Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p29040 Brassica napus
A02p10750 Brassica napus
A05p34240 Brassica napus
A09p17700 Brassica napus
A10p11290 Brassica napus
Aa31LG2G10180 Aethionema arabicum
Aa31LG3G10040 Aethionema arabicum
Aa31LG8G2430 Aethionema arabicum
Actinidia01084 Actinidia chinensis
Actinidia08175 Actinidia chinensis
Actinidia15025 Actinidia chinensis
Actinidia18775 Actinidia chinensis
Actinidia22655 Actinidia chinensis
Actinidia27774 Actinidia chinensis
Actinidia32591 Actinidia chinensis
Actinidia35242 Actinidia chinensis
Ah.02g129740 Amaranthus hybridus
Ah.04g164710 Amaranthus hybridus
AL2G16630 Arabidopsis lyrata
AL3G27630 Arabidopsis lyrata
AL8G28980 Arabidopsis lyrata
Aqoxy1G02343 Aquilegia oxysepala
Aqoxy3G00949 Aquilegia oxysepala
Aqoxy3G03050 Aquilegia oxysepala
Aqoxy4G00711 Aquilegia oxysepala
Aqoxy5G01167_Aqoxy5G01168 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.D71PUX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DS6UFT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F1NYBZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IT2E5A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JRGB4J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RD9LCV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X7VZNI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XFL0DY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZL1FCV Arachis hypogaea
AT1G60060 Arabidopsis thaliana
AT3G15240 Arabidopsis thaliana
AT5G53900 Arabidopsis thaliana
ATR0580G446 Amborella trichopoda
ATR1094G020 Amborella trichopoda
ATR1149G003 Amborella trichopoda
Atru.chr11.1992 Acer truncatum
Atru.chr13.746 Acer truncatum
Atru.chr2.2431 Acer truncatum
Atru.chr9.2429 Acer truncatum
AUR62005336 Chenopodium quinoa
AUR62013988 Chenopodium quinoa
AUR62019456 Chenopodium quinoa
AUR62036174 Chenopodium quinoa
BcaB04g20248 Brassica carinata
BcaB04g20941 Brassica carinata
BcaB05g22084 Brassica carinata
BcaB06g29547 Brassica carinata
BcaB07g31200 Brassica carinata
BcaC03g14375 Brassica carinata
BcaC04g20407 Brassica carinata
BcaC04g22216 Brassica carinata
BcaC09g48480 Brassica carinata
BcaC09g49437 Brassica carinata
BNapus_Darmor_BZH_scaffold_155p00050 Brassica napus
BolC1t03635H Brassica oleracea
BolC1t04892H Brassica oleracea
BolC2t07918H Brassica oleracea
BolC5t33885H Brassica oleracea
BolC9t55110H Brassica oleracea
BolC9t57273H Brassica oleracea
BolC9t57274H Brassica oleracea
BraA01t02992Z Brassica rapa
BraA02t06136Z Brassica rapa
BraA05t22244Z Brassica rapa
BraA09t37398Z Brassica rapa
BraA10t43221Z Brassica rapa
C01p36760 Brassica napus
C01p49330 Brassica napus
C02p17870 Brassica napus
C05p52000 Brassica napus
C09p22040 Brassica napus
C09p43910 Brassica napus
C09p43920 Brassica napus
CAN.G162.40 Capsicum annuum
CAN.G1812.6 Capsicum annuum
CAN.G205.15 Capsicum annuum
CANSAT01G3002 Cannabis sativa
CANSAT25G0979 Cannabis sativa
CANSAT54G0487 Cannabis sativa
CANSAT56G0549 Cannabis sativa
CANSAT56G3346 Cannabis sativa
CARHR052890 Cardamine hirsuta
CARHR090220 Cardamine hirsuta
CARHR267020 Cardamine hirsuta
Carub.0002s0519 Capsella rubella
Carub.0003s1489 Capsella rubella
Carub.0008s1420 Capsella rubella
Ca_03517_v3 Cicer arietinum L.
Ca_03524_v3 Cicer arietinum L.
Ca_04613_v3 Cicer arietinum L.
