Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001446', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p28150' => 'bna', 'A04p30390' => 'bna', 'Aa31LG5G20050' => 'aar', 'Aa31LG5G22060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_240.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_241.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_306.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2241' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2255' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2682' => 'aag', 'Actinidia07719' => 'ach', 'Actinidia20858' => 'ach', 'Actinidia26656' => 'ach', 'Actinidia28915' => 'ach', 'Actinidia31323' => 'ach', 'Actinidia34800' => 'ach', 'Actinidia37216' => 'ach', 'Actinidia38876' => 'ach', 'Ah.08g219100' => 'amhyb', 'Ah.15g096910' => 'amhyb', 'AL4G33040' => 'aly', 'AL4G36980' => 'aly', 'AL5G20630' => 'aly', 'AL5G24610' => 'aly', 'Aqoxy1G01129' => 'aox', 'Aqoxy2G01710' => 'aox', 'Aqoxy2G02055' => 'aox', 'Aqoxy35s003' => 'aox', 'Aqoxy4G02978' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52ECNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EW6J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E47FLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K62C63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDI7S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PW8IDM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCL9IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8P42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFVJ5K' => 'arhy', 'AT2G36840' => 'ath', 'AT2G39570' => 'ath', 'ATR0559G170' => 'atr', 'ATR0723G066' => 'atr', 'Atru.chr12.499' => 'acertr', 'Atru.chr12.871' => 'acertr', 'Atru.chr3.3839' => 'acertr', 'Atru.chr8.1767' => 'acertr', 'AUR62001821' => 'cqu', 'AUR62009607' => 'cqu', 'AUR62026922' => 'cqu', 'AUR62042060' => 'cqu', 'BcaB05g23481' => 'bca', 'BcaB06g28956' => 'bca', 'BcaB06g29098' => 'bca', 'BcaC02g07393' => 'bca', 'BcaC02g07576' => 'bca', 'BcaC09g49724' => 'bca', 'BcaNung05999' => 'bca', 'BolC1t03304H' => 'bol', 'BolC4t28042H' => 'bol', 'BolC4t28241H' => 'bol', 'BraA04t18300Z' => 'bra', 'BraA04t18469Z' => 'bra', 'BraA05t19648Z' => 'bra', 'C01p33580' => 'bna', 'C04p65530' => 'bna', 'C04p67430' => 'bna', 'CAN.G1013.5' => 'can', 'CAN.G111.9' => 'can', 'CAN.G900.18' => 'can', 'CANSAT56G1216' => 'cansat', 'CANSAT80G1050' => 'cansat', 'CARHR131300' => 'chi', 'CARHR134440' => 'chi', 'CARHR154300' => 'chi', 'Carub.0004s1869' => 'cru', 'Carub.0004s2164' => 'cru', 'Carub.0005s1177' => 'cru', 'Ca_01338_v3' => 'car', 'Ca_07246_v3' => 'car', 'Ca_08890_v3' => 'car', 'Ca_08914_v3' => 'car', 'Ca_30641_v3' => 'car', 'CBR_g4757' => 'cbr', 'Cc01_g12510' => 'ccan', 'Cc02_g08120' => 'ccan', 'Cc02_g10810' => 'ccan', 'Cc06_g04410' => 'ccan', 'CDE04G1496' => 'cde', 'CDE07G0507' => 'cde', 'CDE08G0421' => 'cde', 'Cfa001503' => 'cfa', 'Cfa011468' => 'cfa', 'Cfa017636' => 'cfa', 'Ciclev10011863m.g' => 'ccl', 'Ciclev10028516m.g' => 'ccl', 'Ciclev10031651m.g' => 'ccl', 'Ciclev10031674m.g' => 'ccl', 'CiPaw.01G267700' => 'cil', 'CiPaw.02G182700' => 'cil', 'CiPaw.09G170500' => 'cil', 'CiPaw.13G097600' => 'cil', 'CiPaw.14G070900' => 'cil', 'ClCG05G021250' => 'cla', 'ClCG10G019990' => 'cla', 'COL.COLO4_14976' => 'col', 'COL.COLO4_26934' => 'col', 'COL.COLO4_36545' => 'col', 'COL.COLO4_36546' => 'col', 'Cpa.g.sc1.381' => 'cpa', 'Cpa.g.sc190.12' => 'cpa', 'Cpa.g.sc53.143' => 'cpa', 'Cpa.g.sc92.104' => 'cpa', 'CsaV3_3G036100' => 'csa', 'CsaV3_5G036020' => 'csa', 'CSS0000046' => 'camsi', 'CSS0021706' => 'camsi', 'CSS0025269' => 'camsi', 'CSS0026612' => 'camsi', 'CSS0033158' => 'camsi', 'CSS0036911' => 'camsi', 'CSS0037666' => 'camsi', 'CSS0039292' => 'camsi', 'DCAR_000321' => 'dca', 'DCAR_015006' => 'dca', 'DCAR_015191' => 'dca', 'Dinv31240' => 'din', 'Dinv31437' => 'din', 'Dinv32871' => 'din', 'Dinv35804' => 'din', 'Dinv36385' => 'din', 'Duzib106G1708' => 'dzi', 'Duzib114G0091' => 'dzi', 'Duzib114G0492' => 'dzi', 'Duzib128G0956' => 'dzi', 'Duzib168G0326' => 'dzi', 'Duzib170G0816' => 'dzi', 'ECA232G1816' => 'eca', 'ECA233G0169' => 'eca', 'ECA233G0628' => 'eca', 'ECA233G5045' => 'eca', 'ECA236G2343' => 'eca', 'ECA238G4227' => 'eca', 'ECA248G3498' => 'eca', 'EL10Ac7g15979' => 'bvu', 'EL10Ac7g16660' => 'bvu', 'Eucgr.A01656' => 'egr', 'Eucgr.B02387' => 'egr', 'Eucgr.G02875' => 'egr', 'Eucgr.J01053' => 'egr', 'FAN01G0167' => 'fan', 'FAN01G1708' => 'fan', 'FAN01G2390' => 'fan', 'FAN02G1496' => 'fan', 'FAN03G3478' => 'fan', 'FAN05G1514' => 'fan', 'FAN05G1827' => 'fan', 'FAN06G0428' => 'fan', 'FAN06G0816' => 'fan', 'FAN09G1279' => 'fan', 'FAN10G0715' => 'fan', 'FAN10G4120' => 'fan', 'FAN11G2055' => 'fan', 'FAN14G3893' => 'fan', 'FAN16G2077' => 'fan', 'FAN25G1939' => 'fan', 'FvH4_3g35480' => 'fve', 'FvH4_6g16600' => 'fve', 'FvH4_7g18540' => 'fve', 'FvH4_7g22000' => 'fve', 'Glyma.03G184800' => 'gma', 'Glyma.10G058600' => 'gma', 'Glyma.13G145400' => 'gma', 'Glyma.13G334400' => 'gma', 'Glyma.15G040100' => 'gma', 'Glyma.18G289000' => 'gma', 'Glyma.19G185300' => 'gma', 'Gohir.A01G213000' => 'ghi', 'Gohir.A03G039800' => 'ghi', 'Gohir.A04G071100' => 'ghi', 'Gohir.A09G145075' => 'ghi', 'Gohir.A10G201400' => 'ghi', 'Gohir.A13G019800' => 'ghi', 'Gohir.A13G228100' => 'ghi', 'Gohir.D01G201700' => 'ghi', 'Gohir.D03G128300' => 'ghi', 'Gohir.D04G109800' => 'ghi', 'Gohir.D09G141075' => 'ghi', 'Gohir.D10G209200' => 'ghi', 'Gohir.D13G020400' => 'ghi', 'Gohir.D13G233700' => 'ghi', 'Gorai.002G246400' => 'gra', 'Gorai.003G135000' => 'gra', 'Gorai.006G161800' => 'gra', 'Gorai.009G413900' => 'gra', 'Gorai.011G235300' => 'gra', 'Gorai.013G022700' => 'gra', 'Gorai.013G264500' => 'gra', 'GSVIVG01016191001' => 'vvi', 'GSVIVG01016193001' => 'vvi', 'GSVIVG01016580001' => 'vvi', 'GSVIVG01025006001' => 'vvi', 'GSVIVG01033664001' => 'vvi', 'HanXRQChr01g0027821' => 'han', 'HanXRQChr07g0201201' => 'han', 'HanXRQChr08g0220301' => 'han', 'HanXRQChr08g0220311' => 'han', 'HanXRQChr09g0248211' => 'han', 'HanXRQChr13g0400881' => 'han', 'HanXRQChr15g0496921' => 'han', 'Haze_16748' => 'cav', 'Haze_17039' => 'cav', 'Haze_20516' => 'cav', 'Haze_24054' => 'cav', 'Hma1.2p1_0145F.1_g065250' => 'hma', 'Hma1.2p1_0533F.1_g173620' => 'hma', 'Hma1.2p1_0828F.1_g225180' => 'hma', 'HPP92_006605' => 'vpl', 'HPP92_025765' => 'vpl', 'HPP92_026748' => 'vpl', 'Hund04988' => 'sun', 'Hund18926' => 'sun', 'Lalb_Chr01g0018641' => 'lal', 'Lalb_Chr02g0155601' => 'lal', 'Lalb_Chr04g0257811' => 'lal', 'Lalb_Chr19g0129401' => 'lal', 'Lalb_Chr25g0288911' => 'lal', 'Lj1g0002900' => 'lja', 'Lj1g0025366' => 'lja', 'Lj2A22T69' => 'lonja', 'Lj2C1057T17' => 'lonja', 'Lj2C119T13' => 'lonja', 'Lj3C987T3' => 'lonja', 'Lj3C988T7' => 'lonja', 'Lj3g0017993' => 'lja', 'Lj5g0006802' => 'lja', 'Lj8A86T51' => 'lonja', 'Lsat_1_v5_gn_1_51541' => 'lsa', 'Lsat_1_v5_gn_2_116501' => 'lsa', 'Lsat_1_v5_gn_5_53221' => 'lsa', 'Lsat_1_v5_gn_6_24401' => 'lsa', 'Lsat_1_v5_gn_8_16721' => 'lsa', 'Lsat_1_v5_gn_8_77941' => 'lsa', 'Lsat_1_v5_gn_9_65181' => 'lsa', 'Lsat_1_v5_gn_9_69620' => 'lsa', 'Manes.04G032500' => 'mes', 'Manes.08G011700' => 'mes', 'Manes.09G065100' => 'mes', 'Manes.10G032700' => 'mes', 'Mapoly0014s0151' => 'mpo', 'MBI14_g11675_MAGBIO' => 'mbi', 'MBI14_g40212_MAGBIO' => 'mbi', 'MBI17_g17639_MAGBIO' => 'mbi', 'MBI18_g42051_MAGBIO' => 'mbi', 'MCO08G223' => 'mco', 'MD01G1101800' => 'mdo', 'MD01G1124500' => 'mdo', 'MD04G1090700' => 'mdo', 'MD07G1168400' => 'mdo', 'MD07G1194400' => 'mdo', 'MD11G1143600' => 'mdo', 'MD12G1108700' => 'mdo', 'Medtr1g062980' => 'mtr', 'Medtr2g096640' => 'mtr', 'Medtr7g024320' => 'mtr', 'Medtr7g102330' => 'mtr', 'Medtr7g102350' => 'mtr', 'MELO3C009370.2' => 'cme', 'MELO3C012402.2' => 'cme', 'Migut.F01707' => 'egut', 'Migut.J00642' => 'egut', 'Migut.L01715' => 'egut', 'Migut.N02666' => 'egut', 'MSTRG.12641' => 'ama', 'MSTRG.26681' => 'ama', 'MSTRG.5770' => 'ama', 'MSTRG.8128' => 'ama', 'Nitab4.5_0000070g0190' => 'nta', 'Nitab4.5_0000070g0200' => 'nta', 'Nitab4.5_0000610g0040' => 'nta', 'Nitab4.5_0000610g0140' => 'nta', 'Nitab4.5_0001831g0120' => 'nta', 'Nitab4.5_0003782g0050' => 'nta', 'Nitab4.5_0004476g0030' => 'nta', 'Nitab4.5_0005019g0060' => 'nta', 'Nitab4.5_0006342g0020' => 'nta', 'Nitab4.5_0006672g0010' => 'nta', 'Nn2g10417' => 'nnu', 'Nn2g12810' => 'nnu', 'Nn2g13832' => 'nnu', 'Nn6g35254' => 'nnu', 'Oeu005032.1' => 'oeu', 'Oeu034492.1' => 'oeu', 'Oeu041485.1' => 'oeu', 'Oeu045235.2' => 'oeu', 'Os05g0113000' => 'osa', 'Os09g0570900' => 'osa', 'Peaxi162Scf00015g01614' => 'pax', 'Peaxi162Scf00145g00917' => 'pax', 'Peaxi162Scf00406g00136' => 'pax', 'Peaxi162Scf00466g00711' => 'pax', 'Peaxi162Scf00722g00420' => 'pax', 'PGR004G1572' => 'pgr', 'PGR004G2883' => 'pgr', 'PGR102G0440' => 'pgr', 'PGR142G1634' => 'pgr', 'PGSC0003DMG400003868' => 'stu', 'PGSC0003DMG400023521' => 'stu', 'PGSC0003DMG400045234' => 'stu', 'Phvul.001G180200' => 'pvu', 'Phvul.007G150800' => 'pvu', 'Phvul.008G013100' => 'pvu', 'Phvul.L003943' => 'pvu', 'Potri.001G237100' => 'ptr', 'Potri.001G442600' => 'ptr', 'Potri.008G033200' => 'ptr', 'Potri.008G052900' => 'ptr', 'Potri.010G207700' => 'ptr', 'Potri.010G228500' => 'ptr', 'Potri.011G154600' => 'ptr', 'Pp3c17_6970' => 'ppa', 'Pp3c1_25430' => 'ppa', 'Pp3c2_18030' => 'ppa', 'Pp3c5_11550' => 'ppa', 