Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001464', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '433', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p29040' => 'bna', 'A02p10750' => 'bna', 'A05p34240' => 'bna', 'A09p17700' => 'bna', 'A10p11290' => 'bna', 'Aa31LG2G10180' => 'aar', 'Aa31LG3G10040' => 'aar', 'Aa31LG8G2430' => 'aar', 'Actinidia01084' => 'ach', 'Actinidia08175' => 'ach', 'Actinidia15025' => 'ach', 'Actinidia18775' => 'ach', 'Actinidia22655' => 'ach', 'Actinidia27774' => 'ach', 'Actinidia32591' => 'ach', 'Actinidia35242' => 'ach', 'Ah.02g129740' => 'amhyb', 'Ah.04g164710' => 'amhyb', 'AL2G16630' => 'aly', 'AL3G27630' => 'aly', 'AL8G28980' => 'aly', 'Aqoxy1G02343' => 'aox', 'Aqoxy3G00949' => 'aox', 'Aqoxy3G03050' => 'aox', 'Aqoxy4G00711' => 'aox', 'Aqoxy5G01167_Aqoxy5G01168' => 'aox', 'arahy.Tifrunner.gnm1.ann1.D71PUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS6UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1NYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT2E5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRGB4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RD9LCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7VZNI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFL0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZL1FCV' => 'arhy', 'AT1G60060' => 'ath', 'AT3G15240' => 'ath', 'AT5G53900' => 'ath', 'ATR0580G446' => 'atr', 'ATR1094G020' => 'atr', 'ATR1149G003' => 'atr', 'Atru.chr11.1992' => 'acertr', 'Atru.chr13.746' => 'acertr', 'Atru.chr2.2431' => 'acertr', 'Atru.chr9.2429' => 'acertr', 'AUR62005336' => 'cqu', 'AUR62013988' => 'cqu', 'AUR62019456' => 'cqu', 'AUR62036174' => 'cqu', 'BcaB04g20248' => 'bca', 'BcaB04g20941' => 'bca', 'BcaB05g22084' => 'bca', 'BcaB06g29547' => 'bca', 'BcaB07g31200' => 'bca', 'BcaC03g14375' => 'bca', 'BcaC04g20407' => 'bca', 'BcaC04g22216' => 'bca', 'BcaC09g48480' => 'bca', 'BcaC09g49437' => 'bca', 'BNapus_Darmor_BZH_scaffold_155p00050' => 'bna', 'BolC1t03635H' => 'bol', 'BolC1t04892H' => 'bol', 'BolC2t07918H' => 'bol', 'BolC5t33885H' => 'bol', 'BolC9t55110H' => 'bol', 'BolC9t57273H' => 'bol', 'BolC9t57274H' => 'bol', 'BraA01t02992Z' => 'bra', 'BraA02t06136Z' => 'bra', 'BraA05t22244Z' => 'bra', 'BraA09t37398Z' => 'bra', 'BraA10t43221Z' => 'bra', 'C01p36760' => 'bna', 'C01p49330' => 'bna', 'C02p17870' => 'bna', 'C05p52000' => 'bna', 'C09p22040' => 'bna', 'C09p43910' => 'bna', 'C09p43920' => 'bna', 'CAN.G162.40' => 'can', 'CAN.G1812.6' => 'can', 'CAN.G205.15' => 'can', 'CANSAT01G3002' => 'cansat', 'CANSAT25G0979' => 'cansat', 'CANSAT54G0487' => 'cansat', 'CANSAT56G0549' => 'cansat', 'CANSAT56G3346' => 'cansat', 'CARHR052890' => 'chi', 'CARHR090220' => 'chi', 'CARHR267020' => 'chi', 'Carub.0002s0519' => 'cru', 'Carub.0003s1489' => 'cru', 'Carub.0008s1420' => 'cru', 'Ca_03517_v3' => 'car', 'Ca_03524_v3' => 'car', 'Ca_04613_v3' => 'car', 'Ca_13258_v3' => 'car', 'Cc05_g11820' => 'ccan', 'Cc10_g04830' => 'ccan', 'Cc11_g14410' => 'ccan', 'CDE04G2883' => 'cde', 'CDE05G0758' => 'cde', 'CDE07G0583' => 'cde', 'Cfa009118' => 'cfa', 'Cfa020563' => 'cfa', 'Ciclev10001451m.g' => 'ccl', 'Ciclev10008806m.g' => 'ccl', 'Ciclev10031899m.g' => 'ccl', 'CiPaw.05G148000' => 'cil', 'CiPaw.06G073100' => 'cil', 'CiPaw.11G171600' => 'cil', 'CiPaw.12G119900' => 'cil', 'CiPaw.15G052300' => 'cil', 'CiPaw.16G038100' => 'cil', 'ClCG05G020180' => 'cla', 'ClCG05G025150' => 'cla', 'ClCG11G017910' => 'cla', 'COL.COLO4_10120' => 'col', 'COL.COLO4_19528' => 'col', 'COL.COLO4_36706' => 'col', 'Cpa.g.c43713' => 'cpa', 'Cpa.g.sc21.157' => 'cpa', 'Cpa.g.sc258.11' => 'cpa', 'CsaV3_4G033540' => 'csa', 'CsaV3_4G034660' => 'csa', 'CsaV3_5G031750' => 'csa', 'CSS0003344' => 'camsi', 'CSS0005710' => 'camsi', 'CSS0009867' => 'camsi', 'CSS0014920' => 'camsi', 'CSS0018356' => 'camsi', 'CSS0031711' => 'camsi', 'DCAR_008819' => 'dca', 'DCAR_019566' => 'dca', 'DCAR_024136' => 'dca', 'Dinv14933' => 'din', 'Dinv20192' => 'din', 'Dinv24887' => 'din', 'Dinv31014' => 'din', 'Dinv31088' => 'din', 'Dinv39273' => 'din', 'Duzib041G0015' => 'dzi', 'Duzib093G0671' => 'dzi', 'Duzib170G0308' => 'dzi', 'Duzib213G0312' => 'dzi', 'Duzib248G0333' => 'dzi', 'Duzib251G0903' => 'dzi', 'Duzib268G0972' => 'dzi', 'Duzib268G1447' => 'dzi', 'ECA233G5992' => 'eca', 'ECA234G1389' => 'eca', 'ECA234G2098' => 'eca', 'ECA240G3101' => 'eca', 'ECA247G1320' => 'eca', 'EL10Ac4g08223' => 'bvu', 'EL10Ac6g13639' => 'bvu', 'Eucgr.B03947' => 'egr', 'Eucgr.F02309' => 'egr', 'Eucgr.F03300' => 'egr', 'FAN07G2436' => 'fan', 'FAN11G2636' => 'fan', 'FAN12G1037' => 'fan', 'FAN15G0298' => 'fan', 'FAN16G0887' => 'fan', 'FAN17G2701' => 'fan', 'FAN20G2540' => 'fan', 'FAN21G3771' => 'fan', 'FAN22G0058' => 'fan', 'FAN24G0010' => 'fan', 'FAN25G0658' => 'fan', 'FAN27G0260' => 'fan', 'FvH4_2g33720' => 'fve', 'FvH4_3g19620' => 'fve', 'FvH4_4g34860' => 'fve', 'Glyma.01G032600' => 'gma', 'Glyma.02G032700' => 'gma', 'Glyma.04G041700' => 'gma', 'Glyma.06G042700' => 'gma', 'Glyma.06G238400' => 'gma', 'Glyma.08G289500' => 'gma', 'Glyma.12G163053' => 'gma', 'Glyma.12G226200' => 'gma', 'Glyma.13G274700' => 'gma', 'Glyma.17G238900' => 'gma', 'Gohir.A01G061600' => 'ghi', 'Gohir.A03G141300' => 'ghi', 'Gohir.A04G034100' => 'ghi', 'Gohir.A05G205400' => 'ghi', 'Gohir.D01G048200' => 'ghi', 'Gohir.D02G164200' => 'ghi', 'Gohir.D05G208700' => 'ghi', 'Gohir.D05G349100' => 'ghi', 'Gorai.002G068000' => 'gra', 'Gorai.005G184200' => 'gra', 'Gorai.009G215100' => 'gra', 'Gorai.009G378800' => 'gra', 'Gorai.009G379000' => 'gra', 'GSVIVG01007796001' => 'vvi', 'GSVIVG01009438001' => 'vvi', 'GSVIVG01014299001' => 'vvi', 'GSVIVG01020205001' => 'vvi', 'HanXRQChr08g0208861' => 'han', 'HanXRQChr10g0288171' => 'han', 'HanXRQChr10g0302671' => 'han', 'HanXRQChr12g0361151' => 'han', 'HanXRQChr12g0364051' => 'han', 'HanXRQChr12g0383401' => 'han', 'HanXRQChr17g0570241' => 'han', 'Haze_09449' => 'cav', 'Haze_12154' => 'cav', 'Haze_18071' => 'cav', 'Hma1.2p1_0387F.1_g141970' => 'hma', 'Hma1.2p1_0634F.1_g193015' => 'hma', 'Hma1.2p1_0634F.1_g193030' => 'hma', 'Hma1.2p1_1017F.1_g248320' => 'hma', 'HPP92_012426' => 'vpl', 'HPP92_014194' => 'vpl', 'HPP92_016978' => 'vpl', 'HPP92_018293' => 'vpl', 'HPP92_026450' => 'vpl', 'HPP92_027886' => 'vpl', 'Hund22865' => 'sun', 'Hund25331' => 'sun', 'Lalb_Chr03g0030741' => 'lal', 'Lalb_Chr05g0217071' => 'lal', 'Lalb_Chr16g0382411' => 'lal', 'Lalb_Chr19g0134141' => 'lal', 'Lalb_Chr20g0109551' => 'lal', 'Lalb_Chr23g0267271' => 'lal', 'Lj1A840T51' => 'lonja', 'Lj1g0009830' => 'lja', 'Lj2g0010221' => 'lja', 'Lj3g0000525' => 'lja', 'Lj3g0001154' => 'lja', 'Lj4A63T85' => 'lonja', 'Lj5g0015457' => 'lja', 'Lj6C802T7' => 'lonja', 'Lsat_1_v5_gn_1_22421' => 'lsa', 'Lsat_1_v5_gn_4_7141' => 'lsa', 'Lsat_1_v5_gn_5_128181' => 'lsa', 'Lsat_1_v5_gn_8_157561' => 'lsa', 'Lsat_1_v5_gn_9_98881' => 'lsa', 'Manes.01G198000' => 'mes', 'Manes.05G089000' => 'mes', 'Manes.05G177000' => 'mes', 'Manes.15G089000' => 'mes', 'Mapoly0104s0004' => 'mpo', 'Mapoly0104s0005' => 'mpo', 'Mapoly0123s0025' => 'mpo', 'MBI14_g17747_MAGBIO' => 'mbi', 'MBI18_g42039_MAGBIO' => 'mbi', 'MD03G1230900' => 'mdo', 'MD08G1093800' => 'mdo', 'MD11G1252200' => 'mdo', 'MD13G1088900' => 'mdo', 'MD15G1077500' => 'mdo', 'MD15G1077600' => 'mdo', 'MD16G1089000' => 'mdo', 'Medtr1g018810' => 'mtr', 'Medtr2g078750' => 'mtr', 'Medtr5g034840' => 'mtr', 'MELO3C012014.2' => 'cme', 'MELO3C016782.2' => 'cme', 'MELO3C025601.2' => 'cme', 'Migut.H01952' => 'egut', 'Migut.L01435' => 'egut', 'Migut.N02730' => 'egut', 'MSTRG.12896' => 'ama', 'MSTRG.14355' => 'ama', 'MSTRG.607' => 'ama', 'MSTRG.7879' => 'ama', 'MSTRG.7880' => 'ama', 'Nitab4.5_0000052g0280' => 'nta', 'Nitab4.5_0002198g0030' => 'nta', 'Nitab4.5_0002330g0070' => 'nta', 'Nitab4.5_0004339g0080' => 'nta', 'Nitab4.5_0005232g0020' => 'nta', 'Nitab4.5_0006003g0010' => 'nta', 'Nitab4.5_0007216g0010' => 'nta', 'Nitab4.5_0010118g0030' => 'nta', 'Nn1g04168' => 'nnu', 'Nn1g04739' => 'nnu', 'Nn1g06457' => 'nnu', 'Nn3g16940' => 'nnu', 'Nn4g22853' => 'nnu', 'Nn5g30389' => 'nnu', 'Oeu019304.1' => 'oeu', 'Oeu025363.1' => 'oeu', 'Oeu025438.1' => 'oeu', 'Oeu037368.2' => 'oeu', 'Oeu037614.1' => 'oeu', 'Oeu045702.1' => 'oeu', 'Oeu051080.1' => 'oeu', 'Os02g0742700' => 'osa', 'Os06g0233800' => 'osa', 'Os11g0446000' => 'osa', 'Peaxi162Scf00010g02017' => 'pax', 'Peaxi162Scf00069g01733' => 'pax', 'Peaxi162Scf00421g00027' => 'pax', 'Peaxi162Scf01087g00126' => 'pax', 'PGR031G1567' => 'pgr', 'PGR031G3595' => 'pgr', 'PGR119G1860' => 'pgr', 'PGSC0003DMG400004129' => 'stu', 'PGSC0003DMG400007946' => 'stu', 'PGSC0003DMG400012407' => 'stu', 'Phvul.002G072900' => 'pvu', 'Phvul.005G074200' => 'pvu', 'Phvul.009G067400' => 'pvu', 'Phvul.011G165100' => 'pvu', 'Potri.001G397800' => 'ptr', 'Potri.010G096400' => 'ptr', 'Potri.011G116400' => 'ptr', 'Potri.014G024000' => 'ptr', 'Pp3c12_11470' => 'ppa', 'Pp3c13_20820' => 'ppa', 'Pp3c1_42150' => 'ppa', 'Pp3c25_12410' => 'ppa', 'Pp3c26_3400' => 'ppa', 'Pp3c3_12640' => 'ppa', 'Pp3c3_34790' => 'ppa', 'Pp3c4_23320' => 'ppa', 'Pp3c4_6910' => 'ppa', 'Prupe.1G256900' => 'ppe', 'Prupe.1G430900' => 'ppe', 'Prupe.2G207300' => 'ppe', 'Prupe.4G176900' => 'ppe', 'Psat2g106960' => 'psa', 'Psat5g242000' => 'psa', 'Psat6g014880' => 'psa', 'PSO017G3926' => 'pso', 'PSO063G2642' => 'pso', 'PSO170G4588' => 'pso', 'PSO210G1092' => 'pso', 'PSO478G1608' => 'pso', 'PSO541G3729' => 'pso', 'PSO675G1360' => 'pso', 'PSO832G1990' => 'pso', 'QL02p003995' => 'qlo', 'QL03p061967' => 'qlo', 'QL08p022567' => 'qlo', 'QL10p013557' => 'qlo', 'QL10p013564' => 'qlo', 'RcHm_v2.0_Chr4g0400741' => 'rch', 'RcHm_v2.0_Chr4g0444251' => 'rch', 'RcHm_v2.0_Chr5g0032811' => 'rch', 'RcHm_v2.0_Chr6g0308831' => 'rch', 'Rhsim04G0022400' => 'rsi', 'Rhsim12G0048200' => 'rsi', 'Sabra10G0068900' => 'sbr', 'Sabra11G0102000' => 'sbr', 'SalBow2G1020' => 'sbo', 'SalBow2G1597' => 'sbo', 'SalBow6G2631' => 'sbo', 'SalBow6G3109' => 'sbo', 'SalBow7G3611' => 'sbo', 'SalBow8G1514' => 'sbo', 'Sc04g0008990' => 'sci', 'Sc16g0007140' => 'sci', 'Sed0005883' => 'sed', 'Sed0012647' => 'sed', 'Sed0016196' => 'sed', 'Sed0017133' => 'sed', 'Sed0018762' => 'sed', 'Sed0021786' => 'sed', 'SEGI_01970' => 'sgi', 'SEGI_17554' => 'sgi', 'SEGI_21541' => 'sgi', 'SEGI_22891' => 'sgi', 'SEGI_30140' => 'sgi', 'SEGI_36417' => 'sgi', 'SGA_v2.0_scaffold165G38267' => 'sas', 'SGA_v2.0_scaffold28G11799' => 'sas', 'SGA_v2.0_scaffold70G23685' => 'sas', 'SMO137G0196' => 'smo', 'SMO174G0215' => 'smo', 'Solyc04g078520.3' => 'sly', 'Solyc05g005810.4' => 'sly', 'Solyc07g062950.4' => 'sly', 'Sopen04g032120' => 'spe', 'Sopen05g001820' => 'spe', 'Sopen07g031140' => 'spe', 'Sp2g04540' => 'spa', 'Sp3g13440' => 'spa', 'Sp6g15960' => 'spa', 'TAR371G0388' => 'tar', 'TAR371G1038' => 'tar', 'TAR622G0528' => 'tar', 'TAR622G0690' => 'tar', 'TAR624G1297' => 'tar', 'TAR626G0865' => 'tar', 'TAR626G1901' => 'tar', 'TAR627G0630' => 'tar', 'TAR627G1086' => 'tar', 'TAR629G0767' => 'tar', 'THA.LOC104811873' => 'tha', 'THA.LOC104816749' => 'tha', 'THA.LOC104818088' => 'tha', 'THA.LOC104819471' => 'tha', 'Thecc.02G246600' => 'tca', 'Thecc.07G095300' => 'tca', 'Thecc.08G001600' => 'tca', 'Thhalv10013822m.g' => 'esa', 'Thhalv10020987m.g' => 'esa', 'Thhalv10023517m.g' => 'esa', 'TPR.G3780' => 'tpr', 'TPR.G39821' => 'tpr', 'TPR.G4430' => 'tpr', 'TWI38G0429' => 'twi', 'TWI38G1311' => 'twi', 'TWI56G0457' => 'twi', 'TWI75G0695' => 'twi', 'unitig_0.g2265' => 'ugi', 'unitig_22.g6470' => 'ugi', 'unitig_22.g6471' => 'ugi', 'unitig_26.g10337' => 'ugi', 'unitig_26.g9337' => 'ugi', 'unitig_8.g3171' => 'ugi', 'unitig_8.g3640' => 'ugi', 'vmacro01192' => 'vma', 'vmacro09525' => 'vma', 'vmacro16268' => 'vma', 'vmacro21488' => 'vma', 'vmacro22611' => 'vma', 'VMungo1080G0436' => 'vmu', 'VMungo1127G0098' => 'vmu', 'VMungo1215G0073' => 'vmu', 'VMungo1309G1863' => 'vmu', 'VMungo1309G2802' => 'vmu', 'Zm00001eb150820' => 'zma', 'Zm00001eb254280' => 'zma', 'Zm00001eb369540' => 'zma', 'Zm00001eb372130' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001464', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001464' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001464', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '433', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001464' ) ), 