Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001488', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '426', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39640' => 'bna', 'A02p01350' => 'bna', 'A05p35430' => 'bna', 'A06p00470' => 'bna', 'A08p01130' => 'bna', 'A10p25720' => 'bna', 'Aa31LG10G1240' => 'aar', 'Aa31LG3G15180' => 'aar', 'Aa31LG4G13280' => 'aar', 'Aa31LG8G1180' => 'aar', 'Actinidia03307' => 'ach', 'Actinidia21787' => 'ach', 'Actinidia25699' => 'ach', 'Actinidia27576' => 'ach', 'Actinidia32178' => 'ach', 'Actinidia39685' => 'ach', 'Ah.08g216680' => 'amhyb', 'Ah.10g033990' => 'amhyb', 'AL1G62910' => 'aly', 'AL3G26180' => 'aly', 'AL5G21160' => 'aly', 'AL6G22840' => 'aly', 'Aqoxy1G01010' => 'aox', 'Aqoxy4G01396' => 'aox', 'Aqoxy7G01095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1030I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N5SZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62UK56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8XJ49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3VH7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HX0TR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S358VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVA0C2' => 'arhy', 'AT1G54200' => 'ath', 'AT3G13980' => 'ath', 'AT3G42800' => 'ath', 'AT5G12050' => 'ath', 'ATR0598G179' => 'atr', 'Atru.chr1.3909' => 'acertr', 'Atru.chr7.1663' => 'acertr', 'Atru.chr7.1866' => 'acertr', 'AUR62001497' => 'cqu', 'AUR62009095' => 'cqu', 'AUR62009873' => 'cqu', 'AUR62020576' => 'cqu', 'AUR62028996' => 'cqu', 'BcaB01g05432' => 'bca', 'BcaB04g17017' => 'bca', 'BcaB04g20965' => 'bca', 'BcaB06g25413' => 'bca', 'BcaB07g33247' => 'bca', 'BcaC01g01441' => 'bca', 'BcaC03g13409' => 'bca', 'BcaC05g29134' => 'bca', 'BcaC08g43599' => 'bca', 'BcaC09g48386' => 'bca', 'BcaNung02630' => 'bca', 'BolC1t05011H' => 'bol', 'BolC2t06503H' => 'bol', 'BolC3t13127H' => 'bol', 'BolC3t21524H' => 'bol', 'BolC5t34042H' => 'bol', 'BolC6t36070H' => 'bol', 'BolC9t59310H' => 'bol', 'BraA01t04005Z' => 'bra', 'BraA02t05114Z' => 'bra', 'BraA03t09876Z' => 'bra', 'BraA05t22353Z' => 'bra', 'BraA06t23261Z' => 'bra', 'BraA08t32167Z' => 'bra', 'BraA10t44637Z' => 'bra', 'C01p50620' => 'bna', 'C02p05590' => 'bna', 'C03p06200' => 'bna', 'C03p92070' => 'bna', 'C05p53720' => 'bna', 'C06p09970' => 'bna', 'C09p64790' => 'bna', 'CAN.G1387.3' => 'can', 'CAN.G1387.5' => 'can', 'CANSAT25G3298' => 'cansat', 'CANSAT56G0195' => 'cansat', 'CANSAT56G4431' => 'cansat', 'CARHR044570' => 'chi', 'CARHR088800' => 'chi', 'CARHR153760' => 'chi', 'CARHR201080' => 'chi', 'Carub.0001s4343' => 'cru', 'Carub.0003s1356' => 'cru', 'Carub.0005s0885' => 'cru', 'Carub.0006s1057' => 'cru', 'Ca_13105_v3' => 'car', 'Ca_15839_v3' => 'car', 'Cc04_g01440' => 'ccan', 'Cc06_g11890' => 'ccan', 'Cc08_g01330' => 'ccan', 'CDE05G0831' => 'cde', 'CDE05G3396' => 'cde', 'CDE10G0469' => 'cde', 'CDE11G0090' => 'cde', 'Cfa003031' => 'cfa', 'Cfa003543' => 'cfa', 'Cfa011880' => 'cfa', 'Cfa018007' => 'cfa', 'Ciclev10008257m.g' => 'ccl', 'Ciclev10008758m.g' => 'ccl', 'Ciclev10025682m.g' => 'ccl', 'CiPaw.01G220600' => 'cil', 'CiPaw.02G136700' => 'cil', 'CiPaw.03G210100' => 'cil', 'CiPaw.04G146700' => 'cil', 'CiPaw.10G053700' => 'cil', 'CiPaw.15G090100' => 'cil', 'ClCG05G015630' => 'cla', 'ClCG07G013990' => 'cla', 'ClCG08G009900' => 'cla', 'ClCG09G000910' => 'cla', 'COL.COLO4_18134' => 'col', 'COL.COLO4_21120' => 'col', 'COL.COLO4_30774' => 'col', 'Cpa.g.sc126.40' => 'cpa', 'Cpa.g.sc25.102' => 'cpa', 'Cpa.g.sc28.87' => 'cpa', 'CsaV3_3G043550' => 'csa', 'CsaV3_4G035960' => 'csa', 'CsaV3_6G032000' => 'csa', 'CsaV3_7G034550' => 'csa', 'CSS0004414' => 'camsi', 'CSS0039321' => 'camsi', 'DCAR_007642' => 'dca', 'DCAR_022698' => 'dca', 'DCAR_026410' => 'dca', 'DCAR_028288' => 'dca', 'Dinv04028' => 'din', 'Dinv04257' => 'din', 'Dinv10389' => 'din', 'Dinv25581' => 'din', 'Dinv37875' => 'din', 'Dinv41833' => 'din', 'Dinv42369' => 'din', 'Dinv44677' => 'din', 'Duzib150G0073' => 'dzi', 'Duzib150G1066' => 'dzi', 'Duzib160G0588' => 'dzi', 'Duzib168G0244' => 'dzi', 'Duzib168G1997' => 'dzi', 'Duzib187G1785' => 'dzi', 'Duzib187G1885' => 'dzi', 'Duzib192G0094' => 'dzi', 'Duzib235G0516' => 'dzi', 'ECA236G0014' => 'eca', 'ECA240G4202' => 'eca', 'ECA247G0079' => 'eca', 'EL10Ac2g03800' => 'bvu', 'EL10Ac7g16397' => 'bvu', 'EL10Ac8g19131' => 'bvu', 'Eucgr.C00707' => 'egr', 'Eucgr.C03147' => 'egr', 'Eucgr.F03172' => 'egr', 'Eucgr.J02829' => 'egr', 'FAN02G1354' => 'fan', 'FAN05G4431' => 'fan', 'FAN09G3059' => 'fan', 'FAN14G3952' => 'fan', 'FAN15G1669' => 'fan', 'FAN19G1765' => 'fan', 'FAN20G1484' => 'fan', 'FAN23G0146' => 'fan', 'FAN24G0924' => 'fan', 'FAN26G0348' => 'fan', 'FAN26G2822' => 'fan', 'FAN27G1098' => 'fan', 'FAN28G0322' => 'fan', 'FAN28G2908' => 'fan', 'FvH4_1g08230' => 'fve', 'FvH4_2g31260' => 'fve', 'FvH4_6g34500' => 'fve', 'Glyma.04G055100' => 'gma', 'Glyma.06G055200' => 'gma', 'Glyma.07G036700' => 'gma', 'Glyma.13G108300' => 'gma', 'Glyma.14G099400' => 'gma', 'Glyma.16G006100' => 'gma', 'Glyma.17G051100' => 'gma', 'Glyma.17G225300' => 'gma', 'Gohir.A05G039500' => 'ghi', 'Gohir.A05G137600' => 'ghi', 'Gohir.A05G406200' => 'ghi', 'Gohir.A06G075300' => 'ghi', 'Gohir.A06G083100' => 'ghi', 'Gohir.A07G020501' => 'ghi', 'Gohir.A10G052900' => 'ghi', 'Gohir.D04G009400' => 'ghi', 'Gohir.D05G041000' => 'ghi', 'Gohir.D05G139700' => 'ghi', 'Gohir.D06G074100' => 'ghi', 'Gohir.D06G083800' => 'ghi', 'Gohir.D07G020200' => 'ghi', 'Gohir.D10G054700' => 'ghi', 'Gorai.001G021000' => 'gra', 'Gorai.009G041500' => 'gra', 'Gorai.009G144000' => 'gra', 'Gorai.010G086600' => 'gra', 'Gorai.010G097300' => 'gra', 'Gorai.011G058200' => 'gra', 'Gorai.012G011300' => 'gra', 'GSVIVG01015116001' => 'vvi', 'GSVIVG01016780001' => 'vvi', 'HanXRQChr03g0069531' => 'han', 'HanXRQChr04g0094821' => 'han', 'HanXRQChr05g0139531' => 'han', 'HanXRQChr06g0182641' => 'han', 'HanXRQChr09g0276771' => 'han', 'HanXRQChr10g0312441' => 'han', 'HanXRQChr10g0319591' => 'han', 'HanXRQChr15g0497071' => 'han', 'HanXRQChr16g0532421' => 'han', 'Haze_16017' => 'cav', 'Haze_18123' => 'cav', 'Haze_25969' => 'cav', 'Hma1.2p1_0291F.1_g115200' => 'hma', 'Hma1.2p1_0732F.1_g209990' => 'hma', 'Hma1.2p1_0797F.1_g219410' => 'hma', 'HPP92_004377' => 'vpl', 'HPP92_007989' => 'vpl', 'HPP92_023459' => 'vpl', 'HPP92_023473' => 'vpl', 'Lalb_Chr04g0263371' => 'lal', 'Lalb_Chr07g0181051' => 'lal', 'Lalb_Chr08g0244861' => 'lal', 'Lalb_Chr11g0074331' => 'lal', 'Lalb_Chr13g0299551' => 'lal', 'Lalb_Chr14g0375531' => 'lal', 'Lalb_Chr24g0393631' => 'lal', 'Lalb_Chr25g0281171' => 'lal', 'Lj1g0010668' => 'lja', 'Lj3g0028193' => 'lja', 'Lj5C38T14' => 'lonja', 'Lj5g0009631' => 'lja', 'Lj6g0003493' => 'lja', 'Lj7C233T2' => 'lonja', 'Lj8C508T0' => 'lonja', 'Lj8C510T4' => 'lonja', 'Lj9P522T34' => 'lonja', 'Lsat_1_v5_gn_1_37441' => 'lsa', 'Lsat_1_v5_gn_4_93600' => 'lsa', 'Lsat_1_v5_gn_5_135800' => 'lsa', 'Lsat_1_v5_gn_5_141901' => 'lsa', 'Lsat_1_v5_gn_7_60060' => 'lsa', 'Lsat_1_v5_gn_8_99360' => 'lsa', 'Manes.03G038000' => 'mes', 'Manes.03G052400' => 'mes', 'Manes.04G143200' => 'mes', 'Manes.11G021800' => 'mes', 'Manes.16G084100' => 'mes', 'Manes.16G097700' => 'mes', 'MBI13_g11365_MAGBIO' => 'mbi', 'MBI19_g35474_MAGBIO' => 'mbi', 'MD02G1086600' => 'mdo', 'MD08G1069700' => 'mdo', 'MD09G1185600' => 'mdo', 'MD15G1052300' => 'mdo', 'MD15G1213800' => 'mdo', 'MD17G1170300' => 'mdo', 'Medtr1g015275' => 'mtr', 'Medtr3g104880' => 'mtr', 'Medtr4g125620' => 'mtr', 'Medtr8g019660' => 'mtr', 'MELO3C011481.2' => 'cme', 'MELO3C016903.2' => 'cme', 'MELO3C024362.2' => 'cme', 'MELO3C025811.2' => 'cme', 'Migut.A00091' => 'egut', 'Migut.E01574' => 'egut', 'Migut.I01063' => 'egut', 'Migut.J00952' => 'egut', 'Migut.L01544' => 'egut', 'MSTRG.10960' => 'ama', 'MSTRG.11640' => 'ama', 'MSTRG.14063' => 'ama', 'Nitab4.5_0000073g0010' => 'nta', 'Nitab4.5_0001866g0020' => 'nta', 'Nitab4.5_0002072g0060' => 'nta', 'Nitab4.5_0002842g0070' => 'nta', 'Nitab4.5_0002879g0080' => 'nta', 'Nitab4.5_0003670g0010' => 'nta', 'Nitab4.5_0004953g0060' => 'nta', 'Nitab4.5_0009588g0020' => 'nta', 'Nitab4.5_0010890g0020' => 'nta', 'Nn3g17646' => 'nnu', 'Nn6g35590' => 'nnu', 'Oeu002849.1' => 'oeu', 'Oeu003979.1' => 'oeu', 'Oeu007567.1' => 'oeu', 'Oeu010818.1' => 'oeu', 'Oeu022777.1' => 'oeu', 'Oeu027281.1' => 'oeu', 'Oeu027282.1' => 'oeu', 'Oeu029698.1' => 'oeu', 'Oeu049518.1' => 'oeu', 'Oeu051321.1' => 'oeu', 'Oeu058721.1' => 'oeu', 'Oeu063408.1' => 'oeu', 'Peaxi162Scf00038g01811' => 'pax', 'Peaxi162Scf00101g00121' => 'pax', 'Peaxi162Scf00219g00053' => 'pax', 'Peaxi162Scf00498g00065' => 'pax', 'Peaxi162Scf00809g00410' => 'pax', 'PGR031G1119' => 'pgr', 'PGR044G1728' => 'pgr', 'PGR102G0969' => 'pgr', 'PGR119G0990' => 'pgr', 'PGR142G0115' => 'pgr', 'PGSC0003DMG400002570' => 'stu', 'PGSC0003DMG400011607' => 'stu', 'PGSC0003DMG400011608' => 'stu', 'PGSC0003DMG400019573' => 'stu', 'PGSC0003DMG400021740' => 'stu', 'Phvul.001G039400' => 'pvu', 'Phvul.003G132800' => 'pvu', 'Phvul.009G081100' => 'pvu', 'Phvul.010G132500' => 'pvu', 'Potri.001G170500' => 'ptr', 'Potri.003G063400' => 'ptr', 'Potri.006G144700' => 'ptr', 'Potri.006G222700' => 'ptr', 'Potri.018G049900' => 'ptr', 'Potri.018G065000' => 'ptr', 'Prupe.1G406300' => 'ppe', 'Prupe.3G043400' => 'ppe', 'Prupe.7G203200' => 'ppe', 'Psat0s89g0040' => 'psa', 'Psat0s89g0080' => 'psa', 'Psat4g017040' => 'psa', 'Psat4g183280' => 'psa', 'Psat6g022320' => 'psa', 'PSO063G4179' => 'pso', 'PSO210G0965' => 'pso', 'PSO210G7252' => 'pso', 'PSO421G0310' => 'pso', 'QL02p000252' => 'qlo', 'QL02p061086' => 'qlo', 'QL05p008269' => 'qlo', 'RcHm_v2.0_Chr2g0094281' => 'rch', 'RcHm_v2.0_Chr2g0144811' => 'rch', 'RcHm_v2.0_Chr6g0311541' => 'rch', 'Rhsim05G0012700' => 'rsi', 'Rhsim08G0237500' => 'rsi', 'Sabra01G0140700' => 'sbr', 'Sabra01G0140800' => 'sbr', 'Sabra03G0037000' => 'sbr', 'Sabra06G0113200' => 'sbr', 'Sabra06G0114500' => 'sbr', 'Sabra06G0172100' => 'sbr', 'Sabra18G0046900' => 'sbr', 'Sabra18G0057600' => 'sbr', 'SalBow4G1810' => 'sbo', 'SalBow6G0975' => 'sbo', 'SalBow6G6945' => 'sbo', 'SalBow7G2112' => 'sbo', 'Sc08g0008770' => 'sci', 'Sc12g0010520' => 'sci', 'Sc15g0000490' => 'sci', 'Sc23g0004250' => 'sci', 'Sed0001708' => 'sed', 'Sed0006913' => 'sed', 'Sed0010087' => 'sed', 'Sed0012607' => 'sed', 'Sed0014419' => 'sed', 'Sed0017598' => 'sed', 'Sed0027990' => 'sed', 'SEGI_11407' => 'sgi', 'SEGI_36444' => 'sgi', 'SGA_v2.0_scaffold163G38002' => 'sas', 'SGA_v2.0_scaffold20G09177' => 'sas', 'SGA_v2.0_scaffold21G09472' => 'sas', 'SGA_v2.0_scaffold64G21860' => 'sas', 'SGA_v2.0_scaffold71G23864' => 'sas', 'SGA_v2.0_scaffold97G29150' => 'sas', 'SHI18834' => 'shi', 'Solyc03g121970.1' => 'sly', 'Solyc07g041290.3' => 'sly', 'Solyc08g062180.3' => 'sly', 'Solyc12g049255.1' => 'sly', 'Sopen03g040790' => 'spe', 'Sopen07g020600' => 'spe', 'Sopen08g017750' => 'spe', 'Sopen12g023740' => 'spe', 'Sp3g12230' => 'spa', 'Sp6g31550' => 'spa', 'SpUn0007_0150' => 'spa', 'SpUn0013_0010' => 'spa', 'TAR383G0478' => 'tar', 'TAR624G1410' => 'tar', 'TAR626G0456' => 'tar', 'THA.LOC104799149' => 'tha', 'THA.LOC104803702' => 'tha', 'THA.LOC104811003' => 'tha', 'THA.LOC104815629' => 'tha', 'THA.LOC104822656' => 'tha', 'Thecc.06G118100' => 'tca', 'Thecc.09G061200' => 'tca', 'Thecc.09G081100' => 'tca', 'Thhalv10012317m.g' => 'esa', 'Thhalv10013873m.g' => 'esa', 'Thhalv10022002m.g' => 'esa', 'TPR.G16451' => 'tpr', 'TPR.G3574' => 'tpr', 'TPR.G38875' => 'tpr', 'TPR.G9464' => 'tpr', 'TWI31G0706' => 'twi', 'TWI32G0026' => 'twi', 'TWI32G0337' => 'twi', 'TWI34G1323' => 'twi', 'TWI63G0114' => 'twi', 'TWI75G1417' => 'twi', 'unitig_32.g11566' => 'ugi', 'unitig_748.g7466' => 'ugi', 'unitig_748.g7533' => 'ugi', 'unitig_749.g14235' => 'ugi', 'vmacro15021' => 'vma', 'vmacro17175' => 'vma', 'VMungo0331G1191' => 'vmu', 'VMungo0647G0706' => 'vmu', 'VMungo1215G1300' => 'vmu', 'VMungo1309G2463' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001488', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001488' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001488', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '426', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001488' ) ), 