'Pp3c6_19000' => 'ppa', 'PRCOL_00006485' => 'pco', 'Prupe.2G207000' => 'ppe', 'Prupe.2G231900' => 'ppe', 'Prupe.6G081400' => 'ppe', 'Prupe.7G127300' => 'ppe', 'Psat3g182560' => 'psa', 'Psat6g074960' => 'psa', 'PSO339G1537' => 'pso', 'PSO339G2362' => 'pso', 'PSO339G3138' => 'pso', 'PSO339G3247' => 'pso', 'PSO648G0008' => 'pso', 'PSO801G0750' => 'pso', 'QL01p032945' => 'qlo', 'QL01p033003' => 'qlo', 'QL07p042843' => 'qlo', 'QL08p053857' => 'qlo', 'QL08p059081' => 'qlo', 'RcHm_v2.0_Chr1g0362321' => 'rch', 'RcHm_v2.0_Chr1g0366351' => 'rch', 'RcHm_v2.0_Chr2g0171731' => 'rch', 'RcHm_v2.0_Chr3g0470541' => 'rch', 'RcHm_v2.0_Chr4g0409571' => 'rch', 'RcHm_v2.0_Chr5g0063651' => 'rch', 'RcHm_v2.0_Chr7g0217131' => 'rch', 'Rhsim03G0089900' => 'rsi', 'Rhsim03G0132600' => 'rsi', 'Rhsim04G0142300' => 'rsi', 'Rhsim09G0147000' => 'rsi', 'Rhsim09G0164700' => 'rsi', 'Rhsim13G0085300' => 'rsi', 'Sabra08G0022000' => 'sbr', 'Sabra08G0038000' => 'sbr', 'Sabra10G0160300' => 'sbr', 'Sabra10G0177200' => 'sbr', 'Sabra11G0145000' => 'sbr', 'Sabra16G0142900' => 'sbr', 'SalBow2G1036' => 'sbo', 'SalBow3G1565' => 'sbo', 'SalBow3G3926' => 'sbo', 'SalBow5G4498' => 'sbo', 'SalBow5G4599' => 'sbo', 'SalBow6G4130' => 'sbo', 'Sc02g0001550' => 'sci', 'Sc06g0008240' => 'sci', 'Sed0005917' => 'sed', 'Sed0016686' => 'sed', 'Sed0021069' => 'sed', 'SGA_v2.0_scaffold224G42937' => 'sas', 'SGA_v2.0_scaffold75G24832' => 'sas', 'SHI05959' => 'shi', 'SHI05960' => 'shi', 'SMO118G0189' => 'smo', 'Solyc05g054620.4' => 'sly', 'Solyc09g008350.3' => 'sly', 'Sopen05g033100' => 'spe', 'Sopen09g003170' => 'spe', 'Sp4g19100' => 'spa', 'Sp4g21860' => 'spa', 'Sp5g15630' => 'spa', 'TAR362G0554' => 'tar', 'TAR369G0261' => 'tar', 'TAR369G0527' => 'tar', 'TAR369G0682' => 'tar', 'TAR623G1185' => 'tar', 'TAR633G0405' => 'tar', 'TAR633G1140' => 'tar', 'TAR636G3399' => 'tar', 'THA.LOC104807065' => 'tha', 'THA.LOC104810025' => 'tha', 'THA.LOC104810818' => 'tha', 'Thecc.05G069600' => 'tca', 'Thecc.09G325600' => 'tca', 'Thecc.10G046500' => 'tca', 'Thecc.10G086200' => 'tca', 'Thhalv10002542m.g' => 'esa', 'Thhalv10016601m.g' => 'esa', 'Thhalv10016727m.g' => 'esa', 'TPR.G15497' => 'tpr', 'TPR.G15515' => 'tpr', 'TPR.G31188' => 'tpr', 'TPR.G32808' => 'tpr', 'TPR.G34289' => 'tpr', 'TPR.G7090' => 'tpr', 'TWI15G1058' => 'twi', 'TWI38G0438' => 'twi', 'TWI74G1580' => 'twi', 'TWI75G1864' => 'twi', 'unitig_0.g2162' => 'ugi', 'unitig_26.g9237' => 'ugi', 'unitig_6.g29262' => 'ugi', 'unitig_747.g21425' => 'ugi', 'unitig_747.g21426' => 'ugi', 'unitig_8.g4115' => 'ugi', 'vmacro00555' => 'vma', 'vmacro03097' => 'vma', 'vmacro07159' => 'vma', 'vmacro07308' => 'vma', 'vmacro08786' => 'vma', 'vmacro09567' => 'vma', 'vmacro10247' => 'vma', 'VMungo0720G0671' => 'vmu', 'VMungo1080G0498' => 'vmu', 'VMungo1383G0672' => 'vmu', 'VMungo1383G2464' => 'vmu', 'VMungo1383G3135' => 'vmu', 'Zm00001eb095840' => 'zma', 'Zm00001eb266620' => 'zma', 'Zm00001eb302790' => 'zma', 'Zm00001eb307730' => 'zma', 'Zm00001eb355670' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001446', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001446' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001446', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001446' ) ), 'genes' => array( 'A04p28150' => 'bna', 'A04p30390' => 'bna', 'Aa31LG5G20050' => 'aar', 'Aa31LG5G22060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_240.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_241.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_306.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2241' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2255' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2682' => 'aag', 'Actinidia07719' => 'ach', 'Actinidia20858' => 'ach', 'Actinidia26656' => 'ach', 'Actinidia28915' => 'ach', 'Actinidia31323' => 'ach', 'Actinidia34800' => 'ach', 'Actinidia37216' => 'ach', 'Actinidia38876' => 'ach', 'Ah.08g219100' => 'amhyb', 'Ah.15g096910' => 'amhyb', 'AL4G33040' => 'aly', 'AL4G36980' => 'aly', 'AL5G20630' => 'aly', 'AL5G24610' => 'aly', 'Aqoxy1G01129' => 'aox', 'Aqoxy2G01710' => 'aox', 'Aqoxy2G02055' => 'aox', 'Aqoxy35s003' => 'aox', 'Aqoxy4G02978' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52ECNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EW6J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E47FLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K62C63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDI7S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PW8IDM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCL9IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8P42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFVJ5K' => 'arhy', 'AT2G36840' => 'ath', 'AT2G39570' => 'ath', 'ATR0559G170' => 'atr', 'ATR0723G066' => 'atr', 'Atru.chr12.499' => 'acertr', 'Atru.chr12.871' => 'acertr', 'Atru.chr3.3839' => 'acertr', 'Atru.chr8.1767' => 'acertr', 'AUR62001821' => 'cqu', 'AUR62009607' => 'cqu', 'AUR62026922' => 'cqu', 'AUR62042060' => 'cqu', 'BcaB05g23481' => 'bca', 'BcaB06g28956' => 'bca', 'BcaB06g29098' => 'bca', 'BcaC02g07393' => 'bca', 'BcaC02g07576' => 'bca', 'BcaC09g49724' => 'bca', 'BcaNung05999' => 'bca', 'BolC1t03304H' => 'bol', 'BolC4t28042H' => 'bol', 'BolC4t28241H' => 'bol', 'BraA04t18300Z' => 'bra', 'BraA04t18469Z' => 'bra', 'BraA05t19648Z' => 'bra', 'C01p33580' => 'bna', 'C04p65530' => 'bna', 'C04p67430' => 'bna', 'CAN.G1013.5' => 'can', 'CAN.G111.9' => 'can', 'CAN.G900.18' => 'can', 'CANSAT56G1216' => 'cansat', 'CANSAT80G1050' => 'cansat', 'CARHR131300' => 'chi', 'CARHR134440' => 'chi', 'CARHR154300' => 'chi', 'Carub.0004s1869' => 'cru', 'Carub.0004s2164' => 'cru', 'Carub.0005s1177' => 'cru', 'Ca_01338_v3' => 'car', 'Ca_07246_v3' => 'car', 'Ca_08890_v3' => 'car', 'Ca_08914_v3' => 'car', 'Ca_30641_v3' => 'car', 'CBR_g4757' => 'cbr', 'Cc01_g12510' => 'ccan', 'Cc02_g08120' => 'ccan', 'Cc02_g10810' => 'ccan', 'Cc06_g04410' => 'ccan', 'CDE04G1496' => 'cde', 'CDE07G0507' => 'cde', 'CDE08G0421' => 'cde', 'Cfa001503' => 'cfa', 'Cfa011468' => 'cfa', 'Cfa017636' => 'cfa', 'Ciclev10011863m.g' => 'ccl', 'Ciclev10028516m.g' => 'ccl', 'Ciclev10031651m.g' => 'ccl', 'Ciclev10031674m.g' => 'ccl', 'CiPaw.01G267700' => 'cil', 'CiPaw.02G182700' => 'cil', 'CiPaw.09G170500' => 'cil', 'CiPaw.13G097600' => 'cil', 'CiPaw.14G070900' => 'cil', 'ClCG05G021250' => 'cla', 'ClCG10G019990' => 'cla', 'COL.COLO4_14976' => 'col', 'COL.COLO4_26934' => 'col', 'COL.COLO4_36545' => 'col', 'COL.COLO4_36546' => 'col', 'Cpa.g.sc1.381' => 'cpa', 'Cpa.g.sc190.12' => 'cpa', 'Cpa.g.sc53.143' => 'cpa', 'Cpa.g.sc92.104' => 'cpa', 'CsaV3_3G036100' => 'csa', 'CsaV3_5G036020' => 'csa', 'CSS0000046' => 'camsi', 'CSS0021706' => 'camsi', 'CSS0025269' => 'camsi', 'CSS0026612' => 'camsi', 'CSS0033158' => 'camsi', 'CSS0036911' => 'camsi', 'CSS0037666' => 'camsi', 'CSS0039292' => 'camsi', 'DCAR_000321' => 'dca', 'DCAR_015006' => 'dca', 'DCAR_015191' => 'dca', 'Dinv31240' => 'din', 'Dinv31437' => 'din', 'Dinv32871' => 'din', 'Dinv35804' => 'din', 'Dinv36385' => 'din', 'Duzib106G1708' => 'dzi', 'Duzib114G0091' => 'dzi', 'Duzib114G0492' => 'dzi', 'Duzib128G0956' => 'dzi', 'Duzib168G0326' => 'dzi', 'Duzib170G0816' => 'dzi', 'ECA232G1816' => 'eca', 'ECA233G0169' => 'eca', 'ECA233G0628' => 'eca', 'ECA233G5045' => 'eca', 'ECA236G2343' => 'eca', 'ECA238G4227' => 'eca', 'ECA248G3498' => 'eca', 'EL10Ac7g15979' => 'bvu', 'EL10Ac7g16660' => 'bvu', 'Eucgr.A01656' => 'egr', 'Eucgr.B02387' => 'egr', 'Eucgr.G02875' => 'egr', 'Eucgr.J01053' => 'egr', 'FAN01G0167' => 'fan', 'FAN01G1708' => 'fan', 'FAN01G2390' => 'fan', 'FAN02G1496' => 'fan', 'FAN03G3478' => 'fan', 'FAN05G1514' => 'fan', 'FAN05G1827' => 'fan', 'FAN06G0428' => 'fan', 'FAN06G0816' => 'fan', 'FAN09G1279' => 'fan', 'FAN10G0715' => 'fan', 'FAN10G4120' => 'fan', 'FAN11G2055' => 'fan', 'FAN14G3893' => 'fan', 'FAN16G2077' => 'fan', 'FAN25G1939' => 'fan', 'FvH4_3g35480' => 'fve', 'FvH4_6g16600' => 'fve', 'FvH4_7g18540' => 'fve', 'FvH4_7g22000' => 'fve', 'Glyma.03G184800' => 'gma', 'Glyma.10G058600' => 'gma', 'Glyma.13G145400' => 'gma', 'Glyma.13G334400' => 'gma', 'Glyma.15G040100' => 'gma', 'Glyma.18G289000' => 'gma', 'Glyma.19G185300' => 'gma', 'Gohir.A01G213000' => 'ghi', 'Gohir.A03G039800' => 'ghi', 'Gohir.A04G071100' => 'ghi', 'Gohir.A09G145075' => 'ghi', 'Gohir.A10G201400' => 'ghi', 'Gohir.A13G019800' => 'ghi', 'Gohir.A13G228100' => 'ghi', 'Gohir.D01G201700' => 'ghi', 'Gohir.D03G128300' => 'ghi', 'Gohir.D04G109800' => 'ghi', 'Gohir.D09G141075' => 'ghi', 'Gohir.D10G209200' => 'ghi', 'Gohir.D13G020400' => 'ghi', 'Gohir.D13G233700' => 'ghi', 'Gorai.002G246400' => 'gra', 'Gorai.003G135000' => 'gra', 'Gorai.006G161800' => 'gra', 'Gorai.009G413900' => 'gra', 'Gorai.011G235300' => 'gra', 'Gorai.013G022700' => 'gra', 'Gorai.013G264500' => 'gra', 'GSVIVG01016191001' => 'vvi', 'GSVIVG01016193001' => 'vvi', 'GSVIVG01016580001' => 'vvi', 'GSVIVG01025006001' => 'vvi', 'GSVIVG01033664001' => 'vvi', 'HanXRQChr01g0027821' => 'han', 'HanXRQChr07g0201201' => 'han', 'HanXRQChr08g0220301' => 'han', 'HanXRQChr08g0220311' => 'han', 'HanXRQChr09g0248211' => 'han', 'HanXRQChr13g0400881' => 'han', 'HanXRQChr15g0496921' => 'han', 'Haze_16748' => 'cav', 'Haze_17039' => 'cav', 'Haze_20516' => 