Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p12690 Brassica napus
A02p42760 Brassica napus
A04p28020 Brassica napus
A05p09290 Brassica napus
A06p30120 Brassica napus
A07p21340 Brassica napus
A09p08290 Brassica napus
A09p46020 Brassica napus
Aa31LG10G8160 Aethionema arabicum
Aa31LG10G9440 Aethionema arabicum
Aa31LG1G18550 Aethionema arabicum
Aa31LG3G7010 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.478 Anthoceros agrestis
Actinidia01948 Actinidia chinensis
Actinidia03791 Actinidia chinensis
Actinidia08883 Actinidia chinensis
Actinidia16514 Actinidia chinensis
Actinidia25412 Actinidia chinensis
Actinidia36819 Actinidia chinensis
Ah.02g117690 Amaranthus hybridus
Ah.06g188570 Amaranthus hybridus
Ah.11g045480 Amaranthus hybridus
AL4G32690 Arabidopsis lyrata
AL5G33740 Arabidopsis lyrata
AL8G24800 Arabidopsis lyrata
AL8G40550 Arabidopsis lyrata
Aqoxy2G02638 Aquilegia oxysepala
Aqoxy3G00665 Aquilegia oxysepala
Aqoxy5G03323 Aquilegia oxysepala
Aqoxy6G00219 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.38E3HW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7YN7DY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DS8SB8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GMD6VS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PD6YD2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q310BI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SJ9QMJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V82Y8W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y5G5FZ Arachis hypogaea
AT2G36500 Arabidopsis thaliana
AT3G52950 Arabidopsis thaliana
AT5G50530 Arabidopsis thaliana
AT5G50640 Arabidopsis thaliana
AT5G63490 Arabidopsis thaliana
ATR0561G050 Amborella trichopoda
ATR0584G131 Amborella trichopoda
Atru.chr4.1114 Acer truncatum
Atru.chr6.1814 Acer truncatum
AUR62000555 Chenopodium quinoa
AUR62006907 Chenopodium quinoa
AUR62029590 Chenopodium quinoa
AUR62034845 Chenopodium quinoa
BcaB01g00325 Brassica carinata
BcaB02g09349 Brassica carinata
BcaB02g09757 Brassica carinata
BcaB04g19921 Brassica carinata
BcaB05g24041 Brassica carinata
BcaB06g28949 Brassica carinata
BcaB07g29689 Brassica carinata
BcaC01g06927 Brassica carinata
BcaC02g07587 Brassica carinata
BcaC02g11769 Brassica carinata
BcaC03g14642 Brassica carinata
BcaC03g18208 Brassica carinata
BcaC04g23333 Brassica carinata
BcaC07g39658 Brassica carinata
BcaC08g44615 Brassica carinata
BolC2t08217H Brassica oleracea
BolC2t12346H Brassica oleracea
BolC3t18549H Brassica oleracea
BolC4t22807H Brassica oleracea
BolC4t28031H Brassica oleracea
BolC6t37274H Brassica oleracea
BolC8t50433H Brassica oleracea
BolC9t53849H Brassica oleracea
BraA02t06324Z Brassica rapa
BraA02t09202Z Brassica rapa
BraA04t18289Z Brassica rapa
BraA05t19886Z Brassica rapa
BraA06t25963Z Brassica rapa
BraA07t29821Z Brassica rapa
BraA09t36479Z Brassica rapa
BraA09t40064Z Brassica rapa
C02p20760 Brassica napus
C02p62750 Brassica napus
C03p62950 Brassica napus
C04p11590 Brassica napus
C04p65420 Brassica napus
C06p20870 Brassica napus
C08p28210 Brassica napus
C09p09370 Brassica napus
CAN.G1611.9 Capsicum annuum
CAN.G2.33 Capsicum annuum
CAN.G2.34 Capsicum annuum
CAN.G65.52 Capsicum annuum
CAN.G94.8 Capsicum annuum
CANSAT01G2139 Cannabis sativa
CANSAT80G1300 Cannabis sativa
CARHR130810 Cardamine hirsuta
CARHR162830 Cardamine hirsuta
CARHR257720 Cardamine hirsuta
CARHR277340 Cardamine hirsuta
Carub.0004s1832 Capsella rubella
Carub.0005s1943 Capsella rubella
Carub.0008s1064 Capsella rubella
Carub.0008s2419 Capsella rubella
Ca_16055_v3 Cicer arietinum L.