Ca_13258_v3 Cicer arietinum L.
Cc05_g11820 Coffea canephora
Cc10_g04830 Coffea canephora
Cc11_g14410 Coffea canephora
CDE04G2883 Ceratophyllum demersum
CDE05G0758 Ceratophyllum demersum
CDE07G0583 Ceratophyllum demersum
Cfa009118 Carpinus fangiana
Cfa020563 Carpinus fangiana
Ciclev10001451m.g Citrus clementina
Ciclev10008806m.g Citrus clementina
Ciclev10031899m.g Citrus clementina
CiPaw.05G148000 Carya illinoinensis
CiPaw.06G073100 Carya illinoinensis
CiPaw.11G171600 Carya illinoinensis
CiPaw.12G119900 Carya illinoinensis
CiPaw.15G052300 Carya illinoinensis
CiPaw.16G038100 Carya illinoinensis
ClCG05G020180 Citrullus lanatus
ClCG05G025150 Citrullus lanatus
ClCG11G017910 Citrullus lanatus
COL.COLO4_10120 Corchorus olitorius
COL.COLO4_19528 Corchorus olitorius
COL.COLO4_36706 Corchorus olitorius
Cpa.g.c43713 Carica papaya
Cpa.g.sc21.157 Carica papaya
Cpa.g.sc258.11 Carica papaya
CsaV3_4G033540 Cucumis sativus L.
CsaV3_4G034660 Cucumis sativus L.
CsaV3_5G031750 Cucumis sativus L.
CSS0003344 Camellia sinensis var. sinensis
CSS0005710 Camellia sinensis var. sinensis
CSS0009867 Camellia sinensis var. sinensis
CSS0014920 Camellia sinensis var. sinensis
CSS0018356 Camellia sinensis var. sinensis
CSS0031711 Camellia sinensis var. sinensis
DCAR_008819 Daucus carota
DCAR_019566 Daucus carota
DCAR_024136 Daucus carota
Dinv14933 Davidia involucrata
Dinv20192 Davidia involucrata
Dinv24887 Davidia involucrata
Dinv31014 Davidia involucrata
Dinv31088 Davidia involucrata
Dinv39273 Davidia involucrata
Duzib041G0015 Durio zibethinus
Duzib093G0671 Durio zibethinus
Duzib170G0308 Durio zibethinus
Duzib213G0312 Durio zibethinus
Duzib248G0333 Durio zibethinus
Duzib251G0903 Durio zibethinus
Duzib268G0972 Durio zibethinus
Duzib268G1447 Durio zibethinus
ECA233G5992 Erigeron canadensis
ECA234G1389 Erigeron canadensis
ECA234G2098 Erigeron canadensis
ECA240G3101 Erigeron canadensis
ECA247G1320 Erigeron canadensis
EL10Ac4g08223 Beta vulgaris
EL10Ac6g13639 Beta vulgaris
Eucgr.B03947 Eucalyptus grandis
Eucgr.F02309 Eucalyptus grandis
Eucgr.F03300 Eucalyptus grandis
FAN07G2436 Fragaria x ananassa
FAN11G2636 Fragaria x ananassa
FAN12G1037 Fragaria x ananassa
FAN15G0298 Fragaria x ananassa
FAN16G0887 Fragaria x ananassa
FAN17G2701 Fragaria x ananassa
FAN20G2540 Fragaria x ananassa
FAN21G3771 Fragaria x ananassa
FAN22G0058 Fragaria x ananassa
FAN24G0010 Fragaria x ananassa
FAN25G0658 Fragaria x ananassa
FAN27G0260 Fragaria x ananassa
FvH4_2g33720 Fragaria vesca
FvH4_3g19620 Fragaria vesca
FvH4_4g34860 Fragaria vesca
Glyma.01G032600 Glycine max
Glyma.02G032700 Glycine max
Glyma.04G041700 Glycine max
Glyma.06G042700 Glycine max
Glyma.06G238400 Glycine max
Glyma.08G289500 Glycine max
Glyma.12G163053 Glycine max
Glyma.12G226200 Glycine max
Glyma.13G274700 Glycine max
Glyma.17G238900 Glycine max