'cav', 'Haze_24054' => 'cav', 'Hma1.2p1_0145F.1_g065250' => 'hma', 'Hma1.2p1_0533F.1_g173620' => 'hma', 'Hma1.2p1_0828F.1_g225180' => 'hma', 'HPP92_006605' => 'vpl', 'HPP92_025765' => 'vpl', 'HPP92_026748' => 'vpl', 'Hund04988' => 'sun', 'Hund18926' => 'sun', 'Lalb_Chr01g0018641' => 'lal', 'Lalb_Chr02g0155601' => 'lal', 'Lalb_Chr04g0257811' => 'lal', 'Lalb_Chr19g0129401' => 'lal', 'Lalb_Chr25g0288911' => 'lal', 'Lj1g0002900' => 'lja', 'Lj1g0025366' => 'lja', 'Lj2A22T69' => 'lonja', 'Lj2C1057T17' => 'lonja', 'Lj2C119T13' => 'lonja', 'Lj3C987T3' => 'lonja', 'Lj3C988T7' => 'lonja', 'Lj3g0017993' => 'lja', 'Lj5g0006802' => 'lja', 'Lj8A86T51' => 'lonja', 'Lsat_1_v5_gn_1_51541' => 'lsa', 'Lsat_1_v5_gn_2_116501' => 'lsa', 'Lsat_1_v5_gn_5_53221' => 'lsa', 'Lsat_1_v5_gn_6_24401' => 'lsa', 'Lsat_1_v5_gn_8_16721' => 'lsa', 'Lsat_1_v5_gn_8_77941' => 'lsa', 'Lsat_1_v5_gn_9_65181' => 'lsa', 'Lsat_1_v5_gn_9_69620' => 'lsa', 'Manes.04G032500' => 'mes', 'Manes.08G011700' => 'mes', 'Manes.09G065100' => 'mes', 'Manes.10G032700' => 'mes', 'Mapoly0014s0151' => 'mpo', 'MBI14_g11675_MAGBIO' => 'mbi', 'MBI14_g40212_MAGBIO' => 'mbi', 'MBI17_g17639_MAGBIO' => 'mbi', 'MBI18_g42051_MAGBIO' => 'mbi', 'MCO08G223' => 'mco', 'MD01G1101800' => 'mdo', 'MD01G1124500' => 'mdo', 'MD04G1090700' => 'mdo', 'MD07G1168400' => 'mdo', 'MD07G1194400' => 'mdo', 'MD11G1143600' => 'mdo', 'MD12G1108700' => 'mdo', 'Medtr1g062980' => 'mtr', 'Medtr2g096640' => 'mtr', 'Medtr7g024320' => 'mtr', 'Medtr7g102330' => 'mtr', 'Medtr7g102350' => 'mtr', 'MELO3C009370.2' => 'cme', 'MELO3C012402.2' => 'cme', 'Migut.F01707' => 'egut', 'Migut.J00642' => 'egut', 'Migut.L01715' => 'egut', 'Migut.N02666' => 'egut', 'MSTRG.12641' => 'ama', 'MSTRG.26681' => 'ama', 'MSTRG.5770' => 'ama', 'MSTRG.8128' => 'ama', 'Nitab4.5_0000070g0190' => 'nta', 'Nitab4.5_0000070g0200' => 'nta', 'Nitab4.5_0000610g0040' => 'nta', 'Nitab4.5_0000610g0140' => 'nta', 'Nitab4.5_0001831g0120' => 'nta', 'Nitab4.5_0003782g0050' => 'nta', 'Nitab4.5_0004476g0030' => 'nta', 'Nitab4.5_0005019g0060' => 'nta', 'Nitab4.5_0006342g0020' => 'nta', 'Nitab4.5_0006672g0010' => 'nta', 'Nn2g10417' => 'nnu', 'Nn2g12810' => 'nnu', 'Nn2g13832' => 'nnu', 'Nn6g35254' => 'nnu', 'Oeu005032.1' => 'oeu', 'Oeu034492.1' => 'oeu', 'Oeu041485.1' => 'oeu', 'Oeu045235.2' => 'oeu', 'Os05g0113000' => 'osa', 'Os09g0570900' => 'osa', 'Peaxi162Scf00015g01614' => 'pax', 'Peaxi162Scf00145g00917' => 'pax', 'Peaxi162Scf00406g00136' => 'pax', 'Peaxi162Scf00466g00711' => 'pax', 'Peaxi162Scf00722g00420' => 'pax', 'PGR004G1572' => 'pgr', 'PGR004G2883' => 'pgr', 'PGR102G0440' => 'pgr', 'PGR142G1634' => 'pgr', 'PGSC0003DMG400003868' => 'stu', 'PGSC0003DMG400023521' => 'stu', 'PGSC0003DMG400045234' => 'stu', 'Phvul.001G180200' => 'pvu', 'Phvul.007G150800' => 'pvu', 'Phvul.008G013100' => 'pvu', 'Phvul.L003943' => 'pvu', 'Potri.001G237100' => 'ptr', 'Potri.001G442600' => 'ptr', 'Potri.008G033200' => 'ptr', 'Potri.008G052900' => 'ptr', 'Potri.010G207700' => 'ptr', 'Potri.010G228500' => 'ptr', 'Potri.011G154600' => 'ptr', 'Pp3c17_6970' => 'ppa', 'Pp3c1_25430' => 'ppa', 'Pp3c2_18030' => 'ppa', 'Pp3c5_11550' => 'ppa', 'Pp3c6_19000' => 'ppa', 'PRCOL_00006485' => 'pco', 'Prupe.2G207000' => 'ppe', 'Prupe.2G231900' => 'ppe', 'Prupe.6G081400' => 'ppe', 'Prupe.7G127300' => 'ppe', 'Psat3g182560' => 'psa', 'Psat6g074960' => 'psa', 'PSO339G1537' => 'pso', 'PSO339G2362' => 'pso', 'PSO339G3138' => 'pso', 'PSO339G3247' => 'pso', 'PSO648G0008' => 'pso', 'PSO801G0750' => 'pso', 'QL01p032945' => 'qlo', 'QL01p033003' => 'qlo', 'QL07p042843' => 'qlo', 'QL08p053857' => 'qlo', 'QL08p059081' => 'qlo', 'RcHm_v2.0_Chr1g0362321' => 'rch', 'RcHm_v2.0_Chr1g0366351' => 'rch', 'RcHm_v2.0_Chr2g0171731' => 'rch', 'RcHm_v2.0_Chr3g0470541' => 'rch', 'RcHm_v2.0_Chr4g0409571' => 'rch', 'RcHm_v2.0_Chr5g0063651' => 'rch', 'RcHm_v2.0_Chr7g0217131' => 'rch', 'Rhsim03G0089900' => 'rsi', 'Rhsim03G0132600' => 'rsi', 'Rhsim04G0142300' => 'rsi', 'Rhsim09G0147000' => 'rsi', 'Rhsim09G0164700' => 'rsi', 'Rhsim13G0085300' => 'rsi', 'Sabra08G0022000' => 'sbr', 'Sabra08G0038000' => 'sbr', 'Sabra10G0160300' => 'sbr', 'Sabra10G0177200' => 'sbr', 'Sabra11G0145000' => 'sbr', 'Sabra16G0142900' => 'sbr', 'SalBow2G1036' => 'sbo', 'SalBow3G1565' => 'sbo', 'SalBow3G3926' => 'sbo', 'SalBow5G4498' => 'sbo', 'SalBow5G4599' => 'sbo', 'SalBow6G4130' => 'sbo', 'Sc02g0001550' => 'sci', 'Sc06g0008240' => 'sci', 'Sed0005917' => 'sed', 'Sed0016686' => 'sed', 'Sed0021069' => 'sed', 'SGA_v2.0_scaffold224G42937' => 'sas', 'SGA_v2.0_scaffold75G24832' => 'sas', 'SHI05959' => 'shi', 'SHI05960' => 'shi', 'SMO118G0189' => 'smo', 'Solyc05g054620.4' => 'sly', 'Solyc09g008350.3' => 'sly', 'Sopen05g033100' => 'spe', 'Sopen09g003170' => 'spe', 'Sp4g19100' => 'spa', 'Sp4g21860' => 'spa', 'Sp5g15630' => 'spa', 'TAR362G0554' => 'tar', 'TAR369G0261' => 'tar', 'TAR369G0527' => 'tar', 'TAR369G0682' => 'tar', 'TAR623G1185' => 'tar', 'TAR633G0405' => 'tar', 'TAR633G1140' => 'tar', 'TAR636G3399' => 'tar', 'THA.LOC104807065' => 'tha', 'THA.LOC104810025' => 'tha', 'THA.LOC104810818' => 'tha', 'Thecc.05G069600' => 'tca', 'Thecc.09G325600' => 'tca', 'Thecc.10G046500' => 'tca', 'Thecc.10G086200' => 'tca', 'Thhalv10002542m.g' => 'esa', 'Thhalv10016601m.g' => 'esa', 'Thhalv10016727m.g' => 'esa', 'TPR.G15497' => 'tpr', 'TPR.G15515' => 'tpr', 'TPR.G31188' => 'tpr', 'TPR.G32808' => 'tpr', 'TPR.G34289' => 'tpr', 'TPR.G7090' => 'tpr', 'TWI15G1058' => 'twi', 'TWI38G0438' => 'twi', 'TWI74G1580' => 'twi', 'TWI75G1864' => 'twi', 'unitig_0.g2162' => 'ugi', 'unitig_26.g9237' => 'ugi', 'unitig_6.g29262' => 'ugi', 'unitig_747.g21425' => 'ugi', 'unitig_747.g21426' => 'ugi', 'unitig_8.g4115' => 'ugi', 'vmacro00555' => 'vma', 'vmacro03097' => 'vma', 'vmacro07159' => 'vma', 'vmacro07308' => 'vma', 'vmacro08786' => 'vma', 'vmacro09567' => 'vma', 'vmacro10247' => 'vma', 'VMungo0720G0671' => 'vmu', 'VMungo1080G0498' => 'vmu', 'VMungo1383G0672' => 'vmu', 'VMungo1383G2464' => 'vmu', 'VMungo1383G3135' => 'vmu', 'Zm00001eb095840' => 'zma', 'Zm00001eb266620' => 'zma', 'Zm00001eb302790' => 'zma', 'Zm00001eb307730' => 'zma', 'Zm00001eb355670' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001446' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001446' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001446' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001446' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001446', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p28150' => 'bna', 'A04p30390' => 'bna', 'Aa31LG5G20050' => 'aar', 'Aa31LG5G22060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_240.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_241.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_306.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2241' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2255' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2682' => 'aag', 'Actinidia07719' => 'ach', 'Actinidia20858' => 'ach', 'Actinidia26656' => 'ach', 'Actinidia28915' => 'ach', 'Actinidia31323' => 'ach', 'Actinidia34800' => 'ach', 'Actinidia37216' => 'ach', 'Actinidia38876' => 'ach', 'Ah.08g219100' => 'amhyb', 'Ah.15g096910' => 'amhyb', 'AL4G33040' => 'aly', 'AL4G36980' => 'aly', 'AL5G20630' => 'aly', 'AL5G24610' => 'aly', 'Aqoxy1G01129' => 'aox', 'Aqoxy2G01710' => 'aox', 'Aqoxy2G02055' => 'aox', 'Aqoxy35s003' => 'aox', 'Aqoxy4G02978' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52ECNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EW6J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E47FLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K62C63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDI7S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PW8IDM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCL9IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8P42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFVJ5K' => 'arhy', 'AT2G36840' => 'ath', 'AT2G39570' => 'ath', 'ATR0559G170' => 'atr', 'ATR0723G066' => 'atr', 'Atru.chr12.499' => 'acertr', 'Atru.chr12.871' => 'acertr', 'Atru.chr3.3839' => 'acertr', 'Atru.chr8.1767' => 'acertr', 'AUR62001821' => 'cqu', 'AUR62009607' => 'cqu', 'AUR62026922' => 'cqu', 'AUR62042060' => 'cqu', 'BcaB05g23481' => 'bca', 'BcaB06g28956' => 'bca', 'BcaB06g29098' => 'bca', 'BcaC02g07393' => 'bca', 'BcaC02g07576' => 'bca', 'BcaC09g49724' => 'bca', 'BcaNung05999' => 'bca', 'BolC1t03304H' => 'bol', 'BolC4t28042H' => 'bol', 'BolC4t28241H' => 'bol', 'BraA04t18300Z' => 'bra', 'BraA04t18469Z' => 'bra', 'BraA05t19648Z' => 'bra', 'C01p33580' => 'bna', 'C04p65530' => 'bna', 'C04p67430' => 'bna', 'CAN.G1013.5' => 'can', 'CAN.G111.9' => 'can', 'CAN.G900.18' => 'can', 'CANSAT56G1216' => 'cansat', 'CANSAT80G1050' => 'cansat', 'CARHR131300' => 'chi', 'CARHR134440' => 'chi', 'CARHR154300' => 'chi', 'Carub.0004s1869' => 'cru', 'Carub.0004s2164' => 'cru', 'Carub.0005s1177' => 'cru', 'Ca_01338_v3' => 'car', 'Ca_07246_v3' => 'car', 'Ca_08890_v3' => 'car', 'Ca_08914_v3' => 'car', 'Ca_30641_v3' => 'car', 'CBR_g4757' => 'cbr', 'Cc01_g12510' => 'ccan', 'Cc02_g08120' => 'ccan', 'Cc02_g10810' => 'ccan', 'Cc06_g04410' => 'ccan', 'CDE04G1496' => 'cde', 'CDE07G0507' => 'cde', 'CDE08G0421' => 'cde', 'Cfa001503' => 