'genes' => array( 'A01p29040' => 'bna', 'A02p10750' => 'bna', 'A05p34240' => 'bna', 'A09p17700' => 'bna', 'A10p11290' => 'bna', 'Aa31LG2G10180' => 'aar', 'Aa31LG3G10040' => 'aar', 'Aa31LG8G2430' => 'aar', 'Actinidia01084' => 'ach', 'Actinidia08175' => 'ach', 'Actinidia15025' => 'ach', 'Actinidia18775' => 'ach', 'Actinidia22655' => 'ach', 'Actinidia27774' => 'ach', 'Actinidia32591' => 'ach', 'Actinidia35242' => 'ach', 'Ah.02g129740' => 'amhyb', 'Ah.04g164710' => 'amhyb', 'AL2G16630' => 'aly', 'AL3G27630' => 'aly', 'AL8G28980' => 'aly', 'Aqoxy1G02343' => 'aox', 'Aqoxy3G00949' => 'aox', 'Aqoxy3G03050' => 'aox', 'Aqoxy4G00711' => 'aox', 'Aqoxy5G01167_Aqoxy5G01168' => 'aox', 'arahy.Tifrunner.gnm1.ann1.D71PUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS6UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1NYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT2E5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRGB4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RD9LCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7VZNI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFL0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZL1FCV' => 'arhy', 'AT1G60060' => 'ath', 'AT3G15240' => 'ath', 'AT5G53900' => 'ath', 'ATR0580G446' => 'atr', 'ATR1094G020' => 'atr', 'ATR1149G003' => 'atr', 'Atru.chr11.1992' => 'acertr', 'Atru.chr13.746' => 'acertr', 'Atru.chr2.2431' => 'acertr', 'Atru.chr9.2429' => 'acertr', 'AUR62005336' => 'cqu', 'AUR62013988' => 'cqu', 'AUR62019456' => 'cqu', 'AUR62036174' => 'cqu', 'BcaB04g20248' => 'bca', 'BcaB04g20941' => 'bca', 'BcaB05g22084' => 'bca', 'BcaB06g29547' => 'bca', 'BcaB07g31200' => 'bca', 'BcaC03g14375' => 'bca', 'BcaC04g20407' => 'bca', 'BcaC04g22216' => 'bca', 'BcaC09g48480' => 'bca', 'BcaC09g49437' => 'bca', 'BNapus_Darmor_BZH_scaffold_155p00050' => 'bna', 'BolC1t03635H' => 'bol', 'BolC1t04892H' => 'bol', 'BolC2t07918H' => 'bol', 'BolC5t33885H' => 'bol', 'BolC9t55110H' => 'bol', 'BolC9t57273H' => 'bol', 'BolC9t57274H' => 'bol', 'BraA01t02992Z' => 'bra', 'BraA02t06136Z' => 'bra', 'BraA05t22244Z' => 'bra', 'BraA09t37398Z' => 'bra', 'BraA10t43221Z' => 'bra', 'C01p36760' => 'bna', 'C01p49330' => 'bna', 'C02p17870' => 'bna', 'C05p52000' => 'bna', 'C09p22040' => 'bna', 'C09p43910' => 'bna', 'C09p43920' => 'bna', 'CAN.G162.40' => 'can', 'CAN.G1812.6' => 'can', 'CAN.G205.15' => 'can', 'CANSAT01G3002' => 'cansat', 'CANSAT25G0979' => 'cansat', 'CANSAT54G0487' => 'cansat', 'CANSAT56G0549' => 'cansat', 'CANSAT56G3346' => 'cansat', 'CARHR052890' => 'chi', 'CARHR090220' => 'chi', 'CARHR267020' => 'chi', 'Carub.0002s0519' => 'cru', 'Carub.0003s1489' => 'cru', 'Carub.0008s1420' => 'cru', 'Ca_03517_v3' => 'car', 'Ca_03524_v3' => 'car', 'Ca_04613_v3' => 'car', 'Ca_13258_v3' => 'car', 'Cc05_g11820' => 'ccan', 'Cc10_g04830' => 'ccan', 'Cc11_g14410' => 'ccan', 'CDE04G2883' => 'cde', 'CDE05G0758' => 'cde', 'CDE07G0583' => 'cde', 'Cfa009118' => 'cfa', 'Cfa020563' => 'cfa', 'Ciclev10001451m.g' => 'ccl', 'Ciclev10008806m.g' => 'ccl', 'Ciclev10031899m.g' => 'ccl', 'CiPaw.05G148000' => 'cil', 'CiPaw.06G073100' => 'cil', 'CiPaw.11G171600' => 'cil', 'CiPaw.12G119900' => 'cil', 'CiPaw.15G052300' => 'cil', 'CiPaw.16G038100' => 'cil', 'ClCG05G020180' => 'cla', 'ClCG05G025150' => 'cla', 'ClCG11G017910' => 'cla', 'COL.COLO4_10120' => 'col', 'COL.COLO4_19528' => 'col', 'COL.COLO4_36706' => 'col', 'Cpa.g.c43713' => 'cpa', 'Cpa.g.sc21.157' => 'cpa', 'Cpa.g.sc258.11' => 'cpa', 'CsaV3_4G033540' => 'csa', 'CsaV3_4G034660' => 'csa', 'CsaV3_5G031750' => 'csa', 'CSS0003344' => 'camsi', 'CSS0005710' => 'camsi', 'CSS0009867' => 'camsi', 'CSS0014920' => 'camsi', 'CSS0018356' => 'camsi', 'CSS0031711' => 'camsi', 'DCAR_008819' => 'dca', 'DCAR_019566' => 'dca', 'DCAR_024136' => 'dca', 'Dinv14933' => 'din', 'Dinv20192' => 'din', 'Dinv24887' => 'din', 'Dinv31014' => 'din', 'Dinv31088' => 'din', 'Dinv39273' => 'din', 'Duzib041G0015' => 'dzi', 'Duzib093G0671' => 'dzi', 'Duzib170G0308' => 'dzi', 'Duzib213G0312' => 'dzi', 'Duzib248G0333' => 'dzi', 'Duzib251G0903' => 'dzi', 'Duzib268G0972' => 'dzi', 'Duzib268G1447' => 'dzi', 'ECA233G5992' => 'eca', 'ECA234G1389' => 'eca', 'ECA234G2098' => 'eca', 'ECA240G3101' => 'eca', 'ECA247G1320' => 'eca', 'EL10Ac4g08223' => 'bvu', 'EL10Ac6g13639' => 'bvu', 'Eucgr.B03947' => 'egr', 'Eucgr.F02309' => 'egr', 'Eucgr.F03300' => 'egr', 'FAN07G2436' => 'fan', 'FAN11G2636' => 'fan', 'FAN12G1037' => 'fan', 'FAN15G0298' => 'fan', 'FAN16G0887' => 'fan', 'FAN17G2701' => 'fan', 'FAN20G2540' => 'fan', 'FAN21G3771' => 'fan', 'FAN22G0058' => 'fan', 'FAN24G0010' => 'fan', 'FAN25G0658' => 'fan', 'FAN27G0260' => 'fan', 'FvH4_2g33720' => 'fve', 'FvH4_3g19620' => 'fve', 'FvH4_4g34860' => 'fve', 'Glyma.01G032600' => 'gma', 'Glyma.02G032700' => 'gma', 'Glyma.04G041700' => 'gma', 'Glyma.06G042700' => 'gma', 'Glyma.06G238400' => 'gma', 'Glyma.08G289500' => 'gma', 'Glyma.12G163053' => 'gma', 'Glyma.12G226200' => 'gma', 'Glyma.13G274700' => 'gma', 'Glyma.17G238900' => 'gma', 'Gohir.A01G061600' => 'ghi', 'Gohir.A03G141300' => 'ghi', 'Gohir.A04G034100' => 'ghi', 'Gohir.A05G205400' => 'ghi', 'Gohir.D01G048200' => 'ghi', 'Gohir.D02G164200' => 'ghi', 'Gohir.D05G208700' => 'ghi', 'Gohir.D05G349100' => 'ghi', 'Gorai.002G068000' => 'gra', 'Gorai.005G184200' => 'gra', 'Gorai.009G215100' => 'gra', 'Gorai.009G378800' => 'gra', 'Gorai.009G379000' => 'gra', 'GSVIVG01007796001' => 'vvi', 'GSVIVG01009438001' => 'vvi', 'GSVIVG01014299001' => 'vvi', 'GSVIVG01020205001' => 'vvi', 'HanXRQChr08g0208861' => 'han', 'HanXRQChr10g0288171' => 'han', 'HanXRQChr10g0302671' => 'han', 'HanXRQChr12g0361151' => 'han', 'HanXRQChr12g0364051' => 'han', 'HanXRQChr12g0383401' => 'han', 'HanXRQChr17g0570241' => 'han', 'Haze_09449' => 'cav', 'Haze_12154' => 'cav', 'Haze_18071' => 'cav', 'Hma1.2p1_0387F.1_g141970' => 'hma', 'Hma1.2p1_0634F.1_g193015' => 'hma', 'Hma1.2p1_0634F.1_g193030' => 'hma', 'Hma1.2p1_1017F.1_g248320' => 'hma', 'HPP92_012426' => 'vpl', 'HPP92_014194' => 'vpl', 'HPP92_016978' => 'vpl', 'HPP92_018293' => 'vpl', 'HPP92_026450' => 'vpl', 'HPP92_027886' => 'vpl', 'Hund22865' => 'sun', 'Hund25331' => 'sun', 'Lalb_Chr03g0030741' => 'lal', 'Lalb_Chr05g0217071' => 'lal', 'Lalb_Chr16g0382411' => 'lal', 'Lalb_Chr19g0134141' => 'lal', 'Lalb_Chr20g0109551' => 'lal', 'Lalb_Chr23g0267271' => 'lal', 'Lj1A840T51' => 'lonja', 'Lj1g0009830' => 'lja', 'Lj2g0010221' => 'lja', 'Lj3g0000525' => 'lja', 'Lj3g0001154' => 'lja', 'Lj4A63T85' => 'lonja', 'Lj5g0015457' => 'lja', 'Lj6C802T7' => 'lonja', 'Lsat_1_v5_gn_1_22421' => 'lsa', 'Lsat_1_v5_gn_4_7141' => 'lsa', 'Lsat_1_v5_gn_5_128181' => 'lsa', 'Lsat_1_v5_gn_8_157561' => 'lsa', 'Lsat_1_v5_gn_9_98881' => 'lsa', 'Manes.01G198000' => 'mes', 'Manes.05G089000' => 'mes', 'Manes.05G177000' => 'mes', 'Manes.15G089000' => 'mes', 'Mapoly0104s0004' => 'mpo', 'Mapoly0104s0005' => 'mpo', 'Mapoly0123s0025' => 'mpo', 'MBI14_g17747_MAGBIO' => 'mbi', 'MBI18_g42039_MAGBIO' => 'mbi', 'MD03G1230900' => 'mdo', 'MD08G1093800' => 'mdo', 'MD11G1252200' => 'mdo', 'MD13G1088900' => 'mdo', 'MD15G1077500' => 'mdo', 'MD15G1077600' => 'mdo', 'MD16G1089000' => 'mdo', 'Medtr1g018810' => 'mtr', 'Medtr2g078750' => 'mtr', 'Medtr5g034840' => 'mtr', 'MELO3C012014.2' => 'cme', 'MELO3C016782.2' => 'cme', 'MELO3C025601.2' => 'cme', 'Migut.H01952' => 'egut', 'Migut.L01435' => 'egut', 'Migut.N02730' => 'egut', 'MSTRG.12896' => 'ama', 'MSTRG.14355' => 'ama', 'MSTRG.607' => 'ama', 'MSTRG.7879' => 'ama', 'MSTRG.7880' => 'ama', 'Nitab4.5_0000052g0280' => 'nta', 'Nitab4.5_0002198g0030' => 'nta', 'Nitab4.5_0002330g0070' => 'nta', 'Nitab4.5_0004339g0080' => 'nta', 'Nitab4.5_0005232g0020' => 'nta', 'Nitab4.5_0006003g0010' => 'nta', 'Nitab4.5_0007216g0010' => 'nta', 'Nitab4.5_0010118g0030' => 'nta', 'Nn1g04168' => 'nnu', 'Nn1g04739' => 'nnu', 'Nn1g06457' => 'nnu', 'Nn3g16940' => 'nnu', 'Nn4g22853' => 'nnu', 'Nn5g30389' => 'nnu', 'Oeu019304.1' => 'oeu', 'Oeu025363.1' => 'oeu', 'Oeu025438.1' => 'oeu', 'Oeu037368.2' => 'oeu', 'Oeu037614.1' => 'oeu', 'Oeu045702.1' => 'oeu', 'Oeu051080.1' => 'oeu', 'Os02g0742700' => 'osa', 'Os06g0233800' => 'osa', 'Os11g0446000' => 'osa', 'Peaxi162Scf00010g02017' => 'pax', 'Peaxi162Scf00069g01733' => 'pax', 'Peaxi162Scf00421g00027' => 'pax', 'Peaxi162Scf01087g00126' => 'pax', 'PGR031G1567' => 'pgr', 'PGR031G3595' => 'pgr', 'PGR119G1860' => 'pgr', 'PGSC0003DMG400004129' => 'stu', 'PGSC0003DMG400007946' => 'stu', 'PGSC0003DMG400012407' => 'stu', 'Phvul.002G072900' => 'pvu', 'Phvul.005G074200' => 'pvu', 'Phvul.009G067400' => 'pvu', 'Phvul.011G165100' => 'pvu', 'Potri.001G397800' => 'ptr', 'Potri.010G096400' => 'ptr', 'Potri.011G116400' => 'ptr', 'Potri.014G024000' => 'ptr', 'Pp3c12_11470' => 'ppa', 'Pp3c13_20820' => 'ppa', 'Pp3c1_42150' => 'ppa', 'Pp3c25_12410' => 'ppa', 'Pp3c26_3400' => 'ppa', 'Pp3c3_12640' => 'ppa', 'Pp3c3_34790' => 'ppa', 'Pp3c4_23320' => 'ppa', 'Pp3c4_6910' => 'ppa', 'Prupe.1G256900' => 'ppe', 'Prupe.1G430900' => 'ppe', 'Prupe.2G207300' => 'ppe', 'Prupe.4G176900' => 'ppe', 'Psat2g106960' => 'psa', 'Psat5g242000' => 'psa', 'Psat6g014880' => 'psa', 'PSO017G3926' => 'pso', 'PSO063G2642' => 'pso', 'PSO170G4588' => 'pso', 'PSO210G1092' => 'pso', 'PSO478G1608' => 'pso', 'PSO541G3729' => 'pso', 'PSO675G1360' => 'pso', 'PSO832G1990' => 'pso', 'QL02p003995' => 'qlo', 'QL03p061967' => 'qlo', 'QL08p022567' => 'qlo', 'QL10p013557' => 'qlo', 'QL10p013564' => 'qlo', 'RcHm_v2.0_Chr4g0400741' => 'rch', 'RcHm_v2.0_Chr4g0444251' => 'rch', 'RcHm_v2.0_Chr5g0032811' => 'rch', 'RcHm_v2.0_Chr6g0308831' => 'rch', 'Rhsim04G0022400' => 'rsi', 'Rhsim12G0048200' => 'rsi', 'Sabra10G0068900' => 'sbr', 'Sabra11G0102000' => 'sbr', 'SalBow2G1020' => 'sbo', 'SalBow2G1597' => 'sbo', 'SalBow6G2631' => 'sbo', 'SalBow6G3109' => 'sbo', 'SalBow7G3611' => 'sbo', 'SalBow8G1514' => 'sbo', 'Sc04g0008990' => 'sci', 'Sc16g0007140' => 'sci', 'Sed0005883' => 'sed', 'Sed0012647' => 'sed', 'Sed0016196' => 'sed', 'Sed0017133' => 'sed', 'Sed0018762' => 'sed', 'Sed0021786' => 'sed', 'SEGI_01970' => 'sgi', 'SEGI_17554' => 'sgi', 'SEGI_21541' => 'sgi', 'SEGI_22891' => 'sgi', 'SEGI_30140' => 'sgi', 'SEGI_36417' => 'sgi', 'SGA_v2.0_scaffold165G38267' => 'sas', 'SGA_v2.0_scaffold28G11799' => 'sas', 'SGA_v2.0_scaffold70G23685' => 'sas', 'SMO137G0196' => 'smo', 'SMO174G0215' => 'smo', 'Solyc04g078520.3' => 'sly', 'Solyc05g005810.4' => 'sly', 'Solyc07g062950.4' => 'sly', 'Sopen04g032120' => 'spe', 'Sopen05g001820' => 'spe', 'Sopen07g031140' => 'spe', 'Sp2g04540' => 'spa', 'Sp3g13440' => 'spa', 'Sp6g15960' => 'spa', 'TAR371G0388' => 'tar', 'TAR371G1038' => 'tar', 'TAR622G0528' => 'tar', 'TAR622G0690' => 'tar', 'TAR624G1297' => 'tar', 'TAR626G0865' => 'tar', 'TAR626G1901' => 'tar', 'TAR627G0630' => 'tar', 'TAR627G1086' => 'tar', 'TAR629G0767' => 'tar', 'THA.LOC104811873' => 'tha', 'THA.LOC104816749' => 'tha', 'THA.LOC104818088' => 'tha', 'THA.LOC104819471' => 'tha', 'Thecc.02G246600' => 'tca', 'Thecc.07G095300' => 'tca', 'Thecc.08G001600' => 'tca', 'Thhalv10013822m.g' => 'esa', 'Thhalv10020987m.g' => 'esa', 'Thhalv10023517m.g' => 'esa', 'TPR.G3780' => 'tpr', 'TPR.G39821' => 'tpr', 'TPR.G4430' => 'tpr', 'TWI38G0429' => 'twi', 'TWI38G1311' => 'twi', 'TWI56G0457' => 'twi', 'TWI75G0695' => 'twi', 'unitig_0.g2265' => 'ugi', 'unitig_22.g6470' => 'ugi', 'unitig_22.g6471' => 'ugi', 'unitig_26.g10337' => 'ugi', 'unitig_26.g9337' => 'ugi', 'unitig_8.g3171' => 'ugi', 'unitig_8.g3640' => 'ugi', 'vmacro01192' => 'vma', 'vmacro09525' => 'vma', 'vmacro16268' => 'vma', 'vmacro21488' => 'vma', 'vmacro22611' => 'vma', 'VMungo1080G0436' => 'vmu', 'VMungo1127G0098' => 'vmu', 'VMungo1215G0073' => 'vmu', 'VMungo1309G1863' => 'vmu', 'VMungo1309G2802' => 'vmu', 'Zm00001eb150820' => 'zma', 'Zm00001eb254280' => 'zma', 'Zm00001eb369540' => 'zma', 'Zm00001eb372130' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001464' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001464' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001464' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001464' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001464', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '433', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p29040' => 