'genes' => array( 'A01p39640' => 'bna', 'A02p01350' => 'bna', 'A05p35430' => 'bna', 'A06p00470' => 'bna', 'A08p01130' => 'bna', 'A10p25720' => 'bna', 'Aa31LG10G1240' => 'aar', 'Aa31LG3G15180' => 'aar', 'Aa31LG4G13280' => 'aar', 'Aa31LG8G1180' => 'aar', 'Actinidia03307' => 'ach', 'Actinidia21787' => 'ach', 'Actinidia25699' => 'ach', 'Actinidia27576' => 'ach', 'Actinidia32178' => 'ach', 'Actinidia39685' => 'ach', 'Ah.08g216680' => 'amhyb', 'Ah.10g033990' => 'amhyb', 'AL1G62910' => 'aly', 'AL3G26180' => 'aly', 'AL5G21160' => 'aly', 'AL6G22840' => 'aly', 'Aqoxy1G01010' => 'aox', 'Aqoxy4G01396' => 'aox', 'Aqoxy7G01095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1030I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N5SZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62UK56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8XJ49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3VH7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HX0TR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S358VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVA0C2' => 'arhy', 'AT1G54200' => 'ath', 'AT3G13980' => 'ath', 'AT3G42800' => 'ath', 'AT5G12050' => 'ath', 'ATR0598G179' => 'atr', 'Atru.chr1.3909' => 'acertr', 'Atru.chr7.1663' => 'acertr', 'Atru.chr7.1866' => 'acertr', 'AUR62001497' => 'cqu', 'AUR62009095' => 'cqu', 'AUR62009873' => 'cqu', 'AUR62020576' => 'cqu', 'AUR62028996' => 'cqu', 'BcaB01g05432' => 'bca', 'BcaB04g17017' => 'bca', 'BcaB04g20965' => 'bca', 'BcaB06g25413' => 'bca', 'BcaB07g33247' => 'bca', 'BcaC01g01441' => 'bca', 'BcaC03g13409' => 'bca', 'BcaC05g29134' => 'bca', 'BcaC08g43599' => 'bca', 'BcaC09g48386' => 'bca', 'BcaNung02630' => 'bca', 'BolC1t05011H' => 'bol', 'BolC2t06503H' => 'bol', 'BolC3t13127H' => 'bol', 'BolC3t21524H' => 'bol', 'BolC5t34042H' => 'bol', 'BolC6t36070H' => 'bol', 'BolC9t59310H' => 'bol', 'BraA01t04005Z' => 'bra', 'BraA02t05114Z' => 'bra', 'BraA03t09876Z' => 'bra', 'BraA05t22353Z' => 'bra', 'BraA06t23261Z' => 'bra', 'BraA08t32167Z' => 'bra', 'BraA10t44637Z' => 'bra', 'C01p50620' => 'bna', 'C02p05590' => 'bna', 'C03p06200' => 'bna', 'C03p92070' => 'bna', 'C05p53720' => 'bna', 'C06p09970' => 'bna', 'C09p64790' => 'bna', 'CAN.G1387.3' => 'can', 'CAN.G1387.5' => 'can', 'CANSAT25G3298' => 'cansat', 'CANSAT56G0195' => 'cansat', 'CANSAT56G4431' => 'cansat', 'CARHR044570' => 'chi', 'CARHR088800' => 'chi', 'CARHR153760' => 'chi', 'CARHR201080' => 'chi', 'Carub.0001s4343' => 'cru', 'Carub.0003s1356' => 'cru', 'Carub.0005s0885' => 'cru', 'Carub.0006s1057' => 'cru', 'Ca_13105_v3' => 'car', 'Ca_15839_v3' => 'car', 'Cc04_g01440' => 'ccan', 'Cc06_g11890' => 'ccan', 'Cc08_g01330' => 'ccan', 'CDE05G0831' => 'cde', 'CDE05G3396' => 'cde', 'CDE10G0469' => 'cde', 'CDE11G0090' => 'cde', 'Cfa003031' => 'cfa', 'Cfa003543' => 'cfa', 'Cfa011880' => 'cfa', 'Cfa018007' => 'cfa', 'Ciclev10008257m.g' => 'ccl', 'Ciclev10008758m.g' => 'ccl', 'Ciclev10025682m.g' => 'ccl', 'CiPaw.01G220600' => 'cil', 'CiPaw.02G136700' => 'cil', 'CiPaw.03G210100' => 'cil', 'CiPaw.04G146700' => 'cil', 'CiPaw.10G053700' => 'cil', 'CiPaw.15G090100' => 'cil', 'ClCG05G015630' => 'cla', 'ClCG07G013990' => 'cla', 'ClCG08G009900' => 'cla', 'ClCG09G000910' => 'cla', 'COL.COLO4_18134' => 'col', 'COL.COLO4_21120' => 'col', 'COL.COLO4_30774' => 'col', 'Cpa.g.sc126.40' => 'cpa', 'Cpa.g.sc25.102' => 'cpa', 'Cpa.g.sc28.87' => 'cpa', 'CsaV3_3G043550' => 'csa', 'CsaV3_4G035960' => 'csa', 'CsaV3_6G032000' => 'csa', 'CsaV3_7G034550' => 'csa', 'CSS0004414' => 'camsi', 'CSS0039321' => 'camsi', 'DCAR_007642' => 'dca', 'DCAR_022698' => 'dca', 'DCAR_026410' => 'dca', 'DCAR_028288' => 'dca', 'Dinv04028' => 'din', 'Dinv04257' => 'din', 'Dinv10389' => 'din', 'Dinv25581' => 'din', 'Dinv37875' => 'din', 'Dinv41833' => 'din', 'Dinv42369' => 'din', 'Dinv44677' => 'din', 'Duzib150G0073' => 'dzi', 'Duzib150G1066' => 'dzi', 'Duzib160G0588' => 'dzi', 'Duzib168G0244' => 'dzi', 'Duzib168G1997' => 'dzi', 'Duzib187G1785' => 'dzi', 'Duzib187G1885' => 'dzi', 'Duzib192G0094' => 'dzi', 'Duzib235G0516' => 'dzi', 'ECA236G0014' => 'eca', 'ECA240G4202' => 'eca', 'ECA247G0079' => 'eca', 'EL10Ac2g03800' => 'bvu', 'EL10Ac7g16397' => 'bvu', 'EL10Ac8g19131' => 'bvu', 'Eucgr.C00707' => 'egr', 'Eucgr.C03147' => 'egr', 'Eucgr.F03172' => 'egr', 'Eucgr.J02829' => 'egr', 'FAN02G1354' => 'fan', 'FAN05G4431' => 'fan', 'FAN09G3059' => 'fan', 'FAN14G3952' => 'fan', 'FAN15G1669' => 'fan', 'FAN19G1765' => 'fan', 'FAN20G1484' => 'fan', 'FAN23G0146' => 'fan', 'FAN24G0924' => 'fan', 'FAN26G0348' => 'fan', 'FAN26G2822' => 'fan', 'FAN27G1098' => 'fan', 'FAN28G0322' => 'fan', 'FAN28G2908' => 'fan', 'FvH4_1g08230' => 'fve', 'FvH4_2g31260' => 'fve', 'FvH4_6g34500' => 'fve', 'Glyma.04G055100' => 'gma', 'Glyma.06G055200' => 'gma', 'Glyma.07G036700' => 'gma', 'Glyma.13G108300' => 'gma', 'Glyma.14G099400' => 'gma', 'Glyma.16G006100' => 'gma', 'Glyma.17G051100' => 'gma', 'Glyma.17G225300' => 'gma', 'Gohir.A05G039500' => 'ghi', 'Gohir.A05G137600' => 'ghi', 'Gohir.A05G406200' => 'ghi', 'Gohir.A06G075300' => 'ghi', 'Gohir.A06G083100' => 'ghi', 'Gohir.A07G020501' => 'ghi', 'Gohir.A10G052900' => 'ghi', 'Gohir.D04G009400' => 'ghi', 'Gohir.D05G041000' => 'ghi', 'Gohir.D05G139700' => 'ghi', 'Gohir.D06G074100' => 'ghi', 'Gohir.D06G083800' => 'ghi', 'Gohir.D07G020200' => 'ghi', 'Gohir.D10G054700' => 'ghi', 'Gorai.001G021000' => 'gra', 'Gorai.009G041500' => 'gra', 'Gorai.009G144000' => 'gra', 'Gorai.010G086600' => 'gra', 'Gorai.010G097300' => 'gra', 'Gorai.011G058200' => 'gra', 'Gorai.012G011300' => 'gra', 'GSVIVG01015116001' => 'vvi', 'GSVIVG01016780001' => 'vvi', 'HanXRQChr03g0069531' => 'han', 'HanXRQChr04g0094821' => 'han', 'HanXRQChr05g0139531' => 'han', 'HanXRQChr06g0182641' => 'han', 'HanXRQChr09g0276771' => 'han', 'HanXRQChr10g0312441' => 'han', 'HanXRQChr10g0319591' => 'han', 'HanXRQChr15g0497071' => 'han', 'HanXRQChr16g0532421' => 'han', 'Haze_16017' => 'cav', 'Haze_18123' => 'cav', 'Haze_25969' => 'cav', 'Hma1.2p1_0291F.1_g115200' => 'hma', 'Hma1.2p1_0732F.1_g209990' => 'hma', 'Hma1.2p1_0797F.1_g219410' => 'hma', 'HPP92_004377' => 'vpl', 'HPP92_007989' => 'vpl', 'HPP92_023459' => 'vpl', 'HPP92_023473' => 'vpl', 'Lalb_Chr04g0263371' => 'lal', 'Lalb_Chr07g0181051' => 'lal', 'Lalb_Chr08g0244861' => 'lal', 'Lalb_Chr11g0074331' => 'lal', 'Lalb_Chr13g0299551' => 'lal', 'Lalb_Chr14g0375531' => 'lal', 'Lalb_Chr24g0393631' => 'lal', 'Lalb_Chr25g0281171' => 'lal', 'Lj1g0010668' => 'lja', 'Lj3g0028193' => 'lja', 'Lj5C38T14' => 'lonja', 'Lj5g0009631' => 'lja', 'Lj6g0003493' => 'lja', 'Lj7C233T2' => 'lonja', 'Lj8C508T0' => 'lonja', 'Lj8C510T4' => 'lonja', 'Lj9P522T34' => 'lonja', 'Lsat_1_v5_gn_1_37441' => 'lsa', 'Lsat_1_v5_gn_4_93600' => 'lsa', 'Lsat_1_v5_gn_5_135800' => 'lsa', 'Lsat_1_v5_gn_5_141901' => 'lsa', 'Lsat_1_v5_gn_7_60060' => 'lsa', 'Lsat_1_v5_gn_8_99360' => 'lsa', 'Manes.03G038000' => 'mes', 'Manes.03G052400' => 'mes', 'Manes.04G143200' => 'mes', 'Manes.11G021800' => 'mes', 'Manes.16G084100' => 'mes', 'Manes.16G097700' => 'mes', 'MBI13_g11365_MAGBIO' => 'mbi', 'MBI19_g35474_MAGBIO' => 'mbi', 'MD02G1086600' => 'mdo', 'MD08G1069700' => 'mdo', 'MD09G1185600' => 'mdo', 'MD15G1052300' => 'mdo', 'MD15G1213800' => 'mdo', 'MD17G1170300' => 'mdo', 'Medtr1g015275' => 'mtr', 'Medtr3g104880' => 'mtr', 'Medtr4g125620' => 'mtr', 'Medtr8g019660' => 'mtr', 'MELO3C011481.2' => 'cme', 'MELO3C016903.2' => 'cme', 'MELO3C024362.2' => 'cme', 'MELO3C025811.2' => 'cme', 'Migut.A00091' => 'egut', 'Migut.E01574' => 'egut', 'Migut.I01063' => 'egut', 'Migut.J00952' => 'egut', 'Migut.L01544' => 'egut', 'MSTRG.10960' => 'ama', 'MSTRG.11640' => 'ama', 'MSTRG.14063' => 'ama', 'Nitab4.5_0000073g0010' => 'nta', 'Nitab4.5_0001866g0020' => 'nta', 'Nitab4.5_0002072g0060' => 'nta', 'Nitab4.5_0002842g0070' => 'nta', 'Nitab4.5_0002879g0080' => 'nta', 'Nitab4.5_0003670g0010' => 'nta', 'Nitab4.5_0004953g0060' => 'nta', 'Nitab4.5_0009588g0020' => 'nta', 'Nitab4.5_0010890g0020' => 'nta', 'Nn3g17646' => 'nnu', 'Nn6g35590' => 'nnu', 'Oeu002849.1' => 'oeu', 'Oeu003979.1' => 'oeu', 'Oeu007567.1' => 'oeu', 'Oeu010818.1' => 'oeu', 'Oeu022777.1' => 'oeu', 'Oeu027281.1' => 'oeu', 'Oeu027282.1' => 'oeu', 'Oeu029698.1' => 'oeu', 'Oeu049518.1' => 'oeu', 'Oeu051321.1' => 'oeu', 'Oeu058721.1' => 'oeu', 'Oeu063408.1' => 'oeu', 'Peaxi162Scf00038g01811' => 'pax', 'Peaxi162Scf00101g00121' => 'pax', 'Peaxi162Scf00219g00053' => 'pax', 'Peaxi162Scf00498g00065' => 'pax', 'Peaxi162Scf00809g00410' => 'pax', 'PGR031G1119' => 'pgr', 'PGR044G1728' => 'pgr', 'PGR102G0969' => 'pgr', 'PGR119G0990' => 'pgr', 'PGR142G0115' => 'pgr', 'PGSC0003DMG400002570' => 'stu', 'PGSC0003DMG400011607' => 'stu', 'PGSC0003DMG400011608' => 'stu', 'PGSC0003DMG400019573' => 'stu', 'PGSC0003DMG400021740' => 'stu', 'Phvul.001G039400' => 'pvu', 'Phvul.003G132800' => 'pvu', 'Phvul.009G081100' => 'pvu', 'Phvul.010G132500' => 'pvu', 'Potri.001G170500' => 'ptr', 'Potri.003G063400' => 'ptr', 'Potri.006G144700' => 'ptr', 'Potri.006G222700' => 'ptr', 'Potri.018G049900' => 'ptr', 'Potri.018G065000' => 'ptr', 'Prupe.1G406300' => 'ppe', 'Prupe.3G043400' => 'ppe', 'Prupe.7G203200' => 'ppe', 'Psat0s89g0040' => 'psa', 'Psat0s89g0080' => 'psa', 'Psat4g017040' => 'psa', 'Psat4g183280' => 'psa', 'Psat6g022320' => 'psa', 'PSO063G4179' => 'pso', 'PSO210G0965' => 'pso', 'PSO210G7252' => 'pso', 'PSO421G0310' => 'pso', 'QL02p000252' => 'qlo', 'QL02p061086' => 'qlo', 'QL05p008269' => 'qlo', 'RcHm_v2.0_Chr2g0094281' => 'rch', 'RcHm_v2.0_Chr2g0144811' => 'rch', 'RcHm_v2.0_Chr6g0311541' => 'rch', 'Rhsim05G0012700' => 'rsi', 'Rhsim08G0237500' => 'rsi', 'Sabra01G0140700' => 'sbr', 'Sabra01G0140800' => 'sbr', 'Sabra03G0037000' => 'sbr', 'Sabra06G0113200' => 'sbr', 'Sabra06G0114500' => 'sbr', 'Sabra06G0172100' => 'sbr', 'Sabra18G0046900' => 'sbr', 'Sabra18G0057600' => 'sbr', 'SalBow4G1810' => 'sbo', 'SalBow6G0975' => 'sbo', 'SalBow6G6945' => 'sbo', 'SalBow7G2112' => 'sbo', 'Sc08g0008770' => 'sci', 'Sc12g0010520' => 'sci', 'Sc15g0000490' => 'sci', 'Sc23g0004250' => 'sci', 'Sed0001708' => 'sed', 'Sed0006913' => 'sed', 'Sed0010087' => 'sed', 'Sed0012607' => 'sed', 'Sed0014419' => 'sed', 'Sed0017598' => 'sed', 'Sed0027990' => 'sed', 'SEGI_11407' => 'sgi', 'SEGI_36444' => 'sgi', 'SGA_v2.0_scaffold163G38002' => 'sas', 'SGA_v2.0_scaffold20G09177' => 'sas', 'SGA_v2.0_scaffold21G09472' => 'sas', 'SGA_v2.0_scaffold64G21860' => 'sas', 'SGA_v2.0_scaffold71G23864' => 'sas', 'SGA_v2.0_scaffold97G29150' => 'sas', 'SHI18834' => 'shi', 'Solyc03g121970.1' => 'sly', 'Solyc07g041290.3' => 'sly', 'Solyc08g062180.3' => 'sly', 'Solyc12g049255.1' => 'sly', 'Sopen03g040790' => 'spe', 'Sopen07g020600' => 'spe', 'Sopen08g017750' => 'spe', 'Sopen12g023740' => 'spe', 'Sp3g12230' => 'spa', 'Sp6g31550' => 'spa', 'SpUn0007_0150' => 'spa', 'SpUn0013_0010' => 'spa', 'TAR383G0478' => 'tar', 'TAR624G1410' => 'tar', 'TAR626G0456' => 'tar', 'THA.LOC104799149' => 'tha', 'THA.LOC104803702' => 'tha', 'THA.LOC104811003' => 'tha', 'THA.LOC104815629' => 'tha', 'THA.LOC104822656' => 'tha', 'Thecc.06G118100' => 'tca', 'Thecc.09G061200' => 'tca', 'Thecc.09G081100' => 'tca', 'Thhalv10012317m.g' => 'esa', 'Thhalv10013873m.g' => 'esa', 'Thhalv10022002m.g' => 'esa', 'TPR.G16451' => 'tpr', 'TPR.G3574' => 'tpr', 'TPR.G38875' => 'tpr', 'TPR.G9464' => 'tpr', 'TWI31G0706' => 'twi', 'TWI32G0026' => 'twi', 'TWI32G0337' => 'twi', 'TWI34G1323' => 'twi', 'TWI63G0114' => 'twi', 'TWI75G1417' => 'twi', 'unitig_32.g11566' => 'ugi', 'unitig_748.g7466' => 'ugi', 'unitig_748.g7533' => 'ugi', 'unitig_749.g14235' => 'ugi', 'vmacro15021' => 'vma', 'vmacro17175' => 'vma', 'VMungo0331G1191' => 'vmu', 'VMungo0647G0706' => 'vmu', 'VMungo1215G1300' => 'vmu', 'VMungo1309G2463' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001488' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001488' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001488' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001488' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001488', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '426', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39640' => 