvul.001G179000' => 'pvu', 'Phvul.005G131801' => 'pvu', 'Phvul.007G219300' => 'pvu', 'Phvul.007G219400' => 'pvu', 'Phvul.007G219500' => 'pvu', 'Phvul.007G219600' => 'pvu', 'Phvul.007G219700' => 'pvu', 'Phvul.011G083900' => 'pvu', 'Potri.006G125100' => 'ptr', 'Potri.010G226400' => 'ptr', 'Potri.016G092400' => 'ptr', 'Prupe.6G108300' => 'ppe', 'Prupe.6G108400' => 'ppe', 'Prupe.6G108500' => 'ppe', 'Prupe.6G232300' => 'ppe', 'Psat0s2933g0120' => 'psa', 'Psat0s3241g0120' => 'psa', 'Psat3g042440' => 'psa', 'Psat6g072880' => 'psa', 'Psat6g074240' => 'psa', 'PSO063G5329' => 'pso', 'PSO339G0220' => 'pso', 'PSO339G1978' => 'pso', 'PSO339G2143' => 'pso', 'PSO339G2379' => 'pso', 'PSO339G3689' => 'pso', 'PSO339G4323' => 'pso', 'PSO407G0342' => 'pso', 'PSO801G0027' => 'pso', 'PSO801G0055' => 'pso', 'PSO801G0121' => 'pso', 'PSO801G0647' => 'pso', 'QL01p015848' => 'qlo', 'QL07p043574' => 'qlo', 'RcHm_v2.0_Chr3g0470221' => 'rch', 'RcHm_v2.0_Chr3g0470231' => 'rch', 'RcHm_v2.0_Chr5g0057771' => 'rch', 'RcHm_v2.0_Chr5g0057781' => 'rch', 'Rhsim01G0212200' => 'rsi', 'Rhsim04G0144300' => 'rsi', 'Sabra06G0098800' => 'sbr', 'Sabra16G0098000' => 'sbr', 'SalBow3G0595' => 'sbo', 'SalBow3G3155' => 'sbo', 'SalBow5G3930' => 'sbo', 'SalBow5G4019' => 'sbo', 'Sc02g0001620' => 'sci', 'Sc02g0001630' => 'sci', 'Sc05g0008420' => 'sci', 'Sed0002400' => 'sed', 'Sed0011485' => 'sed', 'Sed0013058' => 'sed', 'SGA_v2.0_scaffold127G34044' => 'sas', 'SGA_v2.0_scaffold40G15518' => 'sas', 'SGA_v2.0_scaffold75G24846' => 'sas', 'Solyc06g074950.1' => 'sly', 'Solyc09g008170.3' => 'sly', 'Solyc09g008175.1' => 'sly', 'Solyc10g084010.1' => 'sly', 'Solyc10g084020.1' => 'sly', 'Solyc10g150147.1' => 'sly', 'Solyc10g150148.1' => 'sly', 'Solyc11g069093.1' => 'sly', 'Sopen06g031350' => 'spe', 'Sopen09g002970' => 'spe', 'Sopen09g002980' => 'spe', 'Sopen10g033460' => 'spe', 'Sopen10g033480' => 'spe', 'Sopen11g027820' => 'spe', 'Sp3g08210' => 'spa', 'Sp4g10880' => 'spa', 'TAR369G0306' => 'tar', 'TAR623G1087' => 'tar', 'TAR633G0735' => 'tar', 'TAR636G1002' => 'tar', 'THA.LOC104816348' => 'tha', 'THA.LOC104824506' => 'tha', 'THA.LOC104826382' => 'tha', 'THA.LOC104827408' => 'tha', 'Thecc.05G065400' => 'tca', 'Thecc.05G065800' => 'tca', 'Thecc.05G065900' => 'tca', 'Thecc.05G066000' => 'tca', 'Thecc.05G066100' => 'tca', 'Thecc.05G066200' => 'tca', 'Thecc.05G066300' => 'tca', 'Thecc.05G066400' => 'tca', 'Thecc.05G066500' => 'tca', 'Thecc.09G348200' => 'tca', 'Thecc.09G348300' => 'tca', 'Thecc.10G121000' => 'tca', 'Thhalv10017524m.g' => 'esa', 'TPR.G11263' => 'tpr', 'TPR.G11265' => 'tpr', 'TPR.G11278' => 'tpr', 'TPR.G11280' => 'tpr', 'TPR.G11281' => 'tpr', 'TPR.G11527' => 'tpr', 'TPR.G6120' => 'tpr', 'TPR.G9366' => 'tpr', 'TPR.G9368' => 'tpr', 'TWI31G1140' => 'twi', 'TWI53G1569' => 'twi', 'TWI79G1515' => 'twi', 'VMungo0720G1097' => 'vmu', 'VMungo0720G1135' => 'vmu', 'VMungo0720G1189' => 'vmu', 'VMungo1080G0562' => 'vmu', 'VMungo1127G0152' => 'vmu', 'VMungo1383G0801' => 'vmu', 'VMungo1383G3396' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001520' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001520' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001520' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001520' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '417', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p26410' => 