Ca_17003_v3 Cicer arietinum L.
Ca_17559_v3 Cicer arietinum L.
Ca_17608_v3 Cicer arietinum L.
Ca_30661_v3 Cicer arietinum L.
CBR_g40427 Chara braunii
Cc04_g10010 Coffea canephora
Cc07_g19540 Coffea canephora
CDE02G3776 Ceratophyllum demersum
CDE05G1880 Ceratophyllum demersum
CDE05G2144 Ceratophyllum demersum
CDE05G2627 Ceratophyllum demersum
Cfa002165 Carpinus fangiana
Ciclev10000793m.g Citrus clementina
Ciclev10031167m.g Citrus clementina
CiPaw.03G115300 Carya illinoinensis
CiPaw.11G006000 Carya illinoinensis
CiPaw.12G044200 Carya illinoinensis
ClCG04G001750 Citrullus lanatus
ClCG06G017990 Citrullus lanatus
COL.COLO4_12115 Corchorus olitorius
COL.COLO4_28145 Corchorus olitorius
Cpa.g.c39311 Carica papaya
Cpa.g.sc13.98 Carica papaya
Cpa.g.sc37.40 Carica papaya
CsaV3_1G000480 Cucumis sativus L.
CsaV3_4G030800 Cucumis sativus L.
CSS0002692 Camellia sinensis var. sinensis
CSS0007571 Camellia sinensis var. sinensis
CSS0009668 Camellia sinensis var. sinensis
CSS0010143 Camellia sinensis var. sinensis
CSS0030126 Camellia sinensis var. sinensis
CSS0031225 Camellia sinensis var. sinensis
CSS0032112 Camellia sinensis var. sinensis
CSS0046540 Camellia sinensis var. sinensis
DCAR_007498 Daucus carota
DCAR_019959 Daucus carota
DCAR_021626 Daucus carota
Dinv07261 Davidia involucrata
Dinv07460 Davidia involucrata
Dinv11185 Davidia involucrata
Dinv23161 Davidia involucrata
Duzib068G0263 Durio zibethinus
Duzib147G0677 Durio zibethinus
Duzib205G0934 Durio zibethinus
ECA232G4930 Erigeron canadensis
ECA233G3362 Erigeron canadensis
ECA246G0570 Erigeron canadensis
ECA247G2755 Erigeron canadensis
EL10Ac4g07714 Beta vulgaris
EL10Ac4g09663 Beta vulgaris
EL10Ac5g11397 Beta vulgaris
EL10Ac5g12267 Beta vulgaris
EL10Ac8g19613 Beta vulgaris
EL10Ac8g19826 Beta vulgaris
Eucgr.H05076 Eucalyptus grandis
Eucgr.K02712 Eucalyptus grandis
FAN04G1433 Fragaria x ananassa
FAN08G0128 Fragaria x ananassa
FAN13G0027 Fragaria x ananassa
FAN18G0647 Fragaria x ananassa
FAN19G0721 Fragaria x ananassa
FAN23G1570 Fragaria x ananassa
FAN26G1544 Fragaria x ananassa
FAN28G1718 Fragaria x ananassa
FvH4_1g25510 Fragaria vesca
FvH4_5g08490 Fragaria vesca
Glyma.04G196800 Glycine max
Glyma.04G207600 Glycine max
Glyma.05G195700 Glycine max
Glyma.05G204500 Glycine max
Glyma.06G158200 Glycine max
Glyma.06G169000 Glycine max
Glyma.08G003300 Glycine max
Glyma.08G011700 Glycine max
Gohir.A03G053000 Gossypium hirsutum
Gohir.A07G050400 Gossypium hirsutum
Gohir.A09G006300 Gossypium hirsutum
Gohir.A11G036700 Gossypium hirsutum
Gohir.A11G058100 Gossypium hirsutum
Gohir.D03G114100 Gossypium hirsutum
Gohir.D07G054900 Gossypium hirsutum