Gohir.A01G061600 Gossypium hirsutum
Gohir.A03G141300 Gossypium hirsutum
Gohir.A04G034100 Gossypium hirsutum
Gohir.A05G205400 Gossypium hirsutum
Gohir.D01G048200 Gossypium hirsutum
Gohir.D02G164200 Gossypium hirsutum
Gohir.D05G208700 Gossypium hirsutum
Gohir.D05G349100 Gossypium hirsutum
Gorai.002G068000 Gossypium raimondii
Gorai.005G184200 Gossypium raimondii
Gorai.009G215100 Gossypium raimondii
Gorai.009G378800 Gossypium raimondii
Gorai.009G379000 Gossypium raimondii
GSVIVG01007796001 Vitis vinifera
GSVIVG01009438001 Vitis vinifera
GSVIVG01014299001 Vitis vinifera
GSVIVG01020205001 Vitis vinifera
HanXRQChr08g0208861 Helianthus annuus
HanXRQChr10g0288171 Helianthus annuus
HanXRQChr10g0302671 Helianthus annuus
HanXRQChr12g0361151 Helianthus annuus
HanXRQChr12g0364051 Helianthus annuus
HanXRQChr12g0383401 Helianthus annuus
HanXRQChr17g0570241 Helianthus annuus
Haze_09449 Corylus avellana
Haze_12154 Corylus avellana
Haze_18071 Corylus avellana
Hma1.2p1_0387F.1_g141970 Hydrangea macrophylla
Hma1.2p1_0634F.1_g193015 Hydrangea macrophylla
Hma1.2p1_0634F.1_g193030 Hydrangea macrophylla
Hma1.2p1_1017F.1_g248320 Hydrangea macrophylla
HPP92_012426 Vanilla planifolia
HPP92_014194 Vanilla planifolia
HPP92_016978 Vanilla planifolia
HPP92_018293 Vanilla planifolia
HPP92_026450 Vanilla planifolia
HPP92_027886 Vanilla planifolia
Hund22865 Selenicereus undatus
Hund25331 Selenicereus undatus
Lalb_Chr03g0030741 Lupinus albus
Lalb_Chr05g0217071 Lupinus albus
Lalb_Chr16g0382411 Lupinus albus
Lalb_Chr19g0134141 Lupinus albus
Lalb_Chr20g0109551 Lupinus albus
Lalb_Chr23g0267271 Lupinus albus
Lj1A840T51 Lonicera japonica
Lj1g0009830 Lotus japonicus
Lj2g0010221 Lotus japonicus
Lj3g0000525 Lotus japonicus
Lj3g0001154 Lotus japonicus
Lj4A63T85 Lonicera japonica
Lj5g0015457 Lotus japonicus
Lj6C802T7 Lonicera japonica
Lsat_1_v5_gn_1_22421 Lactuca sativa
Lsat_1_v5_gn_4_7141 Lactuca sativa
Lsat_1_v5_gn_5_128181 Lactuca sativa
Lsat_1_v5_gn_8_157561 Lactuca sativa
Lsat_1_v5_gn_9_98881 Lactuca sativa
Manes.01G198000 Manihot esculenta
Manes.05G089000 Manihot esculenta
Manes.05G177000 Manihot esculenta
Manes.15G089000 Manihot esculenta
Mapoly0104s0004 Marchantia polymorpha
Mapoly0104s0005 Marchantia polymorpha
Mapoly0123s0025 Marchantia polymorpha
MBI14_g17747_MAGBIO Magnolia biondii
MBI18_g42039_MAGBIO Magnolia biondii
MD03G1230900 Malus domestica
MD08G1093800 Malus domestica
MD11G1252200 Malus domestica
MD13G1088900 Malus domestica
MD15G1077500 Malus domestica
MD15G1077600 Malus domestica
MD16G1089000 Malus domestica
Medtr1g018810 Medicago truncatula
Medtr2g078750 Medicago truncatula
Medtr5g034840 Medicago truncatula
MELO3C012014.2 Cucumis melo
MELO3C016782.2 Cucumis melo
MELO3C025601.2 Cucumis melo
Migut.H01952 Erythranthe guttata
Migut.L01435 Erythranthe guttata