'bna', 'A02p10750' => 'bna', 'A05p34240' => 'bna', 'A09p17700' => 'bna', 'A10p11290' => 'bna', 'Aa31LG2G10180' => 'aar', 'Aa31LG3G10040' => 'aar', 'Aa31LG8G2430' => 'aar', 'Actinidia01084' => 'ach', 'Actinidia08175' => 'ach', 'Actinidia15025' => 'ach', 'Actinidia18775' => 'ach', 'Actinidia22655' => 'ach', 'Actinidia27774' => 'ach', 'Actinidia32591' => 'ach', 'Actinidia35242' => 'ach', 'Ah.02g129740' => 'amhyb', 'Ah.04g164710' => 'amhyb', 'AL2G16630' => 'aly', 'AL3G27630' => 'aly', 'AL8G28980' => 'aly', 'Aqoxy1G02343' => 'aox', 'Aqoxy3G00949' => 'aox', 'Aqoxy3G03050' => 'aox', 'Aqoxy4G00711' => 'aox', 'Aqoxy5G01167_Aqoxy5G01168' => 'aox', 'arahy.Tifrunner.gnm1.ann1.D71PUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS6UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1NYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT2E5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRGB4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RD9LCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7VZNI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFL0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZL1FCV' => 'arhy', 'AT1G60060' => 'ath', 'AT3G15240' => 'ath', 'AT5G53900' => 'ath', 'ATR0580G446' => 'atr', 'ATR1094G020' => 'atr', 'ATR1149G003' => 'atr', 'Atru.chr11.1992' => 'acertr', 'Atru.chr13.746' => 'acertr', 'Atru.chr2.2431' => 'acertr', 'Atru.chr9.2429' => 'acertr', 'AUR62005336' => 'cqu', 'AUR62013988' => 'cqu', 'AUR62019456' => 'cqu', 'AUR62036174' => 'cqu', 'BcaB04g20248' => 'bca', 'BcaB04g20941' => 'bca', 'BcaB05g22084' => 'bca', 'BcaB06g29547' => 'bca', 'BcaB07g31200' => 'bca', 'BcaC03g14375' => 'bca', 'BcaC04g20407' => 'bca', 'BcaC04g22216' => 'bca', 'BcaC09g48480' => 'bca', 'BcaC09g49437' => 'bca', 'BNapus_Darmor_BZH_scaffold_155p00050' => 'bna', 'BolC1t03635H' => 'bol', 'BolC1t04892H' => 'bol', 'BolC2t07918H' => 'bol', 'BolC5t33885H' => 'bol', 'BolC9t55110H' => 'bol', 'BolC9t57273H' => 'bol', 'BolC9t57274H' => 'bol', 'BraA01t02992Z' => 'bra', 'BraA02t06136Z' => 'bra', 'BraA05t22244Z' => 'bra', 'BraA09t37398Z' => 'bra', 'BraA10t43221Z' => 'bra', 'C01p36760' => 'bna', 'C01p49330' => 'bna', 'C02p17870' => 'bna', 'C05p52000' => 'bna', 'C09p22040' => 'bna', 'C09p43910' => 'bna', 'C09p43920' => 'bna', 'CAN.G162.40' => 'can', 'CAN.G1812.6' => 'can', 'CAN.G205.15' => 'can', 'CANSAT01G3002' => 'cansat', 'CANSAT25G0979' => 'cansat', 'CANSAT54G0487' => 'cansat', 'CANSAT56G0549' => 'cansat', 'CANSAT56G3346' => 'cansat', 'CARHR052890' => 'chi', 'CARHR090220' => 'chi', 'CARHR267020' => 'chi', 'Carub.0002s0519' => 'cru', 'Carub.0003s1489' => 'cru', 'Carub.0008s1420' => 'cru', 'Ca_03517_v3' => 'car', 'Ca_03524_v3' => 'car', 'Ca_04613_v3' => 'car', 'Ca_13258_v3' => 'car', 'Cc05_g11820' => 'ccan', 'Cc10_g04830' => 'ccan', 'Cc11_g14410' => 'ccan', 'CDE04G2883' => 'cde', 'CDE05G0758' => 'cde', 'CDE07G0583' => 'cde', 'Cfa009118' => 'cfa', 'Cfa020563' => 'cfa', 'Ciclev10001451m.g' => 'ccl', 'Ciclev10008806m.g' => 'ccl', 'Ciclev10031899m.g' => 'ccl', 'CiPaw.05G148000' => 'cil', 'CiPaw.06G073100' => 'cil', 'CiPaw.11G171600' => 'cil', 'CiPaw.12G119900' => 'cil', 'CiPaw.15G052300' => 'cil', 'CiPaw.16G038100' => 'cil', 'ClCG05G020180' => 'cla', 'ClCG05G025150' => 'cla', 'ClCG11G017910' => 'cla', 'COL.COLO4_10120' => 'col', 'COL.COLO4_19528' => 'col', 'COL.COLO4_36706' => 'col', 'Cpa.g.c43713' => 'cpa', 'Cpa.g.sc21.157' => 'cpa', 'Cpa.g.sc258.11' => 'cpa', 'CsaV3_4G033540' => 'csa', 'CsaV3_4G034660' => 'csa', 'CsaV3_5G031750' => 'csa', 'CSS0003344' => 'camsi', 'CSS0005710' => 'camsi', 'CSS0009867' => 'camsi', 'CSS0014920' => 'camsi', 'CSS0018356' => 'camsi', 'CSS0031711' => 'camsi', 'DCAR_008819' => 'dca', 'DCAR_019566' => 'dca', 'DCAR_024136' => 'dca', 'Dinv14933' => 'din', 'Dinv20192' => 'din', 'Dinv24887' => 'din', 'Dinv31014' => 'din', 'Dinv31088' => 'din', 'Dinv39273' => 'din', 'Duzib041G0015' => 'dzi', 'Duzib093G0671' => 'dzi', 'Duzib170G0308' => 'dzi', 'Duzib213G0312' => 'dzi', 'Duzib248G0333' => 'dzi', 'Duzib251G0903' => 'dzi', 'Duzib268G0972' => 'dzi', 'Duzib268G1447' => 'dzi', 'ECA233G5992' => 'eca', 'ECA234G1389' => 'eca', 'ECA234G2098' => 'eca', 'ECA240G3101' => 'eca', 'ECA247G1320' => 'eca', 'EL10Ac4g08223' => 'bvu', 'EL10Ac6g13639' => 'bvu', 'Eucgr.B03947' => 'egr', 'Eucgr.F02309' => 'egr', 'Eucgr.F03300' => 'egr', 'FAN07G2436' => 'fan', 'FAN11G2636' => 'fan', 'FAN12G1037' => 'fan', 'FAN15G0298' => 'fan', 'FAN16G0887' => 'fan', 'FAN17G2701' => 'fan', 'FAN20G2540' => 'fan', 'FAN21G3771' => 'fan', 'FAN22G0058' => 'fan', 'FAN24G0010' => 'fan', 'FAN25G0658' => 'fan', 'FAN27G0260' => 'fan', 'FvH4_2g33720' => 'fve', 'FvH4_3g19620' => 'fve', 'FvH4_4g34860' => 'fve', 'Glyma.01G032600' => 'gma', 'Glyma.02G032700' => 'gma', 'Glyma.04G041700' => 'gma', 'Glyma.06G042700' => 'gma', 'Glyma.06G238400' => 'gma', 'Glyma.08G289500' => 'gma', 'Glyma.12G163053' => 'gma', 'Glyma.12G226200' => 'gma', 'Glyma.13G274700' => 'gma', 'Glyma.17G238900' => 'gma', 'Gohir.A01G061600' => 'ghi', 'Gohir.A03G141300' => 'ghi', 'Gohir.A04G034100' => 'ghi', 'Gohir.A05G205400' => 'ghi', 'Gohir.D01G048200' => 'ghi', 'Gohir.D02G164200' => 'ghi', 'Gohir.D05G208700' => 'ghi', 'Gohir.D05G349100' => 'ghi', 'Gorai.002G068000' => 'gra', 'Gorai.005G184200' => 'gra', 'Gorai.009G215100' => 'gra', 'Gorai.009G378800' => 'gra', 'Gorai.009G379000' => 'gra', 'GSVIVG01007796001' => 'vvi', 'GSVIVG01009438001' => 'vvi', 'GSVIVG01014299001' => 'vvi', 'GSVIVG01020205001' => 'vvi', 'HanXRQChr08g0208861' => 'han', 'HanXRQChr10g0288171' => 'han', 'HanXRQChr10g0302671' => 'han', 'HanXRQChr12g0361151' => 'han', 'HanXRQChr12g0364051' => 'han', 'HanXRQChr12g0383401' => 'han', 'HanXRQChr17g0570241' => 'han', 'Haze_09449' => 'cav', 'Haze_12154' => 'cav', 'Haze_18071' => 'cav', 'Hma1.2p1_0387F.1_g141970' => 'hma', 'Hma1.2p1_0634F.1_g193015' => 'hma', 'Hma1.2p1_0634F.1_g193030' => 'hma', 'Hma1.2p1_1017F.1_g248320' => 'hma', 'HPP92_012426' => 'vpl', 'HPP92_014194' => 'vpl', 'HPP92_016978' => 'vpl', 'HPP92_018293' => 'vpl', 'HPP92_026450' => 'vpl', 'HPP92_027886' => 'vpl', 'Hund22865' => 'sun', 'Hund25331' => 'sun', 'Lalb_Chr03g0030741' => 'lal', 'Lalb_Chr05g0217071' => 'lal', 'Lalb_Chr16g0382411' => 'lal', 'Lalb_Chr19g0134141' => 'lal', 'Lalb_Chr20g0109551' => 'lal', 'Lalb_Chr23g0267271' => 'lal', 'Lj1A840T51' => 'lonja', 'Lj1g0009830' => 'lja', 'Lj2g0010221' => 'lja', 'Lj3g0000525' => 'lja', 'Lj3g0001154' => 'lja', 'Lj4A63T85' => 'lonja', 'Lj5g0015457' => 'lja', 'Lj6C802T7' => 'lonja', 'Lsat_1_v5_gn_1_22421' => 'lsa', 'Lsat_1_v5_gn_4_7141' => 'lsa', 'Lsat_1_v5_gn_5_128181' => 'lsa', 'Lsat_1_v5_gn_8_157561' => 'lsa', 'Lsat_1_v5_gn_9_98881' => 'lsa', 'Manes.01G198000' => 'mes', 'Manes.05G089000' => 'mes', 'Manes.05G177000' => 'mes', 'Manes.15G089000' => 'mes', 'Mapoly0104s0004' => 'mpo', 'Mapoly0104s0005' => 'mpo', 'Mapoly0123s0025' => 'mpo', 'MBI14_g17747_MAGBIO' => 'mbi', 'MBI18_g42039_MAGBIO' => 'mbi', 'MD03G1230900' => 'mdo', 'MD08G1093800' => 'mdo', 'MD11G1252200' => 'mdo', 'MD13G1088900' => 'mdo', 'MD15G1077500' => 'mdo', 'MD15G1077600' => 'mdo', 'MD16G1089000' => 'mdo', 'Medtr1g018810' => 'mtr', 'Medtr2g078750' => 'mtr', 'Medtr5g034840' => 'mtr', 'MELO3C012014.2' => 'cme', 'MELO3C016782.2' => 'cme', 'MELO3C025601.2' => 'cme', 'Migut.H01952' => 'egut', 'Migut.L01435' => 'egut', 'Migut.N02730' => 'egut', 'MSTRG.12896' => 'ama', 'MSTRG.14355' => 'ama', 'MSTRG.607' => 'ama', 'MSTRG.7879' => 'ama', 'MSTRG.7880' => 'ama', 'Nitab4.5_0000052g0280' => 'nta', 'Nitab4.5_0002198g0030' => 'nta', 'Nitab4.5_0002330g0070' => 'nta', 'Nitab4.5_0004339g0080' => 'nta', 'Nitab4.5_0005232g0020' => 'nta', 'Nitab4.5_0006003g0010' => 'nta', 'Nitab4.5_0007216g0010' => 'nta', 'Nitab4.5_0010118g0030' => 'nta', 'Nn1g04168' => 'nnu', 'Nn1g04739' => 'nnu', 'Nn1g06457' => 'nnu', 'Nn3g16940' => 'nnu', 'Nn4g22853' => 'nnu', 'Nn5g30389' => 'nnu', 'Oeu019304.1' => 'oeu', 'Oeu025363.1' => 'oeu', 'Oeu025438.1' => 'oeu', 'Oeu037368.2' => 'oeu', 'Oeu037614.1' => 'oeu', 'Oeu045702.1' => 'oeu', 'Oeu051080.1' => 'oeu', 'Os02g0742700' => 'osa', 'Os06g0233800' => 'osa', 'Os11g0446000' => 'osa', 'Peaxi162Scf00010g02017' => 'pax', 'Peaxi162Scf00069g01733' => 'pax', 'Peaxi162Scf00421g00027' => 'pax', 'Peaxi162Scf01087g00126' => 'pax', 'PGR031G1567' => 'pgr', 'PGR031G3595' => 'pgr', 'PGR119G1860' => 'pgr', 'PGSC0003DMG400004129' => 'stu', 'PGSC0003DMG400007946' => 'stu', 'PGSC0003DMG400012407' => 'stu', 'Phvul.002G072900' => 'pvu', 'Phvul.005G074200' => 'pvu', 'Phvul.009G067400' => 'pvu', 'Phvul.011G165100' => 'pvu', 'Potri.001G397800' => 'ptr', 'Potri.010G096400' => 'ptr', 'Potri.011G116400' => 'ptr', 'Potri.014G024000' => 'ptr', 'Pp3c12_11470' => 'ppa', 'Pp3c13_20820' => 'ppa', 'Pp3c1_42150' => 'ppa', 'Pp3c25_12410' => 'ppa', 'Pp3c26_3400' => 'ppa', 'Pp3c3_12640' => 'ppa', 'Pp3c3_34790' => 'ppa', 'Pp3c4_23320' => 'ppa', 'Pp3c4_6910' => 'ppa', 'Prupe.1G256900' => 'ppe', 'Prupe.1G430900' => 'ppe', 'Prupe.2G207300' => 'ppe', 'Prupe.4G176900' => 'ppe', 'Psat2g106960' => 'psa', 'Psat5g242000' => 'psa', 'Psat6g014880' => 'psa', 'PSO017G3926' => 'pso', 'PSO063G2642' => 'pso', 'PSO170G4588' => 'pso', 'PSO210G1092' => 'pso', 'PSO478G1608' => 'pso', 'PSO541G3729' => 'pso', 'PSO675G1360' => 'pso', 'PSO832G1990' => 'pso', 'QL02p003995' => 'qlo', 'QL03p061967' => 'qlo', 'QL08p022567' => 'qlo', 'QL10p013557' => 'qlo', 'QL10p013564' => 'qlo', 'RcHm_v2.0_Chr4g0400741' => 'rch', 'RcHm_v2.0_Chr4g0444251' => 'rch', 'RcHm_v2.0_Chr5g0032811' => 'rch', 'RcHm_v2.0_Chr6g0308831' => 'rch', 'Rhsim04G0022400' => 'rsi', 'Rhsim12G0048200' => 'rsi', 'Sabra10G0068900' => 'sbr', 'Sabra11G0102000' => 'sbr', 'SalBow2G1020' => 'sbo', 'SalBow2G1597' => 'sbo', 'SalBow6G2631' => 'sbo', 'SalBow6G3109' => 'sbo', 'SalBow7G3611' => 'sbo', 'SalBow8G1514' => 'sbo', 'Sc04g0008990' => 'sci', 'Sc16g0007140' => 'sci', 'Sed0005883' => 'sed', 'Sed0012647' => 'sed', 'Sed0016196' => 'sed', 'Sed0017133' => 'sed', 'Sed0018762' => 'sed', 'Sed0021786' => 'sed', 'SEGI_01970' => 'sgi', 'SEGI_17554' => 'sgi', 'SEGI_21541' => 'sgi', 'SEGI_22891' => 'sgi', 'SEGI_30140' => 'sgi', 'SEGI_36417' => 'sgi', 'SGA_v2.0_scaffold165G38267' => 'sas', 'SGA_v2.0_scaffold28G11799' => 'sas', 'SGA_v2.0_scaffold70G23685' => 'sas', 'SMO137G0196' => 'smo', 'SMO174G0215' => 'smo', 'Solyc04g078520.3' => 'sly', 'Solyc05g005810.4' => 'sly', 'Solyc07g062950.4' => 'sly', 'Sopen04g032120' => 'spe', 'Sopen05g001820' => 'spe', 'Sopen07g031140' => 'spe', 'Sp2g04540' => 'spa', 'Sp3g13440' => 'spa', 'Sp6g15960' => 'spa', 'TAR371G0388' => 'tar', 'TAR371G1038' => 'tar', 'TAR622G0528' => 'tar', 'TAR622G0690' => 'tar', 'TAR624G1297' => 'tar', 'TAR626G0865' => 'tar', 'TAR626G1901' => 'tar', 'TAR627G0630' => 'tar', 'TAR627G1086' => 'tar', 'TAR629G0767' => 'tar', 'THA.LOC104811873' => 'tha', 'THA.LOC104816749' => 'tha', 'THA.LOC104818088' => 'tha', 'THA.LOC104819471' => 'tha', 'Thecc.02G246600' => 'tca', 'Thecc.07G095300' => 'tca', 'Thecc.08G001600' => 'tca', 'Thhalv10013822m.g' => 'esa', 'Thhalv10020987m.g' => 'esa', 'Thhalv10023517m.g' => 'esa', 'TPR.G3780' => 'tpr', 'TPR.G39821' => 'tpr', 'TPR.G4430' => 'tpr', 'TWI38G0429' => 'twi', 'TWI38G1311' => 'twi', 'TWI56G0457' => 'twi', 'TWI75G0695' => 'twi', 'unitig_0.g2265' => 'ugi', 'unitig_22.g6470' => 'ugi', 'unitig_22.g6471' => 'ugi', 'unitig_26.g10337' => 'ugi', 'unitig_26.g9337' => 'ugi', 'unitig_8.g3171' => 'ugi', 'unitig_8.g3640' => 'ugi', 'vmacro01192' => 'vma', 'vmacro09525' => 'vma', 'vmacro16268' => 'vma', 'vmacro21488' => 'vma', 'vmacro22611' => 'vma', 'VMungo1080G0436' => 'vmu', 'VMungo1127G0098' => 'vmu', 'VMungo1215G0073' => 'vmu', 'VMungo1309G1863' => 'vmu', 'VMungo1309G2802' => 'vmu', 'Zm00001eb150820' => 'zma', 'Zm00001eb254280' => 'zma', 'Zm00001eb369540' => 'zma', 'Zm00001eb372130' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001464', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001464' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001464', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '433', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001464' ) ), 