Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001512', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '419', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p12690' => 'bna', 'A02p42760' => 'bna', 'A04p28020' => 'bna', 'A05p09290' => 'bna', 'A06p30120' => 'bna', 'A07p21340' => 'bna', 'A09p08290' => 'bna', 'A09p46020' => 'bna', 'Aa31LG10G8160' => 'aar', 'Aa31LG10G9440' => 'aar', 'Aa31LG1G18550' => 'aar', 'Aa31LG3G7010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.478' => 'aag', 'Actinidia01948' => 'ach', 'Actinidia03791' => 'ach', 'Actinidia08883' => 'ach', 'Actinidia16514' => 'ach', 'Actinidia25412' => 'ach', 'Actinidia36819' => 'ach', 'Ah.02g117690' => 'amhyb', 'Ah.06g188570' => 'amhyb', 'Ah.11g045480' => 'amhyb', 'AL4G32690' => 'aly', 'AL5G33740' => 'aly', 'AL8G24800' => 'aly', 'AL8G40550' => 'aly', 'Aqoxy2G02638' => 'aox', 'Aqoxy3G00665' => 'aox', 'Aqoxy5G03323' => 'aox', 'Aqoxy6G00219' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38E3HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7YN7DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS8SB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMD6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD6YD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q310BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ9QMJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V82Y8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5G5FZ' => 'arhy', 'AT2G36500' => 'ath', 'AT3G52950' => 'ath', 'AT5G50530' => 'ath', 'AT5G50640' => 'ath', 'AT5G63490' => 'ath', 'ATR0561G050' => 'atr', 'ATR0584G131' => 'atr', 'Atru.chr4.1114' => 'acertr', 'Atru.chr6.1814' => 'acertr', 'AUR62000555' => 'cqu', 'AUR62006907' => 'cqu', 'AUR62029590' => 'cqu', 'AUR62034845' => 'cqu', 'BcaB01g00325' => 'bca', 'BcaB02g09349' => 'bca', 'BcaB02g09757' => 'bca', 'BcaB04g19921' => 'bca', 'BcaB05g24041' => 'bca', 'BcaB06g28949' => 'bca', 'BcaB07g29689' => 'bca', 'BcaC01g06927' => 'bca', 'BcaC02g07587' => 'bca', 'BcaC02g11769' => 'bca', 'BcaC03g14642' => 'bca', 'BcaC03g18208' => 'bca', 'BcaC04g23333' => 'bca', 'BcaC07g39658' => 'bca', 'BcaC08g44615' => 'bca', 'BolC2t08217H' => 'bol', 'BolC2t12346H' => 'bol', 'BolC3t18549H' => 'bol', 'BolC4t22807H' => 'bol', 'BolC4t28031H' => 'bol', 'BolC6t37274H' => 'bol', 'BolC8t50433H' => 'bol', 'BolC9t53849H' => 'bol', 'BraA02t06324Z' => 'bra', 'BraA02t09202Z' => 'bra', 'BraA04t18289Z' => 'bra', 'BraA05t19886Z' => 'bra', 'BraA06t25963Z' => 'bra', 'BraA07t29821Z' => 'bra', 'BraA09t36479Z' => 'bra', 'BraA09t40064Z' => 'bra', 'C02p20760' => 'bna', 'C02p62750' => 'bna', 'C03p62950' => 'bna', 'C04p11590' => 'bna', 'C04p65420' => 'bna', 'C06p20870' => 'bna', 'C08p28210' => 'bna', 'C09p09370' => 'bna', 'CAN.G1611.9' => 'can', 'CAN.G2.33' => 'can', 'CAN.G2.34' => 'can', 'CAN.G65.52' => 'can', 'CAN.G94.8' => 'can', 'CANSAT01G2139' => 'cansat', 'CANSAT80G1300' => 'cansat', 'CARHR130810' => 'chi', 'CARHR162830' => 'chi', 'CARHR257720' => 'chi', 'CARHR277340' => 'chi', 'Carub.0004s1832' => 'cru', 'Carub.0005s1943' => 'cru', 'Carub.0008s1064' => 'cru', 'Carub.0008s2419' => 'cru', 'Ca_16055_v3' => 'car', 'Ca_17003_v3' => 'car', 'Ca_17559_v3' => 'car', 'Ca_17608_v3' => 'car', 'Ca_30661_v3' => 'car', 'CBR_g40427' => 'cbr', 'Cc04_g10010' => 'ccan', 'Cc07_g19540' => 'ccan', 'CDE02G3776' => 'cde', 'CDE05G1880' => 'cde', 'CDE05G2144' => 'cde', 'CDE05G2627' => 'cde', 'Cfa002165' => 'cfa', 'Ciclev10000793m.g' => 'ccl', 'Ciclev10031167m.g' => 'ccl', 'CiPaw.03G115300' => 'cil', 'CiPaw.11G006000' => 'cil', 'CiPaw.12G044200' => 'cil', 'ClCG04G001750' => 'cla', 'ClCG06G017990' => 'cla', 'COL.COLO4_12115' => 'col', 'COL.COLO4_28145' => 'col', 'Cpa.g.c39311' => 'cpa', 'Cpa.g.sc13.98' => 'cpa', 'Cpa.g.sc37.40' => 'cpa', 'CsaV3_1G000480' => 'csa', 'CsaV3_4G030800' => 'csa', 'CSS0002692' => 'camsi', 'CSS0007571' => 'camsi', 'CSS0009668' => 'camsi', 'CSS0010143' => 'camsi', 'CSS0030126' => 'camsi', 'CSS0031225' => 'camsi', 'CSS0032112' => 'camsi', 'CSS0046540' => 'camsi', 'DCAR_007498' => 'dca', 'DCAR_019959' => 'dca', 'DCAR_021626' => 'dca', 'Dinv07261' => 'din', 'Dinv07460' => 'din', 'Dinv11185' => 'din', 'Dinv23161' => 'din', 'Duzib068G0263' => 'dzi', 'Duzib147G0677' => 'dzi', 'Duzib205G0934' => 'dzi', 'ECA232G4930' => 'eca', 'ECA233G3362' => 'eca', 'ECA246G0570' => 'eca', 'ECA247G2755' => 'eca', 'EL10Ac4g07714' => 'bvu', 'EL10Ac4g09663' => 'bvu', 'EL10Ac5g11397' => 'bvu', 'EL10Ac5g12267' => 'bvu', 'EL10Ac8g19613' => 'bvu', 'EL10Ac8g19826' => 'bvu', 'Eucgr.H05076' => 'egr', 'Eucgr.K02712' => 'egr', 'FAN04G1433' => 'fan', 'FAN08G0128' => 'fan', 'FAN13G0027' => 'fan', 'FAN18G0647' => 'fan', 'FAN19G0721' => 'fan', 'FAN23G1570' => 'fan', 'FAN26G1544' => 'fan', 'FAN28G1718' => 'fan', 'FvH4_1g25510' => 'fve', 'FvH4_5g08490' => 'fve', 'Glyma.04G196800' => 'gma', 'Glyma.04G207600' => 'gma', 'Glyma.05G195700' => 'gma', 'Glyma.05G204500' => 'gma', 'Glyma.06G158200' => 'gma', 'Glyma.06G169000' => 'gma', 'Glyma.08G003300' => 'gma', 'Glyma.08G011700' => 'gma', 'Gohir.A03G053000' => 'ghi', 'Gohir.A07G050400' => 'ghi', 'Gohir.A09G006300' => 'ghi', 'Gohir.A11G036700' => 'ghi', 'Gohir.A11G058100' => 'ghi', 'Gohir.D03G114100' => 'ghi', 'Gohir.D07G054900' => 'ghi', 'Gohir.D07G054933' => 'ghi', 'Gohir.D07G054966' => 'ghi', 'Gohir.D09G005400' => 'ghi', 'Gohir.D11G040000' => 'ghi', 'Gohir.D11G062300' => 'ghi', 'Gorai.001G058100' => 'gra', 'Gorai.003G120400' => 'gra', 'Gorai.006G007000' => 'gra', 'Gorai.007G043100' => 'gra', 'Gorai.007G067100' => 'gra', 'GSVIVG01008562001' => 'vvi', 'GSVIVG01022373001' => 'vvi', 'HanXRQChr04g0102961' => 'han', 'HanXRQChr05g0155121' => 'han', 'HanXRQChr06g0177011' => 'han', 'HanXRQChr08g0236831' => 'han', 'HanXRQChr09g0273341' => 'han', 'HanXRQChr12g0380471' => 'han', 'HanXRQChr16g0498061' => 'han', 'Haze_07154' => 'cav', 'Haze_25340' => 'cav', 'Hma1.2p1_0014F.1_g009290' => 'hma', 'Hma1.2p1_0957F.1_g241410' => 'hma', 'HPP92_004399' => 'vpl', 'HPP92_007007' => 'vpl', 'HPP92_007008' => 'vpl', 'HPP92_021564' => 'vpl', 'HPP92_021565' => 'vpl', 'HPP92_021600' => 'vpl', 'HPP92_025260' => 'vpl', 'HPP92_025274' => 'vpl', 'HPP92_027136' => 'vpl', 'HPP92_027805' => 'vpl', 'Hund02449' => 'sun', 'Hund07207' => 'sun', 'Hund07208' => 'sun', 'Hund07209' => 'sun', 'Hund10150' => 'sun', 'Hund21789' => 'sun', 'Lalb_Chr07g0183491' => 'lal', 'Lalb_Chr07g0184171' => 'lal', 'Lalb_Chr08g0237251' => 'lal', 'Lalb_Chr08g0237971' => 'lal', 'Lalb_Chr08g0237981' => 'lal', 'Lalb_Chr12g0202241' => 'lal', 'Lalb_Chr12g0202901' => 'lal', 'Lj1g0001167' => 'lja', 'Lj1g0025578' => 'lja', 'Lj2C608G4' => 'lonja', 'Lj4g0004546' => 'lja', 'Lj4g0017068' => 'lja', 'Lj5A95T76' => 'lonja', 'Lj9A480T83' => 'lonja', 'Lsat_1_v5_gn_1_33080' => 'lsa', 'Lsat_1_v5_gn_2_57801' => 'lsa', 'Lsat_1_v5_gn_4_165060' => 'lsa', 'Lsat_1_v5_gn_4_81321' => 'lsa', 'Lsat_1_v5_gn_5_11720' => 'lsa', 'Lsat_1_v5_gn_5_49701' => 'lsa', 'Lsat_1_v5_gn_5_69140' => 'lsa', 'Manes.06G120600' => 'mes', 'Manes.12G080101' => 'mes', 'Manes.14G050200' => 'mes', 'Mapoly0179s0023' => 'mpo', 'MBI11_g22678_MAGBIO' => 'mbi', 'MBI11_g41401_MAGBIO' => 'mbi', 'MBI16_g07663_MAGBIO' => 'mbi', 'MD05G1065700' => 'mdo', 'MD06G1140500' => 'mdo', 'MD08G1110100' => 'mdo', 'MD08G1219400' => 'mdo', 'MD14G1155700' => 'mdo', 'MD15G1408000' => 'mdo', 'Medtr3g097010' => 'mtr', 'Medtr3g099100' => 'mtr', 'Medtr7g114800' => 'mtr', 'Medtr8g044820' => 'mtr', 'Medtr8g094780' => 'mtr', 'Medtr8g096850' => 'mtr', 'MELO3C008947.2' => 'cme', 'MELO3C026200.2' => 'cme', 'Migut.D01272' => 'egut', 'Migut.H00837' => 'egut', 'Migut.H00846' => 'egut', 'Migut.I00538' => 'egut', 'MSTRG.23480' => 'ama', 'MSTRG.9331' => 'ama', 'Nitab4.5_0000432g0120' => 'nta', 'Nitab4.5_0000624g0120' => 'nta', 'Nitab4.5_0001311g0180' => 'nta', 'Nitab4.5_0001678g0070' => 'nta', 'Nitab4.5_0002028g0010' => 'nta', 'Nitab4.5_0003285g0050' => 'nta', 'Nitab4.5_0003948g0010' => 'nta', 'Nitab4.5_0004542g0030' => 'nta', 'Nn1g08797' => 'nnu', 'Nn3g16432' => 'nnu', 'Nn3g19431' => 'nnu', 'Nn4g24571' => 'nnu', 'Nn4g24572' => 'nnu', 'Nn5g28292' => 'nnu', 'Oeu004997.2' => 'oeu', 'Oeu029100.2' => 'oeu', 'Oeu042317.2' => 'oeu', 'Os01g0923300' => 'osa', 'Os01g0961200' => 'osa', 'Os11g0170300' => 'osa', 'Os11g0496400' => 'osa', 'Os12g0169400' => 'osa', 'Peaxi162Scf00089g00125' => 'pax', 'Peaxi162Scf00536g00516' => 'pax', 'Peaxi162Scf00763g00229' => 'pax', 'Peaxi162Scf01677g00006' => 'pax', 'PGR044G1660' => 'pgr', 'PGR083G0636' => 'pgr', 'PGR102G2822' => 'pgr', 'PGSC0003DMG400008480' => 'stu', 'PGSC0003DMG400015266' => 'stu', 'PGSC0003DMG400020525' => 'stu', 'PGSC0003DMG400034423' => 'stu', 'PGSC0003DMG402026974' => 'stu', 'Phvul.002G276200' => 'pvu', 'Phvul.002G286300' => 'pvu', 'Phvul.009G152100' => 'pvu', 'Phvul.009G165300' => 'pvu', 'Potri.005G070500' => 'ptr', 'Potri.007G098400' => 'ptr', 'Potri.012G099600' => 'ptr', 'Potri.015G098100' => 'ptr', 'Pp3c11_15160' => 'ppa', 'Pp3c1_14290' => 'ppa', 'Pp3c1_14310' => 'ppa', 'Pp3c2_26110' => 'ppa', 'Pp3c7_10070' => 'ppa', 'Prupe.1G553500' => 'ppe', 'Prupe.5G149700' => 'ppe', 'Psat5g052040' => 'psa', 'Psat5g058880' => 'psa', 'Psat7g036040' => 'psa', 'Psat7g043320' => 'psa', 'PSO017G0742' => 'pso', 'PSO017G3014' => 'pso', 'PSO478G2822' => 'pso', 'PSO478G3654' => 'pso', 'PSO528G0044' => 'pso', 'QL09p036442' => 'qlo', 'QL10p002635' => 'qlo', 'QL10p040171' => 'qlo', 'RcHm_v2.0_Chr2g0123641' => 'rch', 'RcHm_v2.0_Chr7g0189921' => 'rch', 'Rhsim08G0001800' => 'rsi', 'Rhsim08G0191300' => 'rsi', 'Rhsim12G0176100' => 'rsi', 'Sabra05G0057300' => 'sbr', 'Sabra07G0081800' => 'sbr', 'Sabra12G0072900' => 'sbr', 'Sabra15G0118700' => 'sbr', 'SalBow1G0068' => 'sbo', 'SalBow1G4612' => 'sbo', 'SalBow5G3778' => 'sbo', 'SalBow5G4742' => 'sbo', 'SalBow5G5176' => 'sbo', 'Sc04g0000540' => 'sci', 'Sc09g0002190' => 'sci', 'Sed0014432' => 'sed', 'Sed0016763' => 'sed', 'Sed0023597' => 'sed', 'SEGI_08213' => 'sgi', 'SEGI_12539' => 'sgi', 'SEGI_13889' => 'sgi', 'SEGI_34554' => 'sgi', 'SGA_v2.0_scaffold20G08971' => 'sas', 'SGA_v2.0_scaffold211G42166' => 'sas', 'SGA_v2.0_scaffold215G42347' => 'sas', 'SGA_v2.0_scaffold5G02861' => 'sas', 'SHI11435' => 'shi', 'SMO117G0006' => 'smo', 'SMO146G0075' => 'smo', 'SMO197G0110' => 'smo', 'Solyc03g019680.3' => 'sly', 'Solyc06g072050.4' => 'sly', 'Solyc12g032930.3' => 'sly', 'Solyc12g032950.3' => 'sly', 'Sopen03g029940' => 'spe', 'Sopen06g028340' => 'spe', 'Sopen12g013960' => 'spe', 'Sopen12g014050' => 'spe', 'Sp2g26570' => 'spa', 'Sp4g18810' => 'spa', 'Sp5g09380' => 'spa', 'Sp6g12710' => 'spa', 'TAR622G1057' => 'tar', 'TAR625G1285' => 'tar', 'TAR629G3085' => 'tar', 'THA.LOC104807206' => 'tha', 'THA.LOC104811582' => 'tha', 'THA.LOC104818181' => 'tha', 'THA.LOC104821523' => 'tha', 'THA.LOC104825021' => 'tha', 'Thecc.01G142100' => 'tca', 'Thecc.03G130700' => 'tca', 'Thhalv10003950m.g' => 'esa', 'Thhalv10010265m.g' => 'esa', 'Thhalv10013164m.g' => 'esa', 'Thhalv10016029m.g' => 'esa', 'Thhalv10016477m.g' => 'esa', 'TPR.G12801' => 'tpr', 'TPR.G37383' => 'tpr', 'TPR.G7877' => 'tpr', 'TWI31G0638' => 'twi', 'TWI39G1126' => 'twi', 'TWI75G1347' => 'twi', 'unitig_0.g1248' => 'ugi', 'unitig_27.g25093' => 'ugi', 'unitig_27.g25094' => 'ugi', 'unitig_46.g18653' => 'ugi', 'vmacro16728' => 'vma', 'vmacro18675' => 'vma', 'vmacro19122' => 'vma', 'VMungo0251G0294' => 'vmu', 'VMungo0251G2672' => 'vmu', 'VMungo0300G0001' => 'vmu', 'VMungo1309G0322' => 'vmu', 'VMungo1309G2575' => 'vmu', 'Zm00001eb028380' => 'zma', 'Zm00001eb091750' => 'zma', 'Zm00001eb143070' => 'zma', 'Zm00001eb169430' => 'zma', 'Zm00001eb180140' => 'zma', 'Zm00001eb200900' => 'zma', 'Zm00001eb364290' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001512', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001512' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001512', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '419', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001512' ) ), 