Migut.N02730 Erythranthe guttata
MSTRG.12896 Avicennia marina
MSTRG.14355 Avicennia marina
MSTRG.607 Avicennia marina
MSTRG.7879 Avicennia marina
MSTRG.7880 Avicennia marina
Nitab4.5_0000052g0280 Nicotiana tabacum
Nitab4.5_0002198g0030 Nicotiana tabacum
Nitab4.5_0002330g0070 Nicotiana tabacum
Nitab4.5_0004339g0080 Nicotiana tabacum
Nitab4.5_0005232g0020 Nicotiana tabacum
Nitab4.5_0006003g0010 Nicotiana tabacum
Nitab4.5_0007216g0010 Nicotiana tabacum
Nitab4.5_0010118g0030 Nicotiana tabacum
Nn1g04168 Nelumbo nucifera
Nn1g04739 Nelumbo nucifera
Nn1g06457 Nelumbo nucifera
Nn3g16940 Nelumbo nucifera
Nn4g22853 Nelumbo nucifera
Nn5g30389 Nelumbo nucifera
Oeu019304.1 Olea europaea
Oeu025363.1 Olea europaea
Oeu025438.1 Olea europaea
Oeu037368.2 Olea europaea
Oeu037614.1 Olea europaea
Oeu045702.1 Olea europaea
Oeu051080.1 Olea europaea
Os02g0742700 Oryza sativa ssp. japonica
Os06g0233800 Oryza sativa ssp. japonica
Os11g0446000 Oryza sativa ssp. japonica
Peaxi162Scf00010g02017 Petunia axillaris
Peaxi162Scf00069g01733 Petunia axillaris
Peaxi162Scf00421g00027 Petunia axillaris
Peaxi162Scf01087g00126 Petunia axillaris
PGR031G1567 Punica granatum
PGR031G3595 Punica granatum
PGR119G1860 Punica granatum
PGSC0003DMG400004129 Solanum tuberosum
PGSC0003DMG400007946 Solanum tuberosum
PGSC0003DMG400012407 Solanum tuberosum
Phvul.002G072900 Phaseolus vulgaris
Phvul.005G074200 Phaseolus vulgaris
Phvul.009G067400 Phaseolus vulgaris
Phvul.011G165100 Phaseolus vulgaris
Potri.001G397800 Populus trichocarpa
Potri.010G096400 Populus trichocarpa
Potri.011G116400 Populus trichocarpa
Potri.014G024000 Populus trichocarpa
Pp3c12_11470 Physcomitrium patens
Pp3c13_20820 Physcomitrium patens
Pp3c1_42150 Physcomitrium patens
Pp3c25_12410 Physcomitrium patens
Pp3c26_3400 Physcomitrium patens
Pp3c3_12640 Physcomitrium patens
Pp3c3_34790 Physcomitrium patens
Pp3c4_23320 Physcomitrium patens
Pp3c4_6910 Physcomitrium patens
Prupe.1G256900 Prunus persica
Prupe.1G430900 Prunus persica
Prupe.2G207300 Prunus persica
Prupe.4G176900 Prunus persica
Psat2g106960 Pisum sativum
Psat5g242000 Pisum sativum
Psat6g014880 Pisum sativum
PSO017G3926 Papaver somniferum
PSO063G2642 Papaver somniferum
PSO170G4588 Papaver somniferum
PSO210G1092 Papaver somniferum
PSO478G1608 Papaver somniferum
PSO541G3729 Papaver somniferum
PSO675G1360 Papaver somniferum
PSO832G1990 Papaver somniferum
QL02p003995 Quercus lobata
QL03p061967 Quercus lobata
QL08p022567 Quercus lobata
QL10p013557 Quercus lobata
QL10p013564 Quercus lobata
RcHm_v2.0_Chr4g0400741 Rosa chinensis
RcHm_v2.0_Chr4g0444251 Rosa chinensis
RcHm_v2.0_Chr5g0032811 Rosa chinensis
RcHm_v2.0_Chr6g0308831 Rosa chinensis
Rhsim04G0022400 Rhododendron simsii
Rhsim12G0048200 Rhododendron simsii
Sabra10G0068900 Salix brachista
Sabra11G0102000 Salix brachista
SalBow2G1020 Salvia bowleyana