'bna', 'A02p01350' => 'bna', 'A05p35430' => 'bna', 'A06p00470' => 'bna', 'A08p01130' => 'bna', 'A10p25720' => 'bna', 'Aa31LG10G1240' => 'aar', 'Aa31LG3G15180' => 'aar', 'Aa31LG4G13280' => 'aar', 'Aa31LG8G1180' => 'aar', 'Actinidia03307' => 'ach', 'Actinidia21787' => 'ach', 'Actinidia25699' => 'ach', 'Actinidia27576' => 'ach', 'Actinidia32178' => 'ach', 'Actinidia39685' => 'ach', 'Ah.08g216680' => 'amhyb', 'Ah.10g033990' => 'amhyb', 'AL1G62910' => 'aly', 'AL3G26180' => 'aly', 'AL5G21160' => 'aly', 'AL6G22840' => 'aly', 'Aqoxy1G01010' => 'aox', 'Aqoxy4G01396' => 'aox', 'Aqoxy7G01095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1030I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N5SZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62UK56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8XJ49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3VH7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HX0TR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S358VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVA0C2' => 'arhy', 'AT1G54200' => 'ath', 'AT3G13980' => 'ath', 'AT3G42800' => 'ath', 'AT5G12050' => 'ath', 'ATR0598G179' => 'atr', 'Atru.chr1.3909' => 'acertr', 'Atru.chr7.1663' => 'acertr', 'Atru.chr7.1866' => 'acertr', 'AUR62001497' => 'cqu', 'AUR62009095' => 'cqu', 'AUR62009873' => 'cqu', 'AUR62020576' => 'cqu', 'AUR62028996' => 'cqu', 'BcaB01g05432' => 'bca', 'BcaB04g17017' => 'bca', 'BcaB04g20965' => 'bca', 'BcaB06g25413' => 'bca', 'BcaB07g33247' => 'bca', 'BcaC01g01441' => 'bca', 'BcaC03g13409' => 'bca', 'BcaC05g29134' => 'bca', 'BcaC08g43599' => 'bca', 'BcaC09g48386' => 'bca', 'BcaNung02630' => 'bca', 'BolC1t05011H' => 'bol', 'BolC2t06503H' => 'bol', 'BolC3t13127H' => 'bol', 'BolC3t21524H' => 'bol', 'BolC5t34042H' => 'bol', 'BolC6t36070H' => 'bol', 'BolC9t59310H' => 'bol', 'BraA01t04005Z' => 'bra', 'BraA02t05114Z' => 'bra', 'BraA03t09876Z' => 'bra', 'BraA05t22353Z' => 'bra', 'BraA06t23261Z' => 'bra', 'BraA08t32167Z' => 'bra', 'BraA10t44637Z' => 'bra', 'C01p50620' => 'bna', 'C02p05590' => 'bna', 'C03p06200' => 'bna', 'C03p92070' => 'bna', 'C05p53720' => 'bna', 'C06p09970' => 'bna', 'C09p64790' => 'bna', 'CAN.G1387.3' => 'can', 'CAN.G1387.5' => 'can', 'CANSAT25G3298' => 'cansat', 'CANSAT56G0195' => 'cansat', 'CANSAT56G4431' => 'cansat', 'CARHR044570' => 'chi', 'CARHR088800' => 'chi', 'CARHR153760' => 'chi', 'CARHR201080' => 'chi', 'Carub.0001s4343' => 'cru', 'Carub.0003s1356' => 'cru', 'Carub.0005s0885' => 'cru', 'Carub.0006s1057' => 'cru', 'Ca_13105_v3' => 'car', 'Ca_15839_v3' => 'car', 'Cc04_g01440' => 'ccan', 'Cc06_g11890' => 'ccan', 'Cc08_g01330' => 'ccan', 'CDE05G0831' => 'cde', 'CDE05G3396' => 'cde', 'CDE10G0469' => 'cde', 'CDE11G0090' => 'cde', 'Cfa003031' => 'cfa', 'Cfa003543' => 'cfa', 'Cfa011880' => 'cfa', 'Cfa018007' => 'cfa', 'Ciclev10008257m.g' => 'ccl', 'Ciclev10008758m.g' => 'ccl', 'Ciclev10025682m.g' => 'ccl', 'CiPaw.01G220600' => 'cil', 'CiPaw.02G136700' => 'cil', 'CiPaw.03G210100' => 'cil', 'CiPaw.04G146700' => 'cil', 'CiPaw.10G053700' => 'cil', 'CiPaw.15G090100' => 'cil', 'ClCG05G015630' => 'cla', 'ClCG07G013990' => 'cla', 'ClCG08G009900' => 'cla', 'ClCG09G000910' => 'cla', 'COL.COLO4_18134' => 'col', 'COL.COLO4_21120' => 'col', 'COL.COLO4_30774' => 'col', 'Cpa.g.sc126.40' => 'cpa', 'Cpa.g.sc25.102' => 'cpa', 'Cpa.g.sc28.87' => 'cpa', 'CsaV3_3G043550' => 'csa', 'CsaV3_4G035960' => 'csa', 'CsaV3_6G032000' => 'csa', 'CsaV3_7G034550' => 'csa', 'CSS0004414' => 'camsi', 'CSS0039321' => 'camsi', 'DCAR_007642' => 'dca', 'DCAR_022698' => 'dca', 'DCAR_026410' => 'dca', 'DCAR_028288' => 'dca', 'Dinv04028' => 'din', 'Dinv04257' => 'din', 'Dinv10389' => 'din', 'Dinv25581' => 'din', 'Dinv37875' => 'din', 'Dinv41833' => 'din', 'Dinv42369' => 'din', 'Dinv44677' => 'din', 'Duzib150G0073' => 'dzi', 'Duzib150G1066' => 'dzi', 'Duzib160G0588' => 'dzi', 'Duzib168G0244' => 'dzi', 'Duzib168G1997' => 'dzi', 'Duzib187G1785' => 'dzi', 'Duzib187G1885' => 'dzi', 'Duzib192G0094' => 'dzi', 'Duzib235G0516' => 'dzi', 'ECA236G0014' => 'eca', 'ECA240G4202' => 'eca', 'ECA247G0079' => 'eca', 'EL10Ac2g03800' => 'bvu', 'EL10Ac7g16397' => 'bvu', 'EL10Ac8g19131' => 'bvu', 'Eucgr.C00707' => 'egr', 'Eucgr.C03147' => 'egr', 'Eucgr.F03172' => 'egr', 'Eucgr.J02829' => 'egr', 'FAN02G1354' => 'fan', 'FAN05G4431' => 'fan', 'FAN09G3059' => 'fan', 'FAN14G3952' => 'fan', 'FAN15G1669' => 'fan', 'FAN19G1765' => 'fan', 'FAN20G1484' => 'fan', 'FAN23G0146' => 'fan', 'FAN24G0924' => 'fan', 'FAN26G0348' => 'fan', 'FAN26G2822' => 'fan', 'FAN27G1098' => 'fan', 'FAN28G0322' => 'fan', 'FAN28G2908' => 'fan', 'FvH4_1g08230' => 'fve', 'FvH4_2g31260' => 'fve', 'FvH4_6g34500' => 'fve', 'Glyma.04G055100' => 'gma', 'Glyma.06G055200' => 'gma', 'Glyma.07G036700' => 'gma', 'Glyma.13G108300' => 'gma', 'Glyma.14G099400' => 'gma', 'Glyma.16G006100' => 'gma', 'Glyma.17G051100' => 'gma', 'Glyma.17G225300' => 'gma', 'Gohir.A05G039500' => 'ghi', 'Gohir.A05G137600' => 'ghi', 'Gohir.A05G406200' => 'ghi', 'Gohir.A06G075300' => 'ghi', 'Gohir.A06G083100' => 'ghi', 'Gohir.A07G020501' => 'ghi', 'Gohir.A10G052900' => 'ghi', 'Gohir.D04G009400' => 'ghi', 'Gohir.D05G041000' => 'ghi', 'Gohir.D05G139700' => 'ghi', 'Gohir.D06G074100' => 'ghi', 'Gohir.D06G083800' => 'ghi', 'Gohir.D07G020200' => 'ghi', 'Gohir.D10G054700' => 'ghi', 'Gorai.001G021000' => 'gra', 'Gorai.009G041500' => 'gra', 'Gorai.009G144000' => 'gra', 'Gorai.010G086600' => 'gra', 'Gorai.010G097300' => 'gra', 'Gorai.011G058200' => 'gra', 'Gorai.012G011300' => 'gra', 'GSVIVG01015116001' => 'vvi', 'GSVIVG01016780001' => 'vvi', 'HanXRQChr03g0069531' => 'han', 'HanXRQChr04g0094821' => 'han', 'HanXRQChr05g0139531' => 'han', 'HanXRQChr06g0182641' => 'han', 'HanXRQChr09g0276771' => 'han', 'HanXRQChr10g0312441' => 'han', 'HanXRQChr10g0319591' => 'han', 'HanXRQChr15g0497071' => 'han', 'HanXRQChr16g0532421' => 'han', 'Haze_16017' => 'cav', 'Haze_18123' => 'cav', 'Haze_25969' => 'cav', 'Hma1.2p1_0291F.1_g115200' => 'hma', 'Hma1.2p1_0732F.1_g209990' => 'hma', 'Hma1.2p1_0797F.1_g219410' => 'hma', 'HPP92_004377' => 'vpl', 'HPP92_007989' => 'vpl', 'HPP92_023459' => 'vpl', 'HPP92_023473' => 'vpl', 'Lalb_Chr04g0263371' => 'lal', 'Lalb_Chr07g0181051' => 'lal', 'Lalb_Chr08g0244861' => 'lal', 'Lalb_Chr11g0074331' => 'lal', 'Lalb_Chr13g0299551' => 'lal', 'Lalb_Chr14g0375531' => 'lal', 'Lalb_Chr24g0393631' => 'lal', 'Lalb_Chr25g0281171' => 'lal', 'Lj1g0010668' => 'lja', 'Lj3g0028193' => 'lja', 'Lj5C38T14' => 'lonja', 'Lj5g0009631' => 'lja', 'Lj6g0003493' => 'lja', 'Lj7C233T2' => 'lonja', 'Lj8C508T0' => 'lonja', 'Lj8C510T4' => 'lonja', 'Lj9P522T34' => 'lonja', 'Lsat_1_v5_gn_1_37441' => 'lsa', 'Lsat_1_v5_gn_4_93600' => 'lsa', 'Lsat_1_v5_gn_5_135800' => 'lsa', 'Lsat_1_v5_gn_5_141901' => 'lsa', 'Lsat_1_v5_gn_7_60060' => 'lsa', 'Lsat_1_v5_gn_8_99360' => 'lsa', 'Manes.03G038000' => 'mes', 'Manes.03G052400' => 'mes', 'Manes.04G143200' => 'mes', 'Manes.11G021800' => 'mes', 'Manes.16G084100' => 'mes', 'Manes.16G097700' => 'mes', 'MBI13_g11365_MAGBIO' => 'mbi', 'MBI19_g35474_MAGBIO' => 'mbi', 'MD02G1086600' => 'mdo', 'MD08G1069700' => 'mdo', 'MD09G1185600' => 'mdo', 'MD15G1052300' => 'mdo', 'MD15G1213800' => 'mdo', 'MD17G1170300' => 'mdo', 'Medtr1g015275' => 'mtr', 'Medtr3g104880' => 'mtr', 'Medtr4g125620' => 'mtr', 'Medtr8g019660' => 'mtr', 'MELO3C011481.2' => 'cme', 'MELO3C016903.2' => 'cme', 'MELO3C024362.2' => 'cme', 'MELO3C025811.2' => 'cme', 'Migut.A00091' => 'egut', 'Migut.E01574' => 'egut', 'Migut.I01063' => 'egut', 'Migut.J00952' => 'egut', 'Migut.L01544' => 'egut', 'MSTRG.10960' => 'ama', 'MSTRG.11640' => 'ama', 'MSTRG.14063' => 'ama', 'Nitab4.5_0000073g0010' => 'nta', 'Nitab4.5_0001866g0020' => 'nta', 'Nitab4.5_0002072g0060' => 'nta', 'Nitab4.5_0002842g0070' => 'nta', 'Nitab4.5_0002879g0080' => 'nta', 'Nitab4.5_0003670g0010' => 'nta', 'Nitab4.5_0004953g0060' => 'nta', 'Nitab4.5_0009588g0020' => 'nta', 'Nitab4.5_0010890g0020' => 'nta', 'Nn3g17646' => 'nnu', 'Nn6g35590' => 'nnu', 'Oeu002849.1' => 'oeu', 'Oeu003979.1' => 'oeu', 'Oeu007567.1' => 'oeu', 'Oeu010818.1' => 'oeu', 'Oeu022777.1' => 'oeu', 'Oeu027281.1' => 'oeu', 'Oeu027282.1' => 'oeu', 'Oeu029698.1' => 'oeu', 'Oeu049518.1' => 'oeu', 'Oeu051321.1' => 'oeu', 'Oeu058721.1' => 'oeu', 'Oeu063408.1' => 'oeu', 'Peaxi162Scf00038g01811' => 'pax', 'Peaxi162Scf00101g00121' => 'pax', 'Peaxi162Scf00219g00053' => 'pax', 'Peaxi162Scf00498g00065' => 'pax', 'Peaxi162Scf00809g00410' => 'pax', 'PGR031G1119' => 'pgr', 'PGR044G1728' => 'pgr', 'PGR102G0969' => 'pgr', 'PGR119G0990' => 'pgr', 'PGR142G0115' => 'pgr', 'PGSC0003DMG400002570' => 'stu', 'PGSC0003DMG400011607' => 'stu', 'PGSC0003DMG400011608' => 'stu', 'PGSC0003DMG400019573' => 'stu', 'PGSC0003DMG400021740' => 'stu', 'Phvul.001G039400' => 'pvu', 'Phvul.003G132800' => 'pvu', 'Phvul.009G081100' => 'pvu', 'Phvul.010G132500' => 'pvu', 'Potri.001G170500' => 'ptr', 'Potri.003G063400' => 'ptr', 'Potri.006G144700' => 'ptr', 'Potri.006G222700' => 'ptr', 'Potri.018G049900' => 'ptr', 'Potri.018G065000' => 'ptr', 'Prupe.1G406300' => 'ppe', 'Prupe.3G043400' => 'ppe', 'Prupe.7G203200' => 'ppe', 'Psat0s89g0040' => 'psa', 'Psat0s89g0080' => 'psa', 'Psat4g017040' => 'psa', 'Psat4g183280' => 'psa', 'Psat6g022320' => 'psa', 'PSO063G4179' => 'pso', 'PSO210G0965' => 'pso', 'PSO210G7252' => 'pso', 'PSO421G0310' => 'pso', 'QL02p000252' => 'qlo', 'QL02p061086' => 'qlo', 'QL05p008269' => 'qlo', 'RcHm_v2.0_Chr2g0094281' => 'rch', 'RcHm_v2.0_Chr2g0144811' => 'rch', 'RcHm_v2.0_Chr6g0311541' => 'rch', 'Rhsim05G0012700' => 'rsi', 'Rhsim08G0237500' => 'rsi', 'Sabra01G0140700' => 'sbr', 'Sabra01G0140800' => 'sbr', 'Sabra03G0037000' => 'sbr', 'Sabra06G0113200' => 'sbr', 'Sabra06G0114500' => 'sbr', 'Sabra06G0172100' => 'sbr', 'Sabra18G0046900' => 'sbr', 'Sabra18G0057600' => 'sbr', 'SalBow4G1810' => 'sbo', 'SalBow6G0975' => 'sbo', 'SalBow6G6945' => 'sbo', 'SalBow7G2112' => 'sbo', 'Sc08g0008770' => 'sci', 'Sc12g0010520' => 'sci', 'Sc15g0000490' => 'sci', 'Sc23g0004250' => 'sci', 'Sed0001708' => 'sed', 'Sed0006913' => 'sed', 'Sed0010087' => 'sed', 'Sed0012607' => 'sed', 'Sed0014419' => 'sed', 'Sed0017598' => 'sed', 'Sed0027990' => 'sed', 'SEGI_11407' => 'sgi', 'SEGI_36444' => 'sgi', 'SGA_v2.0_scaffold163G38002' => 'sas', 'SGA_v2.0_scaffold20G09177' => 'sas', 'SGA_v2.0_scaffold21G09472' => 'sas', 'SGA_v2.0_scaffold64G21860' => 'sas', 'SGA_v2.0_scaffold71G23864' => 'sas', 'SGA_v2.0_scaffold97G29150' => 'sas', 'SHI18834' => 'shi', 'Solyc03g121970.1' => 'sly', 'Solyc07g041290.3' => 'sly', 'Solyc08g062180.3' => 'sly', 'Solyc12g049255.1' => 'sly', 'Sopen03g040790' => 'spe', 'Sopen07g020600' => 'spe', 'Sopen08g017750' => 'spe', 'Sopen12g023740' => 'spe', 'Sp3g12230' => 'spa', 'Sp6g31550' => 'spa', 'SpUn0007_0150' => 'spa', 'SpUn0013_0010' => 'spa', 'TAR383G0478' => 'tar', 'TAR624G1410' => 'tar', 'TAR626G0456' => 'tar', 'THA.LOC104799149' => 'tha', 'THA.LOC104803702' => 'tha', 'THA.LOC104811003' => 'tha', 'THA.LOC104815629' => 'tha', 'THA.LOC104822656' => 'tha', 'Thecc.06G118100' => 'tca', 'Thecc.09G061200' => 'tca', 'Thecc.09G081100' => 'tca', 'Thhalv10012317m.g' => 'esa', 'Thhalv10013873m.g' => 'esa', 'Thhalv10022002m.g' => 'esa', 'TPR.G16451' => 'tpr', 'TPR.G3574' => 'tpr', 'TPR.G38875' => 'tpr', 'TPR.G9464' => 'tpr', 'TWI31G0706' => 'twi', 'TWI32G0026' => 'twi', 'TWI32G0337' => 'twi', 'TWI34G1323' => 'twi', 'TWI63G0114' => 'twi', 'TWI75G1417' => 'twi', 'unitig_32.g11566' => 'ugi', 'unitig_748.g7466' => 'ugi', 'unitig_748.g7533' => 'ugi', 'unitig_749.g14235' => 'ugi', 'vmacro15021' => 'vma', 'vmacro17175' => 'vma', 'VMungo0331G1191' => 'vmu', 'VMungo0647G0706' => 'vmu', 'VMungo1215G1300' => 'vmu', 'VMungo1309G2463' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001488', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001488' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001488', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '426', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001488' ) ), 