'genes' => array( 'A02p12690' => 'bna', 'A02p42760' => 'bna', 'A04p28020' => 'bna', 'A05p09290' => 'bna', 'A06p30120' => 'bna', 'A07p21340' => 'bna', 'A09p08290' => 'bna', 'A09p46020' => 'bna', 'Aa31LG10G8160' => 'aar', 'Aa31LG10G9440' => 'aar', 'Aa31LG1G18550' => 'aar', 'Aa31LG3G7010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.478' => 'aag', 'Actinidia01948' => 'ach', 'Actinidia03791' => 'ach', 'Actinidia08883' => 'ach', 'Actinidia16514' => 'ach', 'Actinidia25412' => 'ach', 'Actinidia36819' => 'ach', 'Ah.02g117690' => 'amhyb', 'Ah.06g188570' => 'amhyb', 'Ah.11g045480' => 'amhyb', 'AL4G32690' => 'aly', 'AL5G33740' => 'aly', 'AL8G24800' => 'aly', 'AL8G40550' => 'aly', 'Aqoxy2G02638' => 'aox', 'Aqoxy3G00665' => 'aox', 'Aqoxy5G03323' => 'aox', 'Aqoxy6G00219' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38E3HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7YN7DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS8SB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMD6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD6YD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q310BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ9QMJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V82Y8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5G5FZ' => 'arhy', 'AT2G36500' => 'ath', 'AT3G52950' => 'ath', 'AT5G50530' => 'ath', 'AT5G50640' => 'ath', 'AT5G63490' => 'ath', 'ATR0561G050' => 'atr', 'ATR0584G131' => 'atr', 'Atru.chr4.1114' => 'acertr', 'Atru.chr6.1814' => 'acertr', 'AUR62000555' => 'cqu', 'AUR62006907' => 'cqu', 'AUR62029590' => 'cqu', 'AUR62034845' => 'cqu', 'BcaB01g00325' => 'bca', 'BcaB02g09349' => 'bca', 'BcaB02g09757' => 'bca', 'BcaB04g19921' => 'bca', 'BcaB05g24041' => 'bca', 'BcaB06g28949' => 'bca', 'BcaB07g29689' => 'bca', 'BcaC01g06927' => 'bca', 'BcaC02g07587' => 'bca', 'BcaC02g11769' => 'bca', 'BcaC03g14642' => 'bca', 'BcaC03g18208' => 'bca', 'BcaC04g23333' => 'bca', 'BcaC07g39658' => 'bca', 'BcaC08g44615' => 'bca', 'BolC2t08217H' => 'bol', 'BolC2t12346H' => 'bol', 'BolC3t18549H' => 'bol', 'BolC4t22807H' => 'bol', 'BolC4t28031H' => 'bol', 'BolC6t37274H' => 'bol', 'BolC8t50433H' => 'bol', 'BolC9t53849H' => 'bol', 'BraA02t06324Z' => 'bra', 'BraA02t09202Z' => 'bra', 'BraA04t18289Z' => 'bra', 'BraA05t19886Z' => 'bra', 'BraA06t25963Z' => 'bra', 'BraA07t29821Z' => 'bra', 'BraA09t36479Z' => 'bra', 'BraA09t40064Z' => 'bra', 'C02p20760' => 'bna', 'C02p62750' => 'bna', 'C03p62950' => 'bna', 'C04p11590' => 'bna', 'C04p65420' => 'bna', 'C06p20870' => 'bna', 'C08p28210' => 'bna', 'C09p09370' => 'bna', 'CAN.G1611.9' => 'can', 'CAN.G2.33' => 'can', 'CAN.G2.34' => 'can', 'CAN.G65.52' => 'can', 'CAN.G94.8' => 'can', 'CANSAT01G2139' => 'cansat', 'CANSAT80G1300' => 'cansat', 'CARHR130810' => 'chi', 'CARHR162830' => 'chi', 'CARHR257720' => 'chi', 'CARHR277340' => 'chi', 'Carub.0004s1832' => 'cru', 'Carub.0005s1943' => 'cru', 'Carub.0008s1064' => 'cru', 'Carub.0008s2419' => 'cru', 'Ca_16055_v3' => 'car', 'Ca_17003_v3' => 'car', 'Ca_17559_v3' => 'car', 'Ca_17608_v3' => 'car', 'Ca_30661_v3' => 'car', 'CBR_g40427' => 'cbr', 'Cc04_g10010' => 'ccan', 'Cc07_g19540' => 'ccan', 'CDE02G3776' => 'cde', 'CDE05G1880' => 'cde', 'CDE05G2144' => 'cde', 'CDE05G2627' => 'cde', 'Cfa002165' => 'cfa', 'Ciclev10000793m.g' => 'ccl', 'Ciclev10031167m.g' => 'ccl', 'CiPaw.03G115300' => 'cil', 'CiPaw.11G006000' => 'cil', 'CiPaw.12G044200' => 'cil', 'ClCG04G001750' => 'cla', 'ClCG06G017990' => 'cla', 'COL.COLO4_12115' => 'col', 'COL.COLO4_28145' => 'col', 'Cpa.g.c39311' => 'cpa', 'Cpa.g.sc13.98' => 'cpa', 'Cpa.g.sc37.40' => 'cpa', 'CsaV3_1G000480' => 'csa', 'CsaV3_4G030800' => 'csa', 'CSS0002692' => 'camsi', 'CSS0007571' => 'camsi', 'CSS0009668' => 'camsi', 'CSS0010143' => 'camsi', 'CSS0030126' => 'camsi', 'CSS0031225' => 'camsi', 'CSS0032112' => 'camsi', 'CSS0046540' => 'camsi', 'DCAR_007498' => 'dca', 'DCAR_019959' => 'dca', 'DCAR_021626' => 'dca', 'Dinv07261' => 'din', 'Dinv07460' => 'din', 'Dinv11185' => 'din', 'Dinv23161' => 'din', 'Duzib068G0263' => 'dzi', 'Duzib147G0677' => 'dzi', 'Duzib205G0934' => 'dzi', 'ECA232G4930' => 'eca', 'ECA233G3362' => 'eca', 'ECA246G0570' => 'eca', 'ECA247G2755' => 'eca', 'EL10Ac4g07714' => 'bvu', 'EL10Ac4g09663' => 'bvu', 'EL10Ac5g11397' => 'bvu', 'EL10Ac5g12267' => 'bvu', 'EL10Ac8g19613' => 'bvu', 'EL10Ac8g19826' => 'bvu', 'Eucgr.H05076' => 'egr', 'Eucgr.K02712' => 'egr', 'FAN04G1433' => 'fan', 'FAN08G0128' => 'fan', 'FAN13G0027' => 'fan', 'FAN18G0647' => 'fan', 'FAN19G0721' => 'fan', 'FAN23G1570' => 'fan', 'FAN26G1544' => 'fan', 'FAN28G1718' => 'fan', 'FvH4_1g25510' => 'fve', 'FvH4_5g08490' => 'fve', 'Glyma.04G196800' => 'gma', 'Glyma.04G207600' => 'gma', 'Glyma.05G195700' => 'gma', 'Glyma.05G204500' => 'gma', 'Glyma.06G158200' => 'gma', 'Glyma.06G169000' => 'gma', 'Glyma.08G003300' => 'gma', 'Glyma.08G011700' => 'gma', 'Gohir.A03G053000' => 'ghi', 'Gohir.A07G050400' => 'ghi', 'Gohir.A09G006300' => 'ghi', 'Gohir.A11G036700' => 'ghi', 'Gohir.A11G058100' => 'ghi', 'Gohir.D03G114100' => 'ghi', 'Gohir.D07G054900' => 'ghi', 'Gohir.D07G054933' => 'ghi', 'Gohir.D07G054966' => 'ghi', 'Gohir.D09G005400' => 'ghi', 'Gohir.D11G040000' => 'ghi', 'Gohir.D11G062300' => 'ghi', 'Gorai.001G058100' => 'gra', 'Gorai.003G120400' => 'gra', 'Gorai.006G007000' => 'gra', 'Gorai.007G043100' => 'gra', 'Gorai.007G067100' => 'gra', 'GSVIVG01008562001' => 'vvi', 'GSVIVG01022373001' => 'vvi', 'HanXRQChr04g0102961' => 'han', 'HanXRQChr05g0155121' => 'han', 'HanXRQChr06g0177011' => 'han', 'HanXRQChr08g0236831' => 'han', 'HanXRQChr09g0273341' => 'han', 'HanXRQChr12g0380471' => 'han', 'HanXRQChr16g0498061' => 'han', 'Haze_07154' => 'cav', 'Haze_25340' => 'cav', 'Hma1.2p1_0014F.1_g009290' => 'hma', 'Hma1.2p1_0957F.1_g241410' => 'hma', 'HPP92_004399' => 'vpl', 'HPP92_007007' => 'vpl', 'HPP92_007008' => 'vpl', 'HPP92_021564' => 'vpl', 'HPP92_021565' => 'vpl', 'HPP92_021600' => 'vpl', 'HPP92_025260' => 'vpl', 'HPP92_025274' => 'vpl', 'HPP92_027136' => 'vpl', 'HPP92_027805' => 'vpl', 'Hund02449' => 'sun', 'Hund07207' => 'sun', 'Hund07208' => 'sun', 'Hund07209' => 'sun', 'Hund10150' => 'sun', 'Hund21789' => 'sun', 'Lalb_Chr07g0183491' => 'lal', 'Lalb_Chr07g0184171' => 'lal', 'Lalb_Chr08g0237251' => 'lal', 'Lalb_Chr08g0237971' => 'lal', 'Lalb_Chr08g0237981' => 'lal', 'Lalb_Chr12g0202241' => 'lal', 'Lalb_Chr12g0202901' => 'lal', 'Lj1g0001167' => 'lja', 'Lj1g0025578' => 'lja', 'Lj2C608G4' => 'lonja', 'Lj4g0004546' => 'lja', 'Lj4g0017068' => 'lja', 'Lj5A95T76' => 'lonja', 'Lj9A480T83' => 'lonja', 'Lsat_1_v5_gn_1_33080' => 'lsa', 'Lsat_1_v5_gn_2_57801' => 'lsa', 'Lsat_1_v5_gn_4_165060' => 'lsa', 'Lsat_1_v5_gn_4_81321' => 'lsa', 'Lsat_1_v5_gn_5_11720' => 'lsa', 'Lsat_1_v5_gn_5_49701' => 'lsa', 'Lsat_1_v5_gn_5_69140' => 'lsa', 'Manes.06G120600' => 'mes', 'Manes.12G080101' => 'mes', 'Manes.14G050200' => 'mes', 'Mapoly0179s0023' => 'mpo', 'MBI11_g22678_MAGBIO' => 'mbi', 'MBI11_g41401_MAGBIO' => 'mbi', 'MBI16_g07663_MAGBIO' => 'mbi', 'MD05G1065700' => 'mdo', 'MD06G1140500' => 'mdo', 'MD08G1110100' => 'mdo', 'MD08G1219400' => 'mdo', 'MD14G1155700' => 'mdo', 'MD15G1408000' => 'mdo', 'Medtr3g097010' => 'mtr', 'Medtr3g099100' => 'mtr', 'Medtr7g114800' => 'mtr', 'Medtr8g044820' => 'mtr', 'Medtr8g094780' => 'mtr', 'Medtr8g096850' => 'mtr', 'MELO3C008947.2' => 'cme', 'MELO3C026200.2' => 'cme', 'Migut.D01272' => 'egut', 'Migut.H00837' => 'egut', 'Migut.H00846' => 'egut', 'Migut.I00538' => 'egut', 'MSTRG.23480' => 'ama', 'MSTRG.9331' => 'ama', 'Nitab4.5_0000432g0120' => 'nta', 'Nitab4.5_0000624g0120' => 'nta', 'Nitab4.5_0001311g0180' => 'nta', 'Nitab4.5_0001678g0070' => 'nta', 'Nitab4.5_0002028g0010' => 'nta', 'Nitab4.5_0003285g0050' => 'nta', 'Nitab4.5_0003948g0010' => 'nta', 'Nitab4.5_0004542g0030' => 'nta', 'Nn1g08797' => 'nnu', 'Nn3g16432' => 'nnu', 'Nn3g19431' => 'nnu', 'Nn4g24571' => 'nnu', 'Nn4g24572' => 'nnu', 'Nn5g28292' => 'nnu', 'Oeu004997.2' => 'oeu', 'Oeu029100.2' => 'oeu', 'Oeu042317.2' => 'oeu', 'Os01g0923300' => 'osa', 'Os01g0961200' => 'osa', 'Os11g0170300' => 'osa', 'Os11g0496400' => 'osa', 'Os12g0169400' => 'osa', 'Peaxi162Scf00089g00125' => 'pax', 'Peaxi162Scf00536g00516' => 'pax', 'Peaxi162Scf00763g00229' => 'pax', 'Peaxi162Scf01677g00006' => 'pax', 'PGR044G1660' => 'pgr', 'PGR083G0636' => 'pgr', 'PGR102G2822' => 'pgr', 'PGSC0003DMG400008480' => 'stu', 'PGSC0003DMG400015266' => 'stu', 'PGSC0003DMG400020525' => 'stu', 'PGSC0003DMG400034423' => 'stu', 'PGSC0003DMG402026974' => 'stu', 'Phvul.002G276200' => 'pvu', 'Phvul.002G286300' => 'pvu', 'Phvul.009G152100' => 'pvu', 'Phvul.009G165300' => 'pvu', 'Potri.005G070500' => 'ptr', 'Potri.007G098400' => 'ptr', 'Potri.012G099600' => 'ptr', 'Potri.015G098100' => 'ptr', 'Pp3c11_15160' => 'ppa', 'Pp3c1_14290' => 'ppa', 'Pp3c1_14310' => 'ppa', 'Pp3c2_26110' => 'ppa', 'Pp3c7_10070' => 'ppa', 'Prupe.1G553500' => 'ppe', 'Prupe.5G149700' => 'ppe', 'Psat5g052040' => 'psa', 'Psat5g058880' => 'psa', 'Psat7g036040' => 'psa', 'Psat7g043320' => 'psa', 'PSO017G0742' => 'pso', 'PSO017G3014' => 'pso', 'PSO478G2822' => 'pso', 'PSO478G3654' => 'pso', 'PSO528G0044' => 'pso', 'QL09p036442' => 'qlo', 'QL10p002635' => 'qlo', 'QL10p040171' => 'qlo', 'RcHm_v2.0_Chr2g0123641' => 'rch', 'RcHm_v2.0_Chr7g0189921' => 'rch', 'Rhsim08G0001800' => 'rsi', 'Rhsim08G0191300' => 'rsi', 'Rhsim12G0176100' => 'rsi', 'Sabra05G0057300' => 'sbr', 'Sabra07G0081800' => 'sbr', 'Sabra12G0072900' => 'sbr', 'Sabra15G0118700' => 'sbr', 'SalBow1G0068' => 'sbo', 'SalBow1G4612' => 'sbo', 'SalBow5G3778' => 'sbo', 'SalBow5G4742' => 'sbo', 'SalBow5G5176' => 'sbo', 'Sc04g0000540' => 'sci', 'Sc09g0002190' => 'sci', 'Sed0014432' => 'sed', 'Sed0016763' => 'sed', 'Sed0023597' => 'sed', 'SEGI_08213' => 'sgi', 'SEGI_12539' => 'sgi', 'SEGI_13889' => 'sgi', 'SEGI_34554' => 'sgi', 'SGA_v2.0_scaffold20G08971' => 'sas', 'SGA_v2.0_scaffold211G42166' => 'sas', 'SGA_v2.0_scaffold215G42347' => 'sas', 'SGA_v2.0_scaffold5G02861' => 'sas', 'SHI11435' => 'shi', 'SMO117G0006' => 'smo', 'SMO146G0075' => 'smo', 'SMO197G0110' => 'smo', 'Solyc03g019680.3' => 'sly', 'Solyc06g072050.4' => 'sly', 'Solyc12g032930.3' => 'sly', 'Solyc12g032950.3' => 'sly', 'Sopen03g029940' => 'spe', 'Sopen06g028340' => 'spe', 'Sopen12g013960' => 'spe', 'Sopen12g014050' => 'spe', 'Sp2g26570' => 'spa', 'Sp4g18810' => 'spa', 'Sp5g09380' => 'spa', 'Sp6g12710' => 'spa', 'TAR622G1057' => 'tar', 'TAR625G1285' => 'tar', 'TAR629G3085' => 'tar', 'THA.LOC104807206' => 'tha', 'THA.LOC104811582' => 'tha', 'THA.LOC104818181' => 'tha', 'THA.LOC104821523' => 'tha', 'THA.LOC104825021' => 'tha', 'Thecc.01G142100' => 'tca', 'Thecc.03G130700' => 'tca', 'Thhalv10003950m.g' => 'esa', 'Thhalv10010265m.g' => 'esa', 'Thhalv10013164m.g' => 'esa', 'Thhalv10016029m.g' => 'esa', 'Thhalv10016477m.g' => 'esa', 'TPR.G12801' => 'tpr', 'TPR.G37383' => 'tpr', 'TPR.G7877' => 'tpr', 'TWI31G0638' => 'twi', 'TWI39G1126' => 'twi', 'TWI75G1347' => 'twi', 'unitig_0.g1248' => 'ugi', 'unitig_27.g25093' => 'ugi', 'unitig_27.g25094' => 'ugi', 'unitig_46.g18653' => 'ugi', 'vmacro16728' => 'vma', 'vmacro18675' => 'vma', 'vmacro19122' => 'vma', 'VMungo0251G0294' => 'vmu', 'VMungo0251G2672' => 'vmu', 'VMungo0300G0001' => 'vmu', 'VMungo1309G0322' => 'vmu', 'VMungo1309G2575' => 'vmu', 'Zm00001eb028380' => 'zma', 'Zm00001eb091750' => 'zma', 'Zm00001eb143070' => 'zma', 'Zm00001eb169430' => 'zma', 'Zm00001eb180140' => 'zma', 'Zm00001eb200900' => 'zma', 'Zm00001eb364290' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001512' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001512' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001512' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001512' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001512', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '419', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p12690' => 