SalBow2G1597 Salvia bowleyana
SalBow6G2631 Salvia bowleyana
SalBow6G3109 Salvia bowleyana
SalBow7G3611 Salvia bowleyana
SalBow8G1514 Salvia bowleyana
Sc04g0008990 Simmondsia chinensis
Sc16g0007140 Simmondsia chinensis
Sed0005883 Sechium edule
Sed0012647 Sechium edule
Sed0016196 Sechium edule
Sed0017133 Sechium edule
Sed0018762 Sechium edule
Sed0021786 Sechium edule
SEGI_01970 Sequoiadendron giganteum
SEGI_17554 Sequoiadendron giganteum
SEGI_21541 Sequoiadendron giganteum
SEGI_22891 Sequoiadendron giganteum
SEGI_30140 Sequoiadendron giganteum
SEGI_36417 Sequoiadendron giganteum
SGA_v2.0_scaffold165G38267 Striga asiatica
SGA_v2.0_scaffold28G11799 Striga asiatica
SGA_v2.0_scaffold70G23685 Striga asiatica
SMO137G0196 Selaginella moellendorffii
SMO174G0215 Selaginella moellendorffii
Solyc04g078520.3 Solanum lycopersicum
Solyc05g005810.4 Solanum lycopersicum
Solyc07g062950.4 Solanum lycopersicum
Sopen04g032120 Solanum pennellii
Sopen05g001820 Solanum pennellii
Sopen07g031140 Solanum pennellii
Sp2g04540 Schrenkiella parvula
Sp3g13440 Schrenkiella parvula
Sp6g15960 Schrenkiella parvula
TAR371G0388 Trochodendron aralioides
TAR371G1038 Trochodendron aralioides
TAR622G0528 Trochodendron aralioides
TAR622G0690 Trochodendron aralioides
TAR624G1297 Trochodendron aralioides
TAR626G0865 Trochodendron aralioides
TAR626G1901 Trochodendron aralioides
TAR627G0630 Trochodendron aralioides
TAR627G1086 Trochodendron aralioides
TAR629G0767 Trochodendron aralioides
THA.LOC104811873 Tarenaya hassleriana
THA.LOC104816749 Tarenaya hassleriana
THA.LOC104818088 Tarenaya hassleriana
THA.LOC104819471 Tarenaya hassleriana
Thecc.02G246600 Theobroma cacao
Thecc.07G095300 Theobroma cacao
Thecc.08G001600 Theobroma cacao
Thhalv10013822m.g Eutrema salsugineum
Thhalv10020987m.g Eutrema salsugineum
Thhalv10023517m.g Eutrema salsugineum
TPR.G3780 Trifolium pratense
TPR.G39821 Trifolium pratense
TPR.G4430 Trifolium pratense
TWI38G0429 Tripterygium wilfordii
TWI38G1311 Tripterygium wilfordii
TWI56G0457 Tripterygium wilfordii
TWI75G0695 Tripterygium wilfordii
unitig_0.g2265 Utricularia gibba
unitig_22.g6470 Utricularia gibba
unitig_22.g6471 Utricularia gibba
unitig_26.g10337 Utricularia gibba
unitig_26.g9337 Utricularia gibba
unitig_8.g3171 Utricularia gibba
unitig_8.g3640 Utricularia gibba
vmacro01192 Vaccinium macrocarpon
vmacro09525 Vaccinium macrocarpon
vmacro16268 Vaccinium macrocarpon
vmacro21488 Vaccinium macrocarpon
vmacro22611 Vaccinium macrocarpon
VMungo1080G0436 Vigna mungo
VMungo1127G0098 Vigna mungo
VMungo1215G0073 Vigna mungo
VMungo1309G1863 Vigna mungo
VMungo1309G2802 Vigna mungo
Zm00001eb150820 Zea mays
Zm00001eb254280 Zea mays
Zm00001eb369540 Zea mays
Zm00001eb372130 Zea mays

User provided reference genes

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