'genes' => array( 'A01p39640' => 'bna', 'A02p01350' => 'bna', 'A05p35430' => 'bna', 'A06p00470' => 'bna', 'A08p01130' => 'bna', 'A10p25720' => 'bna', 'Aa31LG10G1240' => 'aar', 'Aa31LG3G15180' => 'aar', 'Aa31LG4G13280' => 'aar', 'Aa31LG8G1180' => 'aar', 'Actinidia03307' => 'ach', 'Actinidia21787' => 'ach', 'Actinidia25699' => 'ach', 'Actinidia27576' => 'ach', 'Actinidia32178' => 'ach', 'Actinidia39685' => 'ach', 'Ah.08g216680' => 'amhyb', 'Ah.10g033990' => 'amhyb', 'AL1G62910' => 'aly', 'AL3G26180' => 'aly', 'AL5G21160' => 'aly', 'AL6G22840' => 'aly', 'Aqoxy1G01010' => 'aox', 'Aqoxy4G01396' => 'aox', 'Aqoxy7G01095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1030I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N5SZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62UK56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8XJ49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3VH7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HX0TR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S358VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVA0C2' => 'arhy', 'AT1G54200' => 'ath', 'AT3G13980' => 'ath', 'AT3G42800' => 'ath', 'AT5G12050' => 'ath', 'ATR0598G179' => 'atr', 'Atru.chr1.3909' => 'acertr', 'Atru.chr7.1663' => 'acertr', 'Atru.chr7.1866' => 'acertr', 'AUR62001497' => 'cqu', 'AUR62009095' => 'cqu', 'AUR62009873' => 'cqu', 'AUR62020576' => 'cqu', 'AUR62028996' => 'cqu', 'BcaB01g05432' => 'bca', 'BcaB04g17017' => 'bca', 'BcaB04g20965' => 'bca', 'BcaB06g25413' => 'bca', 'BcaB07g33247' => 'bca', 'BcaC01g01441' => 'bca', 'BcaC03g13409' => 'bca', 'BcaC05g29134' => 'bca', 'BcaC08g43599' => 'bca', 'BcaC09g48386' => 'bca', 'BcaNung02630' => 'bca', 'BolC1t05011H' => 'bol', 'BolC2t06503H' => 'bol', 'BolC3t13127H' => 'bol', 'BolC3t21524H' => 'bol', 'BolC5t34042H' => 'bol', 'BolC6t36070H' => 'bol', 'BolC9t59310H' => 'bol', 'BraA01t04005Z' => 'bra', 'BraA02t05114Z' => 'bra', 'BraA03t09876Z' => 'bra', 'BraA05t22353Z' => 'bra', 'BraA06t23261Z' => 'bra', 'BraA08t32167Z' => 'bra', 'BraA10t44637Z' => 'bra', 'C01p50620' => 'bna', 'C02p05590' => 'bna', 'C03p06200' => 'bna', 'C03p92070' => 'bna', 'C05p53720' => 'bna', 'C06p09970' => 'bna', 'C09p64790' => 'bna', 'CAN.G1387.3' => 'can', 'CAN.G1387.5' => 'can', 'CANSAT25G3298' => 'cansat', 'CANSAT56G0195' => 'cansat', 'CANSAT56G4431' => 'cansat', 'CARHR044570' => 'chi', 'CARHR088800' => 'chi', 'CARHR153760' => 'chi', 'CARHR201080' => 'chi', 'Carub.0001s4343' => 'cru', 'Carub.0003s1356' => 'cru', 'Carub.0005s0885' => 'cru', 'Carub.0006s1057' => 'cru', 'Ca_13105_v3' => 'car', 'Ca_15839_v3' => 'car', 'Cc04_g01440' => 'ccan', 'Cc06_g11890' => 'ccan', 'Cc08_g01330' => 'ccan', 'CDE05G0831' => 'cde', 'CDE05G3396' => 'cde', 'CDE10G0469' => 'cde', 'CDE11G0090' => 'cde', 'Cfa003031' => 'cfa', 'Cfa003543' => 'cfa', 'Cfa011880' => 'cfa', 'Cfa018007' => 'cfa', 'Ciclev10008257m.g' => 'ccl', 'Ciclev10008758m.g' => 'ccl', 'Ciclev10025682m.g' => 'ccl', 'CiPaw.01G220600' => 'cil', 'CiPaw.02G136700' => 'cil', 'CiPaw.03G210100' => 'cil', 'CiPaw.04G146700' => 'cil', 'CiPaw.10G053700' => 'cil', 'CiPaw.15G090100' => 'cil', 'ClCG05G015630' => 'cla', 'ClCG07G013990' => 'cla', 'ClCG08G009900' => 'cla', 'ClCG09G000910' => 'cla', 'COL.COLO4_18134' => 'col', 'COL.COLO4_21120' => 'col', 'COL.COLO4_30774' => 'col', 'Cpa.g.sc126.40' => 'cpa', 'Cpa.g.sc25.102' => 'cpa', 'Cpa.g.sc28.87' => 'cpa', 'CsaV3_3G043550' => 'csa', 'CsaV3_4G035960' => 'csa', 'CsaV3_6G032000' => 'csa', 'CsaV3_7G034550' => 'csa', 'CSS0004414' => 'camsi', 'CSS0039321' => 'camsi', 'DCAR_007642' => 'dca', 'DCAR_022698' => 'dca', 'DCAR_026410' => 'dca', 'DCAR_028288' => 'dca', 'Dinv04028' => 'din', 'Dinv04257' => 'din', 'Dinv10389' => 'din', 'Dinv25581' => 'din', 'Dinv37875' => 'din', 'Dinv41833' => 'din', 'Dinv42369' => 'din', 'Dinv44677' => 'din', 'Duzib150G0073' => 'dzi', 'Duzib150G1066' => 'dzi', 'Duzib160G0588' => 'dzi', 'Duzib168G0244' => 'dzi', 'Duzib168G1997' => 'dzi', 'Duzib187G1785' => 'dzi', 'Duzib187G1885' => 'dzi', 'Duzib192G0094' => 'dzi', 'Duzib235G0516' => 'dzi', 'ECA236G0014' => 'eca', 'ECA240G4202' => 'eca', 'ECA247G0079' => 'eca', 'EL10Ac2g03800' => 'bvu', 'EL10Ac7g16397' => 'bvu', 'EL10Ac8g19131' => 'bvu', 'Eucgr.C00707' => 'egr', 'Eucgr.C03147' => 'egr', 'Eucgr.F03172' => 'egr', 'Eucgr.J02829' => 'egr', 'FAN02G1354' => 'fan', 'FAN05G4431' => 'fan', 'FAN09G3059' => 'fan', 'FAN14G3952' => 'fan', 'FAN15G1669' => 'fan', 'FAN19G1765' => 'fan', 'FAN20G1484' => 'fan', 'FAN23G0146' => 'fan', 'FAN24G0924' => 'fan', 'FAN26G0348' => 'fan', 'FAN26G2822' => 'fan', 'FAN27G1098' => 'fan', 'FAN28G0322' => 'fan', 'FAN28G2908' => 'fan', 'FvH4_1g08230' => 'fve', 'FvH4_2g31260' => 'fve', 'FvH4_6g34500' => 'fve', 'Glyma.04G055100' => 'gma', 'Glyma.06G055200' => 'gma', 'Glyma.07G036700' => 'gma', 'Glyma.13G108300' => 'gma', 'Glyma.14G099400' => 'gma', 'Glyma.16G006100' => 'gma', 'Glyma.17G051100' => 'gma', 'Glyma.17G225300' => 'gma', 'Gohir.A05G039500' => 'ghi', 'Gohir.A05G137600' => 'ghi', 'Gohir.A05G406200' => 'ghi', 'Gohir.A06G075300' => 'ghi', 'Gohir.A06G083100' => 'ghi', 'Gohir.A07G020501' => 'ghi', 'Gohir.A10G052900' => 'ghi', 'Gohir.D04G009400' => 'ghi', 'Gohir.D05G041000' => 'ghi', 'Gohir.D05G139700' => 'ghi', 'Gohir.D06G074100' => 'ghi', 'Gohir.D06G083800' => 'ghi', 'Gohir.D07G020200' => 'ghi', 'Gohir.D10G054700' => 'ghi', 'Gorai.001G021000' => 'gra', 'Gorai.009G041500' => 'gra', 'Gorai.009G144000' => 'gra', 'Gorai.010G086600' => 'gra', 'Gorai.010G097300' => 'gra', 'Gorai.011G058200' => 'gra', 'Gorai.012G011300' => 'gra', 'GSVIVG01015116001' => 'vvi', 'GSVIVG01016780001' => 'vvi', 'HanXRQChr03g0069531' => 'han', 'HanXRQChr04g0094821' => 'han', 'HanXRQChr05g0139531' => 'han', 'HanXRQChr06g0182641' => 'han', 'HanXRQChr09g0276771' => 'han', 'HanXRQChr10g0312441' => 'han', 'HanXRQChr10g0319591' => 'han', 'HanXRQChr15g0497071' => 'han', 'HanXRQChr16g0532421' => 'han', 'Haze_16017' => 'cav', 'Haze_18123' => 'cav', 'Haze_25969' => 'cav', 'Hma1.2p1_0291F.1_g115200' => 'hma', 'Hma1.2p1_0732F.1_g209990' => 'hma', 'Hma1.2p1_0797F.1_g219410' => 'hma', 'HPP92_004377' => 'vpl', 'HPP92_007989' => 'vpl', 'HPP92_023459' => 'vpl', 'HPP92_023473' => 'vpl', 'Lalb_Chr04g0263371' => 'lal', 'Lalb_Chr07g0181051' => 'lal', 'Lalb_Chr08g0244861' => 'lal', 'Lalb_Chr11g0074331' => 'lal', 'Lalb_Chr13g0299551' => 'lal', 'Lalb_Chr14g0375531' => 'lal', 'Lalb_Chr24g0393631' => 'lal', 'Lalb_Chr25g0281171' => 'lal', 'Lj1g0010668' => 'lja', 'Lj3g0028193' => 'lja', 'Lj5C38T14' => 'lonja', 'Lj5g0009631' => 'lja', 'Lj6g0003493' => 'lja', 'Lj7C233T2' => 'lonja', 'Lj8C508T0' => 'lonja', 'Lj8C510T4' => 'lonja', 'Lj9P522T34' => 'lonja', 'Lsat_1_v5_gn_1_37441' => 'lsa', 'Lsat_1_v5_gn_4_93600' => 'lsa', 'Lsat_1_v5_gn_5_135800' => 'lsa', 'Lsat_1_v5_gn_5_141901' => 'lsa', 'Lsat_1_v5_gn_7_60060' => 'lsa', 'Lsat_1_v5_gn_8_99360' => 'lsa', 'Manes.03G038000' => 'mes', 'Manes.03G052400' => 'mes', 'Manes.04G143200' => 'mes', 'Manes.11G021800' => 'mes', 'Manes.16G084100' => 'mes', 'Manes.16G097700' => 'mes', 'MBI13_g11365_MAGBIO' => 'mbi', 'MBI19_g35474_MAGBIO' => 'mbi', 'MD02G1086600' => 'mdo', 'MD08G1069700' => 'mdo', 'MD09G1185600' => 'mdo', 'MD15G1052300' => 'mdo', 'MD15G1213800' => 'mdo', 'MD17G1170300' => 'mdo', 'Medtr1g015275' => 'mtr', 'Medtr3g104880' => 'mtr', 'Medtr4g125620' => 'mtr', 'Medtr8g019660' => 'mtr', 'MELO3C011481.2' => 'cme', 'MELO3C016903.2' => 'cme', 'MELO3C024362.2' => 'cme', 'MELO3C025811.2' => 'cme', 'Migut.A00091' => 'egut', 'Migut.E01574' => 'egut', 'Migut.I01063' => 'egut', 'Migut.J00952' => 'egut', 'Migut.L01544' => 'egut', 'MSTRG.10960' => 'ama', 'MSTRG.11640' => 'ama', 'MSTRG.14063' => 'ama', 'Nitab4.5_0000073g0010' => 'nta', 'Nitab4.5_0001866g0020' => 'nta', 'Nitab4.5_0002072g0060' => 'nta', 'Nitab4.5_0002842g0070' => 'nta', 'Nitab4.5_0002879g0080' => 'nta', 'Nitab4.5_0003670g0010' => 'nta', 'Nitab4.5_0004953g0060' => 'nta', 'Nitab4.5_0009588g0020' => 'nta', 'Nitab4.5_0010890g0020' => 'nta', 'Nn3g17646' => 'nnu', 'Nn6g35590' => 'nnu', 'Oeu002849.1' => 'oeu', 'Oeu003979.1' => 'oeu', 'Oeu007567.1' => 'oeu', 'Oeu010818.1' => 'oeu', 'Oeu022777.1' => 'oeu', 'Oeu027281.1' => 'oeu', 'Oeu027282.1' => 'oeu', 'Oeu029698.1' => 'oeu', 'Oeu049518.1' => 'oeu', 'Oeu051321.1' => 'oeu', 'Oeu058721.1' => 'oeu', 'Oeu063408.1' => 'oeu', 'Peaxi162Scf00038g01811' => 'pax', 'Peaxi162Scf00101g00121' => 'pax', 'Peaxi162Scf00219g00053' => 'pax', 'Peaxi162Scf00498g00065' => 'pax', 'Peaxi162Scf00809g00410' => 'pax', 'PGR031G1119' => 'pgr', 'PGR044G1728' => 'pgr', 'PGR102G0969' => 'pgr', 'PGR119G0990' => 'pgr', 'PGR142G0115' => 'pgr', 'PGSC0003DMG400002570' => 'stu', 'PGSC0003DMG400011607' => 'stu', 'PGSC0003DMG400011608' => 'stu', 'PGSC0003DMG400019573' => 'stu', 'PGSC0003DMG400021740' => 'stu', 'Phvul.001G039400' => 'pvu', 'Phvul.003G132800' => 'pvu', 'Phvul.009G081100' => 'pvu', 'Phvul.010G132500' => 'pvu', 'Potri.001G170500' => 'ptr', 'Potri.003G063400' => 'ptr', 'Potri.006G144700' => 'ptr', 'Potri.006G222700' => 'ptr', 'Potri.018G049900' => 'ptr', 'Potri.018G065000' => 'ptr', 'Prupe.1G406300' => 'ppe', 'Prupe.3G043400' => 'ppe', 'Prupe.7G203200' => 'ppe', 'Psat0s89g0040' => 'psa', 'Psat0s89g0080' => 'psa', 'Psat4g017040' => 'psa', 'Psat4g183280' => 'psa', 'Psat6g022320' => 'psa', 'PSO063G4179' => 'pso', 'PSO210G0965' => 'pso', 'PSO210G7252' => 'pso', 'PSO421G0310' => 'pso', 'QL02p000252' => 'qlo', 'QL02p061086' => 'qlo', 'QL05p008269' => 'qlo', 'RcHm_v2.0_Chr2g0094281' => 'rch', 'RcHm_v2.0_Chr2g0144811' => 'rch', 'RcHm_v2.0_Chr6g0311541' => 'rch', 'Rhsim05G0012700' => 'rsi', 'Rhsim08G0237500' => 'rsi', 'Sabra01G0140700' => 'sbr', 'Sabra01G0140800' => 'sbr', 'Sabra03G0037000' => 'sbr', 'Sabra06G0113200' => 'sbr', 'Sabra06G0114500' => 'sbr', 'Sabra06G0172100' => 'sbr', 'Sabra18G0046900' => 'sbr', 'Sabra18G0057600' => 'sbr', 'SalBow4G1810' => 'sbo', 'SalBow6G0975' => 'sbo', 'SalBow6G6945' => 'sbo', 'SalBow7G2112' => 'sbo', 'Sc08g0008770' => 'sci', 'Sc12g0010520' => 'sci', 'Sc15g0000490' => 'sci', 'Sc23g0004250' => 'sci', 'Sed0001708' => 'sed', 'Sed0006913' => 'sed', 'Sed0010087' => 'sed', 'Sed0012607' => 'sed', 'Sed0014419' => 'sed', 'Sed0017598' => 'sed', 'Sed0027990' => 'sed', 'SEGI_11407' => 'sgi', 'SEGI_36444' => 'sgi', 'SGA_v2.0_scaffold163G38002' => 'sas', 'SGA_v2.0_scaffold20G09177' => 'sas', 'SGA_v2.0_scaffold21G09472' => 'sas', 'SGA_v2.0_scaffold64G21860' => 'sas', 'SGA_v2.0_scaffold71G23864' => 'sas', 'SGA_v2.0_scaffold97G29150' => 'sas', 'SHI18834' => 'shi', 'Solyc03g121970.1' => 'sly', 'Solyc07g041290.3' => 'sly', 'Solyc08g062180.3' => 'sly', 'Solyc12g049255.1' => 'sly', 'Sopen03g040790' => 'spe', 'Sopen07g020600' => 'spe', 'Sopen08g017750' => 'spe', 'Sopen12g023740' => 'spe', 'Sp3g12230' => 'spa', 'Sp6g31550' => 'spa', 'SpUn0007_0150' => 'spa', 'SpUn0013_0010' => 'spa', 'TAR383G0478' => 'tar', 'TAR624G1410' => 'tar', 'TAR626G0456' => 'tar', 'THA.LOC104799149' => 'tha', 'THA.LOC104803702' => 'tha', 'THA.LOC104811003' => 'tha', 'THA.LOC104815629' => 'tha', 'THA.LOC104822656' => 'tha', 'Thecc.06G118100' => 'tca', 'Thecc.09G061200' => 'tca', 'Thecc.09G081100' => 'tca', 'Thhalv10012317m.g' => 'esa', 'Thhalv10013873m.g' => 'esa', 'Thhalv10022002m.g' => 'esa', 'TPR.G16451' => 'tpr', 'TPR.G3574' => 'tpr', 'TPR.G38875' => 'tpr', 'TPR.G9464' => 'tpr', 'TWI31G0706' => 'twi', 'TWI32G0026' => 'twi', 'TWI32G0337' => 'twi', 'TWI34G1323' => 'twi', 'TWI63G0114' => 'twi', 'TWI75G1417' => 'twi', 'unitig_32.g11566' => 'ugi', 'unitig_748.g7466' => 'ugi', 'unitig_748.g7533' => 'ugi', 'unitig_749.g14235' => 'ugi', 'vmacro15021' => 'vma', 'vmacro17175' => 'vma', 'VMungo0331G1191' => 'vmu', 'VMungo0647G0706' => 'vmu', 'VMungo1215G1300' => 'vmu', 'VMungo1309G2463' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001488' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001488' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001488' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001488' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001488', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '426', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39640' => 