'bna', 'A05p39180' => 'bna', 'A07p18620' => 'bna', 'Aa31LG5G8060' => 'aar', 'Actinidia03703' => 'ach', 'Ah.14g088460' => 'amhyb', 'AL3G21100' => 'aly', 'AL4G22080' => 'aly', 'Aqoxy1G01162' => 'aox', 'Aqoxy2G01777' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0GB7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQ3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1Y5X8' => 'arhy', 'AT2G28085' => 'ath', 'AT3G09870' => 'ath', 'ATR1136G022' => 'atr', 'Atru.chr3.3549' => 'acertr', 'Atru.chr3.3550' => 'acertr', 'Atru.chr8.1810' => 'acertr', 'Atru.chr8.1811' => 'acertr', 'Atru.chr8.1814' => 'acertr', 'Atru.chr8.1815' => 'acertr', 'Atru.chr8.1816' => 'acertr', 'AUR62012584' => 'cqu', 'AUR62014617' => 'cqu', 'AUR62040347' => 'cqu', 'AUR62042497' => 'cqu', 'BcaB01g03089' => 'bca', 'BcaB02g10136' => 'bca', 'BcaC01g04957' => 'bca', 'BcaC02g10942' => 'bca', 'BcaC05g29498' => 'bca', 'BcaC05g29709' => 'bca', 'BolC3t15514H' => 'bol', 'BolC4t23846H' => 'bol', 'BolC5t34477H' => 'bol', 'BraA03t11856Z' => 'bra', 'BraA05t22707Z' => 'bra', 'BraA07t29575Z' => 'bra', 'C03p31710' => 'bna', 'C04p23440' => 'bna', 'C05p58230' => 'bna', 'CAN.G1169.15' => 'can', 'CAN.G1169.18' => 'can', 'CAN.G1169.20' => 'can', 'CAN.G1169.21' => 'can', 'CAN.G1169.22' => 'can', 'CAN.G1755.6' => 'can', 'CAN.G488.3' => 'can', 'CAN.G488.4' => 'can', 'CAN.G488.5' => 'can', 'CAN.G488.6' => 'can', 'CAN.G546.8' => 'can', 'CAN.G631.64' => 'can', 'CAN.G631.66' => 'can', 'CAN.G631.67' => 'can', 'CAN.G900.35' => 'can', 'CAN.G900.36' => 'can', 'CAN.G900.37' => 'can', 'CANSAT54G2630' => 'cansat', 'CANSAT80G0144' => 'cansat', 'CANSAT80G1990' => 'cansat', 'CARHR084380' => 'chi', 'CARHR120820' => 'chi', 'Carub.0003s0896' => 'cru', 'Carub.0003s0918' => 'cru', 'Carub.0004s0885' => 'cru', 'Ca_01387_v3' => 'car', 'Ca_08859_v3' => 'car', 'Ca_11496_v3' => 'car', 'Cc01_g10550' => 'ccan', 'CDE02G3591' => 'cde', 'CDE02G3783' => 'cde', 'CDE09G0175' => 'cde', 'CDE09G0333' => 'cde', 'Cfa017608' => 'cfa', 'Cfa017609' => 'cfa', 'Cfa017610' => 'cfa', 'Cfa017611' => 'cfa', 'Cfa017613' => 'cfa', 'Ciclev10013118m.g' => 'ccl', 'Ciclev10013167m.g' => 'ccl', 'Ciclev10013305m.g' => 'ccl', 'Ciclev10013517m.g' => 'ccl', 'Ciclev10013732m.g' => 'ccl', 'Ciclev10030059m.g' => 'ccl', 'Ciclev10030078m.g' => 'ccl', 'CiPaw.09G172600' => 'cil', 'CiPaw.13G118700' => 'cil', 'ClCG02G021410' => 'cla', 'ClCG03G002720' => 'cla', 'ClCG04G009290' => 'cla', 'COL.COLO4_26964' => 'col', 'COL.COLO4_26965' => 'col', 'COL.COLO4_26970' => 'col', 'COL.COLO4_26971' => 'col', 'COL.COLO4_34700' => 'col', 'Cpa.g.sc54.76' => 'cpa', 'Cpa.g.sc54.77' => 'cpa', 'Cpa.g.sc54.78' => 'cpa', 'CsaV3_1G013410' => 'csa', 'CsaV3_6G014200' => 'csa', 'CsaV3_6G039880' => 'csa', 'CSS0011505' => 'camsi', 'CSS0032131' => 'camsi', 'CSS0036444' => 'camsi', 'CSS0037855' => 'camsi', 'CSS0042595' => 'camsi', 'CSS0043296' => 'camsi', 'CSS0047069' => 'camsi', 'DCAR_006107' => 'dca', 'DCAR_014994' => 'dca', 'DCAR_020818' => 'dca', 'Dinv34703' => 'din', 'Dinv37315' => 'din', 'Duzib093G1730' => 'dzi', 'Duzib168G1009' => 'dzi', 'Duzib170G1023' => 'dzi', 'ECA233G1003' => 'eca', 'ECA233G1315' => 'eca', 'ECA248G3335' => 'eca', 'EL10Ac7g16626' => 'bvu', 'EL10As6g23706' => 'bvu', 'Eucgr.A01687' => 'egr', 'Eucgr.L01690' => 'egr', 'FAN02G2529' => 'fan', 'FAN05G2097' => 'fan', 'FAN05G3206' => 'fan', 