'bna', 'A02p42760' => 'bna', 'A04p28020' => 'bna', 'A05p09290' => 'bna', 'A06p30120' => 'bna', 'A07p21340' => 'bna', 'A09p08290' => 'bna', 'A09p46020' => 'bna', 'Aa31LG10G8160' => 'aar', 'Aa31LG10G9440' => 'aar', 'Aa31LG1G18550' => 'aar', 'Aa31LG3G7010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.478' => 'aag', 'Actinidia01948' => 'ach', 'Actinidia03791' => 'ach', 'Actinidia08883' => 'ach', 'Actinidia16514' => 'ach', 'Actinidia25412' => 'ach', 'Actinidia36819' => 'ach', 'Ah.02g117690' => 'amhyb', 'Ah.06g188570' => 'amhyb', 'Ah.11g045480' => 'amhyb', 'AL4G32690' => 'aly', 'AL5G33740' => 'aly', 'AL8G24800' => 'aly', 'AL8G40550' => 'aly', 'Aqoxy2G02638' => 'aox', 'Aqoxy3G00665' => 'aox', 'Aqoxy5G03323' => 'aox', 'Aqoxy6G00219' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38E3HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7YN7DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS8SB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMD6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD6YD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q310BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ9QMJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V82Y8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5G5FZ' => 'arhy', 'AT2G36500' => 'ath', 'AT3G52950' => 'ath', 'AT5G50530' => 'ath', 'AT5G50640' => 'ath', 'AT5G63490' => 'ath', 'ATR0561G050' => 'atr', 'ATR0584G131' => 'atr', 'Atru.chr4.1114' => 'acertr', 'Atru.chr6.1814' => 'acertr', 'AUR62000555' => 'cqu', 'AUR62006907' => 'cqu', 'AUR62029590' => 'cqu', 'AUR62034845' => 'cqu', 'BcaB01g00325' => 'bca', 'BcaB02g09349' => 'bca', 'BcaB02g09757' => 'bca', 'BcaB04g19921' => 'bca', 'BcaB05g24041' => 'bca', 'BcaB06g28949' => 'bca', 'BcaB07g29689' => 'bca', 'BcaC01g06927' => 'bca', 'BcaC02g07587' => 'bca', 'BcaC02g11769' => 'bca', 'BcaC03g14642' => 'bca', 'BcaC03g18208' => 'bca', 'BcaC04g23333' => 'bca', 'BcaC07g39658' => 'bca', 'BcaC08g44615' => 'bca', 'BolC2t08217H' => 'bol', 'BolC2t12346H' => 'bol', 'BolC3t18549H' => 'bol', 'BolC4t22807H' => 'bol', 'BolC4t28031H' => 'bol', 'BolC6t37274H' => 'bol', 'BolC8t50433H' => 'bol', 'BolC9t53849H' => 'bol', 'BraA02t06324Z' => 'bra', 'BraA02t09202Z' => 'bra', 'BraA04t18289Z' => 'bra', 'BraA05t19886Z' => 'bra', 'BraA06t25963Z' => 'bra', 'BraA07t29821Z' => 'bra', 'BraA09t36479Z' => 'bra', 'BraA09t40064Z' => 'bra', 'C02p20760' => 'bna', 'C02p62750' => 'bna', 'C03p62950' => 'bna', 'C04p11590' => 'bna', 'C04p65420' => 'bna', 'C06p20870' => 'bna', 'C08p28210' => 'bna', 'C09p09370' => 'bna', 'CAN.G1611.9' => 'can', 'CAN.G2.33' => 'can', 'CAN.G2.34' => 'can', 'CAN.G65.52' => 'can', 'CAN.G94.8' => 'can', 'CANSAT01G2139' => 'cansat', 'CANSAT80G1300' => 'cansat', 'CARHR130810' => 'chi', 'CARHR162830' => 'chi', 'CARHR257720' => 'chi', 'CARHR277340' => 'chi', 'Carub.0004s1832' => 'cru', 'Carub.0005s1943' => 'cru', 'Carub.0008s1064' => 'cru', 'Carub.0008s2419' => 'cru', 'Ca_16055_v3' => 'car', 'Ca_17003_v3' => 'car', 'Ca_17559_v3' => 'car', 'Ca_17608_v3' => 'car', 'Ca_30661_v3' => 'car', 'CBR_g40427' => 'cbr', 'Cc04_g10010' => 'ccan', 'Cc07_g19540' => 'ccan', 'CDE02G3776' => 'cde', 'CDE05G1880' => 'cde', 'CDE05G2144' => 'cde', 'CDE05G2627' => 'cde', 'Cfa002165' => 'cfa', 'Ciclev10000793m.g' => 'ccl', 'Ciclev10031167m.g' => 'ccl', 'CiPaw.03G115300' => 'cil', 'CiPaw.11G006000' => 'cil', 'CiPaw.12G044200' => 'cil', 'ClCG04G001750' => 'cla', 'ClCG06G017990' => 'cla', 'COL.COLO4_12115' => 'col', 'COL.COLO4_28145' => 'col', 'Cpa.g.c39311' => 'cpa', 'Cpa.g.sc13.98' => 'cpa', 'Cpa.g.sc37.40' => 'cpa', 'CsaV3_1G000480' => 'csa', 'CsaV3_4G030800' => 'csa', 'CSS0002692' => 'camsi', 'CSS0007571' => 'camsi', 'CSS0009668' => 'camsi', 'CSS0010143' => 'camsi', 'CSS0030126' => 'camsi', 'CSS0031225' => 'camsi', 'CSS0032112' => 'camsi', 'CSS0046540' => 'camsi', 'DCAR_007498' => 'dca', 'DCAR_019959' => 'dca', 'DCAR_021626' => 'dca', 'Dinv07261' => 'din', 'Dinv07460' => 'din', 'Dinv11185' => 'din', 'Dinv23161' => 'din', 'Duzib068G0263' => 'dzi', 'Duzib147G0677' => 'dzi', 'Duzib205G0934' => 'dzi', 'ECA232G4930' => 'eca', 'ECA233G3362' => 'eca', 'ECA246G0570' => 'eca', 'ECA247G2755' => 'eca', 'EL10Ac4g07714' => 'bvu', 'EL10Ac4g09663' => 'bvu', 'EL10Ac5g11397' => 'bvu', 'EL10Ac5g12267' => 'bvu', 'EL10Ac8g19613' => 'bvu', 'EL10Ac8g19826' => 'bvu', 'Eucgr.H05076' => 'egr', 'Eucgr.K02712' => 'egr', 'FAN04G1433' => 'fan', 'FAN08G0128' => 'fan', 'FAN13G0027' => 'fan', 'FAN18G0647' => 'fan', 'FAN19G0721' => 'fan', 'FAN23G1570' => 'fan', 'FAN26G1544' => 'fan', 'FAN28G1718' => 'fan', 'FvH4_1g25510' => 'fve', 'FvH4_5g08490' => 'fve', 'Glyma.04G196800' => 'gma', 'Glyma.04G207600' => 'gma', 'Glyma.05G195700' => 'gma', 'Glyma.05G204500' => 'gma', 'Glyma.06G158200' => 'gma', 'Glyma.06G169000' => 'gma', 'Glyma.08G003300' => 'gma', 'Glyma.08G011700' => 'gma', 'Gohir.A03G053000' => 'ghi', 'Gohir.A07G050400' => 'ghi', 'Gohir.A09G006300' => 'ghi', 'Gohir.A11G036700' => 'ghi', 'Gohir.A11G058100' => 'ghi', 'Gohir.D03G114100' => 'ghi', 'Gohir.D07G054900' => 'ghi', 'Gohir.D07G054933' => 'ghi', 'Gohir.D07G054966' => 'ghi', 'Gohir.D09G005400' => 'ghi', 'Gohir.D11G040000' => 'ghi', 'Gohir.D11G062300' => 'ghi', 'Gorai.001G058100' => 'gra', 'Gorai.003G120400' => 'gra', 'Gorai.006G007000' => 'gra', 'Gorai.007G043100' => 'gra', 'Gorai.007G067100' => 'gra', 'GSVIVG01008562001' => 'vvi', 'GSVIVG01022373001' => 'vvi', 'HanXRQChr04g0102961' => 'han', 'HanXRQChr05g0155121' => 'han', 'HanXRQChr06g0177011' => 'han', 'HanXRQChr08g0236831' => 'han', 'HanXRQChr09g0273341' => 'han', 'HanXRQChr12g0380471' => 'han', 'HanXRQChr16g0498061' => 'han', 'Haze_07154' => 'cav', 'Haze_25340' => 'cav', 'Hma1.2p1_0014F.1_g009290' => 'hma', 'Hma1.2p1_0957F.1_g241410' => 'hma', 'HPP92_004399' => 'vpl', 'HPP92_007007' => 'vpl', 'HPP92_007008' => 'vpl', 'HPP92_021564' => 'vpl', 'HPP92_021565' => 'vpl', 'HPP92_021600' => 'vpl', 'HPP92_025260' => 'vpl', 'HPP92_025274' => 'vpl', 'HPP92_027136' => 'vpl', 'HPP92_027805' => 'vpl', 'Hund02449' => 'sun', 'Hund07207' => 'sun', 'Hund07208' => 'sun', 'Hund07209' => 'sun', 'Hund10150' => 'sun', 'Hund21789' => 'sun', 'Lalb_Chr07g0183491' => 'lal', 'Lalb_Chr07g0184171' => 'lal', 'Lalb_Chr08g0237251' => 'lal', 'Lalb_Chr08g0237971' => 'lal', 'Lalb_Chr08g0237981' => 'lal', 'Lalb_Chr12g0202241' => 'lal', 'Lalb_Chr12g0202901' => 'lal', 'Lj1g0001167' => 'lja', 'Lj1g0025578' => 'lja', 'Lj2C608G4' => 'lonja', 'Lj4g0004546' => 'lja', 'Lj4g0017068' => 'lja', 'Lj5A95T76' => 'lonja', 'Lj9A480T83' => 'lonja', 'Lsat_1_v5_gn_1_33080' => 'lsa', 'Lsat_1_v5_gn_2_57801' => 'lsa', 'Lsat_1_v5_gn_4_165060' => 'lsa', 'Lsat_1_v5_gn_4_81321' => 'lsa', 'Lsat_1_v5_gn_5_11720' => 'lsa', 'Lsat_1_v5_gn_5_49701' => 'lsa', 'Lsat_1_v5_gn_5_69140' => 'lsa', 'Manes.06G120600' => 'mes', 'Manes.12G080101' => 'mes', 'Manes.14G050200' => 'mes', 'Mapoly0179s0023' => 'mpo', 'MBI11_g22678_MAGBIO' => 'mbi', 'MBI11_g41401_MAGBIO' => 'mbi', 'MBI16_g07663_MAGBIO' => 'mbi', 'MD05G1065700' => 'mdo', 'MD06G1140500' => 'mdo', 'MD08G1110100' => 'mdo', 'MD08G1219400' => 'mdo', 'MD14G1155700' => 'mdo', 'MD15G1408000' => 'mdo', 'Medtr3g097010' => 'mtr', 'Medtr3g099100' => 'mtr', 'Medtr7g114800' => 'mtr', 'Medtr8g044820' => 'mtr', 'Medtr8g094780' => 'mtr', 'Medtr8g096850' => 'mtr', 'MELO3C008947.2' => 'cme', 'MELO3C026200.2' => 'cme', 'Migut.D01272' => 'egut', 'Migut.H00837' => 'egut', 'Migut.H00846' => 'egut', 'Migut.I00538' => 'egut', 'MSTRG.23480' => 'ama', 'MSTRG.9331' => 'ama', 'Nitab4.5_0000432g0120' => 'nta', 'Nitab4.5_0000624g0120' => 'nta', 'Nitab4.5_0001311g0180' => 'nta', 'Nitab4.5_0001678g0070' => 'nta', 'Nitab4.5_0002028g0010' => 'nta', 'Nitab4.5_0003285g0050' => 'nta', 'Nitab4.5_0003948g0010' => 'nta', 'Nitab4.5_0004542g0030' => 'nta', 'Nn1g08797' => 'nnu', 'Nn3g16432' => 'nnu', 'Nn3g19431' => 'nnu', 'Nn4g24571' => 'nnu', 'Nn4g24572' => 'nnu', 'Nn5g28292' => 'nnu', 'Oeu004997.2' => 'oeu', 'Oeu029100.2' => 'oeu', 'Oeu042317.2' => 'oeu', 'Os01g0923300' => 'osa', 'Os01g0961200' => 'osa', 'Os11g0170300' => 'osa', 'Os11g0496400' => 'osa', 'Os12g0169400' => 'osa', 'Peaxi162Scf00089g00125' => 'pax', 'Peaxi162Scf00536g00516' => 'pax', 'Peaxi162Scf00763g00229' => 'pax', 'Peaxi162Scf01677g00006' => 'pax', 'PGR044G1660' => 'pgr', 'PGR083G0636' => 'pgr', 'PGR102G2822' => 'pgr', 'PGSC0003DMG400008480' => 'stu', 'PGSC0003DMG400015266' => 'stu', 'PGSC0003DMG400020525' => 'stu', 'PGSC0003DMG400034423' => 'stu', 'PGSC0003DMG402026974' => 'stu', 'Phvul.002G276200' => 'pvu', 'Phvul.002G286300' => 'pvu', 'Phvul.009G152100' => 'pvu', 'Phvul.009G165300' => 'pvu', 'Potri.005G070500' => 'ptr', 'Potri.007G098400' => 'ptr', 'Potri.012G099600' => 'ptr', 'Potri.015G098100' => 'ptr', 'Pp3c11_15160' => 'ppa', 'Pp3c1_14290' => 'ppa', 'Pp3c1_14310' => 'ppa', 'Pp3c2_26110' => 'ppa', 'Pp3c7_10070' => 'ppa', 'Prupe.1G553500' => 'ppe', 'Prupe.5G149700' => 'ppe', 'Psat5g052040' => 'psa', 'Psat5g058880' => 'psa', 'Psat7g036040' => 'psa', 'Psat7g043320' => 'psa', 'PSO017G0742' => 'pso', 'PSO017G3014' => 'pso', 'PSO478G2822' => 'pso', 'PSO478G3654' => 'pso', 'PSO528G0044' => 'pso', 'QL09p036442' => 'qlo', 'QL10p002635' => 'qlo', 'QL10p040171' => 'qlo', 'RcHm_v2.0_Chr2g0123641' => 'rch', 'RcHm_v2.0_Chr7g0189921' => 'rch', 'Rhsim08G0001800' => 'rsi', 'Rhsim08G0191300' => 'rsi', 'Rhsim12G0176100' => 'rsi', 'Sabra05G0057300' => 'sbr', 'Sabra07G0081800' => 'sbr', 'Sabra12G0072900' => 'sbr', 'Sabra15G0118700' => 'sbr', 'SalBow1G0068' => 'sbo', 'SalBow1G4612' => 'sbo', 'SalBow5G3778' => 'sbo', 'SalBow5G4742' => 'sbo', 'SalBow5G5176' => 'sbo', 'Sc04g0000540' => 'sci', 'Sc09g0002190' => 'sci', 'Sed0014432' => 'sed', 'Sed0016763' => 'sed', 'Sed0023597' => 'sed', 'SEGI_08213' => 'sgi', 'SEGI_12539' => 'sgi', 'SEGI_13889' => 'sgi', 'SEGI_34554' => 'sgi', 'SGA_v2.0_scaffold20G08971' => 'sas', 'SGA_v2.0_scaffold211G42166' => 'sas', 'SGA_v2.0_scaffold215G42347' => 'sas', 'SGA_v2.0_scaffold5G02861' => 'sas', 'SHI11435' => 'shi', 'SMO117G0006' => 'smo', 'SMO146G0075' => 'smo', 'SMO197G0110' => 'smo', 'Solyc03g019680.3' => 'sly', 'Solyc06g072050.4' => 'sly', 'Solyc12g032930.3' => 'sly', 'Solyc12g032950.3' => 'sly', 'Sopen03g029940' => 'spe', 'Sopen06g028340' => 'spe', 'Sopen12g013960' => 'spe', 'Sopen12g014050' => 'spe', 'Sp2g26570' => 'spa', 'Sp4g18810' => 'spa', 'Sp5g09380' => 'spa', 'Sp6g12710' => 'spa', 'TAR622G1057' => 'tar', 'TAR625G1285' => 'tar', 'TAR629G3085' => 'tar', 'THA.LOC104807206' => 'tha', 'THA.LOC104811582' => 'tha', 'THA.LOC104818181' => 'tha', 'THA.LOC104821523' => 'tha', 'THA.LOC104825021' => 'tha', 'Thecc.01G142100' => 'tca', 'Thecc.03G130700' => 'tca', 'Thhalv10003950m.g' => 'esa', 'Thhalv10010265m.g' => 'esa', 'Thhalv10013164m.g' => 'esa', 'Thhalv10016029m.g' => 'esa', 'Thhalv10016477m.g' => 'esa', 'TPR.G12801' => 'tpr', 'TPR.G37383' => 'tpr', 'TPR.G7877' => 'tpr', 'TWI31G0638' => 'twi', 'TWI39G1126' => 'twi', 'TWI75G1347' => 'twi', 'unitig_0.g1248' => 'ugi', 'unitig_27.g25093' => 'ugi', 'unitig_27.g25094' => 'ugi', 'unitig_46.g18653' => 'ugi', 'vmacro16728' => 'vma', 'vmacro18675' => 'vma', 'vmacro19122' => 'vma', 'VMungo0251G0294' => 'vmu', 'VMungo0251G2672' => 'vmu', 'VMungo0300G0001' => 'vmu', 'VMungo1309G0322' => 'vmu', 'VMungo1309G2575' => 'vmu', 'Zm00001eb028380' => 'zma', 'Zm00001eb091750' => 'zma', 'Zm00001eb143070' => 'zma', 'Zm00001eb169430' => 'zma', 'Zm00001eb180140' => 'zma', 'Zm00001eb200900' => 'zma', 'Zm00001eb364290' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001512', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001512' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001512', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '419', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001512' ) ), 