'genes' => array( 'A01p29040' => 'bna', 'A02p10750' => 'bna', 'A05p34240' => 'bna', 'A09p17700' => 'bna', 'A10p11290' => 'bna', 'Aa31LG2G10180' => 'aar', 'Aa31LG3G10040' => 'aar', 'Aa31LG8G2430' => 'aar', 'Actinidia01084' => 'ach', 'Actinidia08175' => 'ach', 'Actinidia15025' => 'ach', 'Actinidia18775' => 'ach', 'Actinidia22655' => 'ach', 'Actinidia27774' => 'ach', 'Actinidia32591' => 'ach', 'Actinidia35242' => 'ach', 'Ah.02g129740' => 'amhyb', 'Ah.04g164710' => 'amhyb', 'AL2G16630' => 'aly', 'AL3G27630' => 'aly', 'AL8G28980' => 'aly', 'Aqoxy1G02343' => 'aox', 'Aqoxy3G00949' => 'aox', 'Aqoxy3G03050' => 'aox', 'Aqoxy4G00711' => 'aox', 'Aqoxy5G01167_Aqoxy5G01168' => 'aox', 'arahy.Tifrunner.gnm1.ann1.D71PUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS6UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1NYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT2E5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRGB4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RD9LCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7VZNI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFL0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZL1FCV' => 'arhy', 'AT1G60060' => 'ath', 'AT3G15240' => 'ath', 'AT5G53900' => 'ath', 'ATR0580G446' => 'atr', 'ATR1094G020' => 'atr', 'ATR1149G003' => 'atr', 'Atru.chr11.1992' => 'acertr', 'Atru.chr13.746' => 'acertr', 'Atru.chr2.2431' => 'acertr', 'Atru.chr9.2429' => 'acertr', 'AUR62005336' => 'cqu', 'AUR62013988' => 'cqu', 'AUR62019456' => 'cqu', 'AUR62036174' => 'cqu', 'BcaB04g20248' => 'bca', 'BcaB04g20941' => 'bca', 'BcaB05g22084' => 'bca', 'BcaB06g29547' => 'bca', 'BcaB07g31200' => 'bca', 'BcaC03g14375' => 'bca', 'BcaC04g20407' => 'bca', 'BcaC04g22216' => 'bca', 'BcaC09g48480' => 'bca', 'BcaC09g49437' => 'bca', 'BNapus_Darmor_BZH_scaffold_155p00050' => 'bna', 'BolC1t03635H' => 'bol', 'BolC1t04892H' => 'bol', 'BolC2t07918H' => 'bol', 'BolC5t33885H' => 'bol', 'BolC9t55110H' => 'bol', 'BolC9t57273H' => 'bol', 'BolC9t57274H' => 'bol', 'BraA01t02992Z' => 'bra', 'BraA02t06136Z' => 'bra', 'BraA05t22244Z' => 'bra', 'BraA09t37398Z' => 'bra', 'BraA10t43221Z' => 'bra', 'C01p36760' => 'bna', 'C01p49330' => 'bna', 'C02p17870' => 'bna', 'C05p52000' => 'bna', 'C09p22040' => 'bna', 'C09p43910' => 'bna', 'C09p43920' => 'bna', 'CAN.G162.40' => 'can', 'CAN.G1812.6' => 'can', 'CAN.G205.15' => 'can', 'CANSAT01G3002' => 'cansat', 'CANSAT25G0979' => 'cansat', 'CANSAT54G0487' => 'cansat', 'CANSAT56G0549' => 'cansat', 'CANSAT56G3346' => 'cansat', 'CARHR052890' => 'chi', 'CARHR090220' => 'chi', 'CARHR267020' => 'chi', 'Carub.0002s0519' => 'cru', 'Carub.0003s1489' => 'cru', 'Carub.0008s1420' => 'cru', 'Ca_03517_v3' => 'car', 'Ca_03524_v3' => 'car', 'Ca_04613_v3' => 'car', 'Ca_13258_v3' => 'car', 'Cc05_g11820' => 'ccan', 'Cc10_g04830' => 'ccan', 'Cc11_g14410' => 'ccan', 'CDE04G2883' => 'cde', 'CDE05G0758' => 'cde', 'CDE07G0583' => 'cde', 'Cfa009118' => 'cfa', 'Cfa020563' => 'cfa', 'Ciclev10001451m.g' => 'ccl', 'Ciclev10008806m.g' => 'ccl', 'Ciclev10031899m.g' => 'ccl', 'CiPaw.05G148000' => 'cil', 'CiPaw.06G073100' => 'cil', 'CiPaw.11G171600' => 'cil', 'CiPaw.12G119900' => 'cil', 'CiPaw.15G052300' => 'cil', 'CiPaw.16G038100' => 'cil', 'ClCG05G020180' => 'cla', 'ClCG05G025150' => 'cla', 'ClCG11G017910' => 'cla', 'COL.COLO4_10120' => 'col', 'COL.COLO4_19528' => 'col', 'COL.COLO4_36706' => 'col', 'Cpa.g.c43713' => 'cpa', 'Cpa.g.sc21.157' => 'cpa', 'Cpa.g.sc258.11' => 'cpa', 'CsaV3_4G033540' => 'csa', 'CsaV3_4G034660' => 'csa', 'CsaV3_5G031750' => 'csa', 'CSS0003344' => 'camsi', 'CSS0005710' => 'camsi', 'CSS0009867' => 'camsi', 'CSS0014920' => 'camsi', 'CSS0018356' => 'camsi', 'CSS0031711' => 'camsi', 'DCAR_008819' => 'dca', 'DCAR_019566' => 'dca', 'DCAR_024136' => 'dca', 'Dinv14933' => 'din', 'Dinv20192' => 'din', 'Dinv24887' => 'din', 'Dinv31014' => 'din', 'Dinv31088' => 'din', 'Dinv39273' => 'din', 'Duzib041G0015' => 'dzi', 'Duzib093G0671' => 'dzi', 'Duzib170G0308' => 'dzi', 'Duzib213G0312' => 'dzi', 'Duzib248G0333' => 'dzi', 'Duzib251G0903' => 'dzi', 'Duzib268G0972' => 'dzi', 'Duzib268G1447' => 'dzi', 'ECA233G5992' => 'eca', 'ECA234G1389' => 'eca', 'ECA234G2098' => 'eca', 'ECA240G3101' => 'eca', 'ECA247G1320' => 'eca', 'EL10Ac4g08223' => 'bvu', 'EL10Ac6g13639' => 'bvu', 'Eucgr.B03947' => 'egr', 'Eucgr.F02309' => 'egr', 'Eucgr.F03300' => 'egr', 'FAN07G2436' => 'fan', 'FAN11G2636' => 'fan', 'FAN12G1037' => 'fan', 'FAN15G0298' => 'fan', 'FAN16G0887' => 'fan', 'FAN17G2701' => 'fan', 'FAN20G2540' => 'fan', 'FAN21G3771' => 'fan', 'FAN22G0058' => 'fan', 'FAN24G0010' => 'fan', 'FAN25G0658' => 'fan', 'FAN27G0260' => 'fan', 'FvH4_2g33720' => 'fve', 'FvH4_3g19620' => 'fve', 'FvH4_4g34860' => 'fve', 'Glyma.01G032600' => 'gma', 'Glyma.02G032700' => 'gma', 'Glyma.04G041700' => 'gma', 'Glyma.06G042700' => 'gma', 'Glyma.06G238400' => 'gma', 'Glyma.08G289500' => 'gma', 'Glyma.12G163053' => 'gma', 'Glyma.12G226200' => 'gma', 'Glyma.13G274700' => 'gma', 'Glyma.17G238900' => 'gma', 'Gohir.A01G061600' => 'ghi', 'Gohir.A03G141300' => 'ghi', 'Gohir.A04G034100' => 'ghi', 'Gohir.A05G205400' => 'ghi', 'Gohir.D01G048200' => 'ghi', 'Gohir.D02G164200' => 'ghi', 'Gohir.D05G208700' => 'ghi', 'Gohir.D05G349100' => 'ghi', 'Gorai.002G068000' => 'gra', 'Gorai.005G184200' => 'gra', 'Gorai.009G215100' => 'gra', 'Gorai.009G378800' => 'gra', 'Gorai.009G379000' => 'gra', 'GSVIVG01007796001' => 'vvi', 'GSVIVG01009438001' => 'vvi', 'GSVIVG01014299001' => 'vvi', 'GSVIVG01020205001' => 'vvi', 'HanXRQChr08g0208861' => 'han', 'HanXRQChr10g0288171' => 'han', 'HanXRQChr10g0302671' => 'han', 'HanXRQChr12g0361151' => 'han', 'HanXRQChr12g0364051' => 'han', 'HanXRQChr12g0383401' => 'han', 'HanXRQChr17g0570241' => 'han', 'Haze_09449' => 'cav', 'Haze_12154' => 'cav', 'Haze_18071' => 'cav', 'Hma1.2p1_0387F.1_g141970' => 'hma', 'Hma1.2p1_0634F.1_g193015' => 'hma', 'Hma1.2p1_0634F.1_g193030' => 'hma', 'Hma1.2p1_1017F.1_g248320' => 'hma', 'HPP92_012426' => 'vpl', 'HPP92_014194' => 'vpl', 'HPP92_016978' => 'vpl', 'HPP92_018293' => 'vpl', 'HPP92_026450' => 'vpl', 'HPP92_027886' => 'vpl', 'Hund22865' => 'sun', 'Hund25331' => 'sun', 'Lalb_Chr03g0030741' => 'lal', 'Lalb_Chr05g0217071' => 'lal', 'Lalb_Chr16g0382411' => 'lal', 'Lalb_Chr19g0134141' => 'lal', 'Lalb_Chr20g0109551' => 'lal', 'Lalb_Chr23g0267271' => 'lal', 'Lj1A840T51' => 'lonja', 'Lj1g0009830' => 'lja', 'Lj2g0010221' => 'lja', 'Lj3g0000525' => 'lja', 'Lj3g0001154' => 'lja', 'Lj4A63T85' => 'lonja', 'Lj5g0015457' => 'lja', 'Lj6C802T7' => 'lonja', 'Lsat_1_v5_gn_1_22421' => 'lsa', 'Lsat_1_v5_gn_4_7141' => 'lsa', 'Lsat_1_v5_gn_5_128181' => 'lsa', 'Lsat_1_v5_gn_8_157561' => 'lsa', 'Lsat_1_v5_gn_9_98881' => 'lsa', 'Manes.01G198000' => 'mes', 'Manes.05G089000' => 'mes', 'Manes.05G177000' => 'mes', 'Manes.15G089000' => 'mes', 'Mapoly0104s0004' => 'mpo', 'Mapoly0104s0005' => 'mpo', 'Mapoly0123s0025' => 'mpo', 'MBI14_g17747_MAGBIO' => 'mbi', 'MBI18_g42039_MAGBIO' => 'mbi', 'MD03G1230900' => 'mdo', 'MD08G1093800' => 'mdo', 'MD11G1252200' => 'mdo', 'MD13G1088900' => 'mdo', 'MD15G1077500' => 'mdo', 'MD15G1077600' => 'mdo', 'MD16G1089000' => 'mdo', 'Medtr1g018810' => 'mtr', 'Medtr2g078750' => 'mtr', 'Medtr5g034840' => 'mtr', 'MELO3C012014.2' => 'cme', 'MELO3C016782.2' => 'cme', 'MELO3C025601.2' => 'cme', 'Migut.H01952' => 'egut', 'Migut.L01435' => 'egut', 'Migut.N02730' => 'egut', 'MSTRG.12896' => 'ama', 'MSTRG.14355' => 'ama', 'MSTRG.607' => 'ama', 'MSTRG.7879' => 'ama', 'MSTRG.7880' => 'ama', 'Nitab4.5_0000052g0280' => 'nta', 'Nitab4.5_0002198g0030' => 'nta', 'Nitab4.5_0002330g0070' => 'nta', 'Nitab4.5_0004339g0080' => 'nta', 'Nitab4.5_0005232g0020' => 'nta', 'Nitab4.5_0006003g0010' => 'nta', 'Nitab4.5_0007216g0010' => 'nta', 'Nitab4.5_0010118g0030' => 'nta', 'Nn1g04168' => 'nnu', 'Nn1g04739' => 'nnu', 'Nn1g06457' => 'nnu', 'Nn3g16940' => 'nnu', 'Nn4g22853' => 'nnu', 'Nn5g30389' => 'nnu', 'Oeu019304.1' => 'oeu', 'Oeu025363.1' => 'oeu', 'Oeu025438.1' => 'oeu', 'Oeu037368.2' => 'oeu', 'Oeu037614.1' => 'oeu', 'Oeu045702.1' => 'oeu', 'Oeu051080.1' => 'oeu', 'Os02g0742700' => 'osa', 'Os06g0233800' => 'osa', 'Os11g0446000' => 'osa', 'Peaxi162Scf00010g02017' => 'pax', 'Peaxi162Scf00069g01733' => 'pax', 'Peaxi162Scf00421g00027' => 'pax', 'Peaxi162Scf01087g00126' => 'pax', 'PGR031G1567' => 'pgr', 'PGR031G3595' => 'pgr', 'PGR119G1860' => 'pgr', 'PGSC0003DMG400004129' => 'stu', 'PGSC0003DMG400007946' => 'stu', 'PGSC0003DMG400012407' => 'stu', 'Phvul.002G072900' => 'pvu', 'Phvul.005G074200' => 'pvu', 'Phvul.009G067400' => 'pvu', 'Phvul.011G165100' => 'pvu', 'Potri.001G397800' => 'ptr', 'Potri.010G096400' => 'ptr', 'Potri.011G116400' => 'ptr', 'Potri.014G024000' => 'ptr', 'Pp3c12_11470' => 'ppa', 'Pp3c13_20820' => 'ppa', 'Pp3c1_42150' => 'ppa', 'Pp3c25_12410' => 'ppa', 'Pp3c26_3400' => 'ppa', 'Pp3c3_12640' => 'ppa', 'Pp3c3_34790' => 'ppa', 'Pp3c4_23320' => 'ppa', 'Pp3c4_6910' => 'ppa', 'Prupe.1G256900' => 'ppe', 'Prupe.1G430900' => 'ppe', 'Prupe.2G207300' => 'ppe', 'Prupe.4G176900' => 'ppe', 'Psat2g106960' => 'psa', 'Psat5g242000' => 'psa', 'Psat6g014880' => 'psa', 'PSO017G3926' => 'pso', 'PSO063G2642' => 'pso', 'PSO170G4588' => 'pso', 'PSO210G1092' => 'pso', 'PSO478G1608' => 'pso', 'PSO541G3729' => 'pso', 'PSO675G1360' => 'pso', 'PSO832G1990' => 'pso', 'QL02p003995' => 'qlo', 'QL03p061967' => 'qlo', 'QL08p022567' => 'qlo', 'QL10p013557' => 'qlo', 'QL10p013564' => 'qlo', 'RcHm_v2.0_Chr4g0400741' => 'rch', 'RcHm_v2.0_Chr4g0444251' => 'rch', 'RcHm_v2.0_Chr5g0032811' => 'rch', 'RcHm_v2.0_Chr6g0308831' => 'rch', 'Rhsim04G0022400' => 'rsi', 'Rhsim12G0048200' => 'rsi', 'Sabra10G0068900' => 'sbr', 'Sabra11G0102000' => 'sbr', 'SalBow2G1020' => 'sbo', 'SalBow2G1597' => 'sbo', 'SalBow6G2631' => 'sbo', 'SalBow6G3109' => 'sbo', 'SalBow7G3611' => 'sbo', 'SalBow8G1514' => 'sbo', 'Sc04g0008990' => 'sci', 'Sc16g0007140' => 'sci', 'Sed0005883' => 'sed', 'Sed0012647' => 'sed', 'Sed0016196' => 'sed', 'Sed0017133' => 'sed', 'Sed0018762' => 'sed', 'Sed0021786' => 'sed', 'SEGI_01970' => 'sgi', 'SEGI_17554' => 'sgi', 'SEGI_21541' => 'sgi', 'SEGI_22891' => 'sgi', 'SEGI_30140' => 'sgi', 'SEGI_36417' => 'sgi', 'SGA_v2.0_scaffold165G38267' => 'sas', 'SGA_v2.0_scaffold28G11799' => 'sas', 'SGA_v2.0_scaffold70G23685' => 'sas', 'SMO137G0196' => 'smo', 'SMO174G0215' => 'smo', 'Solyc04g078520.3' => 'sly', 'Solyc05g005810.4' => 'sly', 'Solyc07g062950.4' => 'sly', 'Sopen04g032120' => 'spe', 'Sopen05g001820' => 'spe', 'Sopen07g031140' => 'spe', 'Sp2g04540' => 'spa', 'Sp3g13440' => 'spa', 'Sp6g15960' => 'spa', 'TAR371G0388' => 'tar', 'TAR371G1038' => 'tar', 'TAR622G0528' => 'tar', 'TAR622G0690' => 'tar', 'TAR624G1297' => 'tar', 'TAR626G0865' => 'tar', 'TAR626G1901' => 'tar', 'TAR627G0630' => 'tar', 'TAR627G1086' => 'tar', 'TAR629G0767' => 'tar', 'THA.LOC104811873' => 'tha', 'THA.LOC104816749' => 'tha', 'THA.LOC104818088' => 'tha', 'THA.LOC104819471' => 'tha', 'Thecc.02G246600' => 'tca', 'Thecc.07G095300' => 'tca', 'Thecc.08G001600' => 'tca', 'Thhalv10013822m.g' => 'esa', 'Thhalv10020987m.g' => 'esa', 'Thhalv10023517m.g' => 'esa', 'TPR.G3780' => 'tpr', 'TPR.G39821' => 'tpr', 'TPR.G4430' => 'tpr', 'TWI38G0429' => 'twi', 'TWI38G1311' => 'twi', 'TWI56G0457' => 'twi', 'TWI75G0695' => 'twi', 'unitig_0.g2265' => 'ugi', 'unitig_22.g6470' => 'ugi', 'unitig_22.g6471' => 'ugi', 'unitig_26.g10337' => 'ugi', 'unitig_26.g9337' => 'ugi', 'unitig_8.g3171' => 'ugi', 'unitig_8.g3640' => 'ugi', 'vmacro01192' => 'vma', 'vmacro09525' => 'vma', 'vmacro16268' => 'vma', 'vmacro21488' => 'vma', 'vmacro22611' => 'vma', 'VMungo1080G0436' => 'vmu', 'VMungo1127G0098' => 'vmu', 'VMungo1215G0073' => 'vmu', 'VMungo1309G1863' => 'vmu', 'VMungo1309G2802' => 'vmu', 'Zm00001eb150820' => 'zma', 'Zm00001eb254280' => 'zma', 'Zm00001eb369540' => 'zma', 'Zm00001eb372130' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001464' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001464' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001464' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001464' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001464', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '433', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p29040' => 