'bna', 'A02p01350' => 'bna', 'A05p35430' => 'bna', 'A06p00470' => 'bna', 'A08p01130' => 'bna', 'A10p25720' => 'bna', 'Aa31LG10G1240' => 'aar', 'Aa31LG3G15180' => 'aar', 'Aa31LG4G13280' => 'aar', 'Aa31LG8G1180' => 'aar', 'Actinidia03307' => 'ach', 'Actinidia21787' => 'ach', 'Actinidia25699' => 'ach', 'Actinidia27576' => 'ach', 'Actinidia32178' => 'ach', 'Actinidia39685' => 'ach', 'Ah.08g216680' => 'amhyb', 'Ah.10g033990' => 'amhyb', 'AL1G62910' => 'aly', 'AL3G26180' => 'aly', 'AL5G21160' => 'aly', 'AL6G22840' => 'aly', 'Aqoxy1G01010' => 'aox', 'Aqoxy4G01396' => 'aox', 'Aqoxy7G01095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1030I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N5SZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62UK56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8XJ49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3VH7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HX0TR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S358VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVA0C2' => 'arhy', 'AT1G54200' => 'ath', 'AT3G13980' => 'ath', 'AT3G42800' => 'ath', 'AT5G12050' => 'ath', 'ATR0598G179' => 'atr', 'Atru.chr1.3909' => 'acertr', 'Atru.chr7.1663' => 'acertr', 'Atru.chr7.1866' => 'acertr', 'AUR62001497' => 'cqu', 'AUR62009095' => 'cqu', 'AUR62009873' => 'cqu', 'AUR62020576' => 'cqu', 'AUR62028996' => 'cqu', 'BcaB01g05432' => 'bca', 'BcaB04g17017' => 'bca', 'BcaB04g20965' => 'bca', 'BcaB06g25413' => 'bca', 'BcaB07g33247' => 'bca', 'BcaC01g01441' => 'bca', 'BcaC03g13409' => 'bca', 'BcaC05g29134' => 'bca', 'BcaC08g43599' => 'bca', 'BcaC09g48386' => 'bca', 'BcaNung02630' => 'bca', 'BolC1t05011H' => 'bol', 'BolC2t06503H' => 'bol', 'BolC3t13127H' => 'bol', 'BolC3t21524H' => 'bol', 'BolC5t34042H' => 'bol', 'BolC6t36070H' => 'bol', 'BolC9t59310H' => 'bol', 'BraA01t04005Z' => 'bra', 'BraA02t05114Z' => 'bra', 'BraA03t09876Z' => 'bra', 'BraA05t22353Z' => 'bra', 'BraA06t23261Z' => 'bra', 'BraA08t32167Z' => 'bra', 'BraA10t44637Z' => 'bra', 'C01p50620' => 'bna', 'C02p05590' => 'bna', 'C03p06200' => 'bna', 'C03p92070' => 'bna', 'C05p53720' => 'bna', 'C06p09970' => 'bna', 'C09p64790' => 'bna', 'CAN.G1387.3' => 'can', 'CAN.G1387.5' => 'can', 'CANSAT25G3298' => 'cansat', 'CANSAT56G0195' => 'cansat', 'CANSAT56G4431' => 'cansat', 'CARHR044570' => 'chi', 'CARHR088800' => 'chi', 'CARHR153760' => 'chi', 'CARHR201080' => 'chi', 'Carub.0001s4343' => 'cru', 'Carub.0003s1356' => 'cru', 'Carub.0005s0885' => 'cru', 'Carub.0006s1057' => 'cru', 'Ca_13105_v3' => 'car', 'Ca_15839_v3' => 'car', 'Cc04_g01440' => 'ccan', 'Cc06_g11890' => 'ccan', 'Cc08_g01330' => 'ccan', 'CDE05G0831' => 'cde', 'CDE05G3396' => 'cde', 'CDE10G0469' => 'cde', 'CDE11G0090' => 'cde', 'Cfa003031' => 'cfa', 'Cfa003543' => 'cfa', 'Cfa011880' => 'cfa', 'Cfa018007' => 'cfa', 'Ciclev10008257m.g' => 'ccl', 'Ciclev10008758m.g' => 'ccl', 'Ciclev10025682m.g' => 'ccl', 'CiPaw.01G220600' => 'cil', 'CiPaw.02G136700' => 'cil', 'CiPaw.03G210100' => 'cil', 'CiPaw.04G146700' => 'cil', 'CiPaw.10G053700' => 'cil', 'CiPaw.15G090100' => 'cil', 'ClCG05G015630' => 'cla', 'ClCG07G013990' => 'cla', 'ClCG08G009900' => 'cla', 'ClCG09G000910' => 'cla', 'COL.COLO4_18134' => 'col', 'COL.COLO4_21120' => 'col', 'COL.COLO4_30774' => 'col', 'Cpa.g.sc126.40' => 'cpa', 'Cpa.g.sc25.102' => 'cpa', 'Cpa.g.sc28.87' => 'cpa', 'CsaV3_3G043550' => 'csa', 'CsaV3_4G035960' => 'csa', 'CsaV3_6G032000' => 'csa', 'CsaV3_7G034550' => 'csa', 'CSS0004414' => 'camsi', 'CSS0039321' => 'camsi', 'DCAR_007642' => 'dca', 'DCAR_022698' => 'dca', 'DCAR_026410' => 'dca', 'DCAR_028288' => 'dca', 'Dinv04028' => 'din', 'Dinv04257' => 'din', 'Dinv10389' => 'din', 'Dinv25581' => 'din', 'Dinv37875' => 'din', 'Dinv41833' => 'din', 'Dinv42369' => 'din', 'Dinv44677' => 'din', 'Duzib150G0073' => 'dzi', 'Duzib150G1066' => 'dzi', 'Duzib160G0588' => 'dzi', 'Duzib168G0244' => 'dzi', 'Duzib168G1997' => 'dzi', 'Duzib187G1785' => 'dzi', 'Duzib187G1885' => 'dzi', 'Duzib192G0094' => 'dzi', 'Duzib235G0516' => 'dzi', 'ECA236G0014' => 'eca', 'ECA240G4202' => 'eca', 'ECA247G0079' => 'eca', 'EL10Ac2g03800' => 'bvu', 'EL10Ac7g16397' => 'bvu', 'EL10Ac8g19131' => 'bvu', 'Eucgr.C00707' => 'egr', 'Eucgr.C03147' => 'egr', 'Eucgr.F03172' => 'egr', 'Eucgr.J02829' => 'egr', 'FAN02G1354' => 'fan', 'FAN05G4431' => 'fan', 'FAN09G3059' => 'fan', 'FAN14G3952' => 'fan', 'FAN15G1669' => 'fan', 'FAN19G1765' => 'fan', 'FAN20G1484' => 'fan', 'FAN23G0146' => 'fan', 'FAN24G0924' => 'fan', 'FAN26G0348' => 'fan', 'FAN26G2822' => 'fan', 'FAN27G1098' => 'fan', 'FAN28G0322' => 'fan', 'FAN28G2908' => 'fan', 'FvH4_1g08230' => 'fve', 'FvH4_2g31260' => 'fve', 'FvH4_6g34500' => 'fve', 'Glyma.04G055100' => 'gma', 'Glyma.06G055200' => 'gma', 'Glyma.07G036700' => 'gma', 'Glyma.13G108300' => 'gma', 'Glyma.14G099400' => 'gma', 'Glyma.16G006100' => 'gma', 'Glyma.17G051100' => 'gma', 'Glyma.17G225300' => 'gma', 'Gohir.A05G039500' => 'ghi', 'Gohir.A05G137600' => 'ghi', 'Gohir.A05G406200' => 'ghi', 'Gohir.A06G075300' => 'ghi', 'Gohir.A06G083100' => 'ghi', 'Gohir.A07G020501' => 'ghi', 'Gohir.A10G052900' => 'ghi', 'Gohir.D04G009400' => 'ghi', 'Gohir.D05G041000' => 'ghi', 'Gohir.D05G139700' => 'ghi', 'Gohir.D06G074100' => 'ghi', 'Gohir.D06G083800' => 'ghi', 'Gohir.D07G020200' => 'ghi', 'Gohir.D10G054700' => 'ghi', 'Gorai.001G021000' => 'gra', 'Gorai.009G041500' => 'gra', 'Gorai.009G144000' => 'gra', 'Gorai.010G086600' => 'gra', 'Gorai.010G097300' => 'gra', 'Gorai.011G058200' => 'gra', 'Gorai.012G011300' => 'gra', 'GSVIVG01015116001' => 'vvi', 'GSVIVG01016780001' => 'vvi', 'HanXRQChr03g0069531' => 'han', 'HanXRQChr04g0094821' => 'han', 'HanXRQChr05g0139531' => 'han', 'HanXRQChr06g0182641' => 'han', 'HanXRQChr09g0276771' => 'han', 'HanXRQChr10g0312441' => 'han', 'HanXRQChr10g0319591' => 'han', 'HanXRQChr15g0497071' => 'han', 'HanXRQChr16g0532421' => 'han', 'Haze_16017' => 'cav', 'Haze_18123' => 'cav', 'Haze_25969' => 'cav', 'Hma1.2p1_0291F.1_g115200' => 'hma', 'Hma1.2p1_0732F.1_g209990' => 'hma', 'Hma1.2p1_0797F.1_g219410' => 'hma', 'HPP92_004377' => 'vpl', 'HPP92_007989' => 'vpl', 'HPP92_023459' => 'vpl', 'HPP92_023473' => 'vpl', 'Lalb_Chr04g0263371' => 'lal', 'Lalb_Chr07g0181051' => 'lal', 'Lalb_Chr08g0244861' => 'lal', 'Lalb_Chr11g0074331' => 'lal', 'Lalb_Chr13g0299551' => 'lal', 'Lalb_Chr14g0375531' => 'lal', 'Lalb_Chr24g0393631' => 'lal', 'Lalb_Chr25g0281171' => 'lal', 'Lj1g0010668' => 'lja', 'Lj3g0028193' => 'lja', 'Lj5C38T14' => 'lonja', 'Lj5g0009631' => 'lja', 'Lj6g0003493' => 'lja', 'Lj7C233T2' => 'lonja', 'Lj8C508T0' => 'lonja', 'Lj8C510T4' => 'lonja', 'Lj9P522T34' => 'lonja', 'Lsat_1_v5_gn_1_37441' => 'lsa', 'Lsat_1_v5_gn_4_93600' => 'lsa', 'Lsat_1_v5_gn_5_135800' => 'lsa', 'Lsat_1_v5_gn_5_141901' => 'lsa', 'Lsat_1_v5_gn_7_60060' => 'lsa', 'Lsat_1_v5_gn_8_99360' => 'lsa', 'Manes.03G038000' => 'mes', 'Manes.03G052400' => 'mes', 'Manes.04G143200' => 'mes', 'Manes.11G021800' => 'mes', 'Manes.16G084100' => 'mes', 'Manes.16G097700' => 'mes', 'MBI13_g11365_MAGBIO' => 'mbi', 'MBI19_g35474_MAGBIO' => 'mbi', 'MD02G1086600' => 'mdo', 'MD08G1069700' => 'mdo', 'MD09G1185600' => 'mdo', 'MD15G1052300' => 'mdo', 'MD15G1213800' => 'mdo', 'MD17G1170300' => 'mdo', 'Medtr1g015275' => 'mtr', 'Medtr3g104880' => 'mtr', 'Medtr4g125620' => 'mtr', 'Medtr8g019660' => 'mtr', 'MELO3C011481.2' => 'cme', 'MELO3C016903.2' => 'cme', 'MELO3C024362.2' => 'cme', 'MELO3C025811.2' => 'cme', 'Migut.A00091' => 'egut', 'Migut.E01574' => 'egut', 'Migut.I01063' => 'egut', 'Migut.J00952' => 'egut', 'Migut.L01544' => 'egut', 'MSTRG.10960' => 'ama', 'MSTRG.11640' => 'ama', 'MSTRG.14063' => 'ama', 'Nitab4.5_0000073g0010' => 'nta', 'Nitab4.5_0001866g0020' => 'nta', 'Nitab4.5_0002072g0060' => 'nta', 'Nitab4.5_0002842g0070' => 'nta', 'Nitab4.5_0002879g0080' => 'nta', 'Nitab4.5_0003670g0010' => 'nta', 'Nitab4.5_0004953g0060' => 'nta', 'Nitab4.5_0009588g0020' => 'nta', 'Nitab4.5_0010890g0020' => 'nta', 'Nn3g17646' => 'nnu', 'Nn6g35590' => 'nnu', 'Oeu002849.1' => 'oeu', 'Oeu003979.1' => 'oeu', 'Oeu007567.1' => 'oeu', 'Oeu010818.1' => 'oeu', 'Oeu022777.1' => 'oeu', 'Oeu027281.1' => 'oeu', 'Oeu027282.1' => 'oeu', 'Oeu029698.1' => 'oeu', 'Oeu049518.1' => 'oeu', 'Oeu051321.1' => 'oeu', 'Oeu058721.1' => 'oeu', 'Oeu063408.1' => 'oeu', 'Peaxi162Scf00038g01811' => 'pax', 'Peaxi162Scf00101g00121' => 'pax', 'Peaxi162Scf00219g00053' => 'pax', 'Peaxi162Scf00498g00065' => 'pax', 'Peaxi162Scf00809g00410' => 'pax', 'PGR031G1119' => 'pgr', 'PGR044G1728' => 'pgr', 'PGR102G0969' => 'pgr', 'PGR119G0990' => 'pgr', 'PGR142G0115' => 'pgr', 'PGSC0003DMG400002570' => 'stu', 'PGSC0003DMG400011607' => 'stu', 'PGSC0003DMG400011608' => 'stu', 'PGSC0003DMG400019573' => 'stu', 'PGSC0003DMG400021740' => 'stu', 'Phvul.001G039400' => 'pvu', 'Phvul.003G132800' => 'pvu', 'Phvul.009G081100' => 'pvu', 'Phvul.010G132500' => 'pvu', 'Potri.001G170500' => 'ptr', 'Potri.003G063400' => 'ptr', 'Potri.006G144700' => 'ptr', 'Potri.006G222700' => 'ptr', 'Potri.018G049900' => 'ptr', 'Potri.018G065000' => 'ptr', 'Prupe.1G406300' => 'ppe', 'Prupe.3G043400' => 'ppe', 'Prupe.7G203200' => 'ppe', 'Psat0s89g0040' => 'psa', 'Psat0s89g0080' => 'psa', 'Psat4g017040' => 'psa', 'Psat4g183280' => 'psa', 'Psat6g022320' => 'psa', 'PSO063G4179' => 'pso', 'PSO210G0965' => 'pso', 'PSO210G7252' => 'pso', 'PSO421G0310' => 'pso', 'QL02p000252' => 'qlo', 'QL02p061086' => 'qlo', 'QL05p008269' => 'qlo', 'RcHm_v2.0_Chr2g0094281' => 'rch', 'RcHm_v2.0_Chr2g0144811' => 'rch', 'RcHm_v2.0_Chr6g0311541' => 'rch', 'Rhsim05G0012700' => 'rsi', 'Rhsim08G0237500' => 'rsi', 'Sabra01G0140700' => 'sbr', 'Sabra01G0140800' => 'sbr', 'Sabra03G0037000' => 'sbr', 'Sabra06G0113200' => 'sbr', 'Sabra06G0114500' => 'sbr', 'Sabra06G0172100' => 'sbr', 'Sabra18G0046900' => 'sbr', 'Sabra18G0057600' => 'sbr', 'SalBow4G1810' => 'sbo', 'SalBow6G0975' => 'sbo', 'SalBow6G6945' => 'sbo', 'SalBow7G2112' => 'sbo', 'Sc08g0008770' => 'sci', 'Sc12g0010520' => 'sci', 'Sc15g0000490' => 'sci', 'Sc23g0004250' => 'sci', 'Sed0001708' => 'sed', 'Sed0006913' => 'sed', 'Sed0010087' => 'sed', 'Sed0012607' => 'sed', 'Sed0014419' => 'sed', 'Sed0017598' => 'sed', 'Sed0027990' => 'sed', 'SEGI_11407' => 'sgi', 'SEGI_36444' => 'sgi', 'SGA_v2.0_scaffold163G38002' => 'sas', 'SGA_v2.0_scaffold20G09177' => 'sas', 'SGA_v2.0_scaffold21G09472' => 'sas', 'SGA_v2.0_scaffold64G21860' => 'sas', 'SGA_v2.0_scaffold71G23864' => 'sas', 'SGA_v2.0_scaffold97G29150' => 'sas', 'SHI18834' => 'shi', 'Solyc03g121970.1' => 'sly', 'Solyc07g041290.3' => 'sly', 'Solyc08g062180.3' => 'sly', 'Solyc12g049255.1' => 'sly', 'Sopen03g040790' => 'spe', 'Sopen07g020600' => 'spe', 'Sopen08g017750' => 'spe', 'Sopen12g023740' => 'spe', 'Sp3g12230' => 'spa', 'Sp6g31550' => 'spa', 'SpUn0007_0150' => 'spa', 'SpUn0013_0010' => 'spa', 'TAR383G0478' => 'tar', 'TAR624G1410' => 'tar', 'TAR626G0456' => 'tar', 'THA.LOC104799149' => 'tha', 'THA.LOC104803702' => 'tha', 'THA.LOC104811003' => 'tha', 'THA.LOC104815629' => 'tha', 'THA.LOC104822656' => 'tha', 'Thecc.06G118100' => 'tca', 'Thecc.09G061200' => 'tca', 'Thecc.09G081100' => 'tca', 'Thhalv10012317m.g' => 'esa', 'Thhalv10013873m.g' => 'esa', 'Thhalv10022002m.g' => 'esa', 'TPR.G16451' => 'tpr', 'TPR.G3574' => 'tpr', 'TPR.G38875' => 'tpr', 'TPR.G9464' => 'tpr', 'TWI31G0706' => 'twi', 'TWI32G0026' => 'twi', 'TWI32G0337' => 'twi', 'TWI34G1323' => 'twi', 'TWI63G0114' => 'twi', 'TWI75G1417' => 'twi', 'unitig_32.g11566' => 'ugi', 'unitig_748.g7466' => 'ugi', 'unitig_748.g7533' => 'ugi', 'unitig_749.g14235' => 'ugi', 'vmacro15021' => 'vma', 'vmacro17175' => 'vma', 'VMungo0331G1191' => 'vmu', 'VMungo0647G0706' => 'vmu', 'VMungo1215G1300' => 'vmu', 'VMungo1309G2463' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001488', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001488' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001488', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '426', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001488' ) ), 