'FAN14G1299' => 'fan', 'FAN14G1618' => 'fan', 'FAN16G0986' => 'fan', 'FAN16G3511' => 'fan', 'FAN21G3490' => 'fan', 'FvH4_3g31150' => 'fve', 'FvH4_6g16370' => 'fve', 'FvH4_6g16380' => 'fve', 'Glyma.03G183000' => 'gma', 'Glyma.03G183100' => 'gma', 'Glyma.03G183200' => 'gma', 'Glyma.10G055600' => 'gma', 'Glyma.10G055800' => 'gma', 'Glyma.10G055900' => 'gma', 'Glyma.10G056000' => 'gma', 'Glyma.10G056200' => 'gma', 'Glyma.10G056300' => 'gma', 'Glyma.10G056400' => 'gma', 'Glyma.10G056500' => 'gma', 'Glyma.10G056600' => 'gma', 'Glyma.11G194800' => 'gma', 'Glyma.12G079300' => 'gma', 'Glyma.12G177400' => 'gma', 'Glyma.13G142700' => 'gma', 'Glyma.13G142800' => 'gma', 'Glyma.13G142900' => 'gma', 'Glyma.13G143000' => 'gma', 'Glyma.13G143100' => 'gma', 'Glyma.13G143200' => 'gma', 'Glyma.13G323300' => 'gma', 'Glyma.19G183700' => 'gma', 'Glyma.19G183800' => 'gma', 'Glyma.19G183900' => 'gma', 'Gohir.A09G146800' => 'ghi', 'Gohir.A09G146900' => 'ghi', 'Gohir.A13G232400' => 'ghi', 'Gohir.D09G142400' => 'ghi', 'Gohir.D09G142420' => 'ghi', 'Gohir.D09G142440' => 'ghi', 'Gohir.D09G142460' => 'ghi', 'Gohir.D09G142480' => 'ghi', 'Gohir.D09G142500' => 'ghi', 'Gohir.D09G142600' => 'ghi', 'Gohir.D13G238000' => 'ghi', 'Gorai.002G162000' => 'gra', 'Gorai.006G163400' => 'gra', 'Gorai.006G163500' => 'gra', 'Gorai.006G163600' => 'gra', 'Gorai.006G163800' => 'gra', 'Gorai.006G163900' => 'gra', 'Gorai.006G164000' => 'gra', 'Gorai.006G164100' => 'gra', 'Gorai.013G268800' => 'gra', 'GSVIVG01031507001' => 'vvi', 'GSVIVG01031508001' => 'vvi', 'HanXRQChr01g0017891' => 'han', 'HanXRQChr01g0017911' => 'han', 'HanXRQChr01g0025331' => 'han', 'HanXRQChr01g0027661' => 'han', 'HanXRQChr08g0215431' => 'han', 'HanXRQChr11g0346191' => 'han', 'HanXRQChr11g0346201' => 'han', 'HanXRQChr11g0350371' => 'han', 'HanXRQChr13g0396601' => 'han', 'Haze_20545' => 'cav', 'Haze_20548' => 'cav', 'Haze_20549' => 'cav', 'Hma1.2p1_0205F.1_g087070' => 'hma', 'Hma1.2p1_0344F.1_g131070' => 'hma', 'Lalb_Chr01g0018711' => 'lal', 'Lalb_Chr20g0112611' => 'lal', 'Lalb_Chr24g0394831' => 'lal', 'Lalb_Chr25g0288991' => 'lal', 'Lj1C207T2' => 'lonja', 'Lj1C207T3' => 'lonja', 'Lj1g0024124' => 'lja', 'Lj3g0008571' => 'lja', 'Lj3g0019702' => 'lja', 'Lsat_1_v5_gn_1_52081' => 'lsa', 'Lsat_1_v5_gn_1_63001' => 'lsa', 'Lsat_1_v5_gn_6_43700' => 'lsa', 'Lsat_1_v5_gn_8_28901' => 'lsa', 'Lsat_1_v5_gn_8_28921' => 'lsa', 'Manes.08G010100' => 'mes', 'Manes.08G010200' => 'mes', 'Manes.08G010202' => 'mes', 'Manes.08G010300' => 'mes', 'Manes.09G066500' => 'mes', 'Manes.11G150600' => 'mes', 'Manes.11G150700' => 'mes', 'MBI18_g04979_MAGBIO' => 'mbi', 'MBI18_g04981_MAGBIO' => 'mbi', 'MBI18_g04982_MAGBIO' => 'mbi', 'MBI18_g10198_MAGBIO' => 'mbi', 'MBI18_g38339_MAGBIO' => 'mbi', 'MD00G1033700' => 'mdo', 'MD04G1093700' => 'mdo', 'MD11G1145300' => 'mdo', 'MD12G1113400' => 'mdo', 'Medtr1g063260' => 'mtr', 'Medtr1g063280' => 'mtr', 'Medtr1g063290' => 'mtr', 'Medtr1g063300' => 'mtr', 'Medtr1g063310' => 'mtr', 'Medtr1g063330' => 'mtr', 'Medtr1g063340' => 'mtr', 'Medtr2g095430' => 'mtr', 'Medtr4g057800' => 'mtr', 'Medtr4g057810' => 'mtr', 'Medtr7g101890' => 'mtr', 'Medtr7g101920' => 'mtr', 'MELO3C004966.2' => 'cme', 'MELO3C024464.2' => 'cme', 'MELO3C026914.2' => 'cme', 'Migut.D02260' => 'egut', 'Migut.J00498' => 'egut', 'Migut.J00657' => 'egut', 'Migut.J00659' => 'egut', 'Migut.J00660' => 