'bna', 'A02p10750' => 'bna', 'A05p34240' => 'bna', 'A09p17700' => 'bna', 'A10p11290' => 'bna', 'Aa31LG2G10180' => 'aar', 'Aa31LG3G10040' => 'aar', 'Aa31LG8G2430' => 'aar', 'Actinidia01084' => 'ach', 'Actinidia08175' => 'ach', 'Actinidia15025' => 'ach', 'Actinidia18775' => 'ach', 'Actinidia22655' => 'ach', 'Actinidia27774' => 'ach', 'Actinidia32591' => 'ach', 'Actinidia35242' => 'ach', 'Ah.02g129740' => 'amhyb', 'Ah.04g164710' => 'amhyb', 'AL2G16630' => 'aly', 'AL3G27630' => 'aly', 'AL8G28980' => 'aly', 'Aqoxy1G02343' => 'aox', 'Aqoxy3G00949' => 'aox', 'Aqoxy3G03050' => 'aox', 'Aqoxy4G00711' => 'aox', 'Aqoxy5G01167_Aqoxy5G01168' => 'aox', 'arahy.Tifrunner.gnm1.ann1.D71PUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS6UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1NYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT2E5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRGB4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RD9LCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7VZNI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFL0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZL1FCV' => 'arhy', 'AT1G60060' => 'ath', 'AT3G15240' => 'ath', 'AT5G53900' => 'ath', 'ATR0580G446' => 'atr', 'ATR1094G020' => 'atr', 'ATR1149G003' => 'atr', 'Atru.chr11.1992' => 'acertr', 'Atru.chr13.746' => 'acertr', 'Atru.chr2.2431' => 'acertr', 'Atru.chr9.2429' => 'acertr', 'AUR62005336' => 'cqu', 'AUR62013988' => 'cqu', 'AUR62019456' => 'cqu', 'AUR62036174' => 'cqu', 'BcaB04g20248' => 'bca', 'BcaB04g20941' => 'bca', 'BcaB05g22084' => 'bca', 'BcaB06g29547' => 'bca', 'BcaB07g31200' => 'bca', 'BcaC03g14375' => 'bca', 'BcaC04g20407' => 'bca', 'BcaC04g22216' => 'bca', 'BcaC09g48480' => 'bca', 'BcaC09g49437' => 'bca', 'BNapus_Darmor_BZH_scaffold_155p00050' => 'bna', 'BolC1t03635H' => 'bol', 'BolC1t04892H' => 'bol', 'BolC2t07918H' => 'bol', 'BolC5t33885H' => 'bol', 'BolC9t55110H' => 'bol', 'BolC9t57273H' => 'bol', 'BolC9t57274H' => 'bol', 'BraA01t02992Z' => 'bra', 'BraA02t06136Z' => 'bra', 'BraA05t22244Z' => 'bra', 'BraA09t37398Z' => 'bra', 'BraA10t43221Z' => 'bra', 'C01p36760' => 'bna', 'C01p49330' => 'bna', 'C02p17870' => 'bna', 'C05p52000' => 'bna', 'C09p22040' => 'bna', 'C09p43910' => 'bna', 'C09p43920' => 'bna', 'CAN.G162.40' => 'can', 'CAN.G1812.6' => 'can', 'CAN.G205.15' => 'can', 'CANSAT01G3002' => 'cansat', 'CANSAT25G0979' => 'cansat', 'CANSAT54G0487' => 'cansat', 'CANSAT56G0549' => 'cansat', 'CANSAT56G3346' => 'cansat', 'CARHR052890' => 'chi', 'CARHR090220' => 'chi', 'CARHR267020' => 'chi', 'Carub.0002s0519' => 'cru', 'Carub.0003s1489' => 'cru', 'Carub.0008s1420' => 'cru', 'Ca_03517_v3' => 'car', 'Ca_03524_v3' => 'car', 'Ca_04613_v3' => 'car', 'Ca_13258_v3' => 'car', 'Cc05_g11820' => 'ccan', 'Cc10_g04830' => 'ccan', 'Cc11_g14410' => 'ccan', 'CDE04G2883' => 'cde', 'CDE05G0758' => 'cde', 'CDE07G0583' => 'cde', 'Cfa009118' => 'cfa', 'Cfa020563' => 'cfa', 'Ciclev10001451m.g' => 'ccl', 'Ciclev10008806m.g' => 'ccl', 'Ciclev10031899m.g' => 'ccl', 'CiPaw.05G148000' => 'cil', 'CiPaw.06G073100' => 'cil', 'CiPaw.11G171600' => 'cil', 'CiPaw.12G119900' => 'cil', 'CiPaw.15G052300' => 'cil', 'CiPaw.16G038100' => 'cil', 'ClCG05G020180' => 'cla', 'ClCG05G025150' => 'cla', 'ClCG11G017910' => 'cla', 'COL.COLO4_10120' => 'col', 'COL.COLO4_19528' => 'col', 'COL.COLO4_36706' => 'col', 'Cpa.g.c43713' => 'cpa', 'Cpa.g.sc21.157' => 'cpa', 'Cpa.g.sc258.11' => 'cpa', 'CsaV3_4G033540' => 'csa', 'CsaV3_4G034660' => 'csa', 'CsaV3_5G031750' => 'csa', 'CSS0003344' => 'camsi', 'CSS0005710' => 'camsi', 'CSS0009867' => 'camsi', 'CSS0014920' => 'camsi', 'CSS0018356' => 'camsi', 'CSS0031711' => 'camsi', 'DCAR_008819' => 'dca', 'DCAR_019566' => 'dca', 'DCAR_024136' => 'dca', 'Dinv14933' => 'din', 'Dinv20192' => 'din', 'Dinv24887' => 'din', 'Dinv31014' => 'din', 'Dinv31088' => 'din', 'Dinv39273' => 'din', 'Duzib041G0015' => 'dzi', 'Duzib093G0671' => 'dzi', 'Duzib170G0308' => 'dzi', 'Duzib213G0312' => 'dzi', 'Duzib248G0333' => 'dzi', 'Duzib251G0903' => 'dzi', 'Duzib268G0972' => 'dzi', 'Duzib268G1447' => 'dzi', 'ECA233G5992' => 'eca', 'ECA234G1389' => 'eca', 'ECA234G2098' => 'eca', 'ECA240G3101' => 'eca', 'ECA247G1320' => 'eca', 'EL10Ac4g08223' => 'bvu', 'EL10Ac6g13639' => 'bvu', 'Eucgr.B03947' => 'egr', 'Eucgr.F02309' => 'egr', 'Eucgr.F03300' => 'egr', 'FAN07G2436' => 'fan', 'FAN11G2636' => 'fan', 'FAN12G1037' => 'fan', 'FAN15G0298' => 'fan', 'FAN16G0887' => 'fan', 'FAN17G2701' => 'fan', 'FAN20G2540' => 'fan', 'FAN21G3771' => 'fan', 'FAN22G0058' => 'fan', 'FAN24G0010' => 'fan', 'FAN25G0658' => 'fan', 'FAN27G0260' => 'fan', 'FvH4_2g33720' => 'fve', 'FvH4_3g19620' => 'fve', 'FvH4_4g34860' => 'fve', 'Glyma.01G032600' => 'gma', 'Glyma.02G032700' => 'gma', 'Glyma.04G041700' => 'gma', 'Glyma.06G042700' => 'gma', 'Glyma.06G238400' => 'gma', 'Glyma.08G289500' => 'gma', 'Glyma.12G163053' => 'gma', 'Glyma.12G226200' => 'gma', 'Glyma.13G274700' => 'gma', 'Glyma.17G238900' => 'gma', 'Gohir.A01G061600' => 'ghi', 'Gohir.A03G141300' => 'ghi', 'Gohir.A04G034100' => 'ghi', 'Gohir.A05G205400' => 'ghi', 'Gohir.D01G048200' => 'ghi', 'Gohir.D02G164200' => 'ghi', 'Gohir.D05G208700' => 'ghi', 'Gohir.D05G349100' => 'ghi', 'Gorai.002G068000' => 'gra', 'Gorai.005G184200' => 'gra', 'Gorai.009G215100' => 'gra', 'Gorai.009G378800' => 'gra', 'Gorai.009G379000' => 'gra', 'GSVIVG01007796001' => 'vvi', 'GSVIVG01009438001' => 'vvi', 'GSVIVG01014299001' => 'vvi', 'GSVIVG01020205001' => 'vvi', 'HanXRQChr08g0208861' => 'han', 'HanXRQChr10g0288171' => 'han', 'HanXRQChr10g0302671' => 'han', 'HanXRQChr12g0361151' => 'han', 'HanXRQChr12g0364051' => 'han', 'HanXRQChr12g0383401' => 'han', 'HanXRQChr17g0570241' => 'han', 'Haze_09449' => 'cav', 'Haze_12154' => 'cav', 'Haze_18071' => 'cav', 'Hma1.2p1_0387F.1_g141970' => 'hma', 'Hma1.2p1_0634F.1_g193015' => 'hma', 'Hma1.2p1_0634F.1_g193030' => 'hma', 'Hma1.2p1_1017F.1_g248320' => 'hma', 'HPP92_012426' => 'vpl', 'HPP92_014194' => 'vpl', 'HPP92_016978' => 'vpl', 'HPP92_018293' => 'vpl', 'HPP92_026450' => 'vpl', 'HPP92_027886' => 'vpl', 'Hund22865' => 'sun', 'Hund25331' => 'sun', 'Lalb_Chr03g0030741' => 'lal', 'Lalb_Chr05g0217071' => 'lal', 'Lalb_Chr16g0382411' => 'lal', 'Lalb_Chr19g0134141' => 'lal', 'Lalb_Chr20g0109551' => 'lal', 'Lalb_Chr23g0267271' => 'lal', 'Lj1A840T51' => 'lonja', 'Lj1g0009830' => 'lja', 'Lj2g0010221' => 'lja', 'Lj3g0000525' => 'lja', 'Lj3g0001154' => 'lja', 'Lj4A63T85' => 'lonja', 'Lj5g0015457' => 'lja', 'Lj6C802T7' => 'lonja', 'Lsat_1_v5_gn_1_22421' => 'lsa', 'Lsat_1_v5_gn_4_7141' => 'lsa', 'Lsat_1_v5_gn_5_128181' => 'lsa', 'Lsat_1_v5_gn_8_157561' => 'lsa', 'Lsat_1_v5_gn_9_98881' => 'lsa', 'Manes.01G198000' => 'mes', 'Manes.05G089000' => 'mes', 'Manes.05G177000' => 'mes', 'Manes.15G089000' => 'mes', 'Mapoly0104s0004' => 'mpo', 'Mapoly0104s0005' => 'mpo', 'Mapoly0123s0025' => 'mpo', 'MBI14_g17747_MAGBIO' => 'mbi', 'MBI18_g42039_MAGBIO' => 'mbi', 'MD03G1230900' => 'mdo', 'MD08G1093800' => 'mdo', 'MD11G1252200' => 'mdo', 'MD13G1088900' => 'mdo', 'MD15G1077500' => 'mdo', 'MD15G1077600' => 'mdo', 'MD16G1089000' => 'mdo', 'Medtr1g018810' => 'mtr', 'Medtr2g078750' => 'mtr', 'Medtr5g034840' => 'mtr', 'MELO3C012014.2' => 'cme', 'MELO3C016782.2' => 'cme', 'MELO3C025601.2' => 'cme', 'Migut.H01952' => 'egut', 'Migut.L01435' => 'egut', 'Migut.N02730' => 'egut', 'MSTRG.12896' => 'ama', 'MSTRG.14355' => 'ama', 'MSTRG.607' => 'ama', 'MSTRG.7879' => 'ama', 'MSTRG.7880' => 'ama', 'Nitab4.5_0000052g0280' => 'nta', 'Nitab4.5_0002198g0030' => 'nta', 'Nitab4.5_0002330g0070' => 'nta', 'Nitab4.5_0004339g0080' => 'nta', 'Nitab4.5_0005232g0020' => 'nta', 'Nitab4.5_0006003g0010' => 'nta', 'Nitab4.5_0007216g0010' => 'nta', 'Nitab4.5_0010118g0030' => 'nta', 'Nn1g04168' => 'nnu', 'Nn1g04739' => 'nnu', 'Nn1g06457' => 'nnu', 'Nn3g16940' => 'nnu', 'Nn4g22853' => 'nnu', 'Nn5g30389' => 'nnu', 'Oeu019304.1' => 'oeu', 'Oeu025363.1' => 'oeu', 'Oeu025438.1' => 'oeu', 'Oeu037368.2' => 'oeu', 'Oeu037614.1' => 'oeu', 'Oeu045702.1' => 'oeu', 'Oeu051080.1' => 'oeu', 'Os02g0742700' => 'osa', 'Os06g0233800' => 'osa', 'Os11g0446000' => 'osa', 'Peaxi162Scf00010g02017' => 'pax', 'Peaxi162Scf00069g01733' => 'pax', 'Peaxi162Scf00421g00027' => 'pax', 'Peaxi162Scf01087g00126' => 'pax', 'PGR031G1567' => 'pgr', 'PGR031G3595' => 'pgr', 'PGR119G1860' => 'pgr', 'PGSC0003DMG400004129' => 'stu', 'PGSC0003DMG400007946' => 'stu', 'PGSC0003DMG400012407' => 'stu', 'Phvul.002G072900' => 'pvu', 'Phvul.005G074200' => 'pvu', 'Phvul.009G067400' => 'pvu', 'Phvul.011G165100' => 'pvu', 'Potri.001G397800' => 'ptr', 'Potri.010G096400' => 'ptr', 'Potri.011G116400' => 'ptr', 'Potri.014G024000' => 'ptr', 'Pp3c12_11470' => 'ppa', 'Pp3c13_20820' => 'ppa', 'Pp3c1_42150' => 'ppa', 'Pp3c25_12410' => 'ppa', 'Pp3c26_3400' => 'ppa', 'Pp3c3_12640' => 'ppa', 'Pp3c3_34790' => 'ppa', 'Pp3c4_23320' => 'ppa', 'Pp3c4_6910' => 'ppa', 'Prupe.1G256900' => 'ppe', 'Prupe.1G430900' => 'ppe', 'Prupe.2G207300' => 'ppe', 'Prupe.4G176900' => 'ppe', 'Psat2g106960' => 'psa', 'Psat5g242000' => 'psa', 'Psat6g014880' => 'psa', 'PSO017G3926' => 'pso', 'PSO063G2642' => 'pso', 'PSO170G4588' => 'pso', 'PSO210G1092' => 'pso', 'PSO478G1608' => 'pso', 'PSO541G3729' => 'pso', 'PSO675G1360' => 'pso', 'PSO832G1990' => 'pso', 'QL02p003995' => 'qlo', 'QL03p061967' => 'qlo', 'QL08p022567' => 'qlo', 'QL10p013557' => 'qlo', 'QL10p013564' => 'qlo', 'RcHm_v2.0_Chr4g0400741' => 'rch', 'RcHm_v2.0_Chr4g0444251' => 'rch', 'RcHm_v2.0_Chr5g0032811' => 'rch', 'RcHm_v2.0_Chr6g0308831' => 'rch', 'Rhsim04G0022400' => 'rsi', 'Rhsim12G0048200' => 'rsi', 'Sabra10G0068900' => 'sbr', 'Sabra11G0102000' => 'sbr', 'SalBow2G1020' => 'sbo', 'SalBow2G1597' => 'sbo', 'SalBow6G2631' => 'sbo', 'SalBow6G3109' => 'sbo', 'SalBow7G3611' => 'sbo', 'SalBow8G1514' => 'sbo', 'Sc04g0008990' => 'sci', 'Sc16g0007140' => 'sci', 'Sed0005883' => 'sed', 'Sed0012647' => 'sed', 'Sed0016196' => 'sed', 'Sed0017133' => 'sed', 'Sed0018762' => 'sed', 'Sed0021786' => 'sed', 'SEGI_01970' => 'sgi', 'SEGI_17554' => 'sgi', 'SEGI_21541' => 'sgi', 'SEGI_22891' => 'sgi', 'SEGI_30140' => 'sgi', 'SEGI_36417' => 'sgi', 'SGA_v2.0_scaffold165G38267' => 'sas', 'SGA_v2.0_scaffold28G11799' => 'sas', 'SGA_v2.0_scaffold70G23685' => 'sas', 'SMO137G0196' => 'smo', 'SMO174G0215' => 'smo', 'Solyc04g078520.3' => 'sly', 'Solyc05g005810.4' => 'sly', 'Solyc07g062950.4' => 'sly', 'Sopen04g032120' => 'spe', 'Sopen05g001820' => 'spe', 'Sopen07g031140' => 'spe', 'Sp2g04540' => 'spa', 'Sp3g13440' => 'spa', 'Sp6g15960' => 'spa', 'TAR371G0388' => 'tar', 'TAR371G1038' => 'tar', 'TAR622G0528' => 'tar', 'TAR622G0690' => 'tar', 'TAR624G1297' => 'tar', 'TAR626G0865' => 'tar', 'TAR626G1901' => 'tar', 'TAR627G0630' => 'tar', 'TAR627G1086' => 'tar', 'TAR629G0767' => 'tar', 'THA.LOC104811873' => 'tha', 'THA.LOC104816749' => 'tha', 'THA.LOC104818088' => 'tha', 'THA.LOC104819471' => 'tha', 'Thecc.02G246600' => 'tca', 'Thecc.07G095300' => 'tca', 'Thecc.08G001600' => 'tca', 'Thhalv10013822m.g' => 'esa', 'Thhalv10020987m.g' => 'esa', 'Thhalv10023517m.g' => 'esa', 'TPR.G3780' => 'tpr', 'TPR.G39821' => 'tpr', 'TPR.G4430' => 'tpr', 'TWI38G0429' => 'twi', 'TWI38G1311' => 'twi', 'TWI56G0457' => 'twi', 'TWI75G0695' => 'twi', 'unitig_0.g2265' => 'ugi', 'unitig_22.g6470' => 'ugi', 'unitig_22.g6471' => 'ugi', 'unitig_26.g10337' => 'ugi', 'unitig_26.g9337' => 'ugi', 'unitig_8.g3171' => 'ugi', 'unitig_8.g3640' => 'ugi', 'vmacro01192' => 'vma', 'vmacro09525' => 'vma', 'vmacro16268' => 'vma', 'vmacro21488' => 'vma', 'vmacro22611' => 'vma', 'VMungo1080G0436' => 'vmu', 'VMungo1127G0098' => 'vmu', 'VMungo1215G0073' => 'vmu', 'VMungo1309G1863' => 'vmu', 'VMungo1309G2802' => 'vmu', 'Zm00001eb150820' => 'zma', 'Zm00001eb254280' => 'zma', 'Zm00001eb369540' => 'zma', 'Zm00001eb372130' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001464', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001464' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001464', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '433', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001464' ) ), 