'genes' => array( 'A01p39640' => 'bna', 'A02p01350' => 'bna', 'A05p35430' => 'bna', 'A06p00470' => 'bna', 'A08p01130' => 'bna', 'A10p25720' => 'bna', 'Aa31LG10G1240' => 'aar', 'Aa31LG3G15180' => 'aar', 'Aa31LG4G13280' => 'aar', 'Aa31LG8G1180' => 'aar', 'Actinidia03307' => 'ach', 'Actinidia21787' => 'ach', 'Actinidia25699' => 'ach', 'Actinidia27576' => 'ach', 'Actinidia32178' => 'ach', 'Actinidia39685' => 'ach', 'Ah.08g216680' => 'amhyb', 'Ah.10g033990' => 'amhyb', 'AL1G62910' => 'aly', 'AL3G26180' => 'aly', 'AL5G21160' => 'aly', 'AL6G22840' => 'aly', 'Aqoxy1G01010' => 'aox', 'Aqoxy4G01396' => 'aox', 'Aqoxy7G01095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1030I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N5SZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62UK56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8XJ49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3VH7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HX0TR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S358VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVA0C2' => 'arhy', 'AT1G54200' => 'ath', 'AT3G13980' => 'ath', 'AT3G42800' => 'ath', 'AT5G12050' => 'ath', 'ATR0598G179' => 'atr', 'Atru.chr1.3909' => 'acertr', 'Atru.chr7.1663' => 'acertr', 'Atru.chr7.1866' => 'acertr', 'AUR62001497' => 'cqu', 'AUR62009095' => 'cqu', 'AUR62009873' => 'cqu', 'AUR62020576' => 'cqu', 'AUR62028996' => 'cqu', 'BcaB01g05432' => 'bca', 'BcaB04g17017' => 'bca', 'BcaB04g20965' => 'bca', 'BcaB06g25413' => 'bca', 'BcaB07g33247' => 'bca', 'BcaC01g01441' => 'bca', 'BcaC03g13409' => 'bca', 'BcaC05g29134' => 'bca', 'BcaC08g43599' => 'bca', 'BcaC09g48386' => 'bca', 'BcaNung02630' => 'bca', 'BolC1t05011H' => 'bol', 'BolC2t06503H' => 'bol', 'BolC3t13127H' => 'bol', 'BolC3t21524H' => 'bol', 'BolC5t34042H' => 'bol', 'BolC6t36070H' => 'bol', 'BolC9t59310H' => 'bol', 'BraA01t04005Z' => 'bra', 'BraA02t05114Z' => 'bra', 'BraA03t09876Z' => 'bra', 'BraA05t22353Z' => 'bra', 'BraA06t23261Z' => 'bra', 'BraA08t32167Z' => 'bra', 'BraA10t44637Z' => 'bra', 'C01p50620' => 'bna', 'C02p05590' => 'bna', 'C03p06200' => 'bna', 'C03p92070' => 'bna', 'C05p53720' => 'bna', 'C06p09970' => 'bna', 'C09p64790' => 'bna', 'CAN.G1387.3' => 'can', 'CAN.G1387.5' => 'can', 'CANSAT25G3298' => 'cansat', 'CANSAT56G0195' => 'cansat', 'CANSAT56G4431' => 'cansat', 'CARHR044570' => 'chi', 'CARHR088800' => 'chi', 'CARHR153760' => 'chi', 'CARHR201080' => 'chi', 'Carub.0001s4343' => 'cru', 'Carub.0003s1356' => 'cru', 'Carub.0005s0885' => 'cru', 'Carub.0006s1057' => 'cru', 'Ca_13105_v3' => 'car', 'Ca_15839_v3' => 'car', 'Cc04_g01440' => 'ccan', 'Cc06_g11890' => 'ccan', 'Cc08_g01330' => 'ccan', 'CDE05G0831' => 'cde', 'CDE05G3396' => 'cde', 'CDE10G0469' => 'cde', 'CDE11G0090' => 'cde', 'Cfa003031' => 'cfa', 'Cfa003543' => 'cfa', 'Cfa011880' => 'cfa', 'Cfa018007' => 'cfa', 'Ciclev10008257m.g' => 'ccl', 'Ciclev10008758m.g' => 'ccl', 'Ciclev10025682m.g' => 'ccl', 'CiPaw.01G220600' => 'cil', 'CiPaw.02G136700' => 'cil', 'CiPaw.03G210100' => 'cil', 'CiPaw.04G146700' => 'cil', 'CiPaw.10G053700' => 'cil', 'CiPaw.15G090100' => 'cil', 'ClCG05G015630' => 'cla', 'ClCG07G013990' => 'cla', 'ClCG08G009900' => 'cla', 'ClCG09G000910' => 'cla', 'COL.COLO4_18134' => 'col', 'COL.COLO4_21120' => 'col', 'COL.COLO4_30774' => 'col', 'Cpa.g.sc126.40' => 'cpa', 'Cpa.g.sc25.102' => 'cpa', 'Cpa.g.sc28.87' => 'cpa', 'CsaV3_3G043550' => 'csa', 'CsaV3_4G035960' => 'csa', 'CsaV3_6G032000' => 'csa', 'CsaV3_7G034550' => 'csa', 'CSS0004414' => 'camsi', 'CSS0039321' => 'camsi', 'DCAR_007642' => 'dca', 'DCAR_022698' => 'dca', 'DCAR_026410' => 'dca', 'DCAR_028288' => 'dca', 'Dinv04028' => 'din', 'Dinv04257' => 'din', 'Dinv10389' => 'din', 'Dinv25581' => 'din', 'Dinv37875' => 'din', 'Dinv41833' => 'din', 'Dinv42369' => 'din', 'Dinv44677' => 'din', 'Duzib150G0073' => 'dzi', 'Duzib150G1066' => 'dzi', 'Duzib160G0588' => 'dzi', 'Duzib168G0244' => 'dzi', 'Duzib168G1997' => 'dzi', 'Duzib187G1785' => 'dzi', 'Duzib187G1885' => 'dzi', 'Duzib192G0094' => 'dzi', 'Duzib235G0516' => 'dzi', 'ECA236G0014' => 'eca', 'ECA240G4202' => 'eca', 'ECA247G0079' => 'eca', 'EL10Ac2g03800' => 'bvu', 'EL10Ac7g16397' => 'bvu', 'EL10Ac8g19131' => 'bvu', 'Eucgr.C00707' => 'egr', 'Eucgr.C03147' => 'egr', 'Eucgr.F03172' => 'egr', 'Eucgr.J02829' => 'egr', 'FAN02G1354' => 'fan', 'FAN05G4431' => 'fan', 'FAN09G3059' => 'fan', 'FAN14G3952' => 'fan', 'FAN15G1669' => 'fan', 'FAN19G1765' => 'fan', 'FAN20G1484' => 'fan', 'FAN23G0146' => 'fan', 'FAN24G0924' => 'fan', 'FAN26G0348' => 'fan', 'FAN26G2822' => 'fan', 'FAN27G1098' => 'fan', 'FAN28G0322' => 'fan', 'FAN28G2908' => 'fan', 'FvH4_1g08230' => 'fve', 'FvH4_2g31260' => 'fve', 'FvH4_6g34500' => 'fve', 'Glyma.04G055100' => 'gma', 'Glyma.06G055200' => 'gma', 'Glyma.07G036700' => 'gma', 'Glyma.13G108300' => 'gma', 'Glyma.14G099400' => 'gma', 'Glyma.16G006100' => 'gma', 'Glyma.17G051100' => 'gma', 'Glyma.17G225300' => 'gma', 'Gohir.A05G039500' => 'ghi', 'Gohir.A05G137600' => 'ghi', 'Gohir.A05G406200' => 'ghi', 'Gohir.A06G075300' => 'ghi', 'Gohir.A06G083100' => 'ghi', 'Gohir.A07G020501' => 'ghi', 'Gohir.A10G052900' => 'ghi', 'Gohir.D04G009400' => 'ghi', 'Gohir.D05G041000' => 'ghi', 'Gohir.D05G139700' => 'ghi', 'Gohir.D06G074100' => 'ghi', 'Gohir.D06G083800' => 'ghi', 'Gohir.D07G020200' => 'ghi', 'Gohir.D10G054700' => 'ghi', 'Gorai.001G021000' => 'gra', 'Gorai.009G041500' => 'gra', 'Gorai.009G144000' => 'gra', 'Gorai.010G086600' => 'gra', 'Gorai.010G097300' => 'gra', 'Gorai.011G058200' => 'gra', 'Gorai.012G011300' => 'gra', 'GSVIVG01015116001' => 'vvi', 'GSVIVG01016780001' => 'vvi', 'HanXRQChr03g0069531' => 'han', 'HanXRQChr04g0094821' => 'han', 'HanXRQChr05g0139531' => 'han', 'HanXRQChr06g0182641' => 'han', 'HanXRQChr09g0276771' => 'han', 'HanXRQChr10g0312441' => 'han', 'HanXRQChr10g0319591' => 'han', 'HanXRQChr15g0497071' => 'han', 'HanXRQChr16g0532421' => 'han', 'Haze_16017' => 'cav', 'Haze_18123' => 'cav', 'Haze_25969' => 'cav', 'Hma1.2p1_0291F.1_g115200' => 'hma', 'Hma1.2p1_0732F.1_g209990' => 'hma', 'Hma1.2p1_0797F.1_g219410' => 'hma', 'HPP92_004377' => 'vpl', 'HPP92_007989' => 'vpl', 'HPP92_023459' => 'vpl', 'HPP92_023473' => 'vpl', 'Lalb_Chr04g0263371' => 'lal', 'Lalb_Chr07g0181051' => 'lal', 'Lalb_Chr08g0244861' => 'lal', 'Lalb_Chr11g0074331' => 'lal', 'Lalb_Chr13g0299551' => 'lal', 'Lalb_Chr14g0375531' => 'lal', 'Lalb_Chr24g0393631' => 'lal', 'Lalb_Chr25g0281171' => 'lal', 'Lj1g0010668' => 'lja', 'Lj3g0028193' => 'lja', 'Lj5C38T14' => 'lonja', 'Lj5g0009631' => 'lja', 'Lj6g0003493' => 'lja', 'Lj7C233T2' => 'lonja', 'Lj8C508T0' => 'lonja', 'Lj8C510T4' => 'lonja', 'Lj9P522T34' => 'lonja', 'Lsat_1_v5_gn_1_37441' => 'lsa', 'Lsat_1_v5_gn_4_93600' => 'lsa', 'Lsat_1_v5_gn_5_135800' => 'lsa', 'Lsat_1_v5_gn_5_141901' => 'lsa', 'Lsat_1_v5_gn_7_60060' => 'lsa', 'Lsat_1_v5_gn_8_99360' => 'lsa', 'Manes.03G038000' => 'mes', 'Manes.03G052400' => 'mes', 'Manes.04G143200' => 'mes', 'Manes.11G021800' => 'mes', 'Manes.16G084100' => 'mes', 'Manes.16G097700' => 'mes', 'MBI13_g11365_MAGBIO' => 'mbi', 'MBI19_g35474_MAGBIO' => 'mbi', 'MD02G1086600' => 'mdo', 'MD08G1069700' => 'mdo', 'MD09G1185600' => 'mdo', 'MD15G1052300' => 'mdo', 'MD15G1213800' => 'mdo', 'MD17G1170300' => 'mdo', 'Medtr1g015275' => 'mtr', 'Medtr3g104880' => 'mtr', 'Medtr4g125620' => 'mtr', 'Medtr8g019660' => 'mtr', 'MELO3C011481.2' => 'cme', 'MELO3C016903.2' => 'cme', 'MELO3C024362.2' => 'cme', 'MELO3C025811.2' => 'cme', 'Migut.A00091' => 'egut', 'Migut.E01574' => 'egut', 'Migut.I01063' => 'egut', 'Migut.J00952' => 'egut', 'Migut.L01544' => 'egut', 'MSTRG.10960' => 'ama', 'MSTRG.11640' => 'ama', 'MSTRG.14063' => 'ama', 'Nitab4.5_0000073g0010' => 'nta', 'Nitab4.5_0001866g0020' => 'nta', 'Nitab4.5_0002072g0060' => 'nta', 'Nitab4.5_0002842g0070' => 'nta', 'Nitab4.5_0002879g0080' => 'nta', 'Nitab4.5_0003670g0010' => 'nta', 'Nitab4.5_0004953g0060' => 'nta', 'Nitab4.5_0009588g0020' => 'nta', 'Nitab4.5_0010890g0020' => 'nta', 'Nn3g17646' => 'nnu', 'Nn6g35590' => 'nnu', 'Oeu002849.1' => 'oeu', 'Oeu003979.1' => 'oeu', 'Oeu007567.1' => 'oeu', 'Oeu010818.1' => 'oeu', 'Oeu022777.1' => 'oeu', 'Oeu027281.1' => 'oeu', 'Oeu027282.1' => 'oeu', 'Oeu029698.1' => 'oeu', 'Oeu049518.1' => 'oeu', 'Oeu051321.1' => 'oeu', 'Oeu058721.1' => 'oeu', 'Oeu063408.1' => 'oeu', 'Peaxi162Scf00038g01811' => 'pax', 'Peaxi162Scf00101g00121' => 'pax', 'Peaxi162Scf00219g00053' => 'pax', 'Peaxi162Scf00498g00065' => 'pax', 'Peaxi162Scf00809g00410' => 'pax', 'PGR031G1119' => 'pgr', 'PGR044G1728' => 'pgr', 'PGR102G0969' => 'pgr', 'PGR119G0990' => 'pgr', 'PGR142G0115' => 'pgr', 'PGSC0003DMG400002570' => 'stu', 'PGSC0003DMG400011607' => 'stu', 'PGSC0003DMG400011608' => 'stu', 'PGSC0003DMG400019573' => 'stu', 'PGSC0003DMG400021740' => 'stu', 'Phvul.001G039400' => 'pvu', 'Phvul.003G132800' => 'pvu', 'Phvul.009G081100' => 'pvu', 'Phvul.010G132500' => 'pvu', 'Potri.001G170500' => 'ptr', 'Potri.003G063400' => 'ptr', 'Potri.006G144700' => 'ptr', 'Potri.006G222700' => 'ptr', 'Potri.018G049900' => 'ptr', 'Potri.018G065000' => 'ptr', 'Prupe.1G406300' => 'ppe', 'Prupe.3G043400' => 'ppe', 'Prupe.7G203200' => 'ppe', 'Psat0s89g0040' => 'psa', 'Psat0s89g0080' => 'psa', 'Psat4g017040' => 'psa', 'Psat4g183280' => 'psa', 'Psat6g022320' => 'psa', 'PSO063G4179' => 'pso', 'PSO210G0965' => 'pso', 'PSO210G7252' => 'pso', 'PSO421G0310' => 'pso', 'QL02p000252' => 'qlo', 'QL02p061086' => 'qlo', 'QL05p008269' => 'qlo', 'RcHm_v2.0_Chr2g0094281' => 'rch', 'RcHm_v2.0_Chr2g0144811' => 'rch', 'RcHm_v2.0_Chr6g0311541' => 'rch', 'Rhsim05G0012700' => 'rsi', 'Rhsim08G0237500' => 'rsi', 'Sabra01G0140700' => 'sbr', 'Sabra01G0140800' => 'sbr', 'Sabra03G0037000' => 'sbr', 'Sabra06G0113200' => 'sbr', 'Sabra06G0114500' => 'sbr', 'Sabra06G0172100' => 'sbr', 'Sabra18G0046900' => 'sbr', 'Sabra18G0057600' => 'sbr', 'SalBow4G1810' => 'sbo', 'SalBow6G0975' => 'sbo', 'SalBow6G6945' => 'sbo', 'SalBow7G2112' => 'sbo', 'Sc08g0008770' => 'sci', 'Sc12g0010520' => 'sci', 'Sc15g0000490' => 'sci', 'Sc23g0004250' => 'sci', 'Sed0001708' => 'sed', 'Sed0006913' => 'sed', 'Sed0010087' => 'sed', 'Sed0012607' => 'sed', 'Sed0014419' => 'sed', 'Sed0017598' => 'sed', 'Sed0027990' => 'sed', 'SEGI_11407' => 'sgi', 'SEGI_36444' => 'sgi', 'SGA_v2.0_scaffold163G38002' => 'sas', 'SGA_v2.0_scaffold20G09177' => 'sas', 'SGA_v2.0_scaffold21G09472' => 'sas', 'SGA_v2.0_scaffold64G21860' => 'sas', 'SGA_v2.0_scaffold71G23864' => 'sas', 'SGA_v2.0_scaffold97G29150' => 'sas', 'SHI18834' => 'shi', 'Solyc03g121970.1' => 'sly', 'Solyc07g041290.3' => 'sly', 'Solyc08g062180.3' => 'sly', 'Solyc12g049255.1' => 'sly', 'Sopen03g040790' => 'spe', 'Sopen07g020600' => 'spe', 'Sopen08g017750' => 'spe', 'Sopen12g023740' => 'spe', 'Sp3g12230' => 'spa', 'Sp6g31550' => 'spa', 'SpUn0007_0150' => 'spa', 'SpUn0013_0010' => 'spa', 'TAR383G0478' => 'tar', 'TAR624G1410' => 'tar', 'TAR626G0456' => 'tar', 'THA.LOC104799149' => 'tha', 'THA.LOC104803702' => 'tha', 'THA.LOC104811003' => 'tha', 'THA.LOC104815629' => 'tha', 'THA.LOC104822656' => 'tha', 'Thecc.06G118100' => 'tca', 'Thecc.09G061200' => 'tca', 'Thecc.09G081100' => 'tca', 'Thhalv10012317m.g' => 'esa', 'Thhalv10013873m.g' => 'esa', 'Thhalv10022002m.g' => 'esa', 'TPR.G16451' => 'tpr', 'TPR.G3574' => 'tpr', 'TPR.G38875' => 'tpr', 'TPR.G9464' => 'tpr', 'TWI31G0706' => 'twi', 'TWI32G0026' => 'twi', 'TWI32G0337' => 'twi', 'TWI34G1323' => 'twi', 'TWI63G0114' => 'twi', 'TWI75G1417' => 'twi', 'unitig_32.g11566' => 'ugi', 'unitig_748.g7466' => 'ugi', 'unitig_748.g7533' => 'ugi', 'unitig_749.g14235' => 'ugi', 'vmacro15021' => 'vma', 'vmacro17175' => 'vma', 'VMungo0331G1191' => 'vmu', 'VMungo0647G0706' => 'vmu', 'VMungo1215G1300' => 'vmu', 'VMungo1309G2463' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001488' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001488' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001488' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001488' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001488', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '426', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39640' => 