'egut', 'Migut.L01699' => 'egut', 'Migut.L01702' => 'egut', 'Migut.N02572' => 'egut', 'Nitab4.5_0000063g0060' => 'nta', 'Nitab4.5_0000063g0070' => 'nta', 'Nitab4.5_0000063g0080' => 'nta', 'Nitab4.5_0000063g0100' => 'nta', 'Nitab4.5_0000106g0420' => 'nta', 'Nitab4.5_0000578g0190' => 'nta', 'Nitab4.5_0000814g0030' => 'nta', 'Nitab4.5_0000814g0060' => 'nta', 'Nitab4.5_0000814g0070' => 'nta', 'Nitab4.5_0002044g0010' => 'nta', 'Nitab4.5_0002186g0060' => 'nta', 'Nitab4.5_0002632g0050' => 'nta', 'Nitab4.5_0010279g0030' => 'nta', 'Nitab4.5_0014813g0010' => 'nta', 'Nn2g11581' => 'nnu', 'Nn2g11584' => 'nnu', 'Nn2g11587' => 'nnu', 'Nn2g11588' => 'nnu', 'Nn2g11589' => 'nnu', 'Nn2g11592' => 'nnu', 'Nn2g11593' => 'nnu', 'Nn2g11594' => 'nnu', 'Nn2g13776' => 'nnu', 'Nn2g13779' => 'nnu', 'Nn2g13781' => 'nnu', 'Nn5g28976' => 'nnu', 'Nn6g35149' => 'nnu', 'Oeu005021.1' => 'oeu', 'Oeu018374.1' => 'oeu', 'Oeu018482.1' => 'oeu', 'Oeu045059.1' => 'oeu', 'Peaxi162Scf00311g00081' => 'pax', 'Peaxi162Scf00311g00092' => 'pax', 'Peaxi162Scf00311g00101' => 'pax', 'Peaxi162Scf00351g00051' => 'pax', 'Peaxi162Scf00701g00012' => 'pax', 'Peaxi162Scf01139g00013' => 'pax', 'Peaxi162Scf01159g00023' => 'pax', 'PGR004G2482' => 'pgr', 'PGR094G0001' => 'pgr', 'PGR094G0003' => 'pgr', 'PGR094G0005' => 'pgr', 'PGR102G0286' => 'pgr', 'PGR102G1100' => 'pgr', 'PGSC0003DMG400003884' => 'stu', 'PGSC0003DMG400003885' => 'stu', 'PGSC0003DMG400007162' => 'stu', 'PGSC0003DMG400008070' => 'stu', 'PGSC0003DMG400010473' => 'stu', 'PGSC0003DMG400028186' => 'stu', 'PGSC0003DMG400028187' => 'stu', 'PGSC0003DMG400028188' => 'stu', 'PGSC0003DMG400028189' => 'stu', 'PGSC0003DMG400028299' => 'stu', 'PGSC0003DMG400046444' => 'stu', 'Phvul.001G178900' => 'pvu', 'Phvul.001G179000' => 'pvu', 'Phvul.005G131801' => 'pvu', 'Phvul.007G219300' => 'pvu', 'Phvul.007G219400' => 'pvu', 'Phvul.007G219500' => 'pvu', 'Phvul.007G219600' => 'pvu', 'Phvul.007G219700' => 'pvu', 'Phvul.011G083900' => 'pvu', 'Potri.006G125100' => 'ptr', 'Potri.010G226400' => 'ptr', 'Potri.016G092400' => 'ptr', 'Prupe.6G108300' => 'ppe', 'Prupe.6G108400' => 'ppe', 'Prupe.6G108500' => 'ppe', 'Prupe.6G232300' => 'ppe', 'Psat0s2933g0120' => 'psa', 'Psat0s3241g0120' => 'psa', 'Psat3g042440' => 'psa', 'Psat6g072880' => 'psa', 'Psat6g074240' => 'psa', 'PSO063G5329' => 'pso', 'PSO339G0220' => 'pso', 'PSO339G1978' => 'pso', 'PSO339G2143' => 'pso', 'PSO339G2379' => 'pso', 'PSO339G3689' => 'pso', 'PSO339G4323' => 'pso', 'PSO407G0342' => 'pso', 'PSO801G0027' => 'pso', 'PSO801G0055' => 'pso', 'PSO801G0121' => 'pso', 'PSO801G0647' => 'pso', 'QL01p015848' => 'qlo', 'QL07p043574' => 'qlo', 'RcHm_v2.0_Chr3g0470221' => 'rch', 'RcHm_v2.0_Chr3g0470231' => 'rch', 'RcHm_v2.0_Chr5g0057771' => 'rch', 'RcHm_v2.0_Chr5g0057781' => 'rch', 'Rhsim01G0212200' => 'rsi', 'Rhsim04G0144300' => 'rsi', 'Sabra06G0098800' => 'sbr', 'Sabra16G0098000' => 'sbr', 'SalBow3G0595' => 'sbo', 'SalBow3G3155' => 'sbo', 'SalBow5G3930' => 'sbo', 'SalBow5G4019' => 'sbo', 'Sc02g0001620' => 'sci', 'Sc02g0001630' => 'sci', 'Sc05g0008420' => 'sci', 'Sed0002400' => 'sed', 'Sed0011485' => 'sed', 'Sed0013058' => 'sed', 'SGA_v2.0_scaffold127G34044' => 'sas', 'SGA_v2.0_scaffold40G15518' => 'sas', 'SGA_v2.0_scaffold75G24846' => 'sas', 'Solyc06g074950.1' => 'sly', 'Solyc09g008170.3' => 'sly', 'Solyc09g008175.1' => 'sly', 