'genes' => array( 'A01p29040' => 'bna', 'A02p10750' => 'bna', 'A05p34240' => 'bna', 'A09p17700' => 'bna', 'A10p11290' => 'bna', 'Aa31LG2G10180' => 'aar', 'Aa31LG3G10040' => 'aar', 'Aa31LG8G2430' => 'aar', 'Actinidia01084' => 'ach', 'Actinidia08175' => 'ach', 'Actinidia15025' => 'ach', 'Actinidia18775' => 'ach', 'Actinidia22655' => 'ach', 'Actinidia27774' => 'ach', 'Actinidia32591' => 'ach', 'Actinidia35242' => 'ach', 'Ah.02g129740' => 'amhyb', 'Ah.04g164710' => 'amhyb', 'AL2G16630' => 'aly', 'AL3G27630' => 'aly', 'AL8G28980' => 'aly', 'Aqoxy1G02343' => 'aox', 'Aqoxy3G00949' => 'aox', 'Aqoxy3G03050' => 'aox', 'Aqoxy4G00711' => 'aox', 'Aqoxy5G01167_Aqoxy5G01168' => 'aox', 'arahy.Tifrunner.gnm1.ann1.D71PUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS6UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1NYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT2E5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRGB4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RD9LCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7VZNI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFL0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZL1FCV' => 'arhy', 'AT1G60060' => 'ath', 'AT3G15240' => 'ath', 'AT5G53900' => 'ath', 'ATR0580G446' => 'atr', 'ATR1094G020' => 'atr', 'ATR1149G003' => 'atr', 'Atru.chr11.1992' => 'acertr', 'Atru.chr13.746' => 'acertr', 'Atru.chr2.2431' => 'acertr', 'Atru.chr9.2429' => 'acertr', 'AUR62005336' => 'cqu', 'AUR62013988' => 'cqu', 'AUR62019456' => 'cqu', 'AUR62036174' => 'cqu', 'BcaB04g20248' => 'bca', 'BcaB04g20941' => 'bca', 'BcaB05g22084' => 'bca', 'BcaB06g29547' => 'bca', 'BcaB07g31200' => 'bca', 'BcaC03g14375' => 'bca', 'BcaC04g20407' => 'bca', 'BcaC04g22216' => 'bca', 'BcaC09g48480' => 'bca', 'BcaC09g49437' => 'bca', 'BNapus_Darmor_BZH_scaffold_155p00050' => 'bna', 'BolC1t03635H' => 'bol', 'BolC1t04892H' => 'bol', 'BolC2t07918H' => 'bol', 'BolC5t33885H' => 'bol', 'BolC9t55110H' => 'bol', 'BolC9t57273H' => 'bol', 'BolC9t57274H' => 'bol', 'BraA01t02992Z' => 'bra', 'BraA02t06136Z' => 'bra', 'BraA05t22244Z' => 'bra', 'BraA09t37398Z' => 'bra', 'BraA10t43221Z' => 'bra', 'C01p36760' => 'bna', 'C01p49330' => 'bna', 'C02p17870' => 'bna', 'C05p52000' => 'bna', 'C09p22040' => 'bna', 'C09p43910' => 'bna', 'C09p43920' => 'bna', 'CAN.G162.40' => 'can', 'CAN.G1812.6' => 'can', 'CAN.G205.15' => 'can', 'CANSAT01G3002' => 'cansat', 'CANSAT25G0979' => 'cansat', 'CANSAT54G0487' => 'cansat', 'CANSAT56G0549' => 'cansat', 'CANSAT56G3346' => 'cansat', 'CARHR052890' => 'chi', 'CARHR090220' => 'chi', 'CARHR267020' => 'chi', 'Carub.0002s0519' => 'cru', 'Carub.0003s1489' => 'cru', 'Carub.0008s1420' => 'cru', 'Ca_03517_v3' => 'car', 'Ca_03524_v3' => 'car', 'Ca_04613_v3' => 'car', 'Ca_13258_v3' => 'car', 'Cc05_g11820' => 'ccan', 'Cc10_g04830' => 'ccan', 'Cc11_g14410' => 'ccan', 'CDE04G2883' => 'cde', 'CDE05G0758' => 'cde', 'CDE07G0583' => 'cde', 'Cfa009118' => 'cfa', 'Cfa020563' => 'cfa', 'Ciclev10001451m.g' => 'ccl', 'Ciclev10008806m.g' => 'ccl', 'Ciclev10031899m.g' => 'ccl', 'CiPaw.05G148000' => 'cil', 'CiPaw.06G073100' => 'cil', 'CiPaw.11G171600' => 'cil', 'CiPaw.12G119900' => 'cil', 'CiPaw.15G052300' => 'cil', 'CiPaw.16G038100' => 'cil', 'ClCG05G020180' => 'cla', 'ClCG05G025150' => 'cla', 'ClCG11G017910' => 'cla', 'COL.COLO4_10120' => 'col', 'COL.COLO4_19528' => 'col', 'COL.COLO4_36706' => 'col', 'Cpa.g.c43713' => 'cpa', 'Cpa.g.sc21.157' => 'cpa', 'Cpa.g.sc258.11' => 'cpa', 'CsaV3_4G033540' => 'csa', 'CsaV3_4G034660' => 'csa', 'CsaV3_5G031750' => 'csa', 'CSS0003344' => 'camsi', 'CSS0005710' => 'camsi', 'CSS0009867' => 'camsi', 'CSS0014920' => 'camsi', 'CSS0018356' => 'camsi', 'CSS0031711' => 'camsi', 'DCAR_008819' => 'dca', 'DCAR_019566' => 'dca', 'DCAR_024136' => 'dca', 'Dinv14933' => 'din', 'Dinv20192' => 'din', 'Dinv24887' => 'din', 'Dinv31014' => 'din', 'Dinv31088' => 'din', 'Dinv39273' => 'din', 'Duzib041G0015' => 'dzi', 'Duzib093G0671' => 'dzi', 'Duzib170G0308' => 'dzi', 'Duzib213G0312' => 'dzi', 'Duzib248G0333' => 'dzi', 'Duzib251G0903' => 'dzi', 'Duzib268G0972' => 'dzi', 'Duzib268G1447' => 'dzi', 'ECA233G5992' => 'eca', 'ECA234G1389' => 'eca', 'ECA234G2098' => 'eca', 'ECA240G3101' => 'eca', 'ECA247G1320' => 'eca', 'EL10Ac4g08223' => 'bvu', 'EL10Ac6g13639' => 'bvu', 'Eucgr.B03947' => 'egr', 'Eucgr.F02309' => 'egr', 'Eucgr.F03300' => 'egr', 'FAN07G2436' => 'fan', 'FAN11G2636' => 'fan', 'FAN12G1037' => 'fan', 'FAN15G0298' => 'fan', 'FAN16G0887' => 'fan', 'FAN17G2701' => 'fan', 'FAN20G2540' => 'fan', 'FAN21G3771' => 'fan', 'FAN22G0058' => 'fan', 'FAN24G0010' => 'fan', 'FAN25G0658' => 'fan', 'FAN27G0260' => 'fan', 'FvH4_2g33720' => 'fve', 'FvH4_3g19620' => 'fve', 'FvH4_4g34860' => 'fve', 'Glyma.01G032600' => 'gma', 'Glyma.02G032700' => 'gma', 'Glyma.04G041700' => 'gma', 'Glyma.06G042700' => 'gma', 'Glyma.06G238400' => 'gma', 'Glyma.08G289500' => 'gma', 'Glyma.12G163053' => 'gma', 'Glyma.12G226200' => 'gma', 'Glyma.13G274700' => 'gma', 'Glyma.17G238900' => 'gma', 'Gohir.A01G061600' => 'ghi', 'Gohir.A03G141300' => 'ghi', 'Gohir.A04G034100' => 'ghi', 'Gohir.A05G205400' => 'ghi', 'Gohir.D01G048200' => 'ghi', 'Gohir.D02G164200' => 'ghi', 'Gohir.D05G208700' => 'ghi', 'Gohir.D05G349100' => 'ghi', 'Gorai.002G068000' => 'gra', 'Gorai.005G184200' => 'gra', 'Gorai.009G215100' => 'gra', 'Gorai.009G378800' => 'gra', 'Gorai.009G379000' => 'gra', 'GSVIVG01007796001' => 'vvi', 'GSVIVG01009438001' => 'vvi', 'GSVIVG01014299001' => 'vvi', 'GSVIVG01020205001' => 'vvi', 'HanXRQChr08g0208861' => 'han', 'HanXRQChr10g0288171' => 'han', 'HanXRQChr10g0302671' => 'han', 'HanXRQChr12g0361151' => 'han', 'HanXRQChr12g0364051' => 'han', 'HanXRQChr12g0383401' => 'han', 'HanXRQChr17g0570241' => 'han', 'Haze_09449' => 'cav', 'Haze_12154' => 'cav', 'Haze_18071' => 'cav', 'Hma1.2p1_0387F.1_g141970' => 'hma', 'Hma1.2p1_0634F.1_g193015' => 'hma', 'Hma1.2p1_0634F.1_g193030' => 'hma', 'Hma1.2p1_1017F.1_g248320' => 'hma', 'HPP92_012426' => 'vpl', 'HPP92_014194' => 'vpl', 'HPP92_016978' => 'vpl', 'HPP92_018293' => 'vpl', 'HPP92_026450' => 'vpl', 'HPP92_027886' => 'vpl', 'Hund22865' => 'sun', 'Hund25331' => 'sun', 'Lalb_Chr03g0030741' => 'lal', 'Lalb_Chr05g0217071' => 'lal', 'Lalb_Chr16g0382411' => 'lal', 'Lalb_Chr19g0134141' => 'lal', 'Lalb_Chr20g0109551' => 'lal', 'Lalb_Chr23g0267271' => 'lal', 'Lj1A840T51' => 'lonja', 'Lj1g0009830' => 'lja', 'Lj2g0010221' => 'lja', 'Lj3g0000525' => 'lja', 'Lj3g0001154' => 'lja', 'Lj4A63T85' => 'lonja', 'Lj5g0015457' => 'lja', 'Lj6C802T7' => 'lonja', 'Lsat_1_v5_gn_1_22421' => 'lsa', 'Lsat_1_v5_gn_4_7141' => 'lsa', 'Lsat_1_v5_gn_5_128181' => 'lsa', 'Lsat_1_v5_gn_8_157561' => 'lsa', 'Lsat_1_v5_gn_9_98881' => 'lsa', 'Manes.01G198000' => 'mes', 'Manes.05G089000' => 'mes', 'Manes.05G177000' => 'mes', 'Manes.15G089000' => 'mes', 'Mapoly0104s0004' => 'mpo', 'Mapoly0104s0005' => 'mpo', 'Mapoly0123s0025' => 'mpo', 'MBI14_g17747_MAGBIO' => 'mbi', 'MBI18_g42039_MAGBIO' => 'mbi', 'MD03G1230900' => 'mdo', 'MD08G1093800' => 'mdo', 'MD11G1252200' => 'mdo', 'MD13G1088900' => 'mdo', 'MD15G1077500' => 'mdo', 'MD15G1077600' => 'mdo', 'MD16G1089000' => 'mdo', 'Medtr1g018810' => 'mtr', 'Medtr2g078750' => 'mtr', 'Medtr5g034840' => 'mtr', 'MELO3C012014.2' => 'cme', 'MELO3C016782.2' => 'cme', 'MELO3C025601.2' => 'cme', 'Migut.H01952' => 'egut', 'Migut.L01435' => 'egut', 'Migut.N02730' => 'egut', 'MSTRG.12896' => 'ama', 'MSTRG.14355' => 'ama', 'MSTRG.607' => 'ama', 'MSTRG.7879' => 'ama', 'MSTRG.7880' => 'ama', 'Nitab4.5_0000052g0280' => 'nta', 'Nitab4.5_0002198g0030' => 'nta', 'Nitab4.5_0002330g0070' => 'nta', 'Nitab4.5_0004339g0080' => 'nta', 'Nitab4.5_0005232g0020' => 'nta', 'Nitab4.5_0006003g0010' => 'nta', 'Nitab4.5_0007216g0010' => 'nta', 'Nitab4.5_0010118g0030' => 'nta', 'Nn1g04168' => 'nnu', 'Nn1g04739' => 'nnu', 'Nn1g06457' => 'nnu', 'Nn3g16940' => 'nnu', 'Nn4g22853' => 'nnu', 'Nn5g30389' => 'nnu', 'Oeu019304.1' => 'oeu', 'Oeu025363.1' => 'oeu', 'Oeu025438.1' => 'oeu', 'Oeu037368.2' => 'oeu', 'Oeu037614.1' => 'oeu', 'Oeu045702.1' => 'oeu', 'Oeu051080.1' => 'oeu', 'Os02g0742700' => 'osa', 'Os06g0233800' => 'osa', 'Os11g0446000' => 'osa', 'Peaxi162Scf00010g02017' => 'pax', 'Peaxi162Scf00069g01733' => 'pax', 'Peaxi162Scf00421g00027' => 'pax', 'Peaxi162Scf01087g00126' => 'pax', 'PGR031G1567' => 'pgr', 'PGR031G3595' => 'pgr', 'PGR119G1860' => 'pgr', 'PGSC0003DMG400004129' => 'stu', 'PGSC0003DMG400007946' => 'stu', 'PGSC0003DMG400012407' => 'stu', 'Phvul.002G072900' => 'pvu', 'Phvul.005G074200' => 'pvu', 'Phvul.009G067400' => 'pvu', 'Phvul.011G165100' => 'pvu', 'Potri.001G397800' => 'ptr', 'Potri.010G096400' => 'ptr', 'Potri.011G116400' => 'ptr', 'Potri.014G024000' => 'ptr', 'Pp3c12_11470' => 'ppa', 'Pp3c13_20820' => 'ppa', 'Pp3c1_42150' => 'ppa', 'Pp3c25_12410' => 'ppa', 'Pp3c26_3400' => 'ppa', 'Pp3c3_12640' => 'ppa', 'Pp3c3_34790' => 'ppa', 'Pp3c4_23320' => 'ppa', 'Pp3c4_6910' => 'ppa', 'Prupe.1G256900' => 'ppe', 'Prupe.1G430900' => 'ppe', 'Prupe.2G207300' => 'ppe', 'Prupe.4G176900' => 'ppe', 'Psat2g106960' => 'psa', 'Psat5g242000' => 'psa', 'Psat6g014880' => 'psa', 'PSO017G3926' => 'pso', 'PSO063G2642' => 'pso', 'PSO170G4588' => 'pso', 'PSO210G1092' => 'pso', 'PSO478G1608' => 'pso', 'PSO541G3729' => 'pso', 'PSO675G1360' => 'pso', 'PSO832G1990' => 'pso', 'QL02p003995' => 'qlo', 'QL03p061967' => 'qlo', 'QL08p022567' => 'qlo', 'QL10p013557' => 'qlo', 'QL10p013564' => 'qlo', 'RcHm_v2.0_Chr4g0400741' => 'rch', 'RcHm_v2.0_Chr4g0444251' => 'rch', 'RcHm_v2.0_Chr5g0032811' => 'rch', 'RcHm_v2.0_Chr6g0308831' => 'rch', 'Rhsim04G0022400' => 'rsi', 'Rhsim12G0048200' => 'rsi', 'Sabra10G0068900' => 'sbr', 'Sabra11G0102000' => 'sbr', 'SalBow2G1020' => 'sbo', 'SalBow2G1597' => 'sbo', 'SalBow6G2631' => 'sbo', 'SalBow6G3109' => 'sbo', 'SalBow7G3611' => 'sbo', 'SalBow8G1514' => 'sbo', 'Sc04g0008990' => 'sci', 'Sc16g0007140' => 'sci', 'Sed0005883' => 'sed', 'Sed0012647' => 'sed', 'Sed0016196' => 'sed', 'Sed0017133' => 'sed', 'Sed0018762' => 'sed', 'Sed0021786' => 'sed', 'SEGI_01970' => 'sgi', 'SEGI_17554' => 'sgi', 'SEGI_21541' => 'sgi', 'SEGI_22891' => 'sgi', 'SEGI_30140' => 'sgi', 'SEGI_36417' => 'sgi', 'SGA_v2.0_scaffold165G38267' => 'sas', 'SGA_v2.0_scaffold28G11799' => 'sas', 'SGA_v2.0_scaffold70G23685' => 'sas', 'SMO137G0196' => 'smo', 'SMO174G0215' => 'smo', 'Solyc04g078520.3' => 'sly', 'Solyc05g005810.4' => 'sly', 'Solyc07g062950.4' => 'sly', 'Sopen04g032120' => 'spe', 'Sopen05g001820' => 'spe', 'Sopen07g031140' => 'spe', 'Sp2g04540' => 'spa', 'Sp3g13440' => 'spa', 'Sp6g15960' => 'spa', 'TAR371G0388' => 'tar', 'TAR371G1038' => 'tar', 'TAR622G0528' => 'tar', 'TAR622G0690' => 'tar', 'TAR624G1297' => 'tar', 'TAR626G0865' => 'tar', 'TAR626G1901' => 'tar', 'TAR627G0630' => 'tar', 'TAR627G1086' => 'tar', 'TAR629G0767' => 'tar', 'THA.LOC104811873' => 'tha', 'THA.LOC104816749' => 'tha', 'THA.LOC104818088' => 'tha', 'THA.LOC104819471' => 'tha', 'Thecc.02G246600' => 'tca', 'Thecc.07G095300' => 'tca', 'Thecc.08G001600' => 'tca', 'Thhalv10013822m.g' => 'esa', 'Thhalv10020987m.g' => 'esa', 'Thhalv10023517m.g' => 'esa', 'TPR.G3780' => 'tpr', 'TPR.G39821' => 'tpr', 'TPR.G4430' => 'tpr', 'TWI38G0429' => 'twi', 'TWI38G1311' => 'twi', 'TWI56G0457' => 'twi', 'TWI75G0695' => 'twi', 'unitig_0.g2265' => 'ugi', 'unitig_22.g6470' => 'ugi', 'unitig_22.g6471' => 'ugi', 'unitig_26.g10337' => 'ugi', 'unitig_26.g9337' => 'ugi', 'unitig_8.g3171' => 'ugi', 'unitig_8.g3640' => 'ugi', 'vmacro01192' => 'vma', 'vmacro09525' => 'vma', 'vmacro16268' => 'vma', 'vmacro21488' => 'vma', 'vmacro22611' => 'vma', 'VMungo1080G0436' => 'vmu', 'VMungo1127G0098' => 'vmu', 'VMungo1215G0073' => 'vmu', 'VMungo1309G1863' => 'vmu', 'VMungo1309G2802' => 'vmu', 'Zm00001eb150820' => 'zma', 'Zm00001eb254280' => 'zma', 'Zm00001eb369540' => 'zma', 'Zm00001eb372130' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001464' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001464' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001464' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001464' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001464', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '433', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p29040' => 