'cfa', 'Cfa011468' => 'cfa', 'Cfa017636' => 'cfa', 'Ciclev10011863m.g' => 'ccl', 'Ciclev10028516m.g' => 'ccl', 'Ciclev10031651m.g' => 'ccl', 'Ciclev10031674m.g' => 'ccl', 'CiPaw.01G267700' => 'cil', 'CiPaw.02G182700' => 'cil', 'CiPaw.09G170500' => 'cil', 'CiPaw.13G097600' => 'cil', 'CiPaw.14G070900' => 'cil', 'ClCG05G021250' => 'cla', 'ClCG10G019990' => 'cla', 'COL.COLO4_14976' => 'col', 'COL.COLO4_26934' => 'col', 'COL.COLO4_36545' => 'col', 'COL.COLO4_36546' => 'col', 'Cpa.g.sc1.381' => 'cpa', 'Cpa.g.sc190.12' => 'cpa', 'Cpa.g.sc53.143' => 'cpa', 'Cpa.g.sc92.104' => 'cpa', 'CsaV3_3G036100' => 'csa', 'CsaV3_5G036020' => 'csa', 'CSS0000046' => 'camsi', 'CSS0021706' => 'camsi', 'CSS0025269' => 'camsi', 'CSS0026612' => 'camsi', 'CSS0033158' => 'camsi', 'CSS0036911' => 'camsi', 'CSS0037666' => 'camsi', 'CSS0039292' => 'camsi', 'DCAR_000321' => 'dca', 'DCAR_015006' => 'dca', 'DCAR_015191' => 'dca', 'Dinv31240' => 'din', 'Dinv31437' => 'din', 'Dinv32871' => 'din', 'Dinv35804' => 'din', 'Dinv36385' => 'din', 'Duzib106G1708' => 'dzi', 'Duzib114G0091' => 'dzi', 'Duzib114G0492' => 'dzi', 'Duzib128G0956' => 'dzi', 'Duzib168G0326' => 'dzi', 'Duzib170G0816' => 'dzi', 'ECA232G1816' => 'eca', 'ECA233G0169' => 'eca', 'ECA233G0628' => 'eca', 'ECA233G5045' => 'eca', 'ECA236G2343' => 'eca', 'ECA238G4227' => 'eca', 'ECA248G3498' => 'eca', 'EL10Ac7g15979' => 'bvu', 'EL10Ac7g16660' => 'bvu', 'Eucgr.A01656' => 'egr', 'Eucgr.B02387' => 'egr', 'Eucgr.G02875' => 'egr', 'Eucgr.J01053' => 'egr', 'FAN01G0167' => 'fan', 'FAN01G1708' => 'fan', 'FAN01G2390' => 'fan', 'FAN02G1496' => 'fan', 'FAN03G3478' => 'fan', 'FAN05G1514' => 'fan', 'FAN05G1827' => 'fan', 'FAN06G0428' => 'fan', 'FAN06G0816' => 'fan', 'FAN09G1279' => 'fan', 'FAN10G0715' => 'fan', 'FAN10G4120' => 'fan', 'FAN11G2055' => 'fan', 'FAN14G3893' => 'fan', 'FAN16G2077' => 'fan', 'FAN25G1939' => 'fan', 'FvH4_3g35480' => 'fve', 'FvH4_6g16600' => 'fve', 'FvH4_7g18540' => 'fve', 'FvH4_7g22000' => 'fve', 'Glyma.03G184800' => 'gma', 'Glyma.10G058600' => 'gma', 'Glyma.13G145400' => 'gma', 'Glyma.13G334400' => 'gma', 'Glyma.15G040100' => 'gma', 'Glyma.18G289000' => 'gma', 'Glyma.19G185300' => 'gma', 'Gohir.A01G213000' => 'ghi', 'Gohir.A03G039800' => 'ghi', 'Gohir.A04G071100' => 'ghi', 'Gohir.A09G145075' => 'ghi', 'Gohir.A10G201400' => 'ghi', 'Gohir.A13G019800' => 'ghi', 'Gohir.A13G228100' => 'ghi', 'Gohir.D01G201700' => 'ghi', 'Gohir.D03G128300' => 'ghi', 'Gohir.D04G109800' => 'ghi', 'Gohir.D09G141075' => 'ghi', 'Gohir.D10G209200' => 'ghi', 'Gohir.D13G020400' => 'ghi', 'Gohir.D13G233700' => 'ghi', 'Gorai.002G246400' => 'gra', 'Gorai.003G135000' => 'gra', 'Gorai.006G161800' => 'gra', 'Gorai.009G413900' => 'gra', 'Gorai.011G235300' => 'gra', 'Gorai.013G022700' => 'gra', 'Gorai.013G264500' => 'gra', 'GSVIVG01016191001' => 'vvi', 'GSVIVG01016193001' => 'vvi', 'GSVIVG01016580001' => 'vvi', 'GSVIVG01025006001' => 'vvi', 'GSVIVG01033664001' => 'vvi', 'HanXRQChr01g0027821' => 'han', 'HanXRQChr07g0201201' => 'han', 'HanXRQChr08g0220301' => 'han', 'HanXRQChr08g0220311' => 'han', 'HanXRQChr09g0248211' => 'han', 'HanXRQChr13g0400881' => 'han', 'HanXRQChr15g0496921' => 'han', 'Haze_16748' => 'cav', 'Haze_17039' => 'cav', 'Haze_20516' => 'cav', 'Haze_24054' => 'cav', 'Hma1.2p1_0145F.1_g065250' => 'hma', 'Hma1.2p1_0533F.1_g173620' => 'hma', 'Hma1.2p1_0828F.1_g225180' => 'hma', 'HPP92_006605' => 'vpl', 'HPP92_025765' => 'vpl', 'HPP92_026748' => 'vpl', 'Hund04988' => 'sun', 'Hund18926' => 'sun', 'Lalb_Chr01g0018641' => 'lal', 'Lalb_Chr02g0155601' => 'lal', 'Lalb_Chr04g0257811' => 'lal', 'Lalb_Chr19g0129401' => 'lal', 'Lalb_Chr25g0288911' => 'lal', 'Lj1g0002900' => 'lja', 'Lj1g0025366' => 'lja', 'Lj2A22T69' => 'lonja', 'Lj2C1057T17' => 'lonja', 'Lj2C119T13' => 'lonja', 'Lj3C987T3' => 'lonja', 'Lj3C988T7' => 'lonja', 'Lj3g0017993' => 'lja', 'Lj5g0006802' => 'lja', 'Lj8A86T51' => 'lonja', 'Lsat_1_v5_gn_1_51541' => 'lsa', 'Lsat_1_v5_gn_2_116501' => 'lsa', 'Lsat_1_v5_gn_5_53221' => 'lsa', 'Lsat_1_v5_gn_6_24401' => 'lsa', 'Lsat_1_v5_gn_8_16721' => 'lsa', 'Lsat_1_v5_gn_8_77941' => 'lsa', 'Lsat_1_v5_gn_9_65181' => 'lsa', 'Lsat_1_v5_gn_9_69620' => 'lsa', 'Manes.04G032500' => 'mes', 'Manes.08G011700' => 'mes', 'Manes.09G065100' => 'mes', 'Manes.10G032700' => 'mes', 'Mapoly0014s0151' => 'mpo', 'MBI14_g11675_MAGBIO' => 'mbi', 'MBI14_g40212_MAGBIO' => 'mbi', 'MBI17_g17639_MAGBIO' => 'mbi', 'MBI18_g42051_MAGBIO' => 'mbi', 'MCO08G223' => 'mco', 'MD01G1101800' => 'mdo', 'MD01G1124500' => 'mdo', 'MD04G1090700' => 'mdo', 'MD07G1168400' => 'mdo', 'MD07G1194400' => 'mdo', 'MD11G1143600' => 'mdo', 'MD12G1108700' => 'mdo', 'Medtr1g062980' => 'mtr', 'Medtr2g096640' => 'mtr', 'Medtr7g024320' => 'mtr', 'Medtr7g102330' => 'mtr', 'Medtr7g102350' => 'mtr', 'MELO3C009370.2' => 'cme', 'MELO3C012402.2' => 'cme', 'Migut.F01707' => 'egut', 'Migut.J00642' => 'egut', 'Migut.L01715' => 'egut', 'Migut.N02666' => 'egut', 'MSTRG.12641' => 'ama', 'MSTRG.26681' => 'ama', 'MSTRG.5770' => 'ama', 'MSTRG.8128' => 'ama', 'Nitab4.5_0000070g0190' => 'nta', 'Nitab4.5_0000070g0200' => 'nta', 'Nitab4.5_0000610g0040' => 'nta', 'Nitab4.5_0000610g0140' => 'nta', 'Nitab4.5_0001831g0120' => 'nta', 'Nitab4.5_0003782g0050' => 'nta', 'Nitab4.5_0004476g0030' => 'nta', 'Nitab4.5_0005019g0060' => 'nta', 'Nitab4.5_0006342g0020' => 'nta', 'Nitab4.5_0006672g0010' => 'nta', 'Nn2g10417' => 'nnu', 'Nn2g12810' => 'nnu', 'Nn2g13832' => 'nnu', 'Nn6g35254' => 'nnu', 'Oeu005032.1' => 'oeu', 'Oeu034492.1' => 'oeu', 'Oeu041485.1' => 'oeu', 'Oeu045235.2' => 'oeu', 'Os05g0113000' => 'osa', 'Os09g0570900' => 'osa', 'Peaxi162Scf00015g01614' => 'pax', 'Peaxi162Scf00145g00917' => 'pax', 'Peaxi162Scf00406g00136' => 'pax', 'Peaxi162Scf00466g00711' => 'pax', 'Peaxi162Scf00722g00420' => 'pax', 'PGR004G1572' => 'pgr', 'PGR004G2883' => 'pgr', 'PGR102G0440' => 'pgr', 'PGR142G1634' => 'pgr', 'PGSC0003DMG400003868' => 'stu', 'PGSC0003DMG400023521' => 'stu', 'PGSC0003DMG400045234' => 'stu', 'Phvul.001G180200' => 'pvu', 'Phvul.007G150800' => 'pvu', 'Phvul.008G013100' => 'pvu', 'Phvul.L003943' => 'pvu', 'Potri.001G237100' => 'ptr', 'Potri.001G442600' => 'ptr', 'Potri.008G033200' => 'ptr', 'Potri.008G052900' => 'ptr', 'Potri.010G207700' => 'ptr', 'Potri.010G228500' => 'ptr', 'Potri.011G154600' => 'ptr', 'Pp3c17_6970' => 'ppa', 'Pp3c1_25430' => 'ppa', 'Pp3c2_18030' => 'ppa', 'Pp3c5_11550' => 'ppa', 'Pp3c6_19000' => 'ppa', 'PRCOL_00006485' => 'pco', 'Prupe.2G207000' => 'ppe', 'Prupe.2G231900' => 'ppe', 'Prupe.6G081400' => 'ppe', 'Prupe.7G127300' => 'ppe', 'Psat3g182560' => 'psa', 'Psat6g074960' => 'psa', 'PSO339G1537' => 'pso', 'PSO339G2362' => 'pso', 'PSO339G3138' => 'pso', 'PSO339G3247' => 'pso', 'PSO648G0008' => 'pso', 'PSO801G0750' => 'pso', 'QL01p032945' => 'qlo', 'QL01p033003' => 'qlo', 'QL07p042843' => 'qlo', 'QL08p053857' => 'qlo', 'QL08p059081' => 'qlo', 'RcHm_v2.0_Chr1g0362321' => 'rch', 'RcHm_v2.0_Chr1g0366351' => 'rch', 'RcHm_v2.0_Chr2g0171731' => 'rch', 'RcHm_v2.0_Chr3g0470541' => 'rch', 'RcHm_v2.0_Chr4g0409571' => 'rch', 'RcHm_v2.0_Chr5g0063651' => 'rch', 'RcHm_v2.0_Chr7g0217131' => 'rch', 'Rhsim03G0089900' => 'rsi', 'Rhsim03G0132600' => 'rsi', 'Rhsim04G0142300' => 'rsi', 'Rhsim09G0147000' => 'rsi', 'Rhsim09G0164700' => 'rsi', 'Rhsim13G0085300' => 'rsi', 'Sabra08G0022000' => 'sbr', 'Sabra08G0038000' => 'sbr', 'Sabra10G0160300' => 'sbr', 'Sabra10G0177200' => 'sbr', 'Sabra11G0145000' => 'sbr', 'Sabra16G0142900' => 'sbr', 'SalBow2G1036' => 'sbo', 'SalBow3G1565' => 'sbo', 'SalBow3G3926' => 'sbo', 'SalBow5G4498' => 'sbo', 'SalBow5G4599' => 'sbo', 'SalBow6G4130' => 'sbo', 'Sc02g0001550' => 'sci', 'Sc06g0008240' => 'sci', 'Sed0005917' => 'sed', 'Sed0016686' => 'sed', 'Sed0021069' => 'sed', 'SGA_v2.0_scaffold224G42937' => 'sas', 'SGA_v2.0_scaffold75G24832' => 'sas', 'SHI05959' => 'shi', 'SHI05960' => 'shi', 'SMO118G0189' => 'smo', 'Solyc05g054620.4' => 'sly', 'Solyc09g008350.3' => 'sly', 'Sopen05g033100' => 'spe', 'Sopen09g003170' => 'spe', 'Sp4g19100' => 'spa', 'Sp4g21860' => 'spa', 'Sp5g15630' => 'spa', 'TAR362G0554' => 'tar', 'TAR369G0261' => 'tar', 'TAR369G0527' => 'tar', 'TAR369G0682' => 'tar', 'TAR623G1185' => 'tar', 'TAR633G0405' => 'tar', 'TAR633G1140' => 'tar', 'TAR636G3399' => 'tar', 'THA.LOC104807065' => 'tha', 'THA.LOC104810025' => 'tha', 'THA.LOC104810818' => 'tha', 'Thecc.05G069600' => 'tca', 'Thecc.09G325600' => 'tca', 'Thecc.10G046500' => 'tca', 'Thecc.10G086200' => 'tca', 'Thhalv10002542m.g' => 'esa', 'Thhalv10016601m.g' => 'esa', 'Thhalv10016727m.g' => 'esa', 'TPR.G15497' => 'tpr', 'TPR.G15515' => 'tpr', 'TPR.G31188' => 'tpr', 'TPR.G32808' => 'tpr', 'TPR.G34289' => 'tpr', 'TPR.G7090' => 'tpr', 'TWI15G1058' => 'twi', 'TWI38G0438' => 'twi', 'TWI74G1580' => 'twi', 'TWI75G1864' => 'twi', 'unitig_0.g2162' => 'ugi', 'unitig_26.g9237' => 'ugi', 'unitig_6.g29262' => 'ugi', 'unitig_747.g21425' => 'ugi', 'unitig_747.g21426' => 'ugi', 'unitig_8.g4115' => 'ugi', 'vmacro00555' => 'vma', 'vmacro03097' => 'vma', 'vmacro07159' => 'vma', 'vmacro07308' => 'vma', 'vmacro08786' => 'vma', 'vmacro09567' => 'vma', 'vmacro10247' => 'vma', 'VMungo0720G0671' => 'vmu', 'VMungo1080G0498' => 'vmu', 'VMungo1383G0672' => 'vmu', 'VMungo1383G2464' => 'vmu', 'VMungo1383G3135' => 'vmu', 'Zm00001eb095840' => 'zma', 'Zm00001eb266620' => 'zma', 'Zm00001eb302790' => 'zma', 'Zm00001eb307730' => 'zma', 'Zm00001eb355670' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001446', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001446' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001446', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001446' ) ), 'genes' => array( 'A04p28150' => 'bna', 'A04p30390' => 'bna', 'Aa31LG5G20050' => 'aar', 'Aa31LG5G22060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_240.