Gohir.D07G054933 Gossypium hirsutum
Gohir.D07G054966 Gossypium hirsutum
Gohir.D09G005400 Gossypium hirsutum
Gohir.D11G040000 Gossypium hirsutum
Gohir.D11G062300 Gossypium hirsutum
Gorai.001G058100 Gossypium raimondii
Gorai.003G120400 Gossypium raimondii
Gorai.006G007000 Gossypium raimondii
Gorai.007G043100 Gossypium raimondii
Gorai.007G067100 Gossypium raimondii
GSVIVG01008562001 Vitis vinifera
GSVIVG01022373001 Vitis vinifera
HanXRQChr04g0102961 Helianthus annuus
HanXRQChr05g0155121 Helianthus annuus
HanXRQChr06g0177011 Helianthus annuus
HanXRQChr08g0236831 Helianthus annuus
HanXRQChr09g0273341 Helianthus annuus
HanXRQChr12g0380471 Helianthus annuus
HanXRQChr16g0498061 Helianthus annuus
Haze_07154 Corylus avellana
Haze_25340 Corylus avellana
Hma1.2p1_0014F.1_g009290 Hydrangea macrophylla
Hma1.2p1_0957F.1_g241410 Hydrangea macrophylla
HPP92_004399 Vanilla planifolia
HPP92_007007 Vanilla planifolia
HPP92_007008 Vanilla planifolia
HPP92_021564 Vanilla planifolia
HPP92_021565 Vanilla planifolia
HPP92_021600 Vanilla planifolia
HPP92_025260 Vanilla planifolia
HPP92_025274 Vanilla planifolia
HPP92_027136 Vanilla planifolia
HPP92_027805 Vanilla planifolia
Hund02449 Selenicereus undatus
Hund07207 Selenicereus undatus
Hund07208 Selenicereus undatus
Hund07209 Selenicereus undatus
Hund10150 Selenicereus undatus
Hund21789 Selenicereus undatus
Lalb_Chr07g0183491 Lupinus albus
Lalb_Chr07g0184171 Lupinus albus
Lalb_Chr08g0237251 Lupinus albus
Lalb_Chr08g0237971 Lupinus albus
Lalb_Chr08g0237981 Lupinus albus
Lalb_Chr12g0202241 Lupinus albus
Lalb_Chr12g0202901 Lupinus albus
Lj1g0001167 Lotus japonicus
Lj1g0025578 Lotus japonicus
Lj2C608G4 Lonicera japonica
Lj4g0004546 Lotus japonicus
Lj4g0017068 Lotus japonicus
Lj5A95T76 Lonicera japonica
Lj9A480T83 Lonicera japonica
Lsat_1_v5_gn_1_33080 Lactuca sativa
Lsat_1_v5_gn_2_57801 Lactuca sativa
Lsat_1_v5_gn_4_165060 Lactuca sativa
Lsat_1_v5_gn_4_81321 Lactuca sativa
Lsat_1_v5_gn_5_11720 Lactuca sativa
Lsat_1_v5_gn_5_49701 Lactuca sativa
Lsat_1_v5_gn_5_69140 Lactuca sativa
Manes.06G120600 Manihot esculenta
Manes.12G080101 Manihot esculenta
Manes.14G050200 Manihot esculenta
Mapoly0179s0023 Marchantia polymorpha
MBI11_g22678_MAGBIO Magnolia biondii
MBI11_g41401_MAGBIO Magnolia biondii
MBI16_g07663_MAGBIO Magnolia biondii
MD05G1065700 Malus domestica
MD06G1140500 Malus domestica
MD08G1110100 Malus domestica
MD08G1219400 Malus domestica
MD14G1155700 Malus domestica
MD15G1408000 Malus domestica
Medtr3g097010 Medicago truncatula
Medtr3g099100 Medicago truncatula
Medtr7g114800 Medicago truncatula
Medtr8g044820 Medicago truncatula