'Solyc10g084010.1' => 'sly', 'Solyc10g084020.1' => 'sly', 'Solyc10g150147.1' => 'sly', 'Solyc10g150148.1' => 'sly', 'Solyc11g069093.1' => 'sly', 'Sopen06g031350' => 'spe', 'Sopen09g002970' => 'spe', 'Sopen09g002980' => 'spe', 'Sopen10g033460' => 'spe', 'Sopen10g033480' => 'spe', 'Sopen11g027820' => 'spe', 'Sp3g08210' => 'spa', 'Sp4g10880' => 'spa', 'TAR369G0306' => 'tar', 'TAR623G1087' => 'tar', 'TAR633G0735' => 'tar', 'TAR636G1002' => 'tar', 'THA.LOC104816348' => 'tha', 'THA.LOC104824506' => 'tha', 'THA.LOC104826382' => 'tha', 'THA.LOC104827408' => 'tha', 'Thecc.05G065400' => 'tca', 'Thecc.05G065800' => 'tca', 'Thecc.05G065900' => 'tca', 'Thecc.05G066000' => 'tca', 'Thecc.05G066100' => 'tca', 'Thecc.05G066200' => 'tca', 'Thecc.05G066300' => 'tca', 'Thecc.05G066400' => 'tca', 'Thecc.05G066500' => 'tca', 'Thecc.09G348200' => 'tca', 'Thecc.09G348300' => 'tca', 'Thecc.10G121000' => 'tca', 'Thhalv10017524m.g' => 'esa', 'TPR.G11263' => 'tpr', 'TPR.G11265' => 'tpr', 'TPR.G11278' => 'tpr', 'TPR.G11280' => 'tpr', 'TPR.G11281' => 'tpr', 'TPR.G11527' => 'tpr', 'TPR.G6120' => 'tpr', 'TPR.G9366' => 'tpr', 'TPR.G9368' => 'tpr', 'TWI31G1140' => 'twi', 'TWI53G1569' => 'twi', 'TWI79G1515' => 'twi', 'VMungo0720G1097' => 'vmu', 'VMungo0720G1135' => 'vmu', 'VMungo0720G1189' => 'vmu', 'VMungo1080G0562' => 'vmu', 'VMungo1127G0152' => 'vmu', 'VMungo1383G0801' => 'vmu', 'VMungo1383G3396' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001520', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001520' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '417', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001520' ) ), 'genes' => array( 'A03p26410' => 'bna', 'A05p39180' => 'bna', 'A07p18620' => 'bna', 'Aa31LG5G8060' => 'aar', 'Actinidia03703' => 'ach', 'Ah.14g088460' => 'amhyb', 'AL3G21100' => 'aly', 'AL4G22080' => 'aly', 'Aqoxy1G01162' => 'aox', 'Aqoxy2G01777' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0GB7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQ3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1Y5X8' => 'arhy', 'AT2G28085' => 'ath', 'AT3G09870' => 'ath', 'ATR1136G022' => 'atr', 'Atru.chr3.3549' => 'acertr', 'Atru.chr3.3550' => 'acertr', 'Atru.chr8.1810' => 'acertr', 'Atru.chr8.1811' => 'acertr', 'Atru.chr8.1814' => 'acertr', 'Atru.chr8.1815' => 'acertr', 'Atru.chr8.1816' => 'acertr', 'AUR62012584' => 'cqu', 'AUR62014617' => 'cqu', 'AUR62040347' => 'cqu', 'AUR62042497' => 'cqu', 'BcaB01g03089' => 'bca', 'BcaB02g10136' => 'bca', 'BcaC01g04957' => 'bca', 'BcaC02g10942' => 'bca', 'BcaC05g29498' => 'bca', 'BcaC05g29709' => 'bca', 'BolC3t15514H' => 'bol', 'BolC4t23846H' => 'bol', 'BolC5t34477H' => 'bol', 'BraA03t11856Z' => 'bra', 'BraA05t22707Z' => 'bra', 'BraA07t29575Z' => 'bra', 'C03p31710' => 'bna', 'C04p23440' => 'bna', 'C05p58230' => 'bna', 'CAN.G1169.15' => 'can', 'CAN.G1169.18' => 'can', 'CAN.G1169.20' => 'can', 'CAN.G1169.21' => 'can', 'CAN.G1169.22' => 'can', 'CAN.G1755.6' => 'can', 'CAN.G488.3' => 'can', 'CAN.G488.4' => 'can', 'CAN.G488.5' => 'can', 'CAN.G488.6' => 'can', 'CAN.G546.8' => 'can', 'CAN.G631.64' => 'can', 'CAN.G631.66' => 'can', 'CAN.G631.67' => 'can', 'CAN.G900.35' => 'can', 'CAN.G900.36' => 'can', 'CAN.G900.37' => 'can', 'CANSAT54G2630' => 'cansat', 'CANSAT80G0144' => 'cansat', 'CANSAT80G1990' => 'cansat', 'CARHR084380' => 'chi', 'CARHR120820' => 'chi', 'Carub.0003s0896' => 'cru', 'Carub.0003s0918' => 'cru', 'Carub.0004s0885' => 'cru', 'Ca_01387_v3' => 'car', 'Ca_08859_v3' => 'car', 'Ca_11496_v3' => 'car', 'Cc01_g10550' => 'ccan', 'CDE02G3591' => 'cde', 'CDE02G3783' => 'cde', 'CDE09G0175' => 'cde', 'CDE09G0333' => 'cde', 'Cfa017608' => 'cfa', 'Cfa017609' => 'cfa', 'Cfa017610' => 'cfa', 'Cfa017611' => 'cfa', 'Cfa017613' => 'cfa', 'Ciclev10013118m.g' => 'ccl', 'Ciclev10013167m.g' => 'ccl', 'Ciclev10013305m.g' => 'ccl', 'Ciclev10013517m.g' => 'ccl', 'Ciclev10013732m.g' => 'ccl', 'Ciclev10030059m.g' => 'ccl', 'Ciclev10030078m.g' => 'ccl', 'CiPaw.09G172600' => 'cil', 'CiPaw.13G118700' => 'cil', 'ClCG02G021410' => 'cla', 'ClCG03G002720' => 'cla', 'ClCG04G009290' => 'cla', 'COL.COLO4_26964' => 'col', 'COL.COLO4_26965' => 'col', 'COL.COLO4_26970' => 'col', 'COL.COLO4_26971' => 'col', 'COL.COLO4_34700' => 'col', 'Cpa.g.sc54.76' => 'cpa', 'Cpa.g.sc54.77' => 'cpa', 'Cpa.g.sc54.78' => 'cpa', 'CsaV3_1G013410' => 'csa', 'CsaV3_6G014200' => 'csa', 'CsaV3_6G039880' => 'csa', 'CSS0011505' => 'camsi', 'CSS0032131' => 'camsi', 'CSS0036444' => 'camsi', 'CSS0037855' => 'camsi', 'CSS0042595' => 'camsi', 'CSS0043296' => 'camsi', 'CSS0047069' => 'camsi', 'DCAR_006107' => 'dca', 'DCAR_014994' => 'dca', 'DCAR_020818' => 'dca', 'Dinv34703' => 'din', 'Dinv37315' => 'din', 'Duzib093G1730' => 'dzi', 'Duzib168G1009' => 'dzi', 'Duzib170G1023' => 'dzi', 'ECA233G1003' => 'eca', 'ECA233G1315' => 'eca', 'ECA248G3335' => 'eca', 'EL10Ac7g16626' => 'bvu', 'EL10As6g23706' => 'bvu', 'Eucgr.A01687' => 'egr', 'Eucgr.L01690' => 'egr', 'FAN02G2529' => 'fan', 'FAN05G2097' => 'fan', 'FAN05G3206' => 'fan', 'FAN14G1299' => 'fan', 'FAN14G1618' => 'fan', 'FAN16G0986' => 'fan', 'FAN16G3511' => 'fan', 'FAN21G3490' => 'fan', 'FvH4_3g31150' => 'fve', 'FvH4_6g16370' => 'fve', 'FvH4_6g16380' => 'fve', 'Glyma.03G183000' => 'gma', 'Glyma.03G183100' => 'gma', 'Glyma.03G183200' => 'gma', 'Glyma.10G055600' => 'gma', 'Glyma.10G055800' => 'gma', 'Glyma.10G055900' => 'gma', 'Glyma.10G056000' => 'gma', 'Glyma.10G056200' => 'gma', 'Glyma.10G056300' => 'gma', 'Glyma.10G056400' => 'gma', 'Glyma.10G056500' => 'gma', 'Glyma.10G056600' => 'gma', 'Glyma.11G194800' => 'gma', 'Glyma.12G079300' => 'gma', 'Glyma.12G177400' => 'gma', 'Glyma.13G142700' => 'gma', 'Glyma.13G142800' => 'gma', 'Glyma.13G142900' => 'gma', 'Glyma.13G143000' => 'gma', 'Glyma.13G143100' => 'gma', 'Glyma.13G143200' => 'gma', 'Glyma.13G323300' => 'gma', 'Glyma.19G183700' => 'gma', 'Glyma.19G183800' => 'gma', 'Glyma.19G183900' => 'gma', 'Gohir.A09G146800' => 'ghi', 'Gohir.A09G146900' => 'ghi', 'Gohir.A13G232400' => 'ghi', 'Gohir.D09G142400' => 'ghi', 'Gohir.D09G142420' => 'ghi', 'Gohir.D09G142440' => 'ghi', 'Gohir.D09G142460' => 'ghi', 'Gohir.D09G142480' => 'ghi', 'Gohir.D09G142500' => 'ghi', 'Gohir.D09G142600' => 'ghi', 'Gohir.D13G238000' => 'ghi', 'Gorai.002G162000' => 'gra', 'Gorai.006G163400' => 'gra', 'Gorai.006G163500' => 'gra', 'Gorai.006G163600' => 'gra', 'Gorai.006G163800' => 'gra', 'Gorai.006G163900' => 'gra', 'Gorai.006G164000' => 'gra', 'Gorai.006G164100' => 'gra', 'Gorai.013G268800' => 'gra', 'GSVIVG01031507001' => 'vvi', 'GSVIVG01031508001' => 'vvi', 'HanXRQChr01g0017891' => 'han', 'HanXRQChr01g0017911' => 'han', 'HanXRQChr01g0025331' => 'han', 'HanXRQChr01g0027661' => 'han', 'HanXRQChr08g0215431' => 'han', 'HanXRQChr11g0346191' => 'han', 'HanXRQChr11g0346201' => 'han', 'HanXRQChr11g0350371' => 'han', 'HanXRQChr13g0396601' => 'han', 'Haze_20545' => 'cav', 'Haze_20548' => 'cav', 'Haze_20549' => 'cav', 'Hma1.2p1_0205F.1_g087070' => 'hma', 'Hma1.2p1_0344F.1_g131070' => 'hma', 'Lalb_Chr01g0018711' => 'lal', 'Lalb_Chr20g0112611' => 'lal', 'Lalb_Chr24g0394831' => 'lal', 'Lalb_Chr25g0288991' => 'lal', 'Lj1C207T2' => 'lonja', 'Lj1C207T3' => 'lonja', 'Lj1g0024124' => 'lja', 'Lj3g0008571' => 'lja', 'Lj3g0019702' => 'lja', 'Lsat_1_v5_gn_1_52081' => 'lsa', 'Lsat_1_v5_gn_1_63001' => 'lsa', 'Lsat_1_v5_gn_6_43700' => 'lsa', 'Lsat_1_v5_gn_8_28901' => 'lsa', 'Lsat_1_v5_gn_8_28921' => 'lsa', 'Manes.08G010100' => 'mes', 'Manes.08G010200' => 'mes', 'Manes.08G010202' => 'mes', 'Manes.08G010300' => 'mes', 'Manes.09G066500' => 'mes', 'Manes.11G150600' => 'mes', 'Manes.11G150700' => 'mes', 'MBI18_g04979_MAGBIO' => 'mbi', 'MBI18_g04981_MAGBIO' => 'mbi', 'MBI18_g04982_MAGBIO' => 'mbi', 'MBI18_g10198_MAGBIO' => 'mbi', 'MBI18_g38339_MAGBIO' => 'mbi', 'MD00G1033700' => 'mdo', 'MD04G1093700' => 'mdo', 'MD11G1145300' => 'mdo', 'MD12G1113400' => 'mdo', 'Medtr1g063260' => 'mtr', 'Medtr1g063280' => 'mtr', 'Medtr1g063290' => 'mtr', 'Medtr1g063300' => 'mtr', 'Medtr1g063310' => 'mtr', 'Medtr1g063330' => 'mtr', 'Medtr1g063340' => 'mtr', 'Medtr2g095430' => 'mtr', 'Medtr4g057800' => 'mtr', 'Medtr4g057810' => 'mtr', 'Medtr7g101890' => 'mtr', 'Medtr7g101920' => 'mtr', 'MELO3C004966.2' => 'cme', 'MELO3C024464.2' => 'cme', 'MELO3C026914.2' => 'cme', 'Migut.D02260' => 'egut', 'Migut.J00498' => 'egut', 'Migut.J00657' => 'egut', 'Migut.J00659' => 'egut', 'Migut.J00660' => 'egut', 'Migut.L01699' => 'egut', 'Migut.L01702' => 'egut', 'Migut.N02572' => 'egut', 'Nitab4.5_0000063g0060' => 'nta', 'Nitab4.5_0000063g0070' => 'nta', 'Nitab4.5_0000063g0080' => 'nta', 'Nitab4.5_0000063g0100' => 'nta', 'Nitab4.5_0000106g0420' => 'nta', 'Nitab4.5_0000578g0190' => 'nta', 'Nitab4.5_0000814g0030' => 'nta', 'Nitab4.5_0000814g0060' => 'nta', 'Nitab4.5_0000814g0070' => 'nta', 'Nitab4.5_0002044g0010' => 'nta', 'Nitab4.5_0002186g0060' => 'nta', 'Nitab4.5_0002632g0050' => 'nta', 'Nitab4.5_0010279g0030' => 'nta', 'Nitab4.5_0014813g0010' => 'nta', 'Nn2g11581' => 'nnu', 'Nn2g11584' => 'nnu', 'Nn2g11587' => 'nnu', 'Nn2g11588' => 'nnu', 'Nn2g11589' => 'nnu', 'Nn2g11592' => 'nnu', 'Nn2g11593' => 'nnu', 'Nn2g11594' => 'nnu', 'Nn2g13776' => 'nnu', 'Nn2g13779' => 'nnu', 'Nn2g13781' => 'nnu', 'Nn5g28976' => 'nnu', 'Nn6g35149' => 'nnu', 'Oeu005021.1' => 'oeu', 'Oeu018374.1' => 'oeu', 'Oeu018482.1' => 'oeu', 'Oeu045059.1' => 'oeu', 'Peaxi162Scf00311g00081' => 'pax', 'Peaxi162Scf00311g00092' => 'pax', 'Peaxi162Scf00311g00101' => 'pax', 'Peaxi162Scf00351g00051' => 'pax', 'Peaxi162Scf00701g00012' => 'pax', 'Peaxi162Scf01139g00013' => 'pax', 'Peaxi162Scf01159g00023' => 'pax', 'PGR004G2482' => 'pgr', 'PGR094G0001' => 'pgr', 'PGR094G0003' => 'pgr', 'PGR094G0005' => 'pgr', 'PGR102G0286' => 'pgr', 'PGR102G1100' => 'pgr', 'PGSC0003DMG400003884' => 'stu', 'PGSC0003DMG400003885' => 'stu', 'PGSC0003DMG400007162' => 'stu', 'PGSC0003DMG400008070' => 'stu', 'PGSC0003DMG400010473' => 'stu', 'PGSC0003DMG400028186' => 'stu', 'PGSC0003DMG400028187' => 'stu', 'PGSC0003DMG400028188' => 'stu', 'PGSC0003DMG400028189' => 'stu', 'PGSC0003DMG400028299' => 'stu', 'PGSC0003DMG400046444' => 'stu', 'Phvul.001G178900' => 'pvu', 'Phvul.001G179000' => 'pvu', 'Phvul.005G131801' => 'pvu', 'Phvul.007G219300' => 'pvu', 'Phvul.007G219400' => 'pvu', 'Phvul.007G219500' => 'pvu', 'Phvul.007G219600' => 'pvu', 'Phvul.007G219700' => 'pvu', 'Phvul.011G083900' => 'pvu', 'Potri.006G125100' => 'ptr', 'Potri.010G226400' => 'ptr', 'Potri.016G092400' => 'ptr', 'Prupe.6G108300' => 'ppe', 'Prupe.6G108400' => 'ppe', 'Prupe.6G108500' => 'ppe', 'Prupe.6G232300' => 'ppe', 'Psat0s2933g0120' => 'psa', 'Psat0s3241g0120' => 'psa', 'Psat3g042440' => 'psa', 'Psat6g072880' => 'psa', 'Psat6g074240' => 'psa', 'PSO063G5329' => 'pso', 'PSO339G0220' => 'pso', 'PSO339G1978' => 'pso', 'PSO339G2143' => 'pso', 'PSO339G2379' => 'pso', 'PSO339G3689' => 'pso', 'PSO339G4323' => 'pso', 'PSO407G0342' => 'pso', 'PSO801G0027' => 'pso', 'PSO801G0055' => 'pso', 'PSO801G0121' => 'pso', 'PSO801G0647' => 'pso', 'QL01p015848' => 'qlo', 'QL07p043574' => 'qlo', 'RcHm_v2.0_Chr3g0470221' => 'rch', 'RcHm_v2.0_Chr3g0470231' => 'rch', 'RcHm_v2.0_Chr5g0057771' => 'rch', 'RcHm_v2.0_Chr5g0057781' => 'rch', 'Rhsim01G0212200' => 'rsi', 'Rhsim04G0144300' => 'rsi', 'Sabra06G0098800' => 'sbr', 'Sabra16G0098000' => 'sbr', 'SalBow3G0595' => 'sbo', 'SalBow3G3155' => 'sbo', 'SalBow5G3930' => 'sbo', 'SalBow5G4019' => 'sbo', 'Sc02g0001620' => 'sci', 'Sc02g0001630' => 'sci', 'Sc05g0008420' => 'sci', 'Sed0002400' => 'sed', 'Sed0011485' => 'sed', 'Sed0013058' => 'sed', 'SGA_v2.0_scaffold127G34044' => 'sas', 'SGA_v2.0_scaffold40G15518' => 'sas', 'SGA_v2.0_scaffold75G24846' => 'sas', 'Solyc06g074950.1' => 'sly', 'Solyc09g008170.3' => 'sly', 'Solyc09g008175.1' => 'sly', 'Solyc10g084010.1' => 'sly', 'Solyc10g084020.1' => 'sly', 'Solyc10g150147.1' => 'sly', 'Solyc10g150148.1' => 'sly', 'Solyc11g069093.1' => 'sly', 'Sopen06g031350' => 'spe', 'Sopen09g002970' => 'spe', 'Sopen09g002980' => 'spe', 'Sopen10g033460' => 'spe', 'Sopen10g033480' => 'spe', 'Sopen11g027820' => 'spe', 'Sp3g08210' => 'spa', 'Sp4g10880' => 'spa', 'TAR369G0306' => 'tar', 'TAR623G1087' => 'tar', 'TAR633G0735' => 'tar', 'TAR636G1002' => 'tar', 'THA.LOC104816348' => 'tha', 'THA.LOC104824506' => 'tha', 'THA.LOC104826382' => 'tha', 'THA.LOC104827408' => 'tha', 'Thecc.05G065400' => 'tca', 'Thecc.05G065800' => 'tca', 'Thecc.05G065900' => 'tca', 'Thecc.05G066000' => 'tca', 'Thecc.05G066100' => 'tca', 'Thecc.05G066200' => 'tca', 'Thecc.05G066300' => 'tca', 'Thecc.05G066400' => 'tca', 'Thecc.05G066500' => 'tca', 'Thecc.09G348200' => 'tca', 'Thecc.09G348300' => 'tca', 'Thecc.10G121000' => 'tca', 'Thhalv10017524m.g' => 'esa', 'TPR.G11263' => 'tpr', 'TPR.G11265' => 'tpr', 'TPR.G11278' => 'tpr', 'TPR.G11280' => 'tpr', 'TPR.G11281' => 'tpr', 'TPR.G11527' => 'tpr', 'TPR.G6120' => 'tpr', 'TPR.G9366' => 'tpr', 'TPR.G9368' => 'tpr', 'TWI31G1140' => 'twi', 'TWI53G1569' => 'twi', 'TWI79G1515' => 'twi', 'VMungo0720G1097' => 'vmu', 'VMungo0720G1135' => 'vmu', 'VMungo0720G1189' => 'vmu', 'VMungo1080G0562' => 'vmu', 'VMungo1127G0152' => 'vmu', 'VMungo1383G0801' => 'vmu', 'VMungo1383G3396' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001520' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001520' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001520' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001520' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151