'bna', 'A02p01350' => 'bna', 'A05p35430' => 'bna', 'A06p00470' => 'bna', 'A08p01130' => 'bna', 'A10p25720' => 'bna', 'Aa31LG10G1240' => 'aar', 'Aa31LG3G15180' => 'aar', 'Aa31LG4G13280' => 'aar', 'Aa31LG8G1180' => 'aar', 'Actinidia03307' => 'ach', 'Actinidia21787' => 'ach', 'Actinidia25699' => 'ach', 'Actinidia27576' => 'ach', 'Actinidia32178' => 'ach', 'Actinidia39685' => 'ach', 'Ah.08g216680' => 'amhyb', 'Ah.10g033990' => 'amhyb', 'AL1G62910' => 'aly', 'AL3G26180' => 'aly', 'AL5G21160' => 'aly', 'AL6G22840' => 'aly', 'Aqoxy1G01010' => 'aox', 'Aqoxy4G01396' => 'aox', 'Aqoxy7G01095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1030I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N5SZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62UK56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8XJ49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3VH7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HX0TR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S358VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVA0C2' => 'arhy', 'AT1G54200' => 'ath', 'AT3G13980' => 'ath', 'AT3G42800' => 'ath', 'AT5G12050' => 'ath', 'ATR0598G179' => 'atr', 'Atru.chr1.3909' => 'acertr', 'Atru.chr7.1663' => 'acertr', 'Atru.chr7.1866' => 'acertr', 'AUR62001497' => 'cqu', 'AUR62009095' => 'cqu', 'AUR62009873' => 'cqu', 'AUR62020576' => 'cqu', 'AUR62028996' => 'cqu', 'BcaB01g05432' => 'bca', 'BcaB04g17017' => 'bca', 'BcaB04g20965' => 'bca', 'BcaB06g25413' => 'bca', 'BcaB07g33247' => 'bca', 'BcaC01g01441' => 'bca', 'BcaC03g13409' => 'bca', 'BcaC05g29134' => 'bca', 'BcaC08g43599' => 'bca', 'BcaC09g48386' => 'bca', 'BcaNung02630' => 'bca', 'BolC1t05011H' => 'bol', 'BolC2t06503H' => 'bol', 'BolC3t13127H' => 'bol', 'BolC3t21524H' => 'bol', 'BolC5t34042H' => 'bol', 'BolC6t36070H' => 'bol', 'BolC9t59310H' => 'bol', 'BraA01t04005Z' => 'bra', 'BraA02t05114Z' => 'bra', 'BraA03t09876Z' => 'bra', 'BraA05t22353Z' => 'bra', 'BraA06t23261Z' => 'bra', 'BraA08t32167Z' => 'bra', 'BraA10t44637Z' => 'bra', 'C01p50620' => 'bna', 'C02p05590' => 'bna', 'C03p06200' => 'bna', 'C03p92070' => 'bna', 'C05p53720' => 'bna', 'C06p09970' => 'bna', 'C09p64790' => 'bna', 'CAN.G1387.3' => 'can', 'CAN.G1387.5' => 'can', 'CANSAT25G3298' => 'cansat', 'CANSAT56G0195' => 'cansat', 'CANSAT56G4431' => 'cansat', 'CARHR044570' => 'chi', 'CARHR088800' => 'chi', 'CARHR153760' => 'chi', 'CARHR201080' => 'chi', 'Carub.0001s4343' => 'cru', 'Carub.0003s1356' => 'cru', 'Carub.0005s0885' => 'cru', 'Carub.0006s1057' => 'cru', 'Ca_13105_v3' => 'car', 'Ca_15839_v3' => 'car', 'Cc04_g01440' => 'ccan', 'Cc06_g11890' => 'ccan', 'Cc08_g01330' => 'ccan', 'CDE05G0831' => 'cde', 'CDE05G3396' => 'cde', 'CDE10G0469' => 'cde', 'CDE11G0090' => 'cde', 'Cfa003031' => 'cfa', 'Cfa003543' => 'cfa', 'Cfa011880' => 'cfa', 'Cfa018007' => 'cfa', 'Ciclev10008257m.g' => 'ccl', 'Ciclev10008758m.g' => 'ccl', 'Ciclev10025682m.g' => 'ccl', 'CiPaw.01G220600' => 'cil', 'CiPaw.02G136700' => 'cil', 'CiPaw.03G210100' => 'cil', 'CiPaw.04G146700' => 'cil', 'CiPaw.10G053700' => 'cil', 'CiPaw.15G090100' => 'cil', 'ClCG05G015630' => 'cla', 'ClCG07G013990' => 'cla', 'ClCG08G009900' => 'cla', 'ClCG09G000910' => 'cla', 'COL.COLO4_18134' => 'col', 'COL.COLO4_21120' => 'col', 'COL.COLO4_30774' => 'col', 'Cpa.g.sc126.40' => 'cpa', 'Cpa.g.sc25.102' => 'cpa', 'Cpa.g.sc28.87' => 'cpa', 'CsaV3_3G043550' => 'csa', 'CsaV3_4G035960' => 'csa', 'CsaV3_6G032000' => 'csa', 'CsaV3_7G034550' => 'csa', 'CSS0004414' => 'camsi', 'CSS0039321' => 'camsi', 'DCAR_007642' => 'dca', 'DCAR_022698' => 'dca', 'DCAR_026410' => 'dca', 'DCAR_028288' => 'dca', 'Dinv04028' => 'din', 'Dinv04257' => 'din', 'Dinv10389' => 'din', 'Dinv25581' => 'din', 'Dinv37875' => 'din', 'Dinv41833' => 'din', 'Dinv42369' => 'din', 'Dinv44677' => 'din', 'Duzib150G0073' => 'dzi', 'Duzib150G1066' => 'dzi', 'Duzib160G0588' => 'dzi', 'Duzib168G0244' => 'dzi', 'Duzib168G1997' => 'dzi', 'Duzib187G1785' => 'dzi', 'Duzib187G1885' => 'dzi', 'Duzib192G0094' => 'dzi', 'Duzib235G0516' => 'dzi', 'ECA236G0014' => 'eca', 'ECA240G4202' => 'eca', 'ECA247G0079' => 'eca', 'EL10Ac2g03800' => 'bvu', 'EL10Ac7g16397' => 'bvu', 'EL10Ac8g19131' => 'bvu', 'Eucgr.C00707' => 'egr', 'Eucgr.C03147' => 'egr', 'Eucgr.F03172' => 'egr', 'Eucgr.J02829' => 'egr', 'FAN02G1354' => 'fan', 'FAN05G4431' => 'fan', 'FAN09G3059' => 'fan', 'FAN14G3952' => 'fan', 'FAN15G1669' => 'fan', 'FAN19G1765' => 'fan', 'FAN20G1484' => 'fan', 'FAN23G0146' => 'fan', 'FAN24G0924' => 'fan', 'FAN26G0348' => 'fan', 'FAN26G2822' => 'fan', 'FAN27G1098' => 'fan', 'FAN28G0322' => 'fan', 'FAN28G2908' => 'fan', 'FvH4_1g08230' => 'fve', 'FvH4_2g31260' => 'fve', 'FvH4_6g34500' => 'fve', 'Glyma.04G055100' => 'gma', 'Glyma.06G055200' => 'gma', 'Glyma.07G036700' => 'gma', 'Glyma.13G108300' => 'gma', 'Glyma.14G099400' => 'gma', 'Glyma.16G006100' => 'gma', 'Glyma.17G051100' => 'gma', 'Glyma.17G225300' => 'gma', 'Gohir.A05G039500' => 'ghi', 'Gohir.A05G137600' => 'ghi', 'Gohir.A05G406200' => 'ghi', 'Gohir.A06G075300' => 'ghi', 'Gohir.A06G083100' => 'ghi', 'Gohir.A07G020501' => 'ghi', 'Gohir.A10G052900' => 'ghi', 'Gohir.D04G009400' => 'ghi', 'Gohir.D05G041000' => 'ghi', 'Gohir.D05G139700' => 'ghi', 'Gohir.D06G074100' => 'ghi', 'Gohir.D06G083800' => 'ghi', 'Gohir.D07G020200' => 'ghi', 'Gohir.D10G054700' => 'ghi', 'Gorai.001G021000' => 'gra', 'Gorai.009G041500' => 'gra', 'Gorai.009G144000' => 'gra', 'Gorai.010G086600' => 'gra', 'Gorai.010G097300' => 'gra', 'Gorai.011G058200' => 'gra', 'Gorai.012G011300' => 'gra', 'GSVIVG01015116001' => 'vvi', 'GSVIVG01016780001' => 'vvi', 'HanXRQChr03g0069531' => 'han', 'HanXRQChr04g0094821' => 'han', 'HanXRQChr05g0139531' => 'han', 'HanXRQChr06g0182641' => 'han', 'HanXRQChr09g0276771' => 'han', 'HanXRQChr10g0312441' => 'han', 'HanXRQChr10g0319591' => 'han', 'HanXRQChr15g0497071' => 'han', 'HanXRQChr16g0532421' => 'han', 'Haze_16017' => 'cav', 'Haze_18123' => 'cav', 'Haze_25969' => 'cav', 'Hma1.2p1_0291F.1_g115200' => 'hma', 'Hma1.2p1_0732F.1_g209990' => 'hma', 'Hma1.2p1_0797F.1_g219410' => 'hma', 'HPP92_004377' => 'vpl', 'HPP92_007989' => 'vpl', 'HPP92_023459' => 'vpl', 'HPP92_023473' => 'vpl', 'Lalb_Chr04g0263371' => 'lal', 'Lalb_Chr07g0181051' => 'lal', 'Lalb_Chr08g0244861' => 'lal', 'Lalb_Chr11g0074331' => 'lal', 'Lalb_Chr13g0299551' => 'lal', 'Lalb_Chr14g0375531' => 'lal', 'Lalb_Chr24g0393631' => 'lal', 'Lalb_Chr25g0281171' => 'lal', 'Lj1g0010668' => 'lja', 'Lj3g0028193' => 'lja', 'Lj5C38T14' => 'lonja', 'Lj5g0009631' => 'lja', 'Lj6g0003493' => 'lja', 'Lj7C233T2' => 'lonja', 'Lj8C508T0' => 'lonja', 'Lj8C510T4' => 'lonja', 'Lj9P522T34' => 'lonja', 'Lsat_1_v5_gn_1_37441' => 'lsa', 'Lsat_1_v5_gn_4_93600' => 'lsa', 'Lsat_1_v5_gn_5_135800' => 'lsa', 'Lsat_1_v5_gn_5_141901' => 'lsa', 'Lsat_1_v5_gn_7_60060' => 'lsa', 'Lsat_1_v5_gn_8_99360' => 'lsa', 'Manes.03G038000' => 'mes', 'Manes.03G052400' => 'mes', 'Manes.04G143200' => 'mes', 'Manes.11G021800' => 'mes', 'Manes.16G084100' => 'mes', 'Manes.16G097700' => 'mes', 'MBI13_g11365_MAGBIO' => 'mbi', 'MBI19_g35474_MAGBIO' => 'mbi', 'MD02G1086600' => 'mdo', 'MD08G1069700' => 'mdo', 'MD09G1185600' => 'mdo', 'MD15G1052300' => 'mdo', 'MD15G1213800' => 'mdo', 'MD17G1170300' => 'mdo', 'Medtr1g015275' => 'mtr', 'Medtr3g104880' => 'mtr', 'Medtr4g125620' => 'mtr', 'Medtr8g019660' => 'mtr', 'MELO3C011481.2' => 'cme', 'MELO3C016903.2' => 'cme', 'MELO3C024362.2' => 'cme', 'MELO3C025811.2' => 'cme', 'Migut.A00091' => 'egut', 'Migut.E01574' => 'egut', 'Migut.I01063' => 'egut', 'Migut.J00952' => 'egut', 'Migut.L01544' => 'egut', 'MSTRG.10960' => 'ama', 'MSTRG.11640' => 'ama', 'MSTRG.14063' => 'ama', 'Nitab4.5_0000073g0010' => 'nta', 'Nitab4.5_0001866g0020' => 'nta', 'Nitab4.5_0002072g0060' => 'nta', 'Nitab4.5_0002842g0070' => 'nta', 'Nitab4.5_0002879g0080' => 'nta', 'Nitab4.5_0003670g0010' => 'nta', 'Nitab4.5_0004953g0060' => 'nta', 'Nitab4.5_0009588g0020' => 'nta', 'Nitab4.5_0010890g0020' => 'nta', 'Nn3g17646' => 'nnu', 'Nn6g35590' => 'nnu', 'Oeu002849.1' => 'oeu', 'Oeu003979.1' => 'oeu', 'Oeu007567.1' => 'oeu', 'Oeu010818.1' => 'oeu', 'Oeu022777.1' => 'oeu', 'Oeu027281.1' => 'oeu', 'Oeu027282.1' => 'oeu', 'Oeu029698.1' => 'oeu', 'Oeu049518.1' => 'oeu', 'Oeu051321.1' => 'oeu', 'Oeu058721.1' => 'oeu', 'Oeu063408.1' => 'oeu', 'Peaxi162Scf00038g01811' => 'pax', 'Peaxi162Scf00101g00121' => 'pax', 'Peaxi162Scf00219g00053' => 'pax', 'Peaxi162Scf00498g00065' => 'pax', 'Peaxi162Scf00809g00410' => 'pax', 'PGR031G1119' => 'pgr', 'PGR044G1728' => 'pgr', 'PGR102G0969' => 'pgr', 'PGR119G0990' => 'pgr', 'PGR142G0115' => 'pgr', 'PGSC0003DMG400002570' => 'stu', 'PGSC0003DMG400011607' => 'stu', 'PGSC0003DMG400011608' => 'stu', 'PGSC0003DMG400019573' => 'stu', 'PGSC0003DMG400021740' => 'stu', 'Phvul.001G039400' => 'pvu', 'Phvul.003G132800' => 'pvu', 'Phvul.009G081100' => 'pvu', 'Phvul.010G132500' => 'pvu', 'Potri.001G170500' => 'ptr', 'Potri.003G063400' => 'ptr', 'Potri.006G144700' => 'ptr', 'Potri.006G222700' => 'ptr', 'Potri.018G049900' => 'ptr', 'Potri.018G065000' => 'ptr', 'Prupe.1G406300' => 'ppe', 'Prupe.3G043400' => 'ppe', 'Prupe.7G203200' => 'ppe', 'Psat0s89g0040' => 'psa', 'Psat0s89g0080' => 'psa', 'Psat4g017040' => 'psa', 'Psat4g183280' => 'psa', 'Psat6g022320' => 'psa', 'PSO063G4179' => 'pso', 'PSO210G0965' => 'pso', 'PSO210G7252' => 'pso', 'PSO421G0310' => 'pso', 'QL02p000252' => 'qlo', 'QL02p061086' => 'qlo', 'QL05p008269' => 'qlo', 'RcHm_v2.0_Chr2g0094281' => 'rch', 'RcHm_v2.0_Chr2g0144811' => 'rch', 'RcHm_v2.0_Chr6g0311541' => 'rch', 'Rhsim05G0012700' => 'rsi', 'Rhsim08G0237500' => 'rsi', 'Sabra01G0140700' => 'sbr', 'Sabra01G0140800' => 'sbr', 'Sabra03G0037000' => 'sbr', 'Sabra06G0113200' => 'sbr', 'Sabra06G0114500' => 'sbr', 'Sabra06G0172100' => 'sbr', 'Sabra18G0046900' => 'sbr', 'Sabra18G0057600' => 'sbr', 'SalBow4G1810' => 'sbo', 'SalBow6G0975' => 'sbo', 'SalBow6G6945' => 'sbo', 'SalBow7G2112' => 'sbo', 'Sc08g0008770' => 'sci', 'Sc12g0010520' => 'sci', 'Sc15g0000490' => 'sci', 'Sc23g0004250' => 'sci', 'Sed0001708' => 'sed', 'Sed0006913' => 'sed', 'Sed0010087' => 'sed', 'Sed0012607' => 'sed', 'Sed0014419' => 'sed', 'Sed0017598' => 'sed', 'Sed0027990' => 'sed', 'SEGI_11407' => 'sgi', 'SEGI_36444' => 'sgi', 'SGA_v2.0_scaffold163G38002' => 'sas', 'SGA_v2.0_scaffold20G09177' => 'sas', 'SGA_v2.0_scaffold21G09472' => 'sas', 'SGA_v2.0_scaffold64G21860' => 'sas', 'SGA_v2.0_scaffold71G23864' => 'sas', 'SGA_v2.0_scaffold97G29150' => 'sas', 'SHI18834' => 'shi', 'Solyc03g121970.1' => 'sly', 'Solyc07g041290.3' => 'sly', 'Solyc08g062180.3' => 'sly', 'Solyc12g049255.1' => 'sly', 'Sopen03g040790' => 'spe', 'Sopen07g020600' => 'spe', 'Sopen08g017750' => 'spe', 'Sopen12g023740' => 'spe', 'Sp3g12230' => 'spa', 'Sp6g31550' => 'spa', 'SpUn0007_0150' => 'spa', 'SpUn0013_0010' => 'spa', 'TAR383G0478' => 'tar', 'TAR624G1410' => 'tar', 'TAR626G0456' => 'tar', 'THA.LOC104799149' => 'tha', 'THA.LOC104803702' => 'tha', 'THA.LOC104811003' => 'tha', 'THA.LOC104815629' => 'tha', 'THA.LOC104822656' => 'tha', 'Thecc.06G118100' => 'tca', 'Thecc.09G061200' => 'tca', 'Thecc.09G081100' => 'tca', 'Thhalv10012317m.g' => 'esa', 'Thhalv10013873m.g' => 'esa', 'Thhalv10022002m.g' => 'esa', 'TPR.G16451' => 'tpr', 'TPR.G3574' => 'tpr', 'TPR.G38875' => 'tpr', 'TPR.G9464' => 'tpr', 'TWI31G0706' => 'twi', 'TWI32G0026' => 'twi', 'TWI32G0337' => 'twi', 'TWI34G1323' => 'twi', 'TWI63G0114' => 'twi', 'TWI75G1417' => 'twi', 'unitig_32.g11566' => 'ugi', 'unitig_748.g7466' => 'ugi', 'unitig_748.g7533' => 'ugi', 'unitig_749.g14235' => 'ugi', 'vmacro15021' => 'vma', 'vmacro17175' => 'vma', 'VMungo0331G1191' => 'vmu', 'VMungo0647G0706' => 'vmu', 'VMungo1215G1300' => 'vmu', 'VMungo1309G2463' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001488', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001488' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001488', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '426', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001488' ) ), 