'bna', 'A02p10750' => 'bna', 'A05p34240' => 'bna', 'A09p17700' => 'bna', 'A10p11290' => 'bna', 'Aa31LG2G10180' => 'aar', 'Aa31LG3G10040' => 'aar', 'Aa31LG8G2430' => 'aar', 'Actinidia01084' => 'ach', 'Actinidia08175' => 'ach', 'Actinidia15025' => 'ach', 'Actinidia18775' => 'ach', 'Actinidia22655' => 'ach', 'Actinidia27774' => 'ach', 'Actinidia32591' => 'ach', 'Actinidia35242' => 'ach', 'Ah.02g129740' => 'amhyb', 'Ah.04g164710' => 'amhyb', 'AL2G16630' => 'aly', 'AL3G27630' => 'aly', 'AL8G28980' => 'aly', 'Aqoxy1G02343' => 'aox', 'Aqoxy3G00949' => 'aox', 'Aqoxy3G03050' => 'aox', 'Aqoxy4G00711' => 'aox', 'Aqoxy5G01167_Aqoxy5G01168' => 'aox', 'arahy.Tifrunner.gnm1.ann1.D71PUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS6UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1NYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT2E5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRGB4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RD9LCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7VZNI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFL0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZL1FCV' => 'arhy', 'AT1G60060' => 'ath', 'AT3G15240' => 'ath', 'AT5G53900' => 'ath', 'ATR0580G446' => 'atr', 'ATR1094G020' => 'atr', 'ATR1149G003' => 'atr', 'Atru.chr11.1992' => 'acertr', 'Atru.chr13.746' => 'acertr', 'Atru.chr2.2431' => 'acertr', 'Atru.chr9.2429' => 'acertr', 'AUR62005336' => 'cqu', 'AUR62013988' => 'cqu', 'AUR62019456' => 'cqu', 'AUR62036174' => 'cqu', 'BcaB04g20248' => 'bca', 'BcaB04g20941' => 'bca', 'BcaB05g22084' => 'bca', 'BcaB06g29547' => 'bca', 'BcaB07g31200' => 'bca', 'BcaC03g14375' => 'bca', 'BcaC04g20407' => 'bca', 'BcaC04g22216' => 'bca', 'BcaC09g48480' => 'bca', 'BcaC09g49437' => 'bca', 'BNapus_Darmor_BZH_scaffold_155p00050' => 'bna', 'BolC1t03635H' => 'bol', 'BolC1t04892H' => 'bol', 'BolC2t07918H' => 'bol', 'BolC5t33885H' => 'bol', 'BolC9t55110H' => 'bol', 'BolC9t57273H' => 'bol', 'BolC9t57274H' => 'bol', 'BraA01t02992Z' => 'bra', 'BraA02t06136Z' => 'bra', 'BraA05t22244Z' => 'bra', 'BraA09t37398Z' => 'bra', 'BraA10t43221Z' => 'bra', 'C01p36760' => 'bna', 'C01p49330' => 'bna', 'C02p17870' => 'bna', 'C05p52000' => 'bna', 'C09p22040' => 'bna', 'C09p43910' => 'bna', 'C09p43920' => 'bna', 'CAN.G162.40' => 'can', 'CAN.G1812.6' => 'can', 'CAN.G205.15' => 'can', 'CANSAT01G3002' => 'cansat', 'CANSAT25G0979' => 'cansat', 'CANSAT54G0487' => 'cansat', 'CANSAT56G0549' => 'cansat', 'CANSAT56G3346' => 'cansat', 'CARHR052890' => 'chi', 'CARHR090220' => 'chi', 'CARHR267020' => 'chi', 'Carub.0002s0519' => 'cru', 'Carub.0003s1489' => 'cru', 'Carub.0008s1420' => 'cru', 'Ca_03517_v3' => 'car', 'Ca_03524_v3' => 'car', 'Ca_04613_v3' => 'car', 'Ca_13258_v3' => 'car', 'Cc05_g11820' => 'ccan', 'Cc10_g04830' => 'ccan', 'Cc11_g14410' => 'ccan', 'CDE04G2883' => 'cde', 'CDE05G0758' => 'cde', 'CDE07G0583' => 'cde', 'Cfa009118' => 'cfa', 'Cfa020563' => 'cfa', 'Ciclev10001451m.g' => 'ccl', 'Ciclev10008806m.g' => 'ccl', 'Ciclev10031899m.g' => 'ccl', 'CiPaw.05G148000' => 'cil', 'CiPaw.06G073100' => 'cil', 'CiPaw.11G171600' => 'cil', 'CiPaw.12G119900' => 'cil', 'CiPaw.15G052300' => 'cil', 'CiPaw.16G038100' => 'cil', 'ClCG05G020180' => 'cla', 'ClCG05G025150' => 'cla', 'ClCG11G017910' => 'cla', 'COL.COLO4_10120' => 'col', 'COL.COLO4_19528' => 'col', 'COL.COLO4_36706' => 'col', 'Cpa.g.c43713' => 'cpa', 'Cpa.g.sc21.157' => 'cpa', 'Cpa.g.sc258.11' => 'cpa', 'CsaV3_4G033540' => 'csa', 'CsaV3_4G034660' => 'csa', 'CsaV3_5G031750' => 'csa', 'CSS0003344' => 'camsi', 'CSS0005710' => 'camsi', 'CSS0009867' => 'camsi', 'CSS0014920' => 'camsi', 'CSS0018356' => 'camsi', 'CSS0031711' => 'camsi', 'DCAR_008819' => 'dca', 'DCAR_019566' => 'dca', 'DCAR_024136' => 'dca', 'Dinv14933' => 'din', 'Dinv20192' => 'din', 'Dinv24887' => 'din', 'Dinv31014' => 'din', 'Dinv31088' => 'din', 'Dinv39273' => 'din', 'Duzib041G0015' => 'dzi', 'Duzib093G0671' => 'dzi', 'Duzib170G0308' => 'dzi', 'Duzib213G0312' => 'dzi', 'Duzib248G0333' => 'dzi', 'Duzib251G0903' => 'dzi', 'Duzib268G0972' => 'dzi', 'Duzib268G1447' => 'dzi', 'ECA233G5992' => 'eca', 'ECA234G1389' => 'eca', 'ECA234G2098' => 'eca', 'ECA240G3101' => 'eca', 'ECA247G1320' => 'eca', 'EL10Ac4g08223' => 'bvu', 'EL10Ac6g13639' => 'bvu', 'Eucgr.B03947' => 'egr', 'Eucgr.F02309' => 'egr', 'Eucgr.F03300' => 'egr', 'FAN07G2436' => 'fan', 'FAN11G2636' => 'fan', 'FAN12G1037' => 'fan', 'FAN15G0298' => 'fan', 'FAN16G0887' => 'fan', 'FAN17G2701' => 'fan', 'FAN20G2540' => 'fan', 'FAN21G3771' => 'fan', 'FAN22G0058' => 'fan', 'FAN24G0010' => 'fan', 'FAN25G0658' => 'fan', 'FAN27G0260' => 'fan', 'FvH4_2g33720' => 'fve', 'FvH4_3g19620' => 'fve', 'FvH4_4g34860' => 'fve', 'Glyma.01G032600' => 'gma', 'Glyma.02G032700' => 'gma', 'Glyma.04G041700' => 'gma', 'Glyma.06G042700' => 'gma', 'Glyma.06G238400' => 'gma', 'Glyma.08G289500' => 'gma', 'Glyma.12G163053' => 'gma', 'Glyma.12G226200' => 'gma', 'Glyma.13G274700' => 'gma', 'Glyma.17G238900' => 'gma', 'Gohir.A01G061600' => 'ghi', 'Gohir.A03G141300' => 'ghi', 'Gohir.A04G034100' => 'ghi', 'Gohir.A05G205400' => 'ghi', 'Gohir.D01G048200' => 'ghi', 'Gohir.D02G164200' => 'ghi', 'Gohir.D05G208700' => 'ghi', 'Gohir.D05G349100' => 'ghi', 'Gorai.002G068000' => 'gra', 'Gorai.005G184200' => 'gra', 'Gorai.009G215100' => 'gra', 'Gorai.009G378800' => 'gra', 'Gorai.009G379000' => 'gra', 'GSVIVG01007796001' => 'vvi', 'GSVIVG01009438001' => 'vvi', 'GSVIVG01014299001' => 'vvi', 'GSVIVG01020205001' => 'vvi', 'HanXRQChr08g0208861' => 'han', 'HanXRQChr10g0288171' => 'han', 'HanXRQChr10g0302671' => 'han', 'HanXRQChr12g0361151' => 'han', 'HanXRQChr12g0364051' => 'han', 'HanXRQChr12g0383401' => 'han', 'HanXRQChr17g0570241' => 'han', 'Haze_09449' => 'cav', 'Haze_12154' => 'cav', 'Haze_18071' => 'cav', 'Hma1.2p1_0387F.1_g141970' => 'hma', 'Hma1.2p1_0634F.1_g193015' => 'hma', 'Hma1.2p1_0634F.1_g193030' => 'hma', 'Hma1.2p1_1017F.1_g248320' => 'hma', 'HPP92_012426' => 'vpl', 'HPP92_014194' => 'vpl', 'HPP92_016978' => 'vpl', 'HPP92_018293' => 'vpl', 'HPP92_026450' => 'vpl', 'HPP92_027886' => 'vpl', 'Hund22865' => 'sun', 'Hund25331' => 'sun', 'Lalb_Chr03g0030741' => 'lal', 'Lalb_Chr05g0217071' => 'lal', 'Lalb_Chr16g0382411' => 'lal', 'Lalb_Chr19g0134141' => 'lal', 'Lalb_Chr20g0109551' => 'lal', 'Lalb_Chr23g0267271' => 'lal', 'Lj1A840T51' => 'lonja', 'Lj1g0009830' => 'lja', 'Lj2g0010221' => 'lja', 'Lj3g0000525' => 'lja', 'Lj3g0001154' => 'lja', 'Lj4A63T85' => 'lonja', 'Lj5g0015457' => 'lja', 'Lj6C802T7' => 'lonja', 'Lsat_1_v5_gn_1_22421' => 'lsa', 'Lsat_1_v5_gn_4_7141' => 'lsa', 'Lsat_1_v5_gn_5_128181' => 'lsa', 'Lsat_1_v5_gn_8_157561' => 'lsa', 'Lsat_1_v5_gn_9_98881' => 'lsa', 'Manes.01G198000' => 'mes', 'Manes.05G089000' => 'mes', 'Manes.05G177000' => 'mes', 'Manes.15G089000' => 'mes', 'Mapoly0104s0004' => 'mpo', 'Mapoly0104s0005' => 'mpo', 'Mapoly0123s0025' => 'mpo', 'MBI14_g17747_MAGBIO' => 'mbi', 'MBI18_g42039_MAGBIO' => 'mbi', 'MD03G1230900' => 'mdo', 'MD08G1093800' => 'mdo', 'MD11G1252200' => 'mdo', 'MD13G1088900' => 'mdo', 'MD15G1077500' => 'mdo', 'MD15G1077600' => 'mdo', 'MD16G1089000' => 'mdo', 'Medtr1g018810' => 'mtr', 'Medtr2g078750' => 'mtr', 'Medtr5g034840' => 'mtr', 'MELO3C012014.2' => 'cme', 'MELO3C016782.2' => 'cme', 'MELO3C025601.2' => 'cme', 'Migut.H01952' => 'egut', 'Migut.L01435' => 'egut', 'Migut.N02730' => 'egut', 'MSTRG.12896' => 'ama', 'MSTRG.14355' => 'ama', 'MSTRG.607' => 'ama', 'MSTRG.7879' => 'ama', 'MSTRG.7880' => 'ama', 'Nitab4.5_0000052g0280' => 'nta', 'Nitab4.5_0002198g0030' => 'nta', 'Nitab4.5_0002330g0070' => 'nta', 'Nitab4.5_0004339g0080' => 'nta', 'Nitab4.5_0005232g0020' => 'nta', 'Nitab4.5_0006003g0010' => 'nta', 'Nitab4.5_0007216g0010' => 'nta', 'Nitab4.5_0010118g0030' => 'nta', 'Nn1g04168' => 'nnu', 'Nn1g04739' => 'nnu', 'Nn1g06457' => 'nnu', 'Nn3g16940' => 'nnu', 'Nn4g22853' => 'nnu', 'Nn5g30389' => 'nnu', 'Oeu019304.1' => 'oeu', 'Oeu025363.1' => 'oeu', 'Oeu025438.1' => 'oeu', 'Oeu037368.2' => 'oeu', 'Oeu037614.1' => 'oeu', 'Oeu045702.1' => 'oeu', 'Oeu051080.1' => 'oeu', 'Os02g0742700' => 'osa', 'Os06g0233800' => 'osa', 'Os11g0446000' => 'osa', 'Peaxi162Scf00010g02017' => 'pax', 'Peaxi162Scf00069g01733' => 'pax', 'Peaxi162Scf00421g00027' => 'pax', 'Peaxi162Scf01087g00126' => 'pax', 'PGR031G1567' => 'pgr', 'PGR031G3595' => 'pgr', 'PGR119G1860' => 'pgr', 'PGSC0003DMG400004129' => 'stu', 'PGSC0003DMG400007946' => 'stu', 'PGSC0003DMG400012407' => 'stu', 'Phvul.002G072900' => 'pvu', 'Phvul.005G074200' => 'pvu', 'Phvul.009G067400' => 'pvu', 'Phvul.011G165100' => 'pvu', 'Potri.001G397800' => 'ptr', 'Potri.010G096400' => 'ptr', 'Potri.011G116400' => 'ptr', 'Potri.014G024000' => 'ptr', 'Pp3c12_11470' => 'ppa', 'Pp3c13_20820' => 'ppa', 'Pp3c1_42150' => 'ppa', 'Pp3c25_12410' => 'ppa', 'Pp3c26_3400' => 'ppa', 'Pp3c3_12640' => 'ppa', 'Pp3c3_34790' => 'ppa', 'Pp3c4_23320' => 'ppa', 'Pp3c4_6910' => 'ppa', 'Prupe.1G256900' => 'ppe', 'Prupe.1G430900' => 'ppe', 'Prupe.2G207300' => 'ppe', 'Prupe.4G176900' => 'ppe', 'Psat2g106960' => 'psa', 'Psat5g242000' => 'psa', 'Psat6g014880' => 'psa', 'PSO017G3926' => 'pso', 'PSO063G2642' => 'pso', 'PSO170G4588' => 'pso', 'PSO210G1092' => 'pso', 'PSO478G1608' => 'pso', 'PSO541G3729' => 'pso', 'PSO675G1360' => 'pso', 'PSO832G1990' => 'pso', 'QL02p003995' => 'qlo', 'QL03p061967' => 'qlo', 'QL08p022567' => 'qlo', 'QL10p013557' => 'qlo', 'QL10p013564' => 'qlo', 'RcHm_v2.0_Chr4g0400741' => 'rch', 'RcHm_v2.0_Chr4g0444251' => 'rch', 'RcHm_v2.0_Chr5g0032811' => 'rch', 'RcHm_v2.0_Chr6g0308831' => 'rch', 'Rhsim04G0022400' => 'rsi', 'Rhsim12G0048200' => 'rsi', 'Sabra10G0068900' => 'sbr', 'Sabra11G0102000' => 'sbr', 'SalBow2G1020' => 'sbo', 'SalBow2G1597' => 'sbo', 'SalBow6G2631' => 'sbo', 'SalBow6G3109' => 'sbo', 'SalBow7G3611' => 'sbo', 'SalBow8G1514' => 'sbo', 'Sc04g0008990' => 'sci', 'Sc16g0007140' => 'sci', 'Sed0005883' => 'sed', 'Sed0012647' => 'sed', 'Sed0016196' => 'sed', 'Sed0017133' => 'sed', 'Sed0018762' => 'sed', 'Sed0021786' => 'sed', 'SEGI_01970' => 'sgi', 'SEGI_17554' => 'sgi', 'SEGI_21541' => 'sgi', 'SEGI_22891' => 'sgi', 'SEGI_30140' => 'sgi', 'SEGI_36417' => 'sgi', 'SGA_v2.0_scaffold165G38267' => 'sas', 'SGA_v2.0_scaffold28G11799' => 'sas', 'SGA_v2.0_scaffold70G23685' => 'sas', 'SMO137G0196' => 'smo', 'SMO174G0215' => 'smo', 'Solyc04g078520.3' => 'sly', 'Solyc05g005810.4' => 'sly', 'Solyc07g062950.4' => 'sly', 'Sopen04g032120' => 'spe', 'Sopen05g001820' => 'spe', 'Sopen07g031140' => 'spe', 'Sp2g04540' => 'spa', 'Sp3g13440' => 'spa', 'Sp6g15960' => 'spa', 'TAR371G0388' => 'tar', 'TAR371G1038' => 'tar', 'TAR622G0528' => 'tar', 'TAR622G0690' => 'tar', 'TAR624G1297' => 'tar', 'TAR626G0865' => 'tar', 'TAR626G1901' => 'tar', 'TAR627G0630' => 'tar', 'TAR627G1086' => 'tar', 'TAR629G0767' => 'tar', 'THA.LOC104811873' => 'tha', 'THA.LOC104816749' => 'tha', 'THA.LOC104818088' => 'tha', 'THA.LOC104819471' => 'tha', 'Thecc.02G246600' => 'tca', 'Thecc.07G095300' => 'tca', 'Thecc.08G001600' => 'tca', 'Thhalv10013822m.g' => 'esa', 'Thhalv10020987m.g' => 'esa', 'Thhalv10023517m.g' => 'esa', 'TPR.G3780' => 'tpr', 'TPR.G39821' => 'tpr', 'TPR.G4430' => 'tpr', 'TWI38G0429' => 'twi', 'TWI38G1311' => 'twi', 'TWI56G0457' => 'twi', 'TWI75G0695' => 'twi', 'unitig_0.g2265' => 'ugi', 'unitig_22.g6470' => 'ugi', 'unitig_22.g6471' => 'ugi', 'unitig_26.g10337' => 'ugi', 'unitig_26.g9337' => 'ugi', 'unitig_8.g3171' => 'ugi', 'unitig_8.g3640' => 'ugi', 'vmacro01192' => 'vma', 'vmacro09525' => 'vma', 'vmacro16268' => 'vma', 'vmacro21488' => 'vma', 'vmacro22611' => 'vma', 'VMungo1080G0436' => 'vmu', 'VMungo1127G0098' => 'vmu', 'VMungo1215G0073' => 'vmu', 'VMungo1309G1863' => 'vmu', 'VMungo1309G2802' => 'vmu', 'Zm00001eb150820' => 'zma', 'Zm00001eb254280' => 'zma', 'Zm00001eb369540' => 'zma', 'Zm00001eb372130' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001464', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001464' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001464', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '433', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001464' ) ), 