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_241.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_306.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2241' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2255' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2682' => 'aag', 'Actinidia07719' => 'ach', 'Actinidia20858' => 'ach', 'Actinidia26656' => 'ach', 'Actinidia28915' => 'ach', 'Actinidia31323' => 'ach', 'Actinidia34800' => 'ach', 'Actinidia37216' => 'ach', 'Actinidia38876' => 'ach', 'Ah.08g219100' => 'amhyb', 'Ah.15g096910' => 'amhyb', 'AL4G33040' => 'aly', 'AL4G36980' => 'aly', 'AL5G20630' => 'aly', 'AL5G24610' => 'aly', 'Aqoxy1G01129' => 'aox', 'Aqoxy2G01710' => 'aox', 'Aqoxy2G02055' => 'aox', 'Aqoxy35s003' => 'aox', 'Aqoxy4G02978' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52ECNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EW6J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E47FLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K62C63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDI7S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PW8IDM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCL9IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8P42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFVJ5K' => 'arhy', 'AT2G36840' => 'ath', 'AT2G39570' => 'ath', 'ATR0559G170' => 'atr', 'ATR0723G066' => 'atr', 'Atru.chr12.499' => 'acertr', 'Atru.chr12.871' => 'acertr', 'Atru.chr3.3839' => 'acertr', 'Atru.chr8.1767' => 'acertr', 'AUR62001821' => 'cqu', 'AUR62009607' => 'cqu', 'AUR62026922' => 'cqu', 'AUR62042060' => 'cqu', 'BcaB05g23481' => 'bca', 'BcaB06g28956' => 'bca', 'BcaB06g29098' => 'bca', 'BcaC02g07393' => 'bca', 'BcaC02g07576' => 'bca', 'BcaC09g49724' => 'bca', 'BcaNung05999' => 'bca', 'BolC1t03304H' => 'bol', 'BolC4t28042H' => 'bol', 'BolC4t28241H' => 'bol', 'BraA04t18300Z' => 'bra', 'BraA04t18469Z' => 'bra', 'BraA05t19648Z' => 'bra', 'C01p33580' => 'bna', 'C04p65530' => 'bna', 'C04p67430' => 'bna', 'CAN.G1013.5' => 'can', 'CAN.G111.9' => 'can', 'CAN.G900.18' => 'can', 'CANSAT56G1216' => 'cansat', 'CANSAT80G1050' => 'cansat', 'CARHR131300' => 'chi', 'CARHR134440' => 'chi', 'CARHR154300' => 'chi', 'Carub.0004s1869' => 'cru', 'Carub.0004s2164' => 'cru', 'Carub.0005s1177' => 'cru', 'Ca_01338_v3' => 'car', 'Ca_07246_v3' => 'car', 'Ca_08890_v3' => 'car', 'Ca_08914_v3' => 'car', 'Ca_30641_v3' => 'car', 'CBR_g4757' => 'cbr', 'Cc01_g12510' => 'ccan', 'Cc02_g08120' => 'ccan', 'Cc02_g10810' => 'ccan', 'Cc06_g04410' => 'ccan', 'CDE04G1496' => 'cde', 'CDE07G0507' => 'cde', 'CDE08G0421' => 'cde', 'Cfa001503' => 'cfa', 'Cfa011468' => 'cfa', 'Cfa017636' => 'cfa', 'Ciclev10011863m.g' => 'ccl', 'Ciclev10028516m.g' => 'ccl', 'Ciclev10031651m.g' => 'ccl', 'Ciclev10031674m.g' => 'ccl', 'CiPaw.01G267700' => 'cil', 'CiPaw.02G182700' => 'cil', 'CiPaw.09G170500' => 'cil', 'CiPaw.13G097600' => 'cil', 'CiPaw.14G070900' => 'cil', 'ClCG05G021250' => 'cla', 'ClCG10G019990' => 'cla', 'COL.COLO4_14976' => 'col', 'COL.COLO4_26934' => 'col', 'COL.COLO4_36545' => 'col', 'COL.COLO4_36546' => 'col', 'Cpa.g.sc1.381' => 'cpa', 'Cpa.g.sc190.12' => 'cpa', 'Cpa.g.sc53.143' => 'cpa', 'Cpa.g.sc92.104' => 'cpa', 'CsaV3_3G036100' => 'csa', 'CsaV3_5G036020' => 'csa', 'CSS0000046' => 'camsi', 'CSS0021706' => 'camsi', 'CSS0025269' => 'camsi', 'CSS0026612' => 'camsi', 'CSS0033158' => 'camsi', 'CSS0036911' => 'camsi', 'CSS0037666' => 'camsi', 'CSS0039292' => 'camsi', 'DCAR_000321' => 'dca', 'DCAR_015006' => 'dca', 'DCAR_015191' => 'dca', 'Dinv31240' => 'din', 'Dinv31437' => 'din', 'Dinv32871' => 'din', 'Dinv35804' => 'din', 'Dinv36385' => 'din', 'Duzib106G1708' => 'dzi', 'Duzib114G0091' => 'dzi', 'Duzib114G0492' => 'dzi', 'Duzib128G0956' => 'dzi', 'Duzib168G0326' => 'dzi', 'Duzib170G0816' => 'dzi', 'ECA232G1816' => 'eca', 'ECA233G0169' => 'eca', 'ECA233G0628' => 'eca', 'ECA233G5045' => 'eca', 'ECA236G2343' => 'eca', 'ECA238G4227' => 'eca', 'ECA248G3498' => 'eca', 'EL10Ac7g15979' => 'bvu', 'EL10Ac7g16660' => 'bvu', 'Eucgr.A01656' => 'egr', 'Eucgr.B02387' => 'egr', 'Eucgr.G02875' => 'egr', 'Eucgr.J01053' => 'egr', 'FAN01G0167' => 'fan', 'FAN01G1708' => 'fan', 'FAN01G2390' => 'fan', 'FAN02G1496' => 'fan', 'FAN03G3478' => 'fan', 'FAN05G1514' => 'fan', 'FAN05G1827' => 'fan', 'FAN06G0428' => 'fan', 'FAN06G0816' => 'fan', 'FAN09G1279' => 'fan', 'FAN10G0715' => 'fan', 'FAN10G4120' => 'fan', 'FAN11G2055' => 'fan', 'FAN14G3893' => 'fan', 'FAN16G2077' => 'fan', 'FAN25G1939' => 'fan', 'FvH4_3g35480' => 'fve', 'FvH4_6g16600' => 'fve', 'FvH4_7g18540' => 'fve', 'FvH4_7g22000' => 'fve', 'Glyma.03G184800' => 'gma', 'Glyma.10G058600' => 'gma', 'Glyma.13G145400' => 'gma', 'Glyma.13G334400' => 'gma', 'Glyma.15G040100' => 'gma', 'Glyma.18G289000' => 'gma', 'Glyma.19G185300' => 'gma', 'Gohir.A01G213000' => 'ghi', 'Gohir.A03G039800' => 'ghi', 'Gohir.A04G071100' => 'ghi', 'Gohir.A09G145075' => 'ghi', 'Gohir.A10G201400' => 'ghi', 'Gohir.A13G019800' => 'ghi', 'Gohir.A13G228100' => 'ghi', 'Gohir.D01G201700' => 'ghi', 'Gohir.D03G128300' => 'ghi', 'Gohir.D04G109800' => 'ghi', 'Gohir.D09G141075' => 'ghi', 'Gohir.D10G209200' => 'ghi', 'Gohir.D13G020400' => 'ghi', 'Gohir.D13G233700' => 'ghi', 'Gorai.002G246400' => 'gra', 'Gorai.003G135000' => 'gra', 'Gorai.006G161800' => 'gra', 'Gorai.009G413900' => 'gra', 'Gorai.011G235300' => 'gra', 'Gorai.013G022700' => 'gra', 'Gorai.013G264500' => 'gra', 'GSVIVG01016191001' => 'vvi', 'GSVIVG01016193001' => 'vvi', 'GSVIVG01016580001' => 'vvi', 'GSVIVG01025006001' => 'vvi', 'GSVIVG01033664001' => 'vvi', 'HanXRQChr01g0027821' => 'han', 'HanXRQChr07g0201201' => 'han', 'HanXRQChr08g0220301' => 'han', 'HanXRQChr08g0220311' => 'han', 'HanXRQChr09g0248211' => 'han', 'HanXRQChr13g0400881' => 'han', 'HanXRQChr15g0496921' => 'han', 'Haze_16748' => 'cav', 'Haze_17039' => 'cav', 'Haze_20516' => 'cav', 'Haze_24054' => 'cav', 'Hma1.2p1_0145F.1_g065250' => 'hma', 'Hma1.2p1_0533F.1_g173620' => 'hma', 'Hma1.2p1_0828F.1_g225180' => 'hma', 'HPP92_006605' => 'vpl', 'HPP92_025765' => 'vpl', 'HPP92_026748' => 'vpl', 'Hund04988' => 'sun', 'Hund18926' => 'sun', 'Lalb_Chr01g0018641' => 'lal', 'Lalb_Chr02g0155601' => 'lal', 'Lalb_Chr04g0257811' => 'lal', 'Lalb_Chr19g0129401' => 'lal', 'Lalb_Chr25g0288911' => 'lal', 'Lj1g0002900' => 'lja', 'Lj1g0025366' => 'lja', 'Lj2A22T69' => 'lonja', 'Lj2C1057T17' => 'lonja', 'Lj2C119T13' => 'lonja', 'Lj3C987T3' => 'lonja', 'Lj3C988T7' => 'lonja', 'Lj3g0017993' => 'lja', 'Lj5g0006802' => 'lja', 'Lj8A86T51' => 'lonja', 'Lsat_1_v5_gn_1_51541' => 'lsa', 'Lsat_1_v5_gn_2_116501' => 'lsa', 'Lsat_1_v5_gn_5_53221' => 'lsa', 'Lsat_1_v5_gn_6_24401' => 'lsa', 'Lsat_1_v5_gn_8_16721' => 'lsa', 'Lsat_1_v5_gn_8_77941' => 'lsa', 'Lsat_1_v5_gn_9_65181' => 'lsa', 'Lsat_1_v5_gn_9_69620' => 'lsa', 'Manes.04G032500' => 'mes', 'Manes.08G011700' => 'mes', 'Manes.09G065100' => 'mes', 'Manes.10G032700' => 'mes', 'Mapoly0014s0151' => 'mpo', 'MBI14_g11675_MAGBIO' => 'mbi', 'MBI14_g40212_MAGBIO' => 'mbi', 'MBI17_g17639_MAGBIO' => 'mbi', 'MBI18_g42051_MAGBIO' => 'mbi', 'MCO08G223' => 'mco', 'MD01G1101800' => 'mdo', 'MD01G1124500' => 'mdo', 'MD04G1090700' => 'mdo', 'MD07G1168400' => 'mdo', 'MD07G1194400' => 'mdo', 'MD11G1143600' => 'mdo', 'MD12G1108700' => 'mdo', 'Medtr1g062980' => 'mtr', 'Medtr2g096640' => 'mtr', 'Medtr7g024320' => 'mtr', 'Medtr7g102330' => 'mtr', 'Medtr7g102350' => 'mtr', 'MELO3C009370.2' => 'cme', 'MELO3C012402.2' => 'cme', 'Migut.F01707' => 'egut', 'Migut.J00642' => 'egut', 'Migut.L01715' => 'egut', 'Migut.N02666' => 'egut', 'MSTRG.12641' => 'ama', 'MSTRG.26681' => 'ama', 'MSTRG.5770' => 'ama', 'MSTRG.8128' => 'ama', 'Nitab4.5_0000070g0190' => 'nta', 'Nitab4.5_0000070g0200' => 'nta', 'Nitab4.5_0000610g0040' => 'nta', 'Nitab4.5_0000610g0140' => 'nta', 'Nitab4.5_0001831g0120' => 'nta', 'Nitab4.5_0003782g0050' => 'nta', 'Nitab4.5_0004476g0030' => 'nta', 'Nitab4.5_0005019g0060' => 'nta', 'Nitab4.5_0006342g0020' => 'nta', 'Nitab4.5_0006672g0010' => 'nta', 'Nn2g10417' => 'nnu', 'Nn2g12810' => 'nnu', 'Nn2g13832' => 'nnu', 'Nn6g35254' => 'nnu', 'Oeu005032.1' => 'oeu', 'Oeu034492.1' => 'oeu', 'Oeu041485.1' => 'oeu', 'Oeu045235.2' => 'oeu', 'Os05g0113000' => 'osa', 'Os09g0570900' => 'osa', 'Peaxi162Scf00015g01614' => 'pax', 'Peaxi162Scf00145g00917' => 'pax', 'Peaxi162Scf00406g00136' => 'pax', 'Peaxi162Scf00466g00711' => 'pax', 'Peaxi162Scf00722g00420' => 'pax', 'PGR004G1572' => 'pgr', 'PGR004G2883' => 'pgr', 'PGR102G0440' => 'pgr', 'PGR142G1634' => 'pgr', 'PGSC0003DMG400003868' => 'stu', 'PGSC0003DMG400023521' => 'stu', 'PGSC0003DMG400045234' => 'stu', 'Phvul.001G180200' => 'pvu', 'Phvul.007G150800' => 'pvu', 'Phvul.008G013100' => 'pvu', 'Phvul.L003943' => 'pvu', 'Potri.001G237100' => 'ptr', 'Potri.001G442600' => 