Medtr8g094780 Medicago truncatula
Medtr8g096850 Medicago truncatula
MELO3C008947.2 Cucumis melo
MELO3C026200.2 Cucumis melo
Migut.D01272 Erythranthe guttata
Migut.H00837 Erythranthe guttata
Migut.H00846 Erythranthe guttata
Migut.I00538 Erythranthe guttata
MSTRG.23480 Avicennia marina
MSTRG.9331 Avicennia marina
Nitab4.5_0000432g0120 Nicotiana tabacum
Nitab4.5_0000624g0120 Nicotiana tabacum
Nitab4.5_0001311g0180 Nicotiana tabacum
Nitab4.5_0001678g0070 Nicotiana tabacum
Nitab4.5_0002028g0010 Nicotiana tabacum
Nitab4.5_0003285g0050 Nicotiana tabacum
Nitab4.5_0003948g0010 Nicotiana tabacum
Nitab4.5_0004542g0030 Nicotiana tabacum
Nn1g08797 Nelumbo nucifera
Nn3g16432 Nelumbo nucifera
Nn3g19431 Nelumbo nucifera
Nn4g24571 Nelumbo nucifera
Nn4g24572 Nelumbo nucifera
Nn5g28292 Nelumbo nucifera
Oeu004997.2 Olea europaea
Oeu029100.2 Olea europaea
Oeu042317.2 Olea europaea
Os01g0923300 Oryza sativa ssp. japonica
Os01g0961200 Oryza sativa ssp. japonica
Os11g0170300 Oryza sativa ssp. japonica
Os11g0496400 Oryza sativa ssp. japonica
Os12g0169400 Oryza sativa ssp. japonica
Peaxi162Scf00089g00125 Petunia axillaris
Peaxi162Scf00536g00516 Petunia axillaris
Peaxi162Scf00763g00229 Petunia axillaris
Peaxi162Scf01677g00006 Petunia axillaris
PGR044G1660 Punica granatum
PGR083G0636 Punica granatum
PGR102G2822 Punica granatum
PGSC0003DMG400008480 Solanum tuberosum
PGSC0003DMG400015266 Solanum tuberosum
PGSC0003DMG400020525 Solanum tuberosum
PGSC0003DMG400034423 Solanum tuberosum
PGSC0003DMG402026974 Solanum tuberosum
Phvul.002G276200 Phaseolus vulgaris
Phvul.002G286300 Phaseolus vulgaris
Phvul.009G152100 Phaseolus vulgaris
Phvul.009G165300 Phaseolus vulgaris
Potri.005G070500 Populus trichocarpa
Potri.007G098400 Populus trichocarpa
Potri.012G099600 Populus trichocarpa
Potri.015G098100 Populus trichocarpa
Pp3c11_15160 Physcomitrium patens
Pp3c1_14290 Physcomitrium patens
Pp3c1_14310 Physcomitrium patens
Pp3c2_26110 Physcomitrium patens
Pp3c7_10070 Physcomitrium patens
Prupe.1G553500 Prunus persica
Prupe.5G149700 Prunus persica
Psat5g052040 Pisum sativum
Psat5g058880 Pisum sativum
Psat7g036040 Pisum sativum
Psat7g043320 Pisum sativum
PSO017G0742 Papaver somniferum
PSO017G3014 Papaver somniferum
PSO478G2822 Papaver somniferum
PSO478G3654 Papaver somniferum
PSO528G0044 Papaver somniferum
QL09p036442 Quercus lobata
QL10p002635 Quercus lobata
QL10p040171 Quercus lobata
RcHm_v2.0_Chr2g0123641 Rosa chinensis
RcHm_v2.0_Chr7g0189921 Rosa chinensis
Rhsim08G0001800 Rhododendron simsii
Rhsim08G0191300 Rhododendron simsii
Rhsim12G0176100 Rhododendron simsii
Sabra05G0057300 Salix brachista
Sabra07G0081800 Salix brachista
Sabra12G0072900 Salix brachista
Sabra15G0118700 Salix brachista
SalBow1G0068 Salvia bowleyana
SalBow1G4612 Salvia bowleyana
SalBow5G3778 Salvia bowleyana
SalBow5G4742 Salvia bowleyana
SalBow5G5176 Salvia bowleyana
Sc04g0000540 Simmondsia chinensis
Sc09g0002190 Simmondsia chinensis
Sed0014432 Sechium edule
Sed0016763 Sechium edule
Sed0023597 Sechium edule
SEGI_08213 Sequoiadendron giganteum
SEGI_12539 Sequoiadendron giganteum
SEGI_13889 Sequoiadendron giganteum
SEGI_34554 Sequoiadendron giganteum
SGA_v2.0_scaffold20G08971 Striga asiatica
SGA_v2.0_scaffold211G42166 Striga asiatica
SGA_v2.0_scaffold215G42347 Striga asiatica
SGA_v2.0_scaffold5G02861 Striga asiatica
SHI11435 Sapria himalayana
SMO117G0006 Selaginella moellendorffii
SMO146G0075 Selaginella moellendorffii
SMO197G0110 Selaginella moellendorffii
Solyc03g019680.3 Solanum lycopersicum
Solyc06g072050.4 Solanum lycopersicum
Solyc12g032930.3 Solanum lycopersicum
Solyc12g032950.3 Solanum lycopersicum
Sopen03g029940 Solanum pennellii
Sopen06g028340 Solanum pennellii
Sopen12g013960 Solanum pennellii
Sopen12g014050 Solanum pennellii
Sp2g26570 Schrenkiella parvula
Sp4g18810 Schrenkiella parvula
Sp5g09380 Schrenkiella parvula
Sp6g12710 Schrenkiella parvula
TAR622G1057 Trochodendron aralioides
TAR625G1285 Trochodendron aralioides
TAR629G3085 Trochodendron aralioides
THA.LOC104807206 Tarenaya hassleriana
THA.LOC104811582 Tarenaya hassleriana
THA.LOC104818181 Tarenaya hassleriana
THA.LOC104821523 Tarenaya hassleriana
THA.LOC104825021 Tarenaya hassleriana
Thecc.01G142100 Theobroma cacao
Thecc.03G130700 Theobroma cacao
Thhalv10003950m.g Eutrema salsugineum
Thhalv10010265m.g Eutrema salsugineum
Thhalv10013164m.g Eutrema salsugineum
Thhalv10016029m.g Eutrema salsugineum
Thhalv10016477m.g Eutrema salsugineum
TPR.G12801 Trifolium pratense
TPR.G37383 Trifolium pratense
TPR.G7877 Trifolium pratense
TWI31G0638 Tripterygium wilfordii
TWI39G1126 Tripterygium wilfordii
TWI75G1347 Tripterygium wilfordii
unitig_0.g1248 Utricularia gibba
unitig_27.g25093 Utricularia gibba
unitig_27.g25094 Utricularia gibba
unitig_46.g18653 Utricularia gibba
vmacro16728 Vaccinium macrocarpon
vmacro18675 Vaccinium macrocarpon
vmacro19122 Vaccinium macrocarpon
VMungo0251G0294 Vigna mungo
VMungo0251G2672 Vigna mungo
VMungo0300G0001 Vigna mungo
VMungo1309G0322 Vigna mungo
VMungo1309G2575 Vigna mungo
Zm00001eb028380 Zea mays
Zm00001eb091750 Zea mays
Zm00001eb143070 Zea mays
Zm00001eb169430 Zea mays
Zm00001eb180140 Zea mays
Zm00001eb200900 Zea mays
Zm00001eb364290 Zea mays

User provided reference genes

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