'genes' => array( 'A01p29040' => 'bna', 'A02p10750' => 'bna', 'A05p34240' => 'bna', 'A09p17700' => 'bna', 'A10p11290' => 'bna', 'Aa31LG2G10180' => 'aar', 'Aa31LG3G10040' => 'aar', 'Aa31LG8G2430' => 'aar', 'Actinidia01084' => 'ach', 'Actinidia08175' => 'ach', 'Actinidia15025' => 'ach', 'Actinidia18775' => 'ach', 'Actinidia22655' => 'ach', 'Actinidia27774' => 'ach', 'Actinidia32591' => 'ach', 'Actinidia35242' => 'ach', 'Ah.02g129740' => 'amhyb', 'Ah.04g164710' => 'amhyb', 'AL2G16630' => 'aly', 'AL3G27630' => 'aly', 'AL8G28980' => 'aly', 'Aqoxy1G02343' => 'aox', 'Aqoxy3G00949' => 'aox', 'Aqoxy3G03050' => 'aox', 'Aqoxy4G00711' => 'aox', 'Aqoxy5G01167_Aqoxy5G01168' => 'aox', 'arahy.Tifrunner.gnm1.ann1.D71PUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS6UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1NYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT2E5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRGB4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RD9LCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7VZNI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFL0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZL1FCV' => 'arhy', 'AT1G60060' => 'ath', 'AT3G15240' => 'ath', 'AT5G53900' => 'ath', 'ATR0580G446' => 'atr', 'ATR1094G020' => 'atr', 'ATR1149G003' => 'atr', 'Atru.chr11.1992' => 'acertr', 'Atru.chr13.746' => 'acertr', 'Atru.chr2.2431' => 'acertr', 'Atru.chr9.2429' => 'acertr', 'AUR62005336' => 'cqu', 'AUR62013988' => 'cqu', 'AUR62019456' => 'cqu', 'AUR62036174' => 'cqu', 'BcaB04g20248' => 'bca', 'BcaB04g20941' => 'bca', 'BcaB05g22084' => 'bca', 'BcaB06g29547' => 'bca', 'BcaB07g31200' => 'bca', 'BcaC03g14375' => 'bca', 'BcaC04g20407' => 'bca', 'BcaC04g22216' => 'bca', 'BcaC09g48480' => 'bca', 'BcaC09g49437' => 'bca', 'BNapus_Darmor_BZH_scaffold_155p00050' => 'bna', 'BolC1t03635H' => 'bol', 'BolC1t04892H' => 'bol', 'BolC2t07918H' => 'bol', 'BolC5t33885H' => 'bol', 'BolC9t55110H' => 'bol', 'BolC9t57273H' => 'bol', 'BolC9t57274H' => 'bol', 'BraA01t02992Z' => 'bra', 'BraA02t06136Z' => 'bra', 'BraA05t22244Z' => 'bra', 'BraA09t37398Z' => 'bra', 'BraA10t43221Z' => 'bra', 'C01p36760' => 'bna', 'C01p49330' => 'bna', 'C02p17870' => 'bna', 'C05p52000' => 'bna', 'C09p22040' => 'bna', 'C09p43910' => 'bna', 'C09p43920' => 'bna', 'CAN.G162.40' => 'can', 'CAN.G1812.6' => 'can', 'CAN.G205.15' => 'can', 'CANSAT01G3002' => 'cansat', 'CANSAT25G0979' => 'cansat', 'CANSAT54G0487' => 'cansat', 'CANSAT56G0549' => 'cansat', 'CANSAT56G3346' => 'cansat', 'CARHR052890' => 'chi', 'CARHR090220' => 'chi', 'CARHR267020' => 'chi', 'Carub.0002s0519' => 'cru', 'Carub.0003s1489' => 'cru', 'Carub.0008s1420' => 'cru', 'Ca_03517_v3' => 'car', 'Ca_03524_v3' => 'car', 'Ca_04613_v3' => 'car', 'Ca_13258_v3' => 'car', 'Cc05_g11820' => 'ccan', 'Cc10_g04830' => 'ccan', 'Cc11_g14410' => 'ccan', 'CDE04G2883' => 'cde', 'CDE05G0758' => 'cde', 'CDE07G0583' => 'cde', 'Cfa009118' => 'cfa', 'Cfa020563' => 'cfa', 'Ciclev10001451m.g' => 'ccl', 'Ciclev10008806m.g' => 'ccl', 'Ciclev10031899m.g' => 'ccl', 'CiPaw.05G148000' => 'cil', 'CiPaw.06G073100' => 'cil', 'CiPaw.11G171600' => 'cil', 'CiPaw.12G119900' => 'cil', 'CiPaw.15G052300' => 'cil', 'CiPaw.16G038100' => 'cil', 'ClCG05G020180' => 'cla', 'ClCG05G025150' => 'cla', 'ClCG11G017910' => 'cla', 'COL.COLO4_10120' => 'col', 'COL.COLO4_19528' => 'col', 'COL.COLO4_36706' => 'col', 'Cpa.g.c43713' => 'cpa', 'Cpa.g.sc21.157' => 'cpa', 'Cpa.g.sc258.11' => 'cpa', 'CsaV3_4G033540' => 'csa', 'CsaV3_4G034660' => 'csa', 'CsaV3_5G031750' => 'csa', 'CSS0003344' => 'camsi', 'CSS0005710' => 'camsi', 'CSS0009867' => 'camsi', 'CSS0014920' => 'camsi', 'CSS0018356' => 'camsi', 'CSS0031711' => 'camsi', 'DCAR_008819' => 'dca', 'DCAR_019566' => 'dca', 'DCAR_024136' => 'dca', 'Dinv14933' => 'din', 'Dinv20192' => 'din', 'Dinv24887' => 'din', 'Dinv31014' => 'din', 'Dinv31088' => 'din', 'Dinv39273' => 'din', 'Duzib041G0015' => 'dzi', 'Duzib093G0671' => 'dzi', 'Duzib170G0308' => 'dzi', 'Duzib213G0312' => 'dzi', 'Duzib248G0333' => 'dzi', 'Duzib251G0903' => 'dzi', 'Duzib268G0972' => 'dzi', 'Duzib268G1447' => 'dzi', 'ECA233G5992' => 'eca', 'ECA234G1389' => 'eca', 'ECA234G2098' => 'eca', 'ECA240G3101' => 'eca', 'ECA247G1320' => 'eca', 'EL10Ac4g08223' => 'bvu', 'EL10Ac6g13639' => 'bvu', 'Eucgr.B03947' => 'egr', 'Eucgr.F02309' => 'egr', 'Eucgr.F03300' => 'egr', 'FAN07G2436' => 'fan', 'FAN11G2636' => 'fan', 'FAN12G1037' => 'fan', 'FAN15G0298' => 'fan', 'FAN16G0887' => 'fan', 'FAN17G2701' => 'fan', 'FAN20G2540' => 'fan', 'FAN21G3771' => 'fan', 'FAN22G0058' => 'fan', 'FAN24G0010' => 'fan', 'FAN25G0658' => 'fan', 'FAN27G0260' => 'fan', 'FvH4_2g33720' => 'fve', 'FvH4_3g19620' => 'fve', 'FvH4_4g34860' => 'fve', 'Glyma.01G032600' => 'gma', 'Glyma.02G032700' => 'gma', 'Glyma.04G041700' => 'gma', 'Glyma.06G042700' => 'gma', 'Glyma.06G238400' => 'gma', 'Glyma.08G289500' => 'gma', 'Glyma.12G163053' => 'gma', 'Glyma.12G226200' => 'gma', 'Glyma.13G274700' => 'gma', 'Glyma.17G238900' => 'gma', 'Gohir.A01G061600' => 'ghi', 'Gohir.A03G141300' => 'ghi', 'Gohir.A04G034100' => 'ghi', 'Gohir.A05G205400' => 'ghi', 'Gohir.D01G048200' => 'ghi', 'Gohir.D02G164200' => 'ghi', 'Gohir.D05G208700' => 'ghi', 'Gohir.D05G349100' => 'ghi', 'Gorai.002G068000' => 'gra', 'Gorai.005G184200' => 'gra', 'Gorai.009G215100' => 'gra', 'Gorai.009G378800' => 'gra', 'Gorai.009G379000' => 'gra', 'GSVIVG01007796001' => 'vvi', 'GSVIVG01009438001' => 'vvi', 'GSVIVG01014299001' => 'vvi', 'GSVIVG01020205001' => 'vvi', 'HanXRQChr08g0208861' => 'han', 'HanXRQChr10g0288171' => 'han', 'HanXRQChr10g0302671' => 'han', 'HanXRQChr12g0361151' => 'han', 'HanXRQChr12g0364051' => 'han', 'HanXRQChr12g0383401' => 'han', 'HanXRQChr17g0570241' => 'han', 'Haze_09449' => 'cav', 'Haze_12154' => 'cav', 'Haze_18071' => 'cav', 'Hma1.2p1_0387F.1_g141970' => 'hma', 'Hma1.2p1_0634F.1_g193015' => 'hma', 'Hma1.2p1_0634F.1_g193030' => 'hma', 'Hma1.2p1_1017F.1_g248320' => 'hma', 'HPP92_012426' => 'vpl', 'HPP92_014194' => 'vpl', 'HPP92_016978' => 'vpl', 'HPP92_018293' => 'vpl', 'HPP92_026450' => 'vpl', 'HPP92_027886' => 'vpl', 'Hund22865' => 'sun', 'Hund25331' => 'sun', 'Lalb_Chr03g0030741' => 'lal', 'Lalb_Chr05g0217071' => 'lal', 'Lalb_Chr16g0382411' => 'lal', 'Lalb_Chr19g0134141' => 'lal', 'Lalb_Chr20g0109551' => 'lal', 'Lalb_Chr23g0267271' => 'lal', 'Lj1A840T51' => 'lonja', 'Lj1g0009830' => 'lja', 'Lj2g0010221' => 'lja', 'Lj3g0000525' => 'lja', 'Lj3g0001154' => 'lja', 'Lj4A63T85' => 'lonja', 'Lj5g0015457' => 'lja', 'Lj6C802T7' => 'lonja', 'Lsat_1_v5_gn_1_22421' => 'lsa', 'Lsat_1_v5_gn_4_7141' => 'lsa', 'Lsat_1_v5_gn_5_128181' => 'lsa', 'Lsat_1_v5_gn_8_157561' => 'lsa', 'Lsat_1_v5_gn_9_98881' => 'lsa', 'Manes.01G198000' => 'mes', 'Manes.05G089000' => 'mes', 'Manes.05G177000' => 'mes', 'Manes.15G089000' => 'mes', 'Mapoly0104s0004' => 'mpo', 'Mapoly0104s0005' => 'mpo', 'Mapoly0123s0025' => 'mpo', 'MBI14_g17747_MAGBIO' => 'mbi', 'MBI18_g42039_MAGBIO' => 'mbi', 'MD03G1230900' => 'mdo', 'MD08G1093800' => 'mdo', 'MD11G1252200' => 'mdo', 'MD13G1088900' => 'mdo', 'MD15G1077500' => 'mdo', 'MD15G1077600' => 'mdo', 'MD16G1089000' => 'mdo', 'Medtr1g018810' => 'mtr', 'Medtr2g078750' => 'mtr', 'Medtr5g034840' => 'mtr', 'MELO3C012014.2' => 'cme', 'MELO3C016782.2' => 'cme', 'MELO3C025601.2' => 'cme', 'Migut.H01952' => 'egut', 'Migut.L01435' => 'egut', 'Migut.N02730' => 'egut', 'MSTRG.12896' => 'ama', 'MSTRG.14355' => 'ama', 'MSTRG.607' => 'ama', 'MSTRG.7879' => 'ama', 'MSTRG.7880' => 'ama', 'Nitab4.5_0000052g0280' => 'nta', 'Nitab4.5_0002198g0030' => 'nta', 'Nitab4.5_0002330g0070' => 'nta', 'Nitab4.5_0004339g0080' => 'nta', 'Nitab4.5_0005232g0020' => 'nta', 'Nitab4.5_0006003g0010' => 'nta', 'Nitab4.5_0007216g0010' => 'nta', 'Nitab4.5_0010118g0030' => 'nta', 'Nn1g04168' => 'nnu', 'Nn1g04739' => 'nnu', 'Nn1g06457' => 'nnu', 'Nn3g16940' => 'nnu', 'Nn4g22853' => 'nnu', 'Nn5g30389' => 'nnu', 'Oeu019304.1' => 'oeu', 'Oeu025363.1' => 'oeu', 'Oeu025438.1' => 'oeu', 'Oeu037368.2' => 'oeu', 'Oeu037614.1' => 'oeu', 'Oeu045702.1' => 'oeu', 'Oeu051080.1' => 'oeu', 'Os02g0742700' => 'osa', 'Os06g0233800' => 'osa', 'Os11g0446000' => 'osa', 'Peaxi162Scf00010g02017' => 'pax', 'Peaxi162Scf00069g01733' => 'pax', 'Peaxi162Scf00421g00027' => 'pax', 'Peaxi162Scf01087g00126' => 'pax', 'PGR031G1567' => 'pgr', 'PGR031G3595' => 'pgr', 'PGR119G1860' => 'pgr', 'PGSC0003DMG400004129' => 'stu', 'PGSC0003DMG400007946' => 'stu', 'PGSC0003DMG400012407' => 'stu', 'Phvul.002G072900' => 'pvu', 'Phvul.005G074200' => 'pvu', 'Phvul.009G067400' => 'pvu', 'Phvul.011G165100' => 'pvu', 'Potri.001G397800' => 'ptr', 'Potri.010G096400' => 'ptr', 'Potri.011G116400' => 'ptr', 'Potri.014G024000' => 'ptr', 'Pp3c12_11470' => 'ppa', 'Pp3c13_20820' => 'ppa', 'Pp3c1_42150' => 'ppa', 'Pp3c25_12410' => 'ppa', 'Pp3c26_3400' => 'ppa', 'Pp3c3_12640' => 'ppa', 'Pp3c3_34790' => 'ppa', 'Pp3c4_23320' => 'ppa', 'Pp3c4_6910' => 'ppa', 'Prupe.1G256900' => 'ppe', 'Prupe.1G430900' => 'ppe', 'Prupe.2G207300' => 'ppe', 'Prupe.4G176900' => 'ppe', 'Psat2g106960' => 'psa', 'Psat5g242000' => 'psa', 'Psat6g014880' => 'psa', 'PSO017G3926' => 'pso', 'PSO063G2642' => 'pso', 'PSO170G4588' => 'pso', 'PSO210G1092' => 'pso', 'PSO478G1608' => 'pso', 'PSO541G3729' => 'pso', 'PSO675G1360' => 'pso', 'PSO832G1990' => 'pso', 'QL02p003995' => 'qlo', 'QL03p061967' => 'qlo', 'QL08p022567' => 'qlo', 'QL10p013557' => 'qlo', 'QL10p013564' => 'qlo', 'RcHm_v2.0_Chr4g0400741' => 'rch', 'RcHm_v2.0_Chr4g0444251' => 'rch', 'RcHm_v2.0_Chr5g0032811' => 'rch', 'RcHm_v2.0_Chr6g0308831' => 'rch', 'Rhsim04G0022400' => 'rsi', 'Rhsim12G0048200' => 'rsi', 'Sabra10G0068900' => 'sbr', 'Sabra11G0102000' => 'sbr', 'SalBow2G1020' => 'sbo', 'SalBow2G1597' => 'sbo', 'SalBow6G2631' => 'sbo', 'SalBow6G3109' => 'sbo', 'SalBow7G3611' => 'sbo', 'SalBow8G1514' => 'sbo', 'Sc04g0008990' => 'sci', 'Sc16g0007140' => 'sci', 'Sed0005883' => 'sed', 'Sed0012647' => 'sed', 'Sed0016196' => 'sed', 'Sed0017133' => 'sed', 'Sed0018762' => 'sed', 'Sed0021786' => 'sed', 'SEGI_01970' => 'sgi', 'SEGI_17554' => 'sgi', 'SEGI_21541' => 'sgi', 'SEGI_22891' => 'sgi', 'SEGI_30140' => 'sgi', 'SEGI_36417' => 'sgi', 'SGA_v2.0_scaffold165G38267' => 'sas', 'SGA_v2.0_scaffold28G11799' => 'sas', 'SGA_v2.0_scaffold70G23685' => 'sas', 'SMO137G0196' => 'smo', 'SMO174G0215' => 'smo', 'Solyc04g078520.3' => 'sly', 'Solyc05g005810.4' => 'sly', 'Solyc07g062950.4' => 'sly', 'Sopen04g032120' => 'spe', 'Sopen05g001820' => 'spe', 'Sopen07g031140' => 'spe', 'Sp2g04540' => 'spa', 'Sp3g13440' => 'spa', 'Sp6g15960' => 'spa', 'TAR371G0388' => 'tar', 'TAR371G1038' => 'tar', 'TAR622G0528' => 'tar', 'TAR622G0690' => 'tar', 'TAR624G1297' => 'tar', 'TAR626G0865' => 'tar', 'TAR626G1901' => 'tar', 'TAR627G0630' => 'tar', 'TAR627G1086' => 'tar', 'TAR629G0767' => 'tar', 'THA.LOC104811873' => 'tha', 'THA.LOC104816749' => 'tha', 'THA.LOC104818088' => 'tha', 'THA.LOC104819471' => 'tha', 'Thecc.02G246600' => 'tca', 'Thecc.07G095300' => 'tca', 'Thecc.08G001600' => 'tca', 'Thhalv10013822m.g' => 'esa', 'Thhalv10020987m.g' => 'esa', 'Thhalv10023517m.g' => 'esa', 'TPR.G3780' => 'tpr', 'TPR.G39821' => 'tpr', 'TPR.G4430' => 'tpr', 'TWI38G0429' => 'twi', 'TWI38G1311' => 'twi', 'TWI56G0457' => 'twi', 'TWI75G0695' => 'twi', 'unitig_0.g2265' => 'ugi', 'unitig_22.g6470' => 'ugi', 'unitig_22.g6471' => 'ugi', 'unitig_26.g10337' => 'ugi', 'unitig_26.g9337' => 'ugi', 'unitig_8.g3171' => 'ugi', 'unitig_8.g3640' => 'ugi', 'vmacro01192' => 'vma', 'vmacro09525' => 'vma', 'vmacro16268' => 'vma', 'vmacro21488' => 'vma', 'vmacro22611' => 'vma', 'VMungo1080G0436' => 'vmu', 'VMungo1127G0098' => 'vmu', 'VMungo1215G0073' => 'vmu', 'VMungo1309G1863' => 'vmu', 'VMungo1309G2802' => 'vmu', 'Zm00001eb150820' => 'zma', 'Zm00001eb254280' => 'zma', 'Zm00001eb369540' => 'zma', 'Zm00001eb372130' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001464' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001464' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001464' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001464' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151