'ptr', 'Potri.008G033200' => 'ptr', 'Potri.008G052900' => 'ptr', 'Potri.010G207700' => 'ptr', 'Potri.010G228500' => 'ptr', 'Potri.011G154600' => 'ptr', 'Pp3c17_6970' => 'ppa', 'Pp3c1_25430' => 'ppa', 'Pp3c2_18030' => 'ppa', 'Pp3c5_11550' => 'ppa', 'Pp3c6_19000' => 'ppa', 'PRCOL_00006485' => 'pco', 'Prupe.2G207000' => 'ppe', 'Prupe.2G231900' => 'ppe', 'Prupe.6G081400' => 'ppe', 'Prupe.7G127300' => 'ppe', 'Psat3g182560' => 'psa', 'Psat6g074960' => 'psa', 'PSO339G1537' => 'pso', 'PSO339G2362' => 'pso', 'PSO339G3138' => 'pso', 'PSO339G3247' => 'pso', 'PSO648G0008' => 'pso', 'PSO801G0750' => 'pso', 'QL01p032945' => 'qlo', 'QL01p033003' => 'qlo', 'QL07p042843' => 'qlo', 'QL08p053857' => 'qlo', 'QL08p059081' => 'qlo', 'RcHm_v2.0_Chr1g0362321' => 'rch', 'RcHm_v2.0_Chr1g0366351' => 'rch', 'RcHm_v2.0_Chr2g0171731' => 'rch', 'RcHm_v2.0_Chr3g0470541' => 'rch', 'RcHm_v2.0_Chr4g0409571' => 'rch', 'RcHm_v2.0_Chr5g0063651' => 'rch', 'RcHm_v2.0_Chr7g0217131' => 'rch', 'Rhsim03G0089900' => 'rsi', 'Rhsim03G0132600' => 'rsi', 'Rhsim04G0142300' => 'rsi', 'Rhsim09G0147000' => 'rsi', 'Rhsim09G0164700' => 'rsi', 'Rhsim13G0085300' => 'rsi', 'Sabra08G0022000' => 'sbr', 'Sabra08G0038000' => 'sbr', 'Sabra10G0160300' => 'sbr', 'Sabra10G0177200' => 'sbr', 'Sabra11G0145000' => 'sbr', 'Sabra16G0142900' => 'sbr', 'SalBow2G1036' => 'sbo', 'SalBow3G1565' => 'sbo', 'SalBow3G3926' => 'sbo', 'SalBow5G4498' => 'sbo', 'SalBow5G4599' => 'sbo', 'SalBow6G4130' => 'sbo', 'Sc02g0001550' => 'sci', 'Sc06g0008240' => 'sci', 'Sed0005917' => 'sed', 'Sed0016686' => 'sed', 'Sed0021069' => 'sed', 'SGA_v2.0_scaffold224G42937' => 'sas', 'SGA_v2.0_scaffold75G24832' => 'sas', 'SHI05959' => 'shi', 'SHI05960' => 'shi', 'SMO118G0189' => 'smo', 'Solyc05g054620.4' => 'sly', 'Solyc09g008350.3' => 'sly', 'Sopen05g033100' => 'spe', 'Sopen09g003170' => 'spe', 'Sp4g19100' => 'spa', 'Sp4g21860' => 'spa', 'Sp5g15630' => 'spa', 'TAR362G0554' => 'tar', 'TAR369G0261' => 'tar', 'TAR369G0527' => 'tar', 'TAR369G0682' => 'tar', 'TAR623G1185' => 'tar', 'TAR633G0405' => 'tar', 'TAR633G1140' => 'tar', 'TAR636G3399' => 'tar', 'THA.LOC104807065' => 'tha', 'THA.LOC104810025' => 'tha', 'THA.LOC104810818' => 'tha', 'Thecc.05G069600' => 'tca', 'Thecc.09G325600' => 'tca', 'Thecc.10G046500' => 'tca', 'Thecc.10G086200' => 'tca', 'Thhalv10002542m.g' => 'esa', 'Thhalv10016601m.g' => 'esa', 'Thhalv10016727m.g' => 'esa', 'TPR.G15497' => 'tpr', 'TPR.G15515' => 'tpr', 'TPR.G31188' => 'tpr', 'TPR.G32808' => 'tpr', 'TPR.G34289' => 'tpr', 'TPR.G7090' => 'tpr', 'TWI15G1058' => 'twi', 'TWI38G0438' => 'twi', 'TWI74G1580' => 'twi', 'TWI75G1864' => 'twi', 'unitig_0.g2162' => 'ugi', 'unitig_26.g9237' => 'ugi', 'unitig_6.g29262' => 'ugi', 'unitig_747.g21425' => 'ugi', 'unitig_747.g21426' => 'ugi', 'unitig_8.g4115' => 'ugi', 'vmacro00555' => 'vma', 'vmacro03097' => 'vma', 'vmacro07159' => 'vma', 'vmacro07308' => 'vma', 'vmacro08786' => 'vma', 'vmacro09567' => 'vma', 'vmacro10247' => 'vma', 'VMungo0720G0671' => 'vmu', 'VMungo1080G0498' => 'vmu', 'VMungo1383G0672' => 'vmu', 'VMungo1383G2464' => 'vmu', 'VMungo1383G3135' => 'vmu', 'Zm00001eb095840' => 'zma', 'Zm00001eb266620' => 'zma', 'Zm00001eb302790' => 'zma', 'Zm00001eb307730' => 'zma', 'Zm00001eb355670' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001446' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001446' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001446' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001446' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001446', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p28150' => 'bna', 'A04p30390' => 'bna', 'Aa31LG5G20050' => 'aar', 'Aa31LG5G22060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_240.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_241.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_306.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2241' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2255' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2682' => 'aag', 'Actinidia07719' => 'ach', 'Actinidia20858' => 'ach', 'Actinidia26656' => 'ach', 'Actinidia28915' => 'ach', 'Actinidia31323' => 'ach', 'Actinidia34800' => 'ach', 'Actinidia37216' => 'ach', 'Actinidia38876' => 'ach', 'Ah.08g219100' => 'amhyb', 'Ah.15g096910' => 'amhyb', 'AL4G33040' => 'aly', 'AL4G36980' => 'aly', 'AL5G20630' => 'aly', 'AL5G24610' => 'aly', 'Aqoxy1G01129' => 'aox', 'Aqoxy2G01710' => 'aox', 'Aqoxy2G02055' => 'aox', 'Aqoxy35s003' => 'aox', 'Aqoxy4G02978' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52ECNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EW6J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E47FLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K62C63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDI7S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PW8IDM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCL9IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8P42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFVJ5K' => 'arhy', 'AT2G36840' => 'ath', 'AT2G39570' => 'ath', 'ATR0559G170' => 'atr', 'ATR0723G066' => 'atr', 'Atru.chr12.499' => 'acertr', 'Atru.chr12.871' => 'acertr', 'Atru.chr3.3839' => 'acertr', 'Atru.chr8.1767' => 'acertr', 'AUR62001821' => 'cqu', 'AUR62009607' => 'cqu', 'AUR62026922' => 'cqu', 'AUR62042060' => 'cqu', 'BcaB05g23481' => 'bca', 'BcaB06g28956' => 'bca', 'BcaB06g29098' => 'bca', 'BcaC02g07393' => 'bca', 'BcaC02g07576' => 'bca', 'BcaC09g49724' => 'bca', 'BcaNung05999' => 'bca', 'BolC1t03304H' => 'bol', 'BolC4t28042H' => 'bol', 'BolC4t28241H' => 'bol', 'BraA04t18300Z' => 'bra', 'BraA04t18469Z' => 'bra', 'BraA05t19648Z' => 'bra', 'C01p33580' => 'bna', 'C04p65530' => 'bna', 'C04p67430' => 'bna', 'CAN.G1013.5' => 'can', 'CAN.G111.9' => 'can', 'CAN.G900.18' => 'can', 'CANSAT56G1216' => 'cansat', 'CANSAT80G1050' => 'cansat', 'CARHR131300' => 'chi', 'CARHR134440' => 'chi', 'CARHR154300' => 'chi', 'Carub.0004s1869' => 'cru', 'Carub.0004s2164' => 'cru', 'Carub.0005s1177' => 'cru', 'Ca_01338_v3' => 'car', 'Ca_07246_v3' => 'car', 'Ca_08890_v3' => 'car', 'Ca_08914_v3' => 'car', 'Ca_30641_v3' => 'car', 'CBR_g4757' => 'cbr', 'Cc01_g12510' => 'ccan', 'Cc02_g08120' => 'ccan', 'Cc02_g10810' => 'ccan', 'Cc06_g04410' => 'ccan', 'CDE04G1496' => 'cde', 'CDE07G0507' => 'cde', 'CDE08G0421' => 'cde', 'Cfa001503' => 'cfa', 'Cfa011468' => 'cfa', 'Cfa017636' => 'cfa', 'Ciclev10011863m.g' => 'ccl', 'Ciclev10028516m.g' => 'ccl', 'Ciclev10031651m.g' => 'ccl', 'Ciclev10031674m.g' => 'ccl', 'CiPaw.01G267700' => 'cil', 'CiPaw.02G182700' => 'cil', 'CiPaw.09G170500' => 'cil', 'CiPaw.13G097600' => 'cil', 'CiPaw.14G070900' => 'cil', 'ClCG05G021250' => 'cla', 'ClCG10G019990' => 'cla', 'COL.COLO4_14976' => 'col', 'COL.COLO4_26934' => 'col', 'COL.COLO4_36545' => 'col', 'COL.COLO4_36546' => 'col', 'Cpa.g.sc1.381' => 'cpa', 'Cpa.g.sc190.12' => 'cpa', 'Cpa.g.sc53.143' => 'cpa', 'Cpa.g.sc92.104' => 'cpa', 'CsaV3_3G036100' => 'csa', 'CsaV3_5G036020' => 'csa', 'CSS0000046' => 'camsi', 'CSS0021706' => 'camsi', 'CSS0025269' => 'camsi', 'CSS0026612' => 'camsi', 'CSS0033158' => 'camsi', 'CSS0036911' => 'camsi', 'CSS0037666' => 'camsi', 'CSS0039292' => 'camsi', 'DCAR_000321' => 'dca', 'DCAR_015006' => 'dca', 'DCAR_015191' => 'dca', 'Dinv31240' => 'din', 'Dinv31437' => 'din', 'Dinv32871' => 'din', 'Dinv35804' => 'din', 'Dinv36385' => 'din', 'Duzib106G1708' => 'dzi', 'Duzib114G0091' => 'dzi', 'Duzib114G0492' => 'dzi', 'Duzib128G0956' => 'dzi', 'Duzib168G0326' => 'dzi', 'Duzib170G0816' => 'dzi', 'ECA232G1816' => 'eca', 'ECA233G0169' => 'eca', 'ECA233G0628' => 'eca', 'ECA233G5045' => 'eca', 'ECA236G2343' => 'eca', 'ECA238G4227' => 'eca', 'ECA248G3498' => 'eca', 'EL10Ac7g15979' => 'bvu', 'EL10Ac7g16660' => 'bvu', 'Eucgr.A01656' => 'egr', 'Eucgr.B02387' => 'egr', 'Eucgr.G02875' => 'egr', 'Eucgr.J01053' => 'egr', 'FAN01G0167' => 'fan', 'FAN01G1708' => 'fan', 'FAN01G2390' => 'fan', 'FAN02G1496' => 'fan', 'FAN03G3478' => 'fan', 'FAN05G1514' => 'fan', 'FAN05G1827' => 'fan', 'FAN06G0428' => 'fan', 'FAN06G0816' => 'fan', 'FAN09G1279' => 'fan', 'FAN10G0715' => 'fan', 'FAN10G4120' => 'fan', 'FAN11G2055' => 'fan', 'FAN14G3893' => 'fan', 'FAN16G2077' => 'fan', 'FAN25G1939' => 'fan', 'FvH4_3g35480' => 'fve', 'FvH4_6g16600' => 'fve', 'FvH4_7g18540' => 'fve', 'FvH4_7g22000' => 'fve', 'Glyma.03G184800' => 'gma', 'Glyma.10G058600' => 'gma', 'Glyma.13G145400' => 'gma', 'Glyma.13G334400' => 'gma', 'Glyma.15G040100' => 'gma', 'Glyma.18G289000' => 'gma', 'Glyma.19G185300' => 'gma', 'Gohir.A01G213000' => 'ghi', 'Gohir.A03G039800' => 'ghi', 'Gohir.A04G071100' => 'ghi', 'Gohir.A09G145075' => 'ghi', 'Gohir.A10G201400' => 'ghi', 'Gohir.A13G019800' => 'ghi', 'Gohir.A13G228100' => 'ghi', 'Gohir.D01G201700' => 'ghi', 'Gohir.D03G128300' => 'ghi', 'Gohir.D04G109800' => 'ghi', 'Gohir.D09G141075' => 'ghi', 'Gohir.D10G209200' => 'ghi', 'Gohir.D13G020400' => 'ghi', 'Gohir.D13G233700' => 'ghi', 'Gorai.002G246400' => 'gra', 'Gorai.003G135000' => 'gra', 'Gorai.006G161800' => 'gra', 'Gorai.009G413900' => 'gra', 'Gorai.011G235300' => 'gra', 'Gorai.013G022700' => 'gra', 'Gorai.013G264500' => 'gra', 'GSVIVG01016191001' => 'vvi', 'GSVIVG01016193001' => 'vvi', 'GSVIVG01016580001' => 'vvi', 'GSVIVG01025006001' => 