'genes' => array( 'A01p39640' => 'bna', 'A02p01350' => 'bna', 'A05p35430' => 'bna', 'A06p00470' => 'bna', 'A08p01130' => 'bna', 'A10p25720' => 'bna', 'Aa31LG10G1240' => 'aar', 'Aa31LG3G15180' => 'aar', 'Aa31LG4G13280' => 'aar', 'Aa31LG8G1180' => 'aar', 'Actinidia03307' => 'ach', 'Actinidia21787' => 'ach', 'Actinidia25699' => 'ach', 'Actinidia27576' => 'ach', 'Actinidia32178' => 'ach', 'Actinidia39685' => 'ach', 'Ah.08g216680' => 'amhyb', 'Ah.10g033990' => 'amhyb', 'AL1G62910' => 'aly', 'AL3G26180' => 'aly', 'AL5G21160' => 'aly', 'AL6G22840' => 'aly', 'Aqoxy1G01010' => 'aox', 'Aqoxy4G01396' => 'aox', 'Aqoxy7G01095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1030I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N5SZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62UK56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8XJ49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3VH7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HX0TR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S358VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVA0C2' => 'arhy', 'AT1G54200' => 'ath', 'AT3G13980' => 'ath', 'AT3G42800' => 'ath', 'AT5G12050' => 'ath', 'ATR0598G179' => 'atr', 'Atru.chr1.3909' => 'acertr', 'Atru.chr7.1663' => 'acertr', 'Atru.chr7.1866' => 'acertr', 'AUR62001497' => 'cqu', 'AUR62009095' => 'cqu', 'AUR62009873' => 'cqu', 'AUR62020576' => 'cqu', 'AUR62028996' => 'cqu', 'BcaB01g05432' => 'bca', 'BcaB04g17017' => 'bca', 'BcaB04g20965' => 'bca', 'BcaB06g25413' => 'bca', 'BcaB07g33247' => 'bca', 'BcaC01g01441' => 'bca', 'BcaC03g13409' => 'bca', 'BcaC05g29134' => 'bca', 'BcaC08g43599' => 'bca', 'BcaC09g48386' => 'bca', 'BcaNung02630' => 'bca', 'BolC1t05011H' => 'bol', 'BolC2t06503H' => 'bol', 'BolC3t13127H' => 'bol', 'BolC3t21524H' => 'bol', 'BolC5t34042H' => 'bol', 'BolC6t36070H' => 'bol', 'BolC9t59310H' => 'bol', 'BraA01t04005Z' => 'bra', 'BraA02t05114Z' => 'bra', 'BraA03t09876Z' => 'bra', 'BraA05t22353Z' => 'bra', 'BraA06t23261Z' => 'bra', 'BraA08t32167Z' => 'bra', 'BraA10t44637Z' => 'bra', 'C01p50620' => 'bna', 'C02p05590' => 'bna', 'C03p06200' => 'bna', 'C03p92070' => 'bna', 'C05p53720' => 'bna', 'C06p09970' => 'bna', 'C09p64790' => 'bna', 'CAN.G1387.3' => 'can', 'CAN.G1387.5' => 'can', 'CANSAT25G3298' => 'cansat', 'CANSAT56G0195' => 'cansat', 'CANSAT56G4431' => 'cansat', 'CARHR044570' => 'chi', 'CARHR088800' => 'chi', 'CARHR153760' => 'chi', 'CARHR201080' => 'chi', 'Carub.0001s4343' => 'cru', 'Carub.0003s1356' => 'cru', 'Carub.0005s0885' => 'cru', 'Carub.0006s1057' => 'cru', 'Ca_13105_v3' => 'car', 'Ca_15839_v3' => 'car', 'Cc04_g01440' => 'ccan', 'Cc06_g11890' => 'ccan', 'Cc08_g01330' => 'ccan', 'CDE05G0831' => 'cde', 'CDE05G3396' => 'cde', 'CDE10G0469' => 'cde', 'CDE11G0090' => 'cde', 'Cfa003031' => 'cfa', 'Cfa003543' => 'cfa', 'Cfa011880' => 'cfa', 'Cfa018007' => 'cfa', 'Ciclev10008257m.g' => 'ccl', 'Ciclev10008758m.g' => 'ccl', 'Ciclev10025682m.g' => 'ccl', 'CiPaw.01G220600' => 'cil', 'CiPaw.02G136700' => 'cil', 'CiPaw.03G210100' => 'cil', 'CiPaw.04G146700' => 'cil', 'CiPaw.10G053700' => 'cil', 'CiPaw.15G090100' => 'cil', 'ClCG05G015630' => 'cla', 'ClCG07G013990' => 'cla', 'ClCG08G009900' => 'cla', 'ClCG09G000910' => 'cla', 'COL.COLO4_18134' => 'col', 'COL.COLO4_21120' => 'col', 'COL.COLO4_30774' => 'col', 'Cpa.g.sc126.40' => 'cpa', 'Cpa.g.sc25.102' => 'cpa', 'Cpa.g.sc28.87' => 'cpa', 'CsaV3_3G043550' => 'csa', 'CsaV3_4G035960' => 'csa', 'CsaV3_6G032000' => 'csa', 'CsaV3_7G034550' => 'csa', 'CSS0004414' => 'camsi', 'CSS0039321' => 'camsi', 'DCAR_007642' => 'dca', 'DCAR_022698' => 'dca', 'DCAR_026410' => 'dca', 'DCAR_028288' => 'dca', 'Dinv04028' => 'din', 'Dinv04257' => 'din', 'Dinv10389' => 'din', 'Dinv25581' => 'din', 'Dinv37875' => 'din', 'Dinv41833' => 'din', 'Dinv42369' => 'din', 'Dinv44677' => 'din', 'Duzib150G0073' => 'dzi', 'Duzib150G1066' => 'dzi', 'Duzib160G0588' => 'dzi', 'Duzib168G0244' => 'dzi', 'Duzib168G1997' => 'dzi', 'Duzib187G1785' => 'dzi', 'Duzib187G1885' => 'dzi', 'Duzib192G0094' => 'dzi', 'Duzib235G0516' => 'dzi', 'ECA236G0014' => 'eca', 'ECA240G4202' => 'eca', 'ECA247G0079' => 'eca', 'EL10Ac2g03800' => 'bvu', 'EL10Ac7g16397' => 'bvu', 'EL10Ac8g19131' => 'bvu', 'Eucgr.C00707' => 'egr', 'Eucgr.C03147' => 'egr', 'Eucgr.F03172' => 'egr', 'Eucgr.J02829' => 'egr', 'FAN02G1354' => 'fan', 'FAN05G4431' => 'fan', 'FAN09G3059' => 'fan', 'FAN14G3952' => 'fan', 'FAN15G1669' => 'fan', 'FAN19G1765' => 'fan', 'FAN20G1484' => 'fan', 'FAN23G0146' => 'fan', 'FAN24G0924' => 'fan', 'FAN26G0348' => 'fan', 'FAN26G2822' => 'fan', 'FAN27G1098' => 'fan', 'FAN28G0322' => 'fan', 'FAN28G2908' => 'fan', 'FvH4_1g08230' => 'fve', 'FvH4_2g31260' => 'fve', 'FvH4_6g34500' => 'fve', 'Glyma.04G055100' => 'gma', 'Glyma.06G055200' => 'gma', 'Glyma.07G036700' => 'gma', 'Glyma.13G108300' => 'gma', 'Glyma.14G099400' => 'gma', 'Glyma.16G006100' => 'gma', 'Glyma.17G051100' => 'gma', 'Glyma.17G225300' => 'gma', 'Gohir.A05G039500' => 'ghi', 'Gohir.A05G137600' => 'ghi', 'Gohir.A05G406200' => 'ghi', 'Gohir.A06G075300' => 'ghi', 'Gohir.A06G083100' => 'ghi', 'Gohir.A07G020501' => 'ghi', 'Gohir.A10G052900' => 'ghi', 'Gohir.D04G009400' => 'ghi', 'Gohir.D05G041000' => 'ghi', 'Gohir.D05G139700' => 'ghi', 'Gohir.D06G074100' => 'ghi', 'Gohir.D06G083800' => 'ghi', 'Gohir.D07G020200' => 'ghi', 'Gohir.D10G054700' => 'ghi', 'Gorai.001G021000' => 'gra', 'Gorai.009G041500' => 'gra', 'Gorai.009G144000' => 'gra', 'Gorai.010G086600' => 'gra', 'Gorai.010G097300' => 'gra', 'Gorai.011G058200' => 'gra', 'Gorai.012G011300' => 'gra', 'GSVIVG01015116001' => 'vvi', 'GSVIVG01016780001' => 'vvi', 'HanXRQChr03g0069531' => 'han', 'HanXRQChr04g0094821' => 'han', 'HanXRQChr05g0139531' => 'han', 'HanXRQChr06g0182641' => 'han', 'HanXRQChr09g0276771' => 'han', 'HanXRQChr10g0312441' => 'han', 'HanXRQChr10g0319591' => 'han', 'HanXRQChr15g0497071' => 'han', 'HanXRQChr16g0532421' => 'han', 'Haze_16017' => 'cav', 'Haze_18123' => 'cav', 'Haze_25969' => 'cav', 'Hma1.2p1_0291F.1_g115200' => 'hma', 'Hma1.2p1_0732F.1_g209990' => 'hma', 'Hma1.2p1_0797F.1_g219410' => 'hma', 'HPP92_004377' => 'vpl', 'HPP92_007989' => 'vpl', 'HPP92_023459' => 'vpl', 'HPP92_023473' => 'vpl', 'Lalb_Chr04g0263371' => 'lal', 'Lalb_Chr07g0181051' => 'lal', 'Lalb_Chr08g0244861' => 'lal', 'Lalb_Chr11g0074331' => 'lal', 'Lalb_Chr13g0299551' => 'lal', 'Lalb_Chr14g0375531' => 'lal', 'Lalb_Chr24g0393631' => 'lal', 'Lalb_Chr25g0281171' => 'lal', 'Lj1g0010668' => 'lja', 'Lj3g0028193' => 'lja', 'Lj5C38T14' => 'lonja', 'Lj5g0009631' => 'lja', 'Lj6g0003493' => 'lja', 'Lj7C233T2' => 'lonja', 'Lj8C508T0' => 'lonja', 'Lj8C510T4' => 'lonja', 'Lj9P522T34' => 'lonja', 'Lsat_1_v5_gn_1_37441' => 'lsa', 'Lsat_1_v5_gn_4_93600' => 'lsa', 'Lsat_1_v5_gn_5_135800' => 'lsa', 'Lsat_1_v5_gn_5_141901' => 'lsa', 'Lsat_1_v5_gn_7_60060' => 'lsa', 'Lsat_1_v5_gn_8_99360' => 'lsa', 'Manes.03G038000' => 'mes', 'Manes.03G052400' => 'mes', 'Manes.04G143200' => 'mes', 'Manes.11G021800' => 'mes', 'Manes.16G084100' => 'mes', 'Manes.16G097700' => 'mes', 'MBI13_g11365_MAGBIO' => 'mbi', 'MBI19_g35474_MAGBIO' => 'mbi', 'MD02G1086600' => 'mdo', 'MD08G1069700' => 'mdo', 'MD09G1185600' => 'mdo', 'MD15G1052300' => 'mdo', 'MD15G1213800' => 'mdo', 'MD17G1170300' => 'mdo', 'Medtr1g015275' => 'mtr', 'Medtr3g104880' => 'mtr', 'Medtr4g125620' => 'mtr', 'Medtr8g019660' => 'mtr', 'MELO3C011481.2' => 'cme', 'MELO3C016903.2' => 'cme', 'MELO3C024362.2' => 'cme', 'MELO3C025811.2' => 'cme', 'Migut.A00091' => 'egut', 'Migut.E01574' => 'egut', 'Migut.I01063' => 'egut', 'Migut.J00952' => 'egut', 'Migut.L01544' => 'egut', 'MSTRG.10960' => 'ama', 'MSTRG.11640' => 'ama', 'MSTRG.14063' => 'ama', 'Nitab4.5_0000073g0010' => 'nta', 'Nitab4.5_0001866g0020' => 'nta', 'Nitab4.5_0002072g0060' => 'nta', 'Nitab4.5_0002842g0070' => 'nta', 'Nitab4.5_0002879g0080' => 'nta', 'Nitab4.5_0003670g0010' => 'nta', 'Nitab4.5_0004953g0060' => 'nta', 'Nitab4.5_0009588g0020' => 'nta', 'Nitab4.5_0010890g0020' => 'nta', 'Nn3g17646' => 'nnu', 'Nn6g35590' => 'nnu', 'Oeu002849.1' => 'oeu', 'Oeu003979.1' => 'oeu', 'Oeu007567.1' => 'oeu', 'Oeu010818.1' => 'oeu', 'Oeu022777.1' => 'oeu', 'Oeu027281.1' => 'oeu', 'Oeu027282.1' => 'oeu', 'Oeu029698.1' => 'oeu', 'Oeu049518.1' => 'oeu', 'Oeu051321.1' => 'oeu', 'Oeu058721.1' => 'oeu', 'Oeu063408.1' => 'oeu', 'Peaxi162Scf00038g01811' => 'pax', 'Peaxi162Scf00101g00121' => 'pax', 'Peaxi162Scf00219g00053' => 'pax', 'Peaxi162Scf00498g00065' => 'pax', 'Peaxi162Scf00809g00410' => 'pax', 'PGR031G1119' => 'pgr', 'PGR044G1728' => 'pgr', 'PGR102G0969' => 'pgr', 'PGR119G0990' => 'pgr', 'PGR142G0115' => 'pgr', 'PGSC0003DMG400002570' => 'stu', 'PGSC0003DMG400011607' => 'stu', 'PGSC0003DMG400011608' => 'stu', 'PGSC0003DMG400019573' => 'stu', 'PGSC0003DMG400021740' => 'stu', 'Phvul.001G039400' => 'pvu', 'Phvul.003G132800' => 'pvu', 'Phvul.009G081100' => 'pvu', 'Phvul.010G132500' => 'pvu', 'Potri.001G170500' => 'ptr', 'Potri.003G063400' => 'ptr', 'Potri.006G144700' => 'ptr', 'Potri.006G222700' => 'ptr', 'Potri.018G049900' => 'ptr', 'Potri.018G065000' => 'ptr', 'Prupe.1G406300' => 'ppe', 'Prupe.3G043400' => 'ppe', 'Prupe.7G203200' => 'ppe', 'Psat0s89g0040' => 'psa', 'Psat0s89g0080' => 'psa', 'Psat4g017040' => 'psa', 'Psat4g183280' => 'psa', 'Psat6g022320' => 'psa', 'PSO063G4179' => 'pso', 'PSO210G0965' => 'pso', 'PSO210G7252' => 'pso', 'PSO421G0310' => 'pso', 'QL02p000252' => 'qlo', 'QL02p061086' => 'qlo', 'QL05p008269' => 'qlo', 'RcHm_v2.0_Chr2g0094281' => 'rch', 'RcHm_v2.0_Chr2g0144811' => 'rch', 'RcHm_v2.0_Chr6g0311541' => 'rch', 'Rhsim05G0012700' => 'rsi', 'Rhsim08G0237500' => 'rsi', 'Sabra01G0140700' => 'sbr', 'Sabra01G0140800' => 'sbr', 'Sabra03G0037000' => 'sbr', 'Sabra06G0113200' => 'sbr', 'Sabra06G0114500' => 'sbr', 'Sabra06G0172100' => 'sbr', 'Sabra18G0046900' => 'sbr', 'Sabra18G0057600' => 'sbr', 'SalBow4G1810' => 'sbo', 'SalBow6G0975' => 'sbo', 'SalBow6G6945' => 'sbo', 'SalBow7G2112' => 'sbo', 'Sc08g0008770' => 'sci', 'Sc12g0010520' => 'sci', 'Sc15g0000490' => 'sci', 'Sc23g0004250' => 'sci', 'Sed0001708' => 'sed', 'Sed0006913' => 'sed', 'Sed0010087' => 'sed', 'Sed0012607' => 'sed', 'Sed0014419' => 'sed', 'Sed0017598' => 'sed', 'Sed0027990' => 'sed', 'SEGI_11407' => 'sgi', 'SEGI_36444' => 'sgi', 'SGA_v2.0_scaffold163G38002' => 'sas', 'SGA_v2.0_scaffold20G09177' => 'sas', 'SGA_v2.0_scaffold21G09472' => 'sas', 'SGA_v2.0_scaffold64G21860' => 'sas', 'SGA_v2.0_scaffold71G23864' => 'sas', 'SGA_v2.0_scaffold97G29150' => 'sas', 'SHI18834' => 'shi', 'Solyc03g121970.1' => 'sly', 'Solyc07g041290.3' => 'sly', 'Solyc08g062180.3' => 'sly', 'Solyc12g049255.1' => 'sly', 'Sopen03g040790' => 'spe', 'Sopen07g020600' => 'spe', 'Sopen08g017750' => 'spe', 'Sopen12g023740' => 'spe', 'Sp3g12230' => 'spa', 'Sp6g31550' => 'spa', 'SpUn0007_0150' => 'spa', 'SpUn0013_0010' => 'spa', 'TAR383G0478' => 'tar', 'TAR624G1410' => 'tar', 'TAR626G0456' => 'tar', 'THA.LOC104799149' => 'tha', 'THA.LOC104803702' => 'tha', 'THA.LOC104811003' => 'tha', 'THA.LOC104815629' => 'tha', 'THA.LOC104822656' => 'tha', 'Thecc.06G118100' => 'tca', 'Thecc.09G061200' => 'tca', 'Thecc.09G081100' => 'tca', 'Thhalv10012317m.g' => 'esa', 'Thhalv10013873m.g' => 'esa', 'Thhalv10022002m.g' => 'esa', 'TPR.G16451' => 'tpr', 'TPR.G3574' => 'tpr', 'TPR.G38875' => 'tpr', 'TPR.G9464' => 'tpr', 'TWI31G0706' => 'twi', 'TWI32G0026' => 'twi', 'TWI32G0337' => 'twi', 'TWI34G1323' => 'twi', 'TWI63G0114' => 'twi', 'TWI75G1417' => 'twi', 'unitig_32.g11566' => 'ugi', 'unitig_748.g7466' => 'ugi', 'unitig_748.g7533' => 'ugi', 'unitig_749.g14235' => 'ugi', 'vmacro15021' => 'vma', 'vmacro17175' => 'vma', 'VMungo0331G1191' => 'vmu', 'VMungo0647G0706' => 'vmu', 'VMungo1215G1300' => 'vmu', 'VMungo1309G2463' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001488' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001488' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001488' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001488' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151