'genes' => array( 'A02p12690' => 'bna', 'A02p42760' => 'bna', 'A04p28020' => 'bna', 'A05p09290' => 'bna', 'A06p30120' => 'bna', 'A07p21340' => 'bna', 'A09p08290' => 'bna', 'A09p46020' => 'bna', 'Aa31LG10G8160' => 'aar', 'Aa31LG10G9440' => 'aar', 'Aa31LG1G18550' => 'aar', 'Aa31LG3G7010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.478' => 'aag', 'Actinidia01948' => 'ach', 'Actinidia03791' => 'ach', 'Actinidia08883' => 'ach', 'Actinidia16514' => 'ach', 'Actinidia25412' => 'ach', 'Actinidia36819' => 'ach', 'Ah.02g117690' => 'amhyb', 'Ah.06g188570' => 'amhyb', 'Ah.11g045480' => 'amhyb', 'AL4G32690' => 'aly', 'AL5G33740' => 'aly', 'AL8G24800' => 'aly', 'AL8G40550' => 'aly', 'Aqoxy2G02638' => 'aox', 'Aqoxy3G00665' => 'aox', 'Aqoxy5G03323' => 'aox', 'Aqoxy6G00219' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38E3HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7YN7DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS8SB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMD6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD6YD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q310BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ9QMJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V82Y8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5G5FZ' => 'arhy', 'AT2G36500' => 'ath', 'AT3G52950' => 'ath', 'AT5G50530' => 'ath', 'AT5G50640' => 'ath', 'AT5G63490' => 'ath', 'ATR0561G050' => 'atr', 'ATR0584G131' => 'atr', 'Atru.chr4.1114' => 'acertr', 'Atru.chr6.1814' => 'acertr', 'AUR62000555' => 'cqu', 'AUR62006907' => 'cqu', 'AUR62029590' => 'cqu', 'AUR62034845' => 'cqu', 'BcaB01g00325' => 'bca', 'BcaB02g09349' => 'bca', 'BcaB02g09757' => 'bca', 'BcaB04g19921' => 'bca', 'BcaB05g24041' => 'bca', 'BcaB06g28949' => 'bca', 'BcaB07g29689' => 'bca', 'BcaC01g06927' => 'bca', 'BcaC02g07587' => 'bca', 'BcaC02g11769' => 'bca', 'BcaC03g14642' => 'bca', 'BcaC03g18208' => 'bca', 'BcaC04g23333' => 'bca', 'BcaC07g39658' => 'bca', 'BcaC08g44615' => 'bca', 'BolC2t08217H' => 'bol', 'BolC2t12346H' => 'bol', 'BolC3t18549H' => 'bol', 'BolC4t22807H' => 'bol', 'BolC4t28031H' => 'bol', 'BolC6t37274H' => 'bol', 'BolC8t50433H' => 'bol', 'BolC9t53849H' => 'bol', 'BraA02t06324Z' => 'bra', 'BraA02t09202Z' => 'bra', 'BraA04t18289Z' => 'bra', 'BraA05t19886Z' => 'bra', 'BraA06t25963Z' => 'bra', 'BraA07t29821Z' => 'bra', 'BraA09t36479Z' => 'bra', 'BraA09t40064Z' => 'bra', 'C02p20760' => 'bna', 'C02p62750' => 'bna', 'C03p62950' => 'bna', 'C04p11590' => 'bna', 'C04p65420' => 'bna', 'C06p20870' => 'bna', 'C08p28210' => 'bna', 'C09p09370' => 'bna', 'CAN.G1611.9' => 'can', 'CAN.G2.33' => 'can', 'CAN.G2.34' => 'can', 'CAN.G65.52' => 'can', 'CAN.G94.8' => 'can', 'CANSAT01G2139' => 'cansat', 'CANSAT80G1300' => 'cansat', 'CARHR130810' => 'chi', 'CARHR162830' => 'chi', 'CARHR257720' => 'chi', 'CARHR277340' => 'chi', 'Carub.0004s1832' => 'cru', 'Carub.0005s1943' => 'cru', 'Carub.0008s1064' => 'cru', 'Carub.0008s2419' => 'cru', 'Ca_16055_v3' => 'car', 'Ca_17003_v3' => 'car', 'Ca_17559_v3' => 'car', 'Ca_17608_v3' => 'car', 'Ca_30661_v3' => 'car', 'CBR_g40427' => 'cbr', 'Cc04_g10010' => 'ccan', 'Cc07_g19540' => 'ccan', 'CDE02G3776' => 'cde', 'CDE05G1880' => 'cde', 'CDE05G2144' => 'cde', 'CDE05G2627' => 'cde', 'Cfa002165' => 'cfa', 'Ciclev10000793m.g' => 'ccl', 'Ciclev10031167m.g' => 'ccl', 'CiPaw.03G115300' => 'cil', 'CiPaw.11G006000' => 'cil', 'CiPaw.12G044200' => 'cil', 'ClCG04G001750' => 'cla', 'ClCG06G017990' => 'cla', 'COL.COLO4_12115' => 'col', 'COL.COLO4_28145' => 'col', 'Cpa.g.c39311' => 'cpa', 'Cpa.g.sc13.98' => 'cpa', 'Cpa.g.sc37.40' => 'cpa', 'CsaV3_1G000480' => 'csa', 'CsaV3_4G030800' => 'csa', 'CSS0002692' => 'camsi', 'CSS0007571' => 'camsi', 'CSS0009668' => 'camsi', 'CSS0010143' => 'camsi', 'CSS0030126' => 'camsi', 'CSS0031225' => 'camsi', 'CSS0032112' => 'camsi', 'CSS0046540' => 'camsi', 'DCAR_007498' => 'dca', 'DCAR_019959' => 'dca', 'DCAR_021626' => 'dca', 'Dinv07261' => 'din', 'Dinv07460' => 'din', 'Dinv11185' => 'din', 'Dinv23161' => 'din', 'Duzib068G0263' => 'dzi', 'Duzib147G0677' => 'dzi', 'Duzib205G0934' => 'dzi', 'ECA232G4930' => 'eca', 'ECA233G3362' => 'eca', 'ECA246G0570' => 'eca', 'ECA247G2755' => 'eca', 'EL10Ac4g07714' => 'bvu', 'EL10Ac4g09663' => 'bvu', 'EL10Ac5g11397' => 'bvu', 'EL10Ac5g12267' => 'bvu', 'EL10Ac8g19613' => 'bvu', 'EL10Ac8g19826' => 'bvu', 'Eucgr.H05076' => 'egr', 'Eucgr.K02712' => 'egr', 'FAN04G1433' => 'fan', 'FAN08G0128' => 'fan', 'FAN13G0027' => 'fan', 'FAN18G0647' => 'fan', 'FAN19G0721' => 'fan', 'FAN23G1570' => 'fan', 'FAN26G1544' => 'fan', 'FAN28G1718' => 'fan', 'FvH4_1g25510' => 'fve', 'FvH4_5g08490' => 'fve', 'Glyma.04G196800' => 'gma', 'Glyma.04G207600' => 'gma', 'Glyma.05G195700' => 'gma', 'Glyma.05G204500' => 'gma', 'Glyma.06G158200' => 'gma', 'Glyma.06G169000' => 'gma', 'Glyma.08G003300' => 'gma', 'Glyma.08G011700' => 'gma', 'Gohir.A03G053000' => 'ghi', 'Gohir.A07G050400' => 'ghi', 'Gohir.A09G006300' => 'ghi', 'Gohir.A11G036700' => 'ghi', 'Gohir.A11G058100' => 'ghi', 'Gohir.D03G114100' => 'ghi', 'Gohir.D07G054900' => 'ghi', 'Gohir.D07G054933' => 'ghi', 'Gohir.D07G054966' => 'ghi', 'Gohir.D09G005400' => 'ghi', 'Gohir.D11G040000' => 'ghi', 'Gohir.D11G062300' => 'ghi', 'Gorai.001G058100' => 'gra', 'Gorai.003G120400' => 'gra', 'Gorai.006G007000' => 'gra', 'Gorai.007G043100' => 'gra', 'Gorai.007G067100' => 'gra', 'GSVIVG01008562001' => 'vvi', 'GSVIVG01022373001' => 'vvi', 'HanXRQChr04g0102961' => 'han', 'HanXRQChr05g0155121' => 'han', 'HanXRQChr06g0177011' => 'han', 'HanXRQChr08g0236831' => 'han', 'HanXRQChr09g0273341' => 'han', 'HanXRQChr12g0380471' => 'han', 'HanXRQChr16g0498061' => 'han', 'Haze_07154' => 'cav', 'Haze_25340' => 'cav', 'Hma1.2p1_0014F.1_g009290' => 'hma', 'Hma1.2p1_0957F.1_g241410' => 'hma', 'HPP92_004399' => 'vpl', 'HPP92_007007' => 'vpl', 'HPP92_007008' => 'vpl', 'HPP92_021564' => 'vpl', 'HPP92_021565' => 'vpl', 'HPP92_021600' => 'vpl', 'HPP92_025260' => 'vpl', 'HPP92_025274' => 'vpl', 'HPP92_027136' => 'vpl', 'HPP92_027805' => 'vpl', 'Hund02449' => 'sun', 'Hund07207' => 'sun', 'Hund07208' => 'sun', 'Hund07209' => 'sun', 'Hund10150' => 'sun', 'Hund21789' => 'sun', 'Lalb_Chr07g0183491' => 'lal', 'Lalb_Chr07g0184171' => 'lal', 'Lalb_Chr08g0237251' => 'lal', 'Lalb_Chr08g0237971' => 'lal', 'Lalb_Chr08g0237981' => 'lal', 'Lalb_Chr12g0202241' => 'lal', 'Lalb_Chr12g0202901' => 'lal', 'Lj1g0001167' => 'lja', 'Lj1g0025578' => 'lja', 'Lj2C608G4' => 'lonja', 'Lj4g0004546' => 'lja', 'Lj4g0017068' => 'lja', 'Lj5A95T76' => 'lonja', 'Lj9A480T83' => 'lonja', 'Lsat_1_v5_gn_1_33080' => 'lsa', 'Lsat_1_v5_gn_2_57801' => 'lsa', 'Lsat_1_v5_gn_4_165060' => 'lsa', 'Lsat_1_v5_gn_4_81321' => 'lsa', 'Lsat_1_v5_gn_5_11720' => 'lsa', 'Lsat_1_v5_gn_5_49701' => 'lsa', 'Lsat_1_v5_gn_5_69140' => 'lsa', 'Manes.06G120600' => 'mes', 'Manes.12G080101' => 'mes', 'Manes.14G050200' => 'mes', 'Mapoly0179s0023' => 'mpo', 'MBI11_g22678_MAGBIO' => 'mbi', 'MBI11_g41401_MAGBIO' => 'mbi', 'MBI16_g07663_MAGBIO' => 'mbi', 'MD05G1065700' => 'mdo', 'MD06G1140500' => 'mdo', 'MD08G1110100' => 'mdo', 'MD08G1219400' => 'mdo', 'MD14G1155700' => 'mdo', 'MD15G1408000' => 'mdo', 'Medtr3g097010' => 'mtr', 'Medtr3g099100' => 'mtr', 'Medtr7g114800' => 'mtr', 'Medtr8g044820' => 'mtr', 'Medtr8g094780' => 'mtr', 'Medtr8g096850' => 'mtr', 'MELO3C008947.2' => 'cme', 'MELO3C026200.2' => 'cme', 'Migut.D01272' => 'egut', 'Migut.H00837' => 'egut', 'Migut.H00846' => 'egut', 'Migut.I00538' => 'egut', 'MSTRG.23480' => 'ama', 'MSTRG.9331' => 'ama', 'Nitab4.5_0000432g0120' => 'nta', 'Nitab4.5_0000624g0120' => 'nta', 'Nitab4.5_0001311g0180' => 'nta', 'Nitab4.5_0001678g0070' => 'nta', 'Nitab4.5_0002028g0010' => 'nta', 'Nitab4.5_0003285g0050' => 'nta', 'Nitab4.5_0003948g0010' => 'nta', 'Nitab4.5_0004542g0030' => 'nta', 'Nn1g08797' => 'nnu', 'Nn3g16432' => 'nnu', 'Nn3g19431' => 'nnu', 'Nn4g24571' => 'nnu', 'Nn4g24572' => 'nnu', 'Nn5g28292' => 'nnu', 'Oeu004997.2' => 'oeu', 'Oeu029100.2' => 'oeu', 'Oeu042317.2' => 'oeu', 'Os01g0923300' => 'osa', 'Os01g0961200' => 'osa', 'Os11g0170300' => 'osa', 'Os11g0496400' => 'osa', 'Os12g0169400' => 'osa', 'Peaxi162Scf00089g00125' => 'pax', 'Peaxi162Scf00536g00516' => 'pax', 'Peaxi162Scf00763g00229' => 'pax', 'Peaxi162Scf01677g00006' => 'pax', 'PGR044G1660' => 'pgr', 'PGR083G0636' => 'pgr', 'PGR102G2822' => 'pgr', 'PGSC0003DMG400008480' => 'stu', 'PGSC0003DMG400015266' => 'stu', 'PGSC0003DMG400020525' => 'stu', 'PGSC0003DMG400034423' => 'stu', 'PGSC0003DMG402026974' => 'stu', 'Phvul.002G276200' => 'pvu', 'Phvul.002G286300' => 'pvu', 'Phvul.009G152100' => 'pvu', 'Phvul.009G165300' => 'pvu', 'Potri.005G070500' => 'ptr', 'Potri.007G098400' => 'ptr', 'Potri.012G099600' => 'ptr', 'Potri.015G098100' => 'ptr', 'Pp3c11_15160' => 'ppa', 'Pp3c1_14290' => 'ppa', 'Pp3c1_14310' => 'ppa', 'Pp3c2_26110' => 'ppa', 'Pp3c7_10070' => 'ppa', 'Prupe.1G553500' => 'ppe', 'Prupe.5G149700' => 'ppe', 'Psat5g052040' => 'psa', 'Psat5g058880' => 'psa', 'Psat7g036040' => 'psa', 'Psat7g043320' => 'psa', 'PSO017G0742' => 'pso', 'PSO017G3014' => 'pso', 'PSO478G2822' => 'pso', 'PSO478G3654' => 'pso', 'PSO528G0044' => 'pso', 'QL09p036442' => 'qlo', 'QL10p002635' => 'qlo', 'QL10p040171' => 'qlo', 'RcHm_v2.0_Chr2g0123641' => 'rch', 'RcHm_v2.0_Chr7g0189921' => 'rch', 'Rhsim08G0001800' => 'rsi', 'Rhsim08G0191300' => 'rsi', 'Rhsim12G0176100' => 'rsi', 'Sabra05G0057300' => 'sbr', 'Sabra07G0081800' => 'sbr', 'Sabra12G0072900' => 'sbr', 'Sabra15G0118700' => 'sbr', 'SalBow1G0068' => 'sbo', 'SalBow1G4612' => 'sbo', 'SalBow5G3778' => 'sbo', 'SalBow5G4742' => 'sbo', 'SalBow5G5176' => 'sbo', 'Sc04g0000540' => 'sci', 'Sc09g0002190' => 'sci', 'Sed0014432' => 'sed', 'Sed0016763' => 'sed', 'Sed0023597' => 'sed', 'SEGI_08213' => 'sgi', 'SEGI_12539' => 'sgi', 'SEGI_13889' => 'sgi', 'SEGI_34554' => 'sgi', 'SGA_v2.0_scaffold20G08971' => 'sas', 'SGA_v2.0_scaffold211G42166' => 'sas', 'SGA_v2.0_scaffold215G42347' => 'sas', 'SGA_v2.0_scaffold5G02861' => 'sas', 'SHI11435' => 'shi', 'SMO117G0006' => 'smo', 'SMO146G0075' => 'smo', 'SMO197G0110' => 'smo', 'Solyc03g019680.3' => 'sly', 'Solyc06g072050.4' => 'sly', 'Solyc12g032930.3' => 'sly', 'Solyc12g032950.3' => 'sly', 'Sopen03g029940' => 'spe', 'Sopen06g028340' => 'spe', 'Sopen12g013960' => 'spe', 'Sopen12g014050' => 'spe', 'Sp2g26570' => 'spa', 'Sp4g18810' => 'spa', 'Sp5g09380' => 'spa', 'Sp6g12710' => 'spa', 'TAR622G1057' => 'tar', 'TAR625G1285' => 'tar', 'TAR629G3085' => 'tar', 'THA.LOC104807206' => 'tha', 'THA.LOC104811582' => 'tha', 'THA.LOC104818181' => 'tha', 'THA.LOC104821523' => 'tha', 'THA.LOC104825021' => 'tha', 'Thecc.01G142100' => 'tca', 'Thecc.03G130700' => 'tca', 'Thhalv10003950m.g' => 'esa', 'Thhalv10010265m.g' => 'esa', 'Thhalv10013164m.g' => 'esa', 'Thhalv10016029m.g' => 'esa', 'Thhalv10016477m.g' => 'esa', 'TPR.G12801' => 'tpr', 'TPR.G37383' => 'tpr', 'TPR.G7877' => 'tpr', 'TWI31G0638' => 'twi', 'TWI39G1126' => 'twi', 'TWI75G1347' => 'twi', 'unitig_0.g1248' => 'ugi', 'unitig_27.g25093' => 'ugi', 'unitig_27.g25094' => 'ugi', 'unitig_46.g18653' => 'ugi', 'vmacro16728' => 'vma', 'vmacro18675' => 'vma', 'vmacro19122' => 'vma', 'VMungo0251G0294' => 'vmu', 'VMungo0251G2672' => 'vmu', 'VMungo0300G0001' => 'vmu', 'VMungo1309G0322' => 'vmu', 'VMungo1309G2575' => 'vmu', 'Zm00001eb028380' => 'zma', 'Zm00001eb091750' => 'zma', 'Zm00001eb143070' => 'zma', 'Zm00001eb169430' => 'zma', 'Zm00001eb180140' => 'zma', 'Zm00001eb200900' => 'zma', 'Zm00001eb364290' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001512' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001512' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001512' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001512' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001512', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '419', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p12690' => 'bna', 'A02p42760' => 'bna', 'A04p28020' => 'bna', 'A05p09290' => 'bna', 'A06p30120' => 'bna', 'A07p21340' => 'bna', 'A09p08290' => 'bna', 'A09p46020' => 'bna', 'Aa31LG10G8160' => 'aar', 'Aa31LG10G9440' => 'aar', 'Aa31LG1G18550' => 'aar', 'Aa31LG3G7010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.478' => 'aag', 'Actinidia01948' => 'ach', 'Actinidia03791' => 'ach', 'Actinidia08883' => 'ach', 'Actinidia16514' => 'ach', 'Actinidia25412' => 'ach', 'Actinidia36819' => 'ach', 'Ah.02g117690' => 'amhyb', 'Ah.06g188570' => 'amhyb', 'Ah.11g045480' => 'amhyb', 'AL4G32690' => 'aly', 'AL5G33740' => 'aly', 'AL8G24800' => 'aly', 'AL8G40550' => 'aly', 'Aqoxy2G02638' => 'aox', 'Aqoxy3G00665' => 'aox', 'Aqoxy5G03323' => 'aox', 'Aqoxy6G00219' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38E3HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7YN7DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS8SB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMD6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD6YD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q310BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ9QMJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V82Y8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5G5FZ' => 'arhy', 'AT2G36500' => 'ath', 'AT3G52950' => 'ath', 'AT5G50530' => 'ath', 'AT5G50640' => 'ath', 'AT5G63490' => 'ath', 'ATR0561G050' => 'atr', 'ATR0584G131' => 'atr', 'Atru.chr4.1114' => 'acertr', 'Atru.chr6.1814' => 'acertr', 'AUR62000555' => 'cqu', 'AUR62006907' => 'cqu', 'AUR62029590' => 'cqu', 'AUR62034845' => 'cqu', 'BcaB01g00325' => 'bca', 'BcaB02g09349' => 'bca', 'BcaB02g09757' => 'bca', 'BcaB04g19921' => 'bca', 'BcaB05g24041' => 'bca', 'BcaB06g28949' => 'bca', 'BcaB07g29689' => 'bca', 'BcaC01g06927' => 'bca', 'BcaC02g07587' => 'bca', 'BcaC02g11769' => 'bca', 'BcaC03g14642' => 'bca', 'BcaC03g18208' => 'bca', 'BcaC04g23333' => 'bca', 'BcaC07g39658' => 'bca', 'BcaC08g44615' => 'bca', 'BolC2t08217H' => 'bol', 'BolC2t12346H' => 'bol', 'BolC3t18549H' => 'bol', 'BolC4t22807H' => 'bol', 'BolC4t28031H' => 'bol', 'BolC6t37274H' => 'bol', 'BolC8t50433H' => 'bol', 'BolC9t53849H' => 'bol', 'BraA02t06324Z' => 'bra', 'BraA02t09202Z' => 'bra', 'BraA04t18289Z' => 'bra', 'BraA05t19886Z' => 'bra', 'BraA06t25963Z' => 'bra', 'BraA07t29821Z' => 'bra', 'BraA09t36479Z' => 'bra', 'BraA09t40064Z' => 'bra', 'C02p20760' => 'bna', 'C02p62750' => 'bna', 'C03p62950' => 'bna', 'C04p11590' => 'bna', 'C04p65420' => 'bna', 'C06p20870' => 'bna', 'C08p28210' => 'bna', 'C09p09370' => 'bna', 'CAN.G1611.9' => 'can', 'CAN.G2.33' => 'can', 'CAN.G2.34' => 'can', 'CAN.G65.52' => 'can', 'CAN.G94.8' => 'can', 'CANSAT01G2139' => 'cansat', 'CANSAT80G1300' => 'cansat', 'CARHR130810' => 'chi', 'CARHR162830' => 'chi', 'CARHR257720' => 'chi', 'CARHR277340' => 'chi', 'Carub.0004s1832' => 'cru', 'Carub.0005s1943' => 'cru', 'Carub.0008s1064' => 'cru', 'Carub.0008s2419' => 'cru', 'Ca_16055_v3' => 'car', 'Ca_17003_v3' => 'car', 'Ca_17559_v3' => 'car', 'Ca_17608_v3' => 'car', 'Ca_30661_v3' => 'car', 'CBR_g40427' => 'cbr', 'Cc04_g10010' => 'ccan', 'Cc07_g19540' => 'ccan', 'CDE02G3776' => 'cde', 'CDE05G1880' => 'cde', 'CDE05G2144' => 'cde', 'CDE05G2627' => 'cde', 'Cfa002165' => 'cfa', 'Ciclev10000793m.g' => 'ccl', 'Ciclev10031167m.g' => 'ccl', 'CiPaw.03G115300' => 'cil', 'CiPaw.11G006000' => 'cil', 'CiPaw.12G044200' => 'cil', 'ClCG04G001750' => 'cla', 'ClCG06G017990' => 'cla', 'COL.COLO4_12115' => 'col', 'COL.COLO4_28145' => 'col', 'Cpa.g.c39311' => 'cpa', 'Cpa.g.sc13.98' => 'cpa', 'Cpa.g.sc37.40' => 'cpa', 'CsaV3_1G000480' => 'csa', 'CsaV3_4G030800' => 'csa', 'CSS0002692' => 'camsi', 'CSS0007571' => 'camsi', 'CSS0009668' => 'camsi', 'CSS0010143' => 'camsi', 'CSS0030126' => 'camsi', 'CSS0031225' => 'camsi', 'CSS0032112' => 'camsi', 'CSS0046540' => 'camsi', 'DCAR_007498' => 'dca', 'DCAR_019959' => 'dca', 'DCAR_021626' => 'dca', 'Dinv07261' => 'din', 'Dinv07460' => 'din', 'Dinv11185' => 'din', 'Dinv23161' => 'din', 'Duzib068G0263' => 'dzi', 'Duzib147G0677' => 'dzi', 'Duzib205G0934' => 'dzi', 'ECA232G4930' => 'eca', 'ECA233G3362' => 'eca', 'ECA246G0570' => 'eca', 'ECA247G2755' => 'eca', 'EL10Ac4g07714' => 'bvu', 'EL10Ac4g09663' => 'bvu', 'EL10Ac5g11397' => 'bvu', 'EL10Ac5g12267' => 'bvu', 'EL10Ac8g19613' => 'bvu', 'EL10Ac8g19826' => 'bvu', 'Eucgr.H05076' => 'egr', 'Eucgr.K02712' => 'egr', 'FAN04G1433' => 'fan', 'FAN08G0128' => 'fan', 'FAN13G0027' => 'fan', 'FAN18G0647' => 'fan', 'FAN19G0721' => 'fan', 'FAN23G1570' => 'fan', 'FAN26G1544' => 'fan', 'FAN28G1718' => 'fan', 'FvH4_1g25510' => 'fve', 'FvH4_5g08490' => 'fve', 'Glyma.04G196800' => 'gma', 'Glyma.04G207600' => 'gma', 'Glyma.05G195700' => 'gma', 'Glyma.05G204500' => 'gma', 'Glyma.06G158200' => 'gma', 'Glyma.06G169000' => 'gma', 'Glyma.08G003300' => 'gma', 'Glyma.08G011700' => 'gma', 'Gohir.A03G053000' => 'ghi', 'Gohir.A07G050400' => 'ghi', 'Gohir.A09G006300' => 'ghi', 'Gohir.A11G036700' => 'ghi', 'Gohir.A11G058100' => 'ghi', 'Gohir.D03G114100' => 'ghi', 'Gohir.D07G054900' => 'ghi', 'Gohir.D07G054933' => 'ghi', 'Gohir.D07G054966' => 'ghi', 'Gohir.D09G005400' => 'ghi', 'Gohir.D11G040000' => 'ghi', 'Gohir.D11G062300' => 'ghi', 'Gorai.001G058100' => 'gra', 'Gorai.003G120400' => 'gra', 'Gorai.006G007000' => 'gra', 'Gorai.007G043100' => 'gra', 'Gorai.007G067100' => 'gra', 'GSVIVG01008562001' => 'vvi', 'GSVIVG01022373001' => 'vvi', 'HanXRQChr04g0102961' => 'han', 'HanXRQChr05g0155121' => 'han', 'HanXRQChr06g0177011' => 'han', 'HanXRQChr08g0236831' => 'han', 'HanXRQChr09g0273341' => 'han', 'HanXRQChr12g0380471' => 'han', 'HanXRQChr16g0498061' => 'han', 'Haze_07154' => 'cav', 'Haze_25340' => 'cav', 'Hma1.2p1_0014F.1_g009290' => 'hma', 'Hma1.2p1_0957F.1_g241410' => 'hma', 'HPP92_004399' => 'vpl', 'HPP92_007007' => 'vpl', 'HPP92_007008' => 'vpl', 'HPP92_021564' => 'vpl', 'HPP92_021565' => 'vpl', 'HPP92_021600' => 'vpl', 'HPP92_025260' => 'vpl', 'HPP92_025274' => 'vpl', 'HPP92_027136' => 'vpl', 'HPP92_027805' => 'vpl', 'Hund02449' => 'sun', 'Hund07207' => 'sun', 'Hund07208' => 'sun', 'Hund07209' => 'sun', 'Hund10150' => 'sun', 'Hund21789' => 'sun', 'Lalb_Chr07g0183491' => 'lal', 'Lalb_Chr07g0184171' => 'lal', 'Lalb_Chr08g0237251' => 'lal', 'Lalb_Chr08g0237971' => 'lal', 'Lalb_Chr08g0237981' => 'lal', 'Lalb_Chr12g0202241' => 'lal', 'Lalb_Chr12g0202901' => 'lal', 'Lj1g0001167' => 'lja', 'Lj1g0025578' => 'lja', 'Lj2C608G4' => 'lonja', 'Lj4g0004546' => 'lja', 'Lj4g0017068' => 'lja', 'Lj5A95T76' => 'lonja', 'Lj9A480T83' => 'lonja', 'Lsat_1_v5_gn_1_33080' => 'lsa', 'Lsat_1_v5_gn_2_57801' => 'lsa', 'Lsat_1_v5_gn_4_165060' => 'lsa', 'Lsat_1_v5_gn_4_81321' => 'lsa', 'Lsat_1_v5_gn_5_11720' => 'lsa', 'Lsat_1_v5_gn_5_49701' => 'lsa', 'Lsat_1_v5_gn_5_69140' => 'lsa', 'Manes.06G120600' => 'mes', 'Manes.12G080101' => 'mes', 'Manes.14G050200' => 'mes', 'Mapoly0179s0023' => 'mpo', 'MBI11_g22678_MAGBIO' => 'mbi', 'MBI11_g41401_MAGBIO' => 'mbi', 'MBI16_g07663_MAGBIO' => 'mbi', 'MD05G1065700' => 'mdo', 'MD06G1140500' => 'mdo', 'MD08G1110100' => 'mdo', 'MD08G1219400' => 'mdo', 'MD14G1155700' => 'mdo', 'MD15G1408000' => 'mdo', 'Medtr3g097010' => 'mtr', 'Medtr3g099100' => 'mtr', 'Medtr7g114800' => 'mtr', 'Medtr8g044820' => 'mtr', 'Medtr8g094780' => 'mtr', 'Medtr8g096850' => 'mtr', 'MELO3C008947.2' => 'cme', 'MELO3C026200.2' => 'cme', 'Migut.D01272' => 'egut', 'Migut.H00837' => 'egut', 'Migut.H00846' => 'egut', 'Migut.I00538' => 'egut', 'MSTRG.23480' => 'ama', 'MSTRG.9331' => 'ama', 'Nitab4.5_0000432g0120' => 'nta', 'Nitab4.5_0000624g0120' => 'nta', 'Nitab4.5_0001311g0180' => 'nta', 'Nitab4.5_0001678g0070' => 'nta', 'Nitab4.5_0002028g0010' => 'nta', 'Nitab4.5_0003285g0050' => 'nta', 'Nitab4.5_0003948g0010' => 'nta', 'Nitab4.5_0004542g0030' => 'nta', 'Nn1g08797' => 'nnu', 'Nn3g16432' => 'nnu', 'Nn3g19431' => 'nnu', 'Nn4g24571' => 'nnu', 'Nn4g24572' => 'nnu', 'Nn5g28292' => 'nnu', 'Oeu004997.2' => 'oeu', 'Oeu029100.2' => 'oeu', 'Oeu042317.2' => 'oeu', 'Os01g0923300' => 'osa', 'Os01g0961200' => 'osa', 'Os11g0170300' => 'osa', 'Os11g0496400' => 'osa', 'Os12g0169400' => 'osa', 'Peaxi162Scf00089g00125' => 'pax', 'Peaxi162Scf00536g00516' => 'pax', 'Peaxi162Scf00763g00229' => 'pax', 'Peaxi162Scf01677g00006' => 'pax', 'PGR044G1660' => 'pgr', 'PGR083G0636' => 'pgr', 'PGR102G2822' => 'pgr', 'PGSC0003DMG400008480' => 'stu', 'PGSC0003DMG400015266' => 'stu', 'PGSC0003DMG400020525' => 'stu', 'PGSC0003DMG400034423' => 'stu', 'PGSC0003DMG402026974' => 'stu', 'Phvul.002G276200' => 'pvu', 'Phvul.002G286300' => 'pvu', 'Phvul.009G152100' => 'pvu', 'Phvul.009G165300' => 'pvu', 'Potri.005G070500' => 'ptr', 'Potri.007G098400' => 'ptr', 'Potri.012G099600' => 'ptr', 'Potri.015G098100' => 'ptr', 'Pp3c11_15160' => 'ppa', 'Pp3c1_14290' => 'ppa', 'Pp3c1_14310' => 'ppa', 'Pp3c2_26110' => 'ppa', 'Pp3c7_10070' => 'ppa', 'Prupe.1G553500' => 'ppe', 'Prupe.5G149700' => 'ppe', 'Psat5g052040' => 'psa', 'Psat5g058880' => 'psa', 'Psat7g036040' => 'psa', 'Psat7g043320' => 'psa', 'PSO017G0742' => 'pso', 'PSO017G3014' => 'pso', 'PSO478G2822' => 'pso', 'PSO478G3654' => 'pso', 'PSO528G0044' => 'pso', 'QL09p036442' => 'qlo', 'QL10p002635' => 'qlo', 'QL10p040171' => 'qlo', 'RcHm_v2.0_Chr2g0123641' => 'rch', 'RcHm_v2.0_Chr7g0189921' => 'rch', 'Rhsim08G0001800' => 'rsi', 'Rhsim08G0191300' => 'rsi', 'Rhsim12G0176100' => 'rsi', 'Sabra05G0057300' => 'sbr', 'Sabra07G0081800' => 'sbr', 'Sabra12G0072900' => 'sbr', 'Sabra15G0118700' => 'sbr', 'SalBow1G0068' => 'sbo', 'SalBow1G4612' => 'sbo', 'SalBow5G3778' => 'sbo', 'SalBow5G4742' => 'sbo', 'SalBow5G5176' => 'sbo', 'Sc04g0000540' => 'sci', 'Sc09g0002190' => 'sci', 'Sed0014432' => 'sed', 'Sed0016763' => 'sed', 'Sed0023597' => 'sed', 'SEGI_08213' => 'sgi', 'SEGI_12539' => 'sgi', 'SEGI_13889' => 'sgi', 'SEGI_34554' => 'sgi', 'SGA_v2.0_scaffold20G08971' => 'sas', 'SGA_v2.0_scaffold211G42166' => 'sas', 'SGA_v2.0_scaffold215G42347' => 'sas', 'SGA_v2.0_scaffold5G02861' => 'sas', 'SHI11435' => 'shi', 'SMO117G0006' => 'smo', 'SMO146G0075' => 'smo', 'SMO197G0110' => 'smo', 'Solyc03g019680.3' => 'sly', 'Solyc06g072050.4' => 'sly', 'Solyc12g032930.3' => 'sly', 'Solyc12g032950.3' => 'sly', 'Sopen03g029940' => 'spe', 'Sopen06g028340' => 'spe', 'Sopen12g013960' => 'spe', 'Sopen12g014050' => 'spe', 'Sp2g26570' => 'spa', 'Sp4g18810' => 'spa', 'Sp5g09380' => 'spa', 'Sp6g12710' => 'spa', 'TAR622G1057' => 'tar', 'TAR625G1285' => 'tar', 'TAR629G3085' => 'tar', 'THA.LOC104807206' => 'tha', 'THA.LOC104811582' => 'tha', 'THA.LOC104818181' => 'tha', 'THA.LOC104821523' => 'tha', 'THA.LOC104825021' => 'tha', 'Thecc.01G142100' => 'tca', 'Thecc.03G130700' => 'tca', 'Thhalv10003950m.g' => 'esa', 'Thhalv10010265m.g' => 'esa', 'Thhalv10013164m.g' => 'esa', 'Thhalv10016029m.g' => 'esa', 'Thhalv10016477m.g' => 'esa', 'TPR.G12801' => 'tpr', 'TPR.G37383' => 'tpr', 'TPR.G7877' => 'tpr', 'TWI31G0638' => 'twi', 'TWI39G1126' => 'twi', 'TWI75G1347' => 'twi', 'unitig_0.g1248' => 'ugi', 'unitig_27.g25093' => 'ugi', 'unitig_27.g25094' => 'ugi', 'unitig_46.g18653' => 'ugi', 'vmacro16728' => 'vma', 'vmacro18675' => 'vma', 'vmacro19122' => 'vma', 'VMungo0251G0294' => 'vmu', 'VMungo0251G2672' => 'vmu', 'VMungo0300G0001' => 'vmu', 'VMungo1309G0322' => 'vmu', 'VMungo1309G2575' => 'vmu', 'Zm00001eb028380' => 'zma', 'Zm00001eb091750' => 'zma', 'Zm00001eb143070' => 'zma', 'Zm00001eb169430' => 'zma', 'Zm00001eb180140' => 'zma', 'Zm00001eb200900' => 'zma', 'Zm00001eb364290' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001512', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001512' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001512', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '419', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001512' ) ), 'genes' => array( 'A02p12690' => 'bna', 'A02p42760' => 'bna', 'A04p28020' => 'bna', 'A05p09290' => 'bna', 'A06p30120' => 'bna', 'A07p21340' => 'bna', 'A09p08290' => 'bna', 'A09p46020' => 'bna', 'Aa31LG10G8160' => 'aar', 'Aa31LG10G9440' => 'aar', 'Aa31LG1G18550' => 'aar', 'Aa31LG3G7010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.478' => 'aag', 'Actinidia01948' => 'ach', 'Actinidia03791' => 'ach', 'Actinidia08883' => 'ach', 'Actinidia16514' => 'ach', 'Actinidia25412' => 'ach', 'Actinidia36819' => 'ach', 'Ah.02g117690' => 'amhyb', 'Ah.06g188570' => 'amhyb', 'Ah.11g045480' => 'amhyb', 'AL4G32690' => 'aly', 'AL5G33740' => 'aly', 'AL8G24800' => 'aly', 'AL8G40550' => 'aly', 'Aqoxy2G02638' => 'aox', 'Aqoxy3G00665' => 'aox', 'Aqoxy5G03323' => 'aox', 'Aqoxy6G00219' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38E3HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7YN7DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS8SB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMD6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD6YD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q310BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ9QMJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V82Y8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5G5FZ' => 'arhy', 'AT2G36500' => 'ath', 'AT3G52950' => 'ath', 'AT5G50530' => 'ath', 'AT5G50640' => 'ath', 'AT5G63490' => 'ath', 'ATR0561G050' => 'atr', 'ATR0584G131' => 'atr', 'Atru.chr4.1114' => 'acertr', 'Atru.chr6.1814' => 'acertr', 'AUR62000555' => 'cqu', 'AUR62006907' => 'cqu', 'AUR62029590' => 'cqu', 'AUR62034845' => 'cqu', 'BcaB01g00325' => 'bca', 'BcaB02g09349' => 'bca', 'BcaB02g09757' => 'bca', 'BcaB04g19921' => 'bca', 'BcaB05g24041' => 'bca', 'BcaB06g28949' => 'bca', 'BcaB07g29689' => 'bca', 'BcaC01g06927' => 'bca', 'BcaC02g07587' => 'bca', 'BcaC02g11769' => 'bca', 'BcaC03g14642' => 'bca', 'BcaC03g18208' => 'bca', 'BcaC04g23333' => 'bca', 'BcaC07g39658' => 'bca', 'BcaC08g44615' => 'bca', 'BolC2t08217H' => 'bol', 'BolC2t12346H' => 'bol', 'BolC3t18549H' => 'bol', 'BolC4t22807H' => 'bol', 'BolC4t28031H' => 'bol', 'BolC6t37274H' => 'bol', 'BolC8t50433H' => 'bol', 'BolC9t53849H' => 'bol', 'BraA02t06324Z' => 'bra', 'BraA02t09202Z' => 'bra', 'BraA04t18289Z' => 'bra', 'BraA05t19886Z' => 'bra', 'BraA06t25963Z' => 'bra', 'BraA07t29821Z' => 'bra', 'BraA09t36479Z' => 'bra', 'BraA09t40064Z' => 'bra', 'C02p20760' => 'bna', 'C02p62750' => 'bna', 'C03p62950' => 'bna', 'C04p11590' => 'bna', 'C04p65420' => 'bna', 'C06p20870' => 'bna', 'C08p28210' => 'bna', 'C09p09370' => 'bna', 'CAN.G1611.9' => 'can', 'CAN.G2.33' => 'can', 'CAN.G2.34' => 'can', 'CAN.G65.52' => 'can', 'CAN.G94.8' => 'can', 'CANSAT01G2139' => 'cansat', 'CANSAT80G1300' => 'cansat', 'CARHR130810' => 'chi', 'CARHR162830' => 'chi', 'CARHR257720' => 'chi', 'CARHR277340' => 'chi', 'Carub.0004s1832' => 'cru', 'Carub.0005s1943' => 'cru', 'Carub.0008s1064' => 'cru', 'Carub.0008s2419' => 'cru', 'Ca_16055_v3' => 'car', 'Ca_17003_v3' => 'car', 'Ca_17559_v3' => 'car', 'Ca_17608_v3' => 'car', 'Ca_30661_v3' => 'car', 'CBR_g40427' => 'cbr', 'Cc04_g10010' => 'ccan', 'Cc07_g19540' => 'ccan', 'CDE02G3776' => 'cde', 'CDE05G1880' => 'cde', 'CDE05G2144' => 'cde', 'CDE05G2627' => 'cde', 'Cfa002165' => 'cfa', 'Ciclev10000793m.g' => 'ccl', 'Ciclev10031167m.g' => 'ccl', 'CiPaw.03G115300' => 'cil', 'CiPaw.11G006000' => 'cil', 'CiPaw.12G044200' => 'cil', 'ClCG04G001750' => 'cla', 'ClCG06G017990' => 'cla', 'COL.COLO4_12115' => 'col', 'COL.COLO4_28145' => 'col', 'Cpa.g.c39311' => 'cpa', 'Cpa.g.sc13.98' => 'cpa', 'Cpa.g.sc37.40' => 'cpa', 'CsaV3_1G000480' => 'csa', 'CsaV3_4G030800' => 'csa', 'CSS0002692' => 'camsi', 'CSS0007571' => 'camsi', 'CSS0009668' => 'camsi', 'CSS0010143' => 'camsi', 'CSS0030126' => 'camsi', 'CSS0031225' => 'camsi', 'CSS0032112' => 'camsi', 'CSS0046540' => 'camsi', 'DCAR_007498' => 'dca', 'DCAR_019959' => 'dca', 'DCAR_021626' => 'dca', 'Dinv07261' => 'din', 'Dinv07460' => 'din', 'Dinv11185' => 'din', 'Dinv23161' => 'din', 'Duzib068G0263' => 'dzi', 'Duzib147G0677' => 'dzi', 'Duzib205G0934' => 'dzi', 'ECA232G4930' => 'eca', 'ECA233G3362' => 'eca', 'ECA246G0570' => 'eca', 'ECA247G2755' => 'eca', 'EL10Ac4g07714' => 'bvu', 'EL10Ac4g09663' => 'bvu', 'EL10Ac5g11397' => 'bvu', 'EL10Ac5g12267' => 'bvu', 'EL10Ac8g19613' => 'bvu', 'EL10Ac8g19826' => 'bvu', 'Eucgr.H05076' => 'egr', 'Eucgr.K02712' => 'egr', 'FAN04G1433' => 'fan', 'FAN08G0128' => 'fan', 'FAN13G0027' => 'fan', 'FAN18G0647' => 'fan', 'FAN19G0721' => 'fan', 'FAN23G1570' => 'fan', 'FAN26G1544' => 'fan', 'FAN28G1718' => 'fan', 'FvH4_1g25510' => 'fve', 'FvH4_5g08490' => 'fve', 'Glyma.04G196800' => 'gma', 'Glyma.04G207600' => 'gma', 'Glyma.05G195700' => 'gma', 'Glyma.05G204500' => 'gma', 'Glyma.06G158200' => 'gma', 'Glyma.06G169000' => 'gma', 'Glyma.08G003300' => 'gma', 'Glyma.08G011700' => 'gma', 'Gohir.A03G053000' => 'ghi', 'Gohir.A07G050400' => 'ghi', 'Gohir.A09G006300' => 'ghi', 'Gohir.A11G036700' => 'ghi', 'Gohir.A11G058100' => 'ghi', 'Gohir.D03G114100' => 'ghi', 'Gohir.D07G054900' => 'ghi', 'Gohir.D07G054933' => 'ghi', 'Gohir.D07G054966' => 'ghi', 'Gohir.D09G005400' => 'ghi', 'Gohir.D11G040000' => 'ghi', 'Gohir.D11G062300' => 'ghi', 'Gorai.001G058100' => 'gra', 'Gorai.003G120400' => 'gra', 'Gorai.006G007000' => 'gra', 'Gorai.007G043100' => 'gra', 'Gorai.007G067100' => 'gra', 'GSVIVG01008562001' => 'vvi', 'GSVIVG01022373001' => 'vvi', 'HanXRQChr04g0102961' => 'han', 'HanXRQChr05g0155121' => 'han', 'HanXRQChr06g0177011' => 'han', 'HanXRQChr08g0236831' => 'han', 'HanXRQChr09g0273341' => 'han', 'HanXRQChr12g0380471' => 'han', 'HanXRQChr16g0498061' => 'han', 'Haze_07154' => 'cav', 'Haze_25340' => 'cav', 'Hma1.2p1_0014F.1_g009290' => 'hma', 'Hma1.2p1_0957F.1_g241410' => 'hma', 'HPP92_004399' => 'vpl', 'HPP92_007007' => 'vpl', 'HPP92_007008' => 'vpl', 'HPP92_021564' => 'vpl', 'HPP92_021565' => 'vpl', 'HPP92_021600' => 'vpl', 'HPP92_025260' => 'vpl', 'HPP92_025274' => 'vpl', 'HPP92_027136' => 'vpl', 'HPP92_027805' => 'vpl', 'Hund02449' => 'sun', 'Hund07207' => 'sun', 'Hund07208' => 'sun', 'Hund07209' => 'sun', 'Hund10150' => 'sun', 'Hund21789' => 'sun', 'Lalb_Chr07g0183491' => 'lal', 'Lalb_Chr07g0184171' => 'lal', 'Lalb_Chr08g0237251' => 'lal', 'Lalb_Chr08g0237971' => 'lal', 'Lalb_Chr08g0237981' => 'lal', 'Lalb_Chr12g0202241' => 'lal', 'Lalb_Chr12g0202901' => 'lal', 'Lj1g0001167' => 'lja', 'Lj1g0025578' => 'lja', 'Lj2C608G4' => 'lonja', 'Lj4g0004546' => 'lja', 'Lj4g0017068' => 'lja', 'Lj5A95T76' => 'lonja', 'Lj9A480T83' => 'lonja', 'Lsat_1_v5_gn_1_33080' => 'lsa', 'Lsat_1_v5_gn_2_57801' => 'lsa', 'Lsat_1_v5_gn_4_165060' => 'lsa', 'Lsat_1_v5_gn_4_81321' => 'lsa', 'Lsat_1_v5_gn_5_11720' => 'lsa', 'Lsat_1_v5_gn_5_49701' => 'lsa', 'Lsat_1_v5_gn_5_69140' => 'lsa', 'Manes.06G120600' => 'mes', 'Manes.12G080101' => 'mes', 'Manes.14G050200' => 'mes', 'Mapoly0179s0023' => 'mpo', 'MBI11_g22678_MAGBIO' => 'mbi', 'MBI11_g41401_MAGBIO' => 'mbi', 'MBI16_g07663_MAGBIO' => 'mbi', 'MD05G1065700' => 'mdo', 'MD06G1140500' => 'mdo', 'MD08G1110100' => 'mdo', 'MD08G1219400' => 'mdo', 'MD14G1155700' => 'mdo', 'MD15G1408000' => 'mdo', 'Medtr3g097010' => 'mtr', 'Medtr3g099100' => 'mtr', 'Medtr7g114800' => 'mtr', 'Medtr8g044820' => 'mtr', 'Medtr8g094780' => 'mtr', 'Medtr8g096850' => 'mtr', 'MELO3C008947.2' => 'cme', 'MELO3C026200.2' => 'cme', 'Migut.D01272' => 'egut', 'Migut.H00837' => 'egut', 'Migut.H00846' => 'egut', 'Migut.I00538' => 'egut', 'MSTRG.23480' => 'ama', 'MSTRG.9331' => 'ama', 'Nitab4.5_0000432g0120' => 'nta', 'Nitab4.5_0000624g0120' => 'nta', 'Nitab4.5_0001311g0180' => 'nta', 'Nitab4.5_0001678g0070' => 'nta', 'Nitab4.5_0002028g0010' => 'nta', 'Nitab4.5_0003285g0050' => 'nta', 'Nitab4.5_0003948g0010' => 'nta', 'Nitab4.5_0004542g0030' => 'nta', 'Nn1g08797' => 'nnu', 'Nn3g16432' => 'nnu', 'Nn3g19431' => 'nnu', 'Nn4g24571' => 'nnu', 'Nn4g24572' => 'nnu', 'Nn5g28292' => 'nnu', 'Oeu004997.2' => 'oeu', 'Oeu029100.2' => 'oeu', 'Oeu042317.2' => 'oeu', 'Os01g0923300' => 'osa', 'Os01g0961200' => 'osa', 'Os11g0170300' => 'osa', 'Os11g0496400' => 'osa', 'Os12g0169400' => 'osa', 'Peaxi162Scf00089g00125' => 'pax', 'Peaxi162Scf00536g00516' => 'pax', 'Peaxi162Scf00763g00229' => 'pax', 'Peaxi162Scf01677g00006' => 'pax', 'PGR044G1660' => 'pgr', 'PGR083G0636' => 'pgr', 'PGR102G2822' => 'pgr', 'PGSC0003DMG400008480' => 'stu', 'PGSC0003DMG400015266' => 'stu', 'PGSC0003DMG400020525' => 'stu', 'PGSC0003DMG400034423' => 'stu', 'PGSC0003DMG402026974' => 'stu', 'Phvul.002G276200' => 'pvu', 'Phvul.002G286300' => 'pvu', 'Phvul.009G152100' => 'pvu', 'Phvul.009G165300' => 'pvu', 'Potri.005G070500' => 'ptr', 'Potri.007G098400' => 'ptr', 'Potri.012G099600' => 'ptr', 'Potri.015G098100' => 'ptr', 'Pp3c11_15160' => 'ppa', 'Pp3c1_14290' => 'ppa', 'Pp3c1_14310' => 'ppa', 'Pp3c2_26110' => 'ppa', 'Pp3c7_10070' => 'ppa', 'Prupe.1G553500' => 'ppe', 'Prupe.5G149700' => 'ppe', 'Psat5g052040' => 'psa', 'Psat5g058880' => 'psa', 'Psat7g036040' => 'psa', 'Psat7g043320' => 'psa', 'PSO017G0742' => 'pso', 'PSO017G3014' => 'pso', 'PSO478G2822' => 'pso', 'PSO478G3654' => 'pso', 'PSO528G0044' => 'pso', 'QL09p036442' => 'qlo', 'QL10p002635' => 'qlo', 'QL10p040171' => 'qlo', 'RcHm_v2.0_Chr2g0123641' => 'rch', 'RcHm_v2.0_Chr7g0189921' => 'rch', 'Rhsim08G0001800' => 'rsi', 'Rhsim08G0191300' => 'rsi', 'Rhsim12G0176100' => 'rsi', 'Sabra05G0057300' => 'sbr', 'Sabra07G0081800' => 'sbr', 'Sabra12G0072900' => 'sbr', 'Sabra15G0118700' => 'sbr', 'SalBow1G0068' => 'sbo', 'SalBow1G4612' => 'sbo', 'SalBow5G3778' => 'sbo', 'SalBow5G4742' => 'sbo', 'SalBow5G5176' => 'sbo', 'Sc04g0000540' => 'sci', 'Sc09g0002190' => 'sci', 'Sed0014432' => 'sed', 'Sed0016763' => 'sed', 'Sed0023597' => 'sed', 'SEGI_08213' => 'sgi', 'SEGI_12539' => 'sgi', 'SEGI_13889' => 'sgi', 'SEGI_34554' => 'sgi', 'SGA_v2.0_scaffold20G08971' => 'sas', 'SGA_v2.0_scaffold211G42166' => 'sas', 'SGA_v2.0_scaffold215G42347' => 'sas', 'SGA_v2.0_scaffold5G02861' => 'sas', 'SHI11435' => 'shi', 'SMO117G0006' => 'smo', 'SMO146G0075' => 'smo', 'SMO197G0110' => 'smo', 'Solyc03g019680.3' => 'sly', 'Solyc06g072050.4' => 'sly', 'Solyc12g032930.3' => 'sly', 'Solyc12g032950.3' => 'sly', 'Sopen03g029940' => 'spe', 'Sopen06g028340' => 'spe', 'Sopen12g013960' => 'spe', 'Sopen12g014050' => 'spe', 'Sp2g26570' => 'spa', 'Sp4g18810' => 'spa', 'Sp5g09380' => 'spa', 'Sp6g12710' => 'spa', 'TAR622G1057' => 'tar', 'TAR625G1285' => 'tar', 'TAR629G3085' => 'tar', 'THA.LOC104807206' => 'tha', 'THA.LOC104811582' => 'tha', 'THA.LOC104818181' => 'tha', 'THA.LOC104821523' => 'tha', 'THA.LOC104825021' => 'tha', 'Thecc.01G142100' => 'tca', 'Thecc.03G130700' => 'tca', 'Thhalv10003950m.g' => 'esa', 'Thhalv10010265m.g' => 'esa', 'Thhalv10013164m.g' => 'esa', 'Thhalv10016029m.g' => 'esa', 'Thhalv10016477m.g' => 'esa', 'TPR.G12801' => 'tpr', 'TPR.G37383' => 'tpr', 'TPR.G7877' => 'tpr', 'TWI31G0638' => 'twi', 'TWI39G1126' => 'twi', 'TWI75G1347' => 'twi', 'unitig_0.g1248' => 'ugi', 'unitig_27.g25093' => 'ugi', 'unitig_27.g25094' => 'ugi', 'unitig_46.g18653' => 'ugi', 'vmacro16728' => 'vma', 'vmacro18675' => 'vma', 'vmacro19122' => 'vma', 'VMungo0251G0294' => 'vmu', 'VMungo0251G2672' => 'vmu', 'VMungo0300G0001' => 'vmu', 'VMungo1309G0322' => 'vmu', 'VMungo1309G2575' => 'vmu', 'Zm00001eb028380' => 'zma', 'Zm00001eb091750' => 'zma', 'Zm00001eb143070' => 'zma', 'Zm00001eb169430' => 'zma', 'Zm00001eb180140' => 'zma', 'Zm00001eb200900' => 'zma', 'Zm00001eb364290' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001512' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001512' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001512' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001512' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001512', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '419', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p12690' => 'bna', 'A02p42760' => 'bna', 'A04p28020' => 'bna', 'A05p09290' => 'bna', 'A06p30120' => 'bna', 'A07p21340' => 'bna', 'A09p08290' => 'bna', 'A09p46020' => 'bna', 'Aa31LG10G8160' => 'aar', 'Aa31LG10G9440' => 'aar', 'Aa31LG1G18550' => 'aar', 'Aa31LG3G7010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.478' => 'aag', 'Actinidia01948' => 'ach', 'Actinidia03791' => 'ach', 'Actinidia08883' => 'ach', 'Actinidia16514' => 'ach', 'Actinidia25412' => 'ach', 'Actinidia36819' => 'ach', 'Ah.02g117690' => 'amhyb', 'Ah.06g188570' => 'amhyb', 'Ah.11g045480' => 'amhyb', 'AL4G32690' => 'aly', 'AL5G33740' => 'aly', 'AL8G24800' => 'aly', 'AL8G40550' => 'aly', 'Aqoxy2G02638' => 'aox', 'Aqoxy3G00665' => 'aox', 'Aqoxy5G03323' => 'aox', 'Aqoxy6G00219' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38E3HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7YN7DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS8SB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMD6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD6YD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q310BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ9QMJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V82Y8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5G5FZ' => 'arhy', 'AT2G36500' => 'ath', 'AT3G52950' => 'ath', 'AT5G50530' => 'ath', 'AT5G50640' => 'ath', 'AT5G63490' => 'ath', 'ATR0561G050' => 'atr', 'ATR0584G131' => 'atr', 'Atru.chr4.1114' => 'acertr', 'Atru.chr6.1814' => 'acertr', 'AUR62000555' => 'cqu', 'AUR62006907' => 'cqu', 'AUR62029590' => 'cqu', 'AUR62034845' => 'cqu', 'BcaB01g00325' => 'bca', 'BcaB02g09349' => 'bca', 'BcaB02g09757' => 'bca', 'BcaB04g19921' => 'bca', 'BcaB05g24041' => 'bca', 'BcaB06g28949' => 'bca', 'BcaB07g29689' => 'bca', 'BcaC01g06927' => 'bca', 'BcaC02g07587' => 'bca', 'BcaC02g11769' => 'bca', 'BcaC03g14642' => 'bca', 'BcaC03g18208' => 'bca', 'BcaC04g23333' => 'bca', 'BcaC07g39658' => 'bca', 'BcaC08g44615' => 'bca', 'BolC2t08217H' => 'bol', 'BolC2t12346H' => 'bol', 'BolC3t18549H' => 'bol', 'BolC4t22807H' => 'bol', 'BolC4t28031H' => 'bol', 'BolC6t37274H' => 'bol', 'BolC8t50433H' => 'bol', 'BolC9t53849H' => 'bol', 'BraA02t06324Z' => 'bra', 'BraA02t09202Z' => 'bra', 'BraA04t18289Z' => 'bra', 'BraA05t19886Z' => 'bra', 'BraA06t25963Z' => 'bra', 'BraA07t29821Z' => 'bra', 'BraA09t36479Z' => 'bra', 'BraA09t40064Z' => 'bra', 'C02p20760' => 'bna', 'C02p62750' => 'bna', 'C03p62950' => 'bna', 'C04p11590' => 'bna', 'C04p65420' => 'bna', 'C06p20870' => 'bna', 'C08p28210' => 'bna', 'C09p09370' => 'bna', 'CAN.G1611.9' => 'can', 'CAN.G2.33' => 'can', 'CAN.G2.34' => 'can', 'CAN.G65.52' => 'can', 'CAN.G94.8' => 'can', 'CANSAT01G2139' => 'cansat', 'CANSAT80G1300' => 'cansat', 'CARHR130810' => 'chi', 'CARHR162830' => 'chi', 'CARHR257720' => 'chi', 'CARHR277340' => 'chi', 'Carub.0004s1832' => 'cru', 'Carub.0005s1943' => 'cru', 'Carub.0008s1064' => 'cru', 'Carub.0008s2419' => 'cru', 'Ca_16055_v3' => 'car', 'Ca_17003_v3' => 'car', 'Ca_17559_v3' => 'car', 'Ca_17608_v3' => 'car', 'Ca_30661_v3' => 'car', 'CBR_g40427' => 'cbr', 'Cc04_g10010' => 'ccan', 'Cc07_g19540' => 'ccan', 'CDE02G3776' => 'cde', 'CDE05G1880' => 'cde', 'CDE05G2144' => 'cde', 'CDE05G2627' => 'cde', 'Cfa002165' => 'cfa', 'Ciclev10000793m.g' => 'ccl', 'Ciclev10031167m.g' => 'ccl', 'CiPaw.03G115300' => 'cil', 'CiPaw.11G006000' => 'cil', 'CiPaw.12G044200' => 'cil', 'ClCG04G001750' => 'cla', 'ClCG06G017990' => 'cla', 'COL.COLO4_12115' => 'col', 'COL.COLO4_28145' => 'col', 'Cpa.g.c39311' => 'cpa', 'Cpa.g.sc13.98' => 'cpa', 'Cpa.g.sc37.40' => 'cpa', 'CsaV3_1G000480' => 'csa', 'CsaV3_4G030800' => 'csa', 'CSS0002692' => 'camsi', 'CSS0007571' => 'camsi', 'CSS0009668' => 'camsi', 'CSS0010143' => 'camsi', 'CSS0030126' => 'camsi', 'CSS0031225' => 'camsi', 'CSS0032112' => 'camsi', 'CSS0046540' => 'camsi', 'DCAR_007498' => 'dca', 'DCAR_019959' => 'dca', 'DCAR_021626' => 'dca', 'Dinv07261' => 'din', 'Dinv07460' => 'din', 'Dinv11185' => 'din', 'Dinv23161' => 'din', 'Duzib068G0263' => 'dzi', 'Duzib147G0677' => 'dzi', 'Duzib205G0934' => 'dzi', 'ECA232G4930' => 'eca', 'ECA233G3362' => 'eca', 'ECA246G0570' => 'eca', 'ECA247G2755' => 'eca', 'EL10Ac4g07714' => 'bvu', 'EL10Ac4g09663' => 'bvu', 'EL10Ac5g11397' => 'bvu', 'EL10Ac5g12267' => 'bvu', 'EL10Ac8g19613' => 'bvu', 'EL10Ac8g19826' => 'bvu', 'Eucgr.H05076' => 'egr', 'Eucgr.K02712' => 'egr', 'FAN04G1433' => 'fan', 'FAN08G0128' => 'fan', 'FAN13G0027' => 'fan', 'FAN18G0647' => 'fan', 'FAN19G0721' => 'fan', 'FAN23G1570' => 'fan', 'FAN26G1544' => 'fan', 'FAN28G1718' => 'fan', 'FvH4_1g25510' => 'fve', 'FvH4_5g08490' => 'fve', 'Glyma.04G196800' => 'gma', 'Glyma.04G207600' => 'gma', 'Glyma.05G195700' => 'gma', 'Glyma.05G204500' => 'gma', 'Glyma.06G158200' => 'gma', 'Glyma.06G169000' => 'gma', 'Glyma.08G003300' => 'gma', 'Glyma.08G011700' => 'gma', 'Gohir.A03G053000' => 'ghi', 'Gohir.A07G050400' => 'ghi', 'Gohir.A09G006300' => 'ghi', 'Gohir.A11G036700' => 'ghi', 'Gohir.A11G058100' => 'ghi', 'Gohir.D03G114100' => 'ghi', 'Gohir.D07G054900' => 'ghi', 'Gohir.D07G054933' => 'ghi', 'Gohir.D07G054966' => 'ghi', 'Gohir.D09G005400' => 'ghi', 'Gohir.D11G040000' => 'ghi', 'Gohir.D11G062300' => 'ghi', 'Gorai.001G058100' => 'gra', 'Gorai.003G120400' => 'gra', 'Gorai.006G007000' => 'gra', 'Gorai.007G043100' => 'gra', 'Gorai.007G067100' => 'gra', 'GSVIVG01008562001' => 'vvi', 'GSVIVG01022373001' => 'vvi', 'HanXRQChr04g0102961' => 'han', 'HanXRQChr05g0155121' => 'han', 'HanXRQChr06g0177011' => 'han', 'HanXRQChr08g0236831' => 'han', 'HanXRQChr09g0273341' => 'han', 'HanXRQChr12g0380471' => 'han', 'HanXRQChr16g0498061' => 'han', 'Haze_07154' => 'cav', 'Haze_25340' => 'cav', 'Hma1.2p1_0014F.1_g009290' => 'hma', 'Hma1.2p1_0957F.1_g241410' => 'hma', 'HPP92_004399' => 'vpl', 'HPP92_007007' => 'vpl', 'HPP92_007008' => 'vpl', 'HPP92_021564' => 'vpl', 'HPP92_021565' => 'vpl', 'HPP92_021600' => 'vpl', 'HPP92_025260' => 'vpl', 'HPP92_025274' => 'vpl', 'HPP92_027136' => 'vpl', 'HPP92_027805' => 'vpl', 'Hund02449' => 'sun', 'Hund07207' => 'sun', 'Hund07208' => 'sun', 'Hund07209' => 'sun', 'Hund10150' => 'sun', 'Hund21789' => 'sun', 'Lalb_Chr07g0183491' => 'lal', 'Lalb_Chr07g0184171' => 'lal', 'Lalb_Chr08g0237251' => 'lal', 'Lalb_Chr08g0237971' => 'lal', 'Lalb_Chr08g0237981' => 'lal', 'Lalb_Chr12g0202241' => 'lal', 'Lalb_Chr12g0202901' => 'lal', 'Lj1g0001167' => 'lja', 'Lj1g0025578' => 'lja', 'Lj2C608G4' => 'lonja', 'Lj4g0004546' => 'lja', 'Lj4g0017068' => 'lja', 'Lj5A95T76' => 'lonja', 'Lj9A480T83' => 'lonja', 'Lsat_1_v5_gn_1_33080' => 'lsa', 'Lsat_1_v5_gn_2_57801' => 'lsa', 'Lsat_1_v5_gn_4_165060' => 'lsa', 'Lsat_1_v5_gn_4_81321' => 'lsa', 'Lsat_1_v5_gn_5_11720' => 'lsa', 'Lsat_1_v5_gn_5_49701' => 'lsa', 'Lsat_1_v5_gn_5_69140' => 'lsa', 'Manes.06G120600' => 'mes', 'Manes.12G080101' => 'mes', 'Manes.14G050200' => 'mes', 'Mapoly0179s0023' => 'mpo', 'MBI11_g22678_MAGBIO' => 'mbi', 'MBI11_g41401_MAGBIO' => 'mbi', 'MBI16_g07663_MAGBIO' => 'mbi', 'MD05G1065700' => 'mdo', 'MD06G1140500' => 'mdo', 'MD08G1110100' => 'mdo', 'MD08G1219400' => 'mdo', 'MD14G1155700' => 'mdo', 'MD15G1408000' => 'mdo', 'Medtr3g097010' => 'mtr', 'Medtr3g099100' => 'mtr', 'Medtr7g114800' => 'mtr', 'Medtr8g044820' => 'mtr', 'Medtr8g094780' => 'mtr', 'Medtr8g096850' => 'mtr', 'MELO3C008947.2' => 'cme', 'MELO3C026200.2' => 'cme', 'Migut.D01272' => 'egut', 'Migut.H00837' => 'egut', 'Migut.H00846' => 'egut', 'Migut.I00538' => 'egut', 'MSTRG.23480' => 'ama', 'MSTRG.9331' => 'ama', 'Nitab4.5_0000432g0120' => 'nta', 'Nitab4.5_0000624g0120' => 'nta', 'Nitab4.5_0001311g0180' => 'nta', 'Nitab4.5_0001678g0070' => 'nta', 'Nitab4.5_0002028g0010' => 'nta', 'Nitab4.5_0003285g0050' => 'nta', 'Nitab4.5_0003948g0010' => 'nta', 'Nitab4.5_0004542g0030' => 'nta', 'Nn1g08797' => 'nnu', 'Nn3g16432' => 'nnu', 'Nn3g19431' => 'nnu', 'Nn4g24571' => 'nnu', 'Nn4g24572' => 'nnu', 'Nn5g28292' => 'nnu', 'Oeu004997.2' => 'oeu', 'Oeu029100.2' => 'oeu', 'Oeu042317.2' => 'oeu', 'Os01g0923300' => 'osa', 'Os01g0961200' => 'osa', 'Os11g0170300' => 'osa', 'Os11g0496400' => 'osa', 'Os12g0169400' => 'osa', 'Peaxi162Scf00089g00125' => 'pax', 'Peaxi162Scf00536g00516' => 'pax', 'Peaxi162Scf00763g00229' => 'pax', 'Peaxi162Scf01677g00006' => 'pax', 'PGR044G1660' => 'pgr', 'PGR083G0636' => 'pgr', 'PGR102G2822' => 'pgr', 'PGSC0003DMG400008480' => 'stu', 'PGSC0003DMG400015266' => 'stu', 'PGSC0003DMG400020525' => 'stu', 'PGSC0003DMG400034423' => 'stu', 'PGSC0003DMG402026974' => 'stu', 'Phvul.002G276200' => 'pvu', 'Phvul.002G286300' => 'pvu', 'Phvul.009G152100' => 'pvu', 'Phvul.009G165300' => 'pvu', 'Potri.005G070500' => 'ptr', 'Potri.007G098400' => 'ptr', 'Potri.012G099600' => 'ptr', 'Potri.015G098100' => 'ptr', 'Pp3c11_15160' => 'ppa', 'Pp3c1_14290' => 'ppa', 'Pp3c1_14310' => 'ppa', 'Pp3c2_26110' => 'ppa', 'Pp3c7_10070' => 'ppa', 'Prupe.1G553500' => 'ppe', 'Prupe.5G149700' => 'ppe', 'Psat5g052040' => 'psa', 'Psat5g058880' => 'psa', 'Psat7g036040' => 'psa', 'Psat7g043320' => 'psa', 'PSO017G0742' => 'pso', 'PSO017G3014' => 'pso', 'PSO478G2822' => 'pso', 'PSO478G3654' => 'pso', 'PSO528G0044' => 'pso', 'QL09p036442' => 'qlo', 'QL10p002635' => 'qlo', 'QL10p040171' => 'qlo', 'RcHm_v2.0_Chr2g0123641' => 'rch', 'RcHm_v2.0_Chr7g0189921' => 'rch', 'Rhsim08G0001800' => 'rsi', 'Rhsim08G0191300' => 'rsi', 'Rhsim12G0176100' => 'rsi', 'Sabra05G0057300' => 'sbr', 'Sabra07G0081800' => 'sbr', 'Sabra12G0072900' => 'sbr', 'Sabra15G0118700' => 'sbr', 'SalBow1G0068' => 'sbo', 'SalBow1G4612' => 'sbo', 'SalBow5G3778' => 'sbo', 'SalBow5G4742' => 'sbo', 'SalBow5G5176' => 'sbo', 'Sc04g0000540' => 'sci', 'Sc09g0002190' => 'sci', 'Sed0014432' => 'sed', 'Sed0016763' => 'sed', 'Sed0023597' => 'sed', 'SEGI_08213' => 'sgi', 'SEGI_12539' => 'sgi', 'SEGI_13889' => 'sgi', 'SEGI_34554' => 'sgi', 'SGA_v2.0_scaffold20G08971' => 'sas', 'SGA_v2.0_scaffold211G42166' => 'sas', 'SGA_v2.0_scaffold215G42347' => 'sas', 'SGA_v2.0_scaffold5G02861' => 'sas', 'SHI11435' => 'shi', 'SMO117G0006' => 'smo', 'SMO146G0075' => 'smo', 'SMO197G0110' => 'smo', 'Solyc03g019680.3' => 'sly', 'Solyc06g072050.4' => 'sly', 'Solyc12g032930.3' => 'sly', 'Solyc12g032950.3' => 'sly', 'Sopen03g029940' => 'spe', 'Sopen06g028340' => 'spe', 'Sopen12g013960' => 'spe', 'Sopen12g014050' => 'spe', 'Sp2g26570' => 'spa', 'Sp4g18810' => 'spa', 'Sp5g09380' => 'spa', 'Sp6g12710' => 'spa', 'TAR622G1057' => 'tar', 'TAR625G1285' => 'tar', 'TAR629G3085' => 'tar', 'THA.LOC104807206' => 'tha', 'THA.LOC104811582' => 'tha', 'THA.LOC104818181' => 'tha', 'THA.LOC104821523' => 'tha', 'THA.LOC104825021' => 'tha', 'Thecc.01G142100' => 'tca', 'Thecc.03G130700' => 'tca', 'Thhalv10003950m.g' => 'esa', 'Thhalv10010265m.g' => 'esa', 'Thhalv10013164m.g' => 'esa', 'Thhalv10016029m.g' => 'esa', 'Thhalv10016477m.g' => 'esa', 'TPR.G12801' => 'tpr', 'TPR.G37383' => 'tpr', 'TPR.G7877' => 'tpr', 'TWI31G0638' => 'twi', 'TWI39G1126' => 'twi', 'TWI75G1347' => 'twi', 'unitig_0.g1248' => 'ugi', 'unitig_27.g25093' => 'ugi', 'unitig_27.g25094' => 'ugi', 'unitig_46.g18653' => 'ugi', 'vmacro16728' => 'vma', 'vmacro18675' => 'vma', 'vmacro19122' => 'vma', 'VMungo0251G0294' => 'vmu', 'VMungo0251G2672' => 'vmu', 'VMungo0300G0001' => 'vmu', 'VMungo1309G0322' => 'vmu', 'VMungo1309G2575' => 'vmu', 'Zm00001eb028380' => 'zma', 'Zm00001eb091750' => 'zma', 'Zm00001eb143070' => 'zma', 'Zm00001eb169430' => 'zma', 'Zm00001eb180140' => 'zma', 'Zm00001eb200900' => 'zma', 'Zm00001eb364290' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001512', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001512' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001512', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '419', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001512' ) ), 'genes' => array( 'A02p12690' => 'bna', 'A02p42760' => 'bna', 'A04p28020' => 'bna', 'A05p09290' => 'bna', 'A06p30120' => 'bna', 'A07p21340' => 'bna', 'A09p08290' => 'bna', 'A09p46020' => 'bna', 'Aa31LG10G8160' => 'aar', 'Aa31LG10G9440' => 'aar', 'Aa31LG1G18550' => 'aar', 'Aa31LG3G7010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.478' => 'aag', 'Actinidia01948' => 'ach', 'Actinidia03791' => 'ach', 'Actinidia08883' => 'ach', 'Actinidia16514' => 'ach', 'Actinidia25412' => 'ach', 'Actinidia36819' => 'ach', 'Ah.02g117690' => 'amhyb', 'Ah.06g188570' => 'amhyb', 'Ah.11g045480' => 'amhyb', 'AL4G32690' => 'aly', 'AL5G33740' => 'aly', 'AL8G24800' => 'aly', 'AL8G40550' => 'aly', 'Aqoxy2G02638' => 'aox', 'Aqoxy3G00665' => 'aox', 'Aqoxy5G03323' => 'aox', 'Aqoxy6G00219' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38E3HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7YN7DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS8SB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMD6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD6YD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q310BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ9QMJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V82Y8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5G5FZ' => 'arhy', 'AT2G36500' => 'ath', 'AT3G52950' => 'ath', 'AT5G50530' => 'ath', 'AT5G50640' => 'ath', 'AT5G63490' => 'ath', 'ATR0561G050' => 'atr', 'ATR0584G131' => 'atr', 'Atru.chr4.1114' => 'acertr', 'Atru.chr6.1814' => 'acertr', 'AUR62000555' => 'cqu', 'AUR62006907' => 'cqu', 'AUR62029590' => 'cqu', 'AUR62034845' => 'cqu', 'BcaB01g00325' => 'bca', 'BcaB02g09349' => 'bca', 'BcaB02g09757' => 'bca', 'BcaB04g19921' => 'bca', 'BcaB05g24041' => 'bca', 'BcaB06g28949' => 'bca', 'BcaB07g29689' => 'bca', 'BcaC01g06927' => 'bca', 'BcaC02g07587' => 'bca', 'BcaC02g11769' => 'bca', 'BcaC03g14642' => 'bca', 'BcaC03g18208' => 'bca', 'BcaC04g23333' => 'bca', 'BcaC07g39658' => 'bca', 'BcaC08g44615' => 'bca', 'BolC2t08217H' => 'bol', 'BolC2t12346H' => 'bol', 'BolC3t18549H' => 'bol', 'BolC4t22807H' => 'bol', 'BolC4t28031H' => 'bol', 'BolC6t37274H' => 'bol', 'BolC8t50433H' => 'bol', 'BolC9t53849H' => 'bol', 'BraA02t06324Z' => 'bra', 'BraA02t09202Z' => 'bra', 'BraA04t18289Z' => 'bra', 'BraA05t19886Z' => 'bra', 'BraA06t25963Z' => 'bra', 'BraA07t29821Z' => 'bra', 'BraA09t36479Z' => 'bra', 'BraA09t40064Z' => 'bra', 'C02p20760' => 'bna', 'C02p62750' => 'bna', 'C03p62950' => 'bna', 'C04p11590' => 'bna', 'C04p65420' => 'bna', 'C06p20870' => 'bna', 'C08p28210' => 'bna', 'C09p09370' => 'bna', 'CAN.G1611.9' => 'can', 'CAN.G2.33' => 'can', 'CAN.G2.34' => 'can', 'CAN.G65.52' => 'can', 'CAN.G94.8' => 'can', 'CANSAT01G2139' => 'cansat', 'CANSAT80G1300' => 'cansat', 'CARHR130810' => 'chi', 'CARHR162830' => 'chi', 'CARHR257720' => 'chi', 'CARHR277340' => 'chi', 'Carub.0004s1832' => 'cru', 'Carub.0005s1943' => 'cru', 'Carub.0008s1064' => 'cru', 'Carub.0008s2419' => 'cru', 'Ca_16055_v3' => 'car', 'Ca_17003_v3' => 'car', 'Ca_17559_v3' => 'car', 'Ca_17608_v3' => 'car', 'Ca_30661_v3' => 'car', 'CBR_g40427' => 'cbr', 'Cc04_g10010' => 'ccan', 'Cc07_g19540' => 'ccan', 'CDE02G3776' => 'cde', 'CDE05G1880' => 'cde', 'CDE05G2144' => 'cde', 'CDE05G2627' => 'cde', 'Cfa002165' => 'cfa', 'Ciclev10000793m.g' => 'ccl', 'Ciclev10031167m.g' => 'ccl', 'CiPaw.03G115300' => 'cil', 'CiPaw.11G006000' => 'cil', 'CiPaw.12G044200' => 'cil', 'ClCG04G001750' => 'cla', 'ClCG06G017990' => 'cla', 'COL.COLO4_12115' => 'col', 'COL.COLO4_28145' => 'col', 'Cpa.g.c39311' => 'cpa', 'Cpa.g.sc13.98' => 'cpa', 'Cpa.g.sc37.40' => 'cpa', 'CsaV3_1G000480' => 'csa', 'CsaV3_4G030800' => 'csa', 'CSS0002692' => 'camsi', 'CSS0007571' => 'camsi', 'CSS0009668' => 'camsi', 'CSS0010143' => 'camsi', 'CSS0030126' => 'camsi', 'CSS0031225' => 'camsi', 'CSS0032112' => 'camsi', 'CSS0046540' => 'camsi', 'DCAR_007498' => 'dca', 'DCAR_019959' => 'dca', 'DCAR_021626' => 'dca', 'Dinv07261' => 'din', 'Dinv07460' => 'din', 'Dinv11185' => 'din', 'Dinv23161' => 'din', 'Duzib068G0263' => 'dzi', 'Duzib147G0677' => 'dzi', 'Duzib205G0934' => 'dzi', 'ECA232G4930' => 'eca', 'ECA233G3362' => 'eca', 'ECA246G0570' => 'eca', 'ECA247G2755' => 'eca', 'EL10Ac4g07714' => 'bvu', 'EL10Ac4g09663' => 'bvu', 'EL10Ac5g11397' => 'bvu', 'EL10Ac5g12267' => 'bvu', 'EL10Ac8g19613' => 'bvu', 'EL10Ac8g19826' => 'bvu', 'Eucgr.H05076' => 'egr', 'Eucgr.K02712' => 'egr', 'FAN04G1433' => 'fan', 'FAN08G0128' => 'fan', 'FAN13G0027' => 'fan', 'FAN18G0647' => 'fan', 'FAN19G0721' => 'fan', 'FAN23G1570' => 'fan', 'FAN26G1544' => 'fan', 'FAN28G1718' => 'fan', 'FvH4_1g25510' => 'fve', 'FvH4_5g08490' => 'fve', 'Glyma.04G196800' => 'gma', 'Glyma.04G207600' => 'gma', 'Glyma.05G195700' => 'gma', 'Glyma.05G204500' => 'gma', 'Glyma.06G158200' => 'gma', 'Glyma.06G169000' => 'gma', 'Glyma.08G003300' => 'gma', 'Glyma.08G011700' => 'gma', 'Gohir.A03G053000' => 'ghi', 'Gohir.A07G050400' => 'ghi', 'Gohir.A09G006300' => 'ghi', 'Gohir.A11G036700' => 'ghi', 'Gohir.A11G058100' => 'ghi', 'Gohir.D03G114100' => 'ghi', 'Gohir.D07G054900' => 'ghi', 'Gohir.D07G054933' => 'ghi', 'Gohir.D07G054966' => 'ghi', 'Gohir.D09G005400' => 'ghi', 'Gohir.D11G040000' => 'ghi', 'Gohir.D11G062300' => 'ghi', 'Gorai.001G058100' => 'gra', 'Gorai.003G120400' => 'gra', 'Gorai.006G007000' => 'gra', 'Gorai.007G043100' => 'gra', 'Gorai.007G067100' => 'gra', 'GSVIVG01008562001' => 'vvi', 'GSVIVG01022373001' => 'vvi', 'HanXRQChr04g0102961' => 'han', 'HanXRQChr05g0155121' => 'han', 'HanXRQChr06g0177011' => 'han', 'HanXRQChr08g0236831' => 'han', 'HanXRQChr09g0273341' => 'han', 'HanXRQChr12g0380471' => 'han', 'HanXRQChr16g0498061' => 'han', 'Haze_07154' => 'cav', 'Haze_25340' => 'cav', 'Hma1.2p1_0014F.1_g009290' => 'hma', 'Hma1.2p1_0957F.1_g241410' => 'hma', 'HPP92_004399' => 'vpl', 'HPP92_007007' => 'vpl', 'HPP92_007008' => 'vpl', 'HPP92_021564' => 'vpl', 'HPP92_021565' => 'vpl', 'HPP92_021600' => 'vpl', 'HPP92_025260' => 'vpl', 'HPP92_025274' => 'vpl', 'HPP92_027136' => 'vpl', 'HPP92_027805' => 'vpl', 'Hund02449' => 'sun', 'Hund07207' => 'sun', 'Hund07208' => 'sun', 'Hund07209' => 'sun', 'Hund10150' => 'sun', 'Hund21789' => 'sun', 'Lalb_Chr07g0183491' => 'lal', 'Lalb_Chr07g0184171' => 'lal', 'Lalb_Chr08g0237251' => 'lal', 'Lalb_Chr08g0237971' => 'lal', 'Lalb_Chr08g0237981' => 'lal', 'Lalb_Chr12g0202241' => 'lal', 'Lalb_Chr12g0202901' => 'lal', 'Lj1g0001167' => 'lja', 'Lj1g0025578' => 'lja', 'Lj2C608G4' => 'lonja', 'Lj4g0004546' => 'lja', 'Lj4g0017068' => 'lja', 'Lj5A95T76' => 'lonja', 'Lj9A480T83' => 'lonja', 'Lsat_1_v5_gn_1_33080' => 'lsa', 'Lsat_1_v5_gn_2_57801' => 'lsa', 'Lsat_1_v5_gn_4_165060' => 'lsa', 'Lsat_1_v5_gn_4_81321' => 'lsa', 'Lsat_1_v5_gn_5_11720' => 'lsa', 'Lsat_1_v5_gn_5_49701' => 'lsa', 'Lsat_1_v5_gn_5_69140' => 'lsa', 'Manes.06G120600' => 'mes', 'Manes.12G080101' => 'mes', 'Manes.14G050200' => 'mes', 'Mapoly0179s0023' => 'mpo', 'MBI11_g22678_MAGBIO' => 'mbi', 'MBI11_g41401_MAGBIO' => 'mbi', 'MBI16_g07663_MAGBIO' => 'mbi', 'MD05G1065700' => 'mdo', 'MD06G1140500' => 'mdo', 'MD08G1110100' => 'mdo', 'MD08G1219400' => 'mdo', 'MD14G1155700' => 'mdo', 'MD15G1408000' => 'mdo', 'Medtr3g097010' => 'mtr', 'Medtr3g099100' => 'mtr', 'Medtr7g114800' => 'mtr', 'Medtr8g044820' => 'mtr', 'Medtr8g094780' => 'mtr', 'Medtr8g096850' => 'mtr', 'MELO3C008947.2' => 'cme', 'MELO3C026200.2' => 'cme', 'Migut.D01272' => 'egut', 'Migut.H00837' => 'egut', 'Migut.H00846' => 'egut', 'Migut.I00538' => 'egut', 'MSTRG.23480' => 'ama', 'MSTRG.9331' => 'ama', 'Nitab4.5_0000432g0120' => 'nta', 'Nitab4.5_0000624g0120' => 'nta', 'Nitab4.5_0001311g0180' => 'nta', 'Nitab4.5_0001678g0070' => 'nta', 'Nitab4.5_0002028g0010' => 'nta', 'Nitab4.5_0003285g0050' => 'nta', 'Nitab4.5_0003948g0010' => 'nta', 'Nitab4.5_0004542g0030' => 'nta', 'Nn1g08797' => 'nnu', 'Nn3g16432' => 'nnu', 'Nn3g19431' => 'nnu', 'Nn4g24571' => 'nnu', 'Nn4g24572' => 'nnu', 'Nn5g28292' => 'nnu', 'Oeu004997.2' => 'oeu', 'Oeu029100.2' => 'oeu', 'Oeu042317.2' => 'oeu', 'Os01g0923300' => 'osa', 'Os01g0961200' => 'osa', 'Os11g0170300' => 'osa', 'Os11g0496400' => 'osa', 'Os12g0169400' => 'osa', 'Peaxi162Scf00089g00125' => 'pax', 'Peaxi162Scf00536g00516' => 'pax', 'Peaxi162Scf00763g00229' => 'pax', 'Peaxi162Scf01677g00006' => 'pax', 'PGR044G1660' => 'pgr', 'PGR083G0636' => 'pgr', 'PGR102G2822' => 'pgr', 'PGSC0003DMG400008480' => 'stu', 'PGSC0003DMG400015266' => 'stu', 'PGSC0003DMG400020525' => 'stu', 'PGSC0003DMG400034423' => 'stu', 'PGSC0003DMG402026974' => 'stu', 'Phvul.002G276200' => 'pvu', 'Phvul.002G286300' => 'pvu', 'Phvul.009G152100' => 'pvu', 'Phvul.009G165300' => 'pvu', 'Potri.005G070500' => 'ptr', 'Potri.007G098400' => 'ptr', 'Potri.012G099600' => 'ptr', 'Potri.015G098100' => 'ptr', 'Pp3c11_15160' => 'ppa', 'Pp3c1_14290' => 'ppa', 'Pp3c1_14310' => 'ppa', 'Pp3c2_26110' => 'ppa', 'Pp3c7_10070' => 'ppa', 'Prupe.1G553500' => 'ppe', 'Prupe.5G149700' => 'ppe', 'Psat5g052040' => 'psa', 'Psat5g058880' => 'psa', 'Psat7g036040' => 'psa', 'Psat7g043320' => 'psa', 'PSO017G0742' => 'pso', 'PSO017G3014' => 'pso', 'PSO478G2822' => 'pso', 'PSO478G3654' => 'pso', 'PSO528G0044' => 'pso', 'QL09p036442' => 'qlo', 'QL10p002635' => 'qlo', 'QL10p040171' => 'qlo', 'RcHm_v2.0_Chr2g0123641' => 'rch', 'RcHm_v2.0_Chr7g0189921' => 'rch', 'Rhsim08G0001800' => 'rsi', 'Rhsim08G0191300' => 'rsi', 'Rhsim12G0176100' => 'rsi', 'Sabra05G0057300' => 'sbr', 'Sabra07G0081800' => 'sbr', 'Sabra12G0072900' => 'sbr', 'Sabra15G0118700' => 'sbr', 'SalBow1G0068' => 'sbo', 'SalBow1G4612' => 'sbo', 'SalBow5G3778' => 'sbo', 'SalBow5G4742' => 'sbo', 'SalBow5G5176' => 'sbo', 'Sc04g0000540' => 'sci', 'Sc09g0002190' => 'sci', 'Sed0014432' => 'sed', 'Sed0016763' => 'sed', 'Sed0023597' => 'sed', 'SEGI_08213' => 'sgi', 'SEGI_12539' => 'sgi', 'SEGI_13889' => 'sgi', 'SEGI_34554' => 'sgi', 'SGA_v2.0_scaffold20G08971' => 'sas', 'SGA_v2.0_scaffold211G42166' => 'sas', 'SGA_v2.0_scaffold215G42347' => 'sas', 'SGA_v2.0_scaffold5G02861' => 'sas', 'SHI11435' => 'shi', 'SMO117G0006' => 'smo', 'SMO146G0075' => 'smo', 'SMO197G0110' => 'smo', 'Solyc03g019680.3' => 'sly', 'Solyc06g072050.4' => 'sly', 'Solyc12g032930.3' => 'sly', 'Solyc12g032950.3' => 'sly', 'Sopen03g029940' => 'spe', 'Sopen06g028340' => 'spe', 'Sopen12g013960' => 'spe', 'Sopen12g014050' => 'spe', 'Sp2g26570' => 'spa', 'Sp4g18810' => 'spa', 'Sp5g09380' => 'spa', 'Sp6g12710' => 'spa', 'TAR622G1057' => 'tar', 'TAR625G1285' => 'tar', 'TAR629G3085' => 'tar', 'THA.LOC104807206' => 'tha', 'THA.LOC104811582' => 'tha', 'THA.LOC104818181' => 'tha', 'THA.LOC104821523' => 'tha', 'THA.LOC104825021' => 'tha', 'Thecc.01G142100' => 'tca', 'Thecc.03G130700' => 'tca', 'Thhalv10003950m.g' => 'esa', 'Thhalv10010265m.g' => 'esa', 'Thhalv10013164m.g' => 'esa', 'Thhalv10016029m.g' => 'esa', 'Thhalv10016477m.g' => 'esa', 'TPR.G12801' => 'tpr', 'TPR.G37383' => 'tpr', 'TPR.G7877' => 'tpr', 'TWI31G0638' => 'twi', 'TWI39G1126' => 'twi', 'TWI75G1347' => 'twi', 'unitig_0.g1248' => 'ugi', 'unitig_27.g25093' => 'ugi', 'unitig_27.g25094' => 'ugi', 'unitig_46.g18653' => 'ugi', 'vmacro16728' => 'vma', 'vmacro18675' => 'vma', 'vmacro19122' => 'vma', 'VMungo0251G0294' => 'vmu', 'VMungo0251G2672' => 'vmu', 'VMungo0300G0001' => 'vmu', 'VMungo1309G0322' => 'vmu', 'VMungo1309G2575' => 'vmu', 'Zm00001eb028380' => 'zma', 'Zm00001eb091750' => 'zma', 'Zm00001eb143070' => 'zma', 'Zm00001eb169430' => 'zma', 'Zm00001eb180140' => 'zma', 'Zm00001eb200900' => 'zma', 'Zm00001eb364290' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001512' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001512' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001512' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001512' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151