'vvi', 'GSVIVG01033664001' => 'vvi', 'HanXRQChr01g0027821' => 'han', 'HanXRQChr07g0201201' => 'han', 'HanXRQChr08g0220301' => 'han', 'HanXRQChr08g0220311' => 'han', 'HanXRQChr09g0248211' => 'han', 'HanXRQChr13g0400881' => 'han', 'HanXRQChr15g0496921' => 'han', 'Haze_16748' => 'cav', 'Haze_17039' => 'cav', 'Haze_20516' => 'cav', 'Haze_24054' => 'cav', 'Hma1.2p1_0145F.1_g065250' => 'hma', 'Hma1.2p1_0533F.1_g173620' => 'hma', 'Hma1.2p1_0828F.1_g225180' => 'hma', 'HPP92_006605' => 'vpl', 'HPP92_025765' => 'vpl', 'HPP92_026748' => 'vpl', 'Hund04988' => 'sun', 'Hund18926' => 'sun', 'Lalb_Chr01g0018641' => 'lal', 'Lalb_Chr02g0155601' => 'lal', 'Lalb_Chr04g0257811' => 'lal', 'Lalb_Chr19g0129401' => 'lal', 'Lalb_Chr25g0288911' => 'lal', 'Lj1g0002900' => 'lja', 'Lj1g0025366' => 'lja', 'Lj2A22T69' => 'lonja', 'Lj2C1057T17' => 'lonja', 'Lj2C119T13' => 'lonja', 'Lj3C987T3' => 'lonja', 'Lj3C988T7' => 'lonja', 'Lj3g0017993' => 'lja', 'Lj5g0006802' => 'lja', 'Lj8A86T51' => 'lonja', 'Lsat_1_v5_gn_1_51541' => 'lsa', 'Lsat_1_v5_gn_2_116501' => 'lsa', 'Lsat_1_v5_gn_5_53221' => 'lsa', 'Lsat_1_v5_gn_6_24401' => 'lsa', 'Lsat_1_v5_gn_8_16721' => 'lsa', 'Lsat_1_v5_gn_8_77941' => 'lsa', 'Lsat_1_v5_gn_9_65181' => 'lsa', 'Lsat_1_v5_gn_9_69620' => 'lsa', 'Manes.04G032500' => 'mes', 'Manes.08G011700' => 'mes', 'Manes.09G065100' => 'mes', 'Manes.10G032700' => 'mes', 'Mapoly0014s0151' => 'mpo', 'MBI14_g11675_MAGBIO' => 'mbi', 'MBI14_g40212_MAGBIO' => 'mbi', 'MBI17_g17639_MAGBIO' => 'mbi', 'MBI18_g42051_MAGBIO' => 'mbi', 'MCO08G223' => 'mco', 'MD01G1101800' => 'mdo', 'MD01G1124500' => 'mdo', 'MD04G1090700' => 'mdo', 'MD07G1168400' => 'mdo', 'MD07G1194400' => 'mdo', 'MD11G1143600' => 'mdo', 'MD12G1108700' => 'mdo', 'Medtr1g062980' => 'mtr', 'Medtr2g096640' => 'mtr', 'Medtr7g024320' => 'mtr', 'Medtr7g102330' => 'mtr', 'Medtr7g102350' => 'mtr', 'MELO3C009370.2' => 'cme', 'MELO3C012402.2' => 'cme', 'Migut.F01707' => 'egut', 'Migut.J00642' => 'egut', 'Migut.L01715' => 'egut', 'Migut.N02666' => 'egut', 'MSTRG.12641' => 'ama', 'MSTRG.26681' => 'ama', 'MSTRG.5770' => 'ama', 'MSTRG.8128' => 'ama', 'Nitab4.5_0000070g0190' => 'nta', 'Nitab4.5_0000070g0200' => 'nta', 'Nitab4.5_0000610g0040' => 'nta', 'Nitab4.5_0000610g0140' => 'nta', 'Nitab4.5_0001831g0120' => 'nta', 'Nitab4.5_0003782g0050' => 'nta', 'Nitab4.5_0004476g0030' => 'nta', 'Nitab4.5_0005019g0060' => 'nta', 'Nitab4.5_0006342g0020' => 'nta', 'Nitab4.5_0006672g0010' => 'nta', 'Nn2g10417' => 'nnu', 'Nn2g12810' => 'nnu', 'Nn2g13832' => 'nnu', 'Nn6g35254' => 'nnu', 'Oeu005032.1' => 'oeu', 'Oeu034492.1' => 'oeu', 'Oeu041485.1' => 'oeu', 'Oeu045235.2' => 'oeu', 'Os05g0113000' => 'osa', 'Os09g0570900' => 'osa', 'Peaxi162Scf00015g01614' => 'pax', 'Peaxi162Scf00145g00917' => 'pax', 'Peaxi162Scf00406g00136' => 'pax', 'Peaxi162Scf00466g00711' => 'pax', 'Peaxi162Scf00722g00420' => 'pax', 'PGR004G1572' => 'pgr', 'PGR004G2883' => 'pgr', 'PGR102G0440' => 'pgr', 'PGR142G1634' => 'pgr', 'PGSC0003DMG400003868' => 'stu', 'PGSC0003DMG400023521' => 'stu', 'PGSC0003DMG400045234' => 'stu', 'Phvul.001G180200' => 'pvu', 'Phvul.007G150800' => 'pvu', 'Phvul.008G013100' => 'pvu', 'Phvul.L003943' => 'pvu', 'Potri.001G237100' => 'ptr', 'Potri.001G442600' => 'ptr', 'Potri.008G033200' => 'ptr', 'Potri.008G052900' => 'ptr', 'Potri.010G207700' => 'ptr', 'Potri.010G228500' => 'ptr', 'Potri.011G154600' => 'ptr', 'Pp3c17_6970' => 'ppa', 'Pp3c1_25430' => 'ppa', 'Pp3c2_18030' => 'ppa', 'Pp3c5_11550' => 'ppa', 'Pp3c6_19000' => 'ppa', 'PRCOL_00006485' => 'pco', 'Prupe.2G207000' => 'ppe', 'Prupe.2G231900' => 'ppe', 'Prupe.6G081400' => 'ppe', 'Prupe.7G127300' => 'ppe', 'Psat3g182560' => 'psa', 'Psat6g074960' => 'psa', 'PSO339G1537' => 'pso', 'PSO339G2362' => 'pso', 'PSO339G3138' => 'pso', 'PSO339G3247' => 'pso', 'PSO648G0008' => 'pso', 'PSO801G0750' => 'pso', 'QL01p032945' => 'qlo', 'QL01p033003' => 'qlo', 'QL07p042843' => 'qlo', 'QL08p053857' => 'qlo', 'QL08p059081' => 'qlo', 'RcHm_v2.0_Chr1g0362321' => 'rch', 'RcHm_v2.0_Chr1g0366351' => 'rch', 'RcHm_v2.0_Chr2g0171731' => 'rch', 'RcHm_v2.0_Chr3g0470541' => 'rch', 'RcHm_v2.0_Chr4g0409571' => 'rch', 'RcHm_v2.0_Chr5g0063651' => 'rch', 'RcHm_v2.0_Chr7g0217131' => 'rch', 'Rhsim03G0089900' => 'rsi', 'Rhsim03G0132600' => 'rsi', 'Rhsim04G0142300' => 'rsi', 'Rhsim09G0147000' => 'rsi', 'Rhsim09G0164700' => 'rsi', 'Rhsim13G0085300' => 'rsi', 'Sabra08G0022000' => 'sbr', 'Sabra08G0038000' => 'sbr', 'Sabra10G0160300' => 'sbr', 'Sabra10G0177200' => 'sbr', 'Sabra11G0145000' => 'sbr', 'Sabra16G0142900' => 'sbr', 'SalBow2G1036' => 'sbo', 'SalBow3G1565' => 'sbo', 'SalBow3G3926' => 'sbo', 'SalBow5G4498' => 'sbo', 'SalBow5G4599' => 'sbo', 'SalBow6G4130' => 'sbo', 'Sc02g0001550' => 'sci', 'Sc06g0008240' => 'sci', 'Sed0005917' => 'sed', 'Sed0016686' => 'sed', 'Sed0021069' => 'sed', 'SGA_v2.0_scaffold224G42937' => 'sas', 'SGA_v2.0_scaffold75G24832' => 'sas', 'SHI05959' => 'shi', 'SHI05960' => 'shi', 'SMO118G0189' => 'smo', 'Solyc05g054620.4' => 'sly', 'Solyc09g008350.3' => 'sly', 'Sopen05g033100' => 'spe', 'Sopen09g003170' => 'spe', 'Sp4g19100' => 'spa', 'Sp4g21860' => 'spa', 'Sp5g15630' => 'spa', 'TAR362G0554' => 'tar', 'TAR369G0261' => 'tar', 'TAR369G0527' => 'tar', 'TAR369G0682' => 'tar', 'TAR623G1185' => 'tar', 'TAR633G0405' => 'tar', 'TAR633G1140' => 'tar', 'TAR636G3399' => 'tar', 'THA.LOC104807065' => 'tha', 'THA.LOC104810025' => 'tha', 'THA.LOC104810818' => 'tha', 'Thecc.05G069600' => 'tca', 'Thecc.09G325600' => 'tca', 'Thecc.10G046500' => 'tca', 'Thecc.10G086200' => 'tca', 'Thhalv10002542m.g' => 'esa', 'Thhalv10016601m.g' => 'esa', 'Thhalv10016727m.g' => 'esa', 'TPR.G15497' => 'tpr', 'TPR.G15515' => 'tpr', 'TPR.G31188' => 'tpr', 'TPR.G32808' => 'tpr', 'TPR.G34289' => 'tpr', 'TPR.G7090' => 'tpr', 'TWI15G1058' => 'twi', 'TWI38G0438' => 'twi', 'TWI74G1580' => 'twi', 'TWI75G1864' => 'twi', 'unitig_0.g2162' => 'ugi', 'unitig_26.g9237' => 'ugi', 'unitig_6.g29262' => 'ugi', 'unitig_747.g21425' => 'ugi', 'unitig_747.g21426' => 'ugi', 'unitig_8.g4115' => 'ugi', 'vmacro00555' => 'vma', 'vmacro03097' => 'vma', 'vmacro07159' => 'vma', 'vmacro07308' => 'vma', 'vmacro08786' => 'vma', 'vmacro09567' => 'vma', 'vmacro10247' => 'vma', 'VMungo0720G0671' => 'vmu', 'VMungo1080G0498' => 'vmu', 'VMungo1383G0672' => 'vmu', 'VMungo1383G2464' => 'vmu', 'VMungo1383G3135' => 'vmu', 'Zm00001eb095840' => 'zma', 'Zm00001eb266620' => 'zma', 'Zm00001eb302790' => 'zma', 'Zm00001eb307730' => 'zma', 'Zm00001eb355670' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001446', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001446' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001446', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001446' ) ), 'genes' => array( 'A04p28150' => 'bna', 'A04p30390' => 'bna', 'Aa31LG5G20050' => 'aar', 'Aa31LG5G22060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_240.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_241.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_306.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2241' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2255' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2682' => 'aag', 'Actinidia07719' => 'ach', 'Actinidia20858' => 'ach', 'Actinidia26656' => 'ach', 'Actinidia28915' => 'ach', 'Actinidia31323' => 'ach', 'Actinidia34800' => 'ach', 'Actinidia37216' => 'ach', 'Actinidia38876' => 'ach', 'Ah.08g219100' => 'amhyb', 'Ah.15g096910' => 'amhyb', 'AL4G33040' => 'aly', 'AL4G36980' => 'aly', 'AL5G20630' => 'aly', 'AL5G24610' => 'aly', 'Aqoxy1G01129' => 'aox', 'Aqoxy2G01710' => 'aox', 'Aqoxy2G02055' => 'aox', 'Aqoxy35s003' => 'aox', 'Aqoxy4G02978' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52ECNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EW6J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E47FLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K62C63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDI7S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PW8IDM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCL9IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8P42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFVJ5K' => 'arhy', 'AT2G36840' => 'ath', 'AT2G39570' => 'ath', 'ATR0559G170' => 'atr', 'ATR0723G066' => 'atr', 'Atru.chr12.499' => 'acertr', 'Atru.chr12.871' => 'acertr', 'Atru.chr3.3839' => 'acertr', 'Atru.chr8.1767' => 'acertr', 'AUR62001821' => 'cqu', 'AUR62009607' => 'cqu', 'AUR62026922' => 'cqu', 'AUR62042060' => 'cqu', 'BcaB05g23481' => 'bca', 'BcaB06g28956' => 'bca', 'BcaB06g29098' => 'bca', 'BcaC02g07393' => 'bca', 'BcaC02g07576' => 'bca', 'BcaC09g49724' => 'bca', 'BcaNung05999' => 'bca', 'BolC1t03304H' => 'bol', 'BolC4t28042H' => 'bol', 'BolC4t28241H' => 'bol', 'BraA04t18300Z' => 'bra', 'BraA04t18469Z' => 'bra', 'BraA05t19648Z' => 'bra', 'C01p33580' => 'bna', 'C04p65530' => 'bna', 'C04p67430' => 'bna', 'CAN.G1013.5' => 'can', 'CAN.G111.9' => 'can', 'CAN.G900.18' => 'can', 'CANSAT56G1216' => 'cansat', 'CANSAT80G1050' => 'cansat', 'CARHR131300' => 'chi', 'CARHR134440' => 'chi', 'CARHR154300' => 'chi', 'Carub.0004s1869' => 'cru', 'Carub.0004s2164' => 'cru', 'Carub.0005s1177' => 'cru', 'Ca_01338_v3' => 'car', 'Ca_07246_v3' => 'car', 'Ca_08890_v3' => 'car', 'Ca_08914_v3' => 'car', 'Ca_30641_v3' => 'car', 'CBR_g4757' => 'cbr', 'Cc01_g12510' => 'ccan', 'Cc02_g08120' => 'ccan', 'Cc02_g10810' => 'ccan', 'Cc06_g04410' => 'ccan', 'CDE04G1496' => 'cde', 'CDE07G0507' => 'cde', 'CDE08G0421' => 'cde', 'Cfa001503' => 'cfa', 'Cfa011468' => 'cfa', 'Cfa017636' => 'cfa', 'Ciclev10011863m.g' => 'ccl', 'Ciclev10028516m.g' => 'ccl', 'Ciclev10031651m.g' => 'ccl', 'Ciclev10031674m.g' => 'ccl', 'CiPaw.01G267700' => 'cil', 'CiPaw.02G182700' => 'cil', 'CiPaw.09G170500' => 'cil', 'CiPaw.13G097600' => 'cil', 'CiPaw.14G070900' => 'cil', 'ClCG05G021250' => 'cla', 'ClCG10G019990' => 'cla', 'COL.COLO4_14976' => 'col', 'COL.COLO4_26934' => 'col', 'COL.COLO4_36545' => 'col', 'COL.COLO4_36546' => 'col', 'Cpa.g.sc1.381' => 'cpa', 'Cpa.g.sc190.12' => 'cpa', 'Cpa.g.sc53.143' => 'cpa', 'Cpa.g.sc92.104' => 'cpa', 'CsaV3_3G036100' => 'csa', 'CsaV3_5G036020' => 'csa', 'CSS0000046' => 'camsi', 'CSS0021706' => 'camsi', 'CSS0025269' => 'camsi', 'CSS0026612' => 'camsi', 'CSS0033158' => 'camsi', 'CSS0036911' => 'camsi', 'CSS0037666' => 'camsi', 'CSS0039292' => 'camsi', 'DCAR_000321' => 'dca', 'DCAR_015006' => 'dca', 'DCAR_015191' => 'dca', 'Dinv31240' => 'din', 'Dinv31437' => 'din', 'Dinv32871' => 'din', 'Dinv35804' => 'din', 'Dinv36385' => 'din', 'Duzib106G1708' => 'dzi', 'Duzib114G0091' => 'dzi', 'Duzib114G0492' => 'dzi', 'Duzib128G0956' => 'dzi', 'Duzib168G0326' => 'dzi', 'Duzib170G0816' => 'dzi', 'ECA232G1816' => 'eca', 'ECA233G0169' => 'eca', 'ECA233G0628' => 'eca', 'ECA233G5045' => 'eca', 'ECA236G2343' => 'eca', 'ECA238G4227' => 'eca', 'ECA248G3498' => 'eca', 'EL10Ac7g15979' => 'bvu', 'EL10Ac7g16660' => 'bvu', 'Eucgr.A01656' => 'egr', 'Eucgr.B02387' => 'egr', 'Eucgr.G02875' => 'egr', 'Eucgr.J01053' => 'egr', 'FAN01G0167' => 'fan', 'FAN01G1708' => 'fan', 'FAN01G2390' => 'fan', 'FAN02G1496' => 'fan', 'FAN03G3478' => 'fan', 'FAN05G1514' => 'fan', 'FAN05G1827' => 'fan', 'FAN06G0428' => 'fan', 'FAN06G0816' => 'fan', 'FAN09G1279' => 'fan', 'FAN10G0715' => 'fan', 'FAN10G4120' => 'fan', 'FAN11G2055' => 'fan', 'FAN14G3893' => 'fan', 'FAN16G2077' => 'fan', 'FAN25G1939' => 'fan', 'FvH4_3g35480' => 'fve', 'FvH4_6g16600' => 'fve', 'FvH4_7g18540' => 'fve', 'FvH4_7g22000' => 'fve', 'Glyma.03G184800' => 'gma', 'Glyma.10G058600' => 'gma', 'Glyma.13G145400' => 'gma', 'Glyma.13G334400' => 'gma', 'Glyma.15G040100' => 'gma', 'Glyma.18G289000' => 'gma', 'Glyma.19G185300' => 'gma', 'Gohir.A01G213000' => 'ghi', 'Gohir.A03G039800' => 'ghi', 'Gohir.A04G071100' => 'ghi', 'Gohir.A09G145075' => 'ghi', 'Gohir.A10G201400' => 'ghi', 'Gohir.A13G019800' => 'ghi', 'Gohir.A13G228100' => 'ghi', 'Gohir.D01G201700' => 'ghi', 'Gohir.D03G128300' => 'ghi', 'Gohir.D04G109800' => 'ghi', 'Gohir.D09G141075' => 'ghi', 'Gohir.D10G209200' => 'ghi', 'Gohir.D13G020400' => 'ghi', 'Gohir.D13G233700' => 'ghi', 'Gorai.002G246400' => 'gra', 'Gorai.003G135000' => 'gra', 'Gorai.006G161800' => 'gra', 'Gorai.009G413900' => 'gra', 'Gorai.011G235300' => 'gra', 'Gorai.013G022700' => 'gra', 'Gorai.013G264500' => 'gra', 'GSVIVG01016191001' => 'vvi', 'GSVIVG01016193001' => 'vvi', 'GSVIVG01016580001' => 'vvi', 'GSVIVG01025006001' => 'vvi', 'GSVIVG01033664001' => 'vvi', 'HanXRQChr01g0027821' => 'han', 'HanXRQChr07g0201201' => 'han', 'HanXRQChr08g0220301' => 'han', 'HanXRQChr08g0220311' => 'han', 'HanXRQChr09g0248211' => 'han', 'HanXRQChr13g0400881' => 'han', 'HanXRQChr15g0496921' => 'han', 'Haze_16748' => 'cav', 'Haze_17039' => 'cav', 'Haze_20516' => 'cav', 'Haze_24054' => 'cav', 'Hma1.2p1_0145F.1_g065250' => 'hma', 'Hma1.2p1_0533F.1_g173620' => 'hma', 'Hma1.2p1_0828F.1_g225180' => 'hma', 'HPP92_006605' => 'vpl', 'HPP92_025765' => 'vpl', 'HPP92_026748' => 'vpl', 'Hund04988' => 'sun', 'Hund18926' => 'sun', 'Lalb_Chr01g0018641' => 'lal', 'Lalb_Chr02g0155601' => 'lal', 'Lalb_Chr04g0257811' => 'lal', 'Lalb_Chr19g0129401' => 'lal', 'Lalb_Chr25g0288911' => 'lal', 'Lj1g0002900' => 'lja', 'Lj1g0025366' => 'lja', 'Lj2A22T69' => 'lonja', 'Lj2C1057T17' => 'lonja', 'Lj2C119T13' => 'lonja', 'Lj3C987T3' => 'lonja', 'Lj3C988T7' => 'lonja', 'Lj3g0017993' => 'lja', 'Lj5g0006802' => 'lja', 'Lj8A86T51' => 'lonja', 'Lsat_1_v5_gn_1_51541' => 'lsa', 'Lsat_1_v5_gn_2_116501' => 'lsa', 'Lsat_1_v5_gn_5_53221' => 'lsa', 'Lsat_1_v5_gn_6_24401' => 'lsa', 'Lsat_1_v5_gn_8_16721' => 'lsa', 'Lsat_1_v5_gn_8_77941' => 'lsa', 'Lsat_1_v5_gn_9_65181' => 'lsa', 'Lsat_1_v5_gn_9_69620' => 'lsa', 'Manes.04G032500' => 'mes', 'Manes.08G011700' => 'mes', 'Manes.09G065100' => 'mes', 'Manes.10G032700' => 'mes', 'Mapoly0014s0151' => 'mpo', 'MBI14_g11675_MAGBIO' => 'mbi', 'MBI14_g40212_MAGBIO' => 'mbi', 'MBI17_g17639_MAGBIO' => 'mbi', 'MBI18_g42051_MAGBIO' => 'mbi', 'MCO08G223' => 'mco', 'MD01G1101800' => 'mdo', 'MD01G1124500' => 'mdo', 'MD04G1090700' => 'mdo', 'MD07G1168400' => 'mdo', 'MD07G1194400' => 'mdo', 'MD11G1143600' => 'mdo', 'MD12G1108700' => 'mdo', 'Medtr1g062980' => 'mtr', 'Medtr2g096640' => 'mtr', 'Medtr7g024320' => 'mtr', 'Medtr7g102330' => 'mtr', 'Medtr7g102350' => 'mtr', 'MELO3C009370.2' => 'cme', 'MELO3C012402.2' => 'cme', 'Migut.F01707' => 'egut', 'Migut.J00642' => 'egut', 'Migut.L01715' => 'egut', 'Migut.N02666' => 'egut', 'MSTRG.12641' => 'ama', 'MSTRG.26681' => 'ama', 'MSTRG.5770' => 'ama', 'MSTRG.8128' => 'ama', 'Nitab4.5_0000070g0190' => 'nta', 'Nitab4.5_0000070g0200' => 'nta', 'Nitab4.5_0000610g0040' => 'nta', 'Nitab4.5_0000610g0140' => 'nta', 'Nitab4.5_0001831g0120' => 'nta', 'Nitab4.5_0003782g0050' => 'nta', 'Nitab4.5_0004476g0030' => 'nta', 'Nitab4.5_0005019g0060' => 'nta', 'Nitab4.5_0006342g0020' => 'nta', 'Nitab4.5_0006672g0010' => 'nta', 'Nn2g10417' => 'nnu', 'Nn2g12810' => 'nnu', 'Nn2g13832' => 'nnu', 'Nn6g35254' => 'nnu', 'Oeu005032.1' => 'oeu', 'Oeu034492.1' => 'oeu', 'Oeu041485.1' => 'oeu', 'Oeu045235.2' => 'oeu', 'Os05g0113000' => 'osa', 'Os09g0570900' => 'osa', 'Peaxi162Scf00015g01614' => 'pax', 'Peaxi162Scf00145g00917' => 'pax', 'Peaxi162Scf00406g00136' => 'pax', 'Peaxi162Scf00466g00711' => 'pax', 'Peaxi162Scf00722g00420' => 'pax', 'PGR004G1572' => 'pgr', 'PGR004G2883' => 'pgr', 'PGR102G0440' => 'pgr', 'PGR142G1634' => 'pgr', 'PGSC0003DMG400003868' => 'stu', 'PGSC0003DMG400023521' => 'stu', 'PGSC0003DMG400045234' => 'stu', 'Phvul.001G180200' => 'pvu', 'Phvul.007G150800' => 'pvu', 'Phvul.008G013100' => 'pvu', 'Phvul.L003943' => 'pvu', 'Potri.001G237100' => 'ptr', 'Potri.001G442600' => 'ptr', 'Potri.008G033200' => 'ptr', 'Potri.008G052900' => 'ptr', 'Potri.010G207700' => 'ptr', 'Potri.010G228500' => 'ptr', 'Potri.011G154600' => 'ptr', 'Pp3c17_6970' => 'ppa', 'Pp3c1_25430' => 'ppa', 'Pp3c2_18030' => 'ppa', 'Pp3c5_11550' => 'ppa', 'Pp3c6_19000' => 'ppa', 'PRCOL_00006485' => 'pco', 'Prupe.2G207000' => 'ppe', 'Prupe.2G231900' => 'ppe', 'Prupe.6G081400' => 'ppe', 'Prupe.7G127300' => 'ppe', 'Psat3g182560' => 'psa', 'Psat6g074960' => 'psa', 'PSO339G1537' => 'pso', 'PSO339G2362' => 'pso', 'PSO339G3138' => 'pso', 'PSO339G3247' => 'pso', 'PSO648G0008' => 'pso', 'PSO801G0750' => 'pso', 'QL01p032945' => 'qlo', 'QL01p033003' => 'qlo', 'QL07p042843' => 'qlo', 'QL08p053857' => 'qlo', 'QL08p059081' => 'qlo', 'RcHm_v2.0_Chr1g0362321' => 'rch', 'RcHm_v2.0_Chr1g0366351' => 'rch', 'RcHm_v2.0_Chr2g0171731' => 'rch', 'RcHm_v2.0_Chr3g0470541' => 'rch', 'RcHm_v2.0_Chr4g0409571' => 'rch', 'RcHm_v2.0_Chr5g0063651' => 'rch', 'RcHm_v2.0_Chr7g0217131' => 'rch', 'Rhsim03G0089900' => 'rsi', 'Rhsim03G0132600' => 'rsi', 'Rhsim04G0142300' => 'rsi', 'Rhsim09G0147000' => 'rsi', 'Rhsim09G0164700' => 'rsi', 'Rhsim13G0085300' => 'rsi', 'Sabra08G0022000' => 'sbr', 'Sabra08G0038000' => 'sbr', 'Sabra10G0160300' => 'sbr', 'Sabra10G0177200' => 'sbr', 'Sabra11G0145000' => 'sbr', 'Sabra16G0142900' => 'sbr', 'SalBow2G1036' => 'sbo', 'SalBow3G1565' => 'sbo', 'SalBow3G3926' => 'sbo', 'SalBow5G4498' => 'sbo', 'SalBow5G4599' => 'sbo', 'SalBow6G4130' => 'sbo', 'Sc02g0001550' => 'sci', 'Sc06g0008240' => 'sci', 'Sed0005917' => 'sed', 'Sed0016686' => 'sed', 'Sed0021069' => 'sed', 'SGA_v2.0_scaffold224G42937' => 'sas', 'SGA_v2.0_scaffold75G24832' => 'sas', 'SHI05959' => 'shi', 'SHI05960' => 'shi', 'SMO118G0189' => 'smo', 'Solyc05g054620.4' => 'sly', 'Solyc09g008350.3' => 'sly', 'Sopen05g033100' => 'spe', 'Sopen09g003170' => 'spe', 'Sp4g19100' => 'spa', 'Sp4g21860' => 'spa', 'Sp5g15630' => 'spa', 'TAR362G0554' => 'tar', 'TAR369G0261' => 'tar', 'TAR369G0527' => 'tar', 'TAR369G0682' => 'tar', 'TAR623G1185' => 'tar', 'TAR633G0405' => 'tar', 'TAR633G1140' => 'tar', 'TAR636G3399' => 'tar', 'THA.LOC104807065' => 'tha', 'THA.LOC104810025' => 'tha', 'THA.LOC104810818' => 'tha', 'Thecc.05G069600' => 'tca', 'Thecc.09G325600' => 'tca', 'Thecc.10G046500' => 'tca', 'Thecc.10G086200' => 'tca', 'Thhalv10002542m.g' => 'esa', 'Thhalv10016601m.g' => 'esa', 'Thhalv10016727m.g' => 'esa', 'TPR.G15497' => 'tpr', 'TPR.G15515' => 'tpr', 'TPR.G31188' => 'tpr', 'TPR.G32808' => 'tpr', 'TPR.G34289' => 'tpr', 'TPR.G7090' => 'tpr', 'TWI15G1058' => 'twi', 'TWI38G0438' => 'twi', 'TWI74G1580' => 'twi', 'TWI75G1864' => 'twi', 'unitig_0.g2162' => 'ugi', 'unitig_26.g9237' => 'ugi', 'unitig_6.g29262' => 'ugi', 'unitig_747.g21425' => 'ugi', 'unitig_747.g21426' => 'ugi', 'unitig_8.g4115' => 'ugi', 'vmacro00555' => 'vma', 'vmacro03097' => 'vma', 'vmacro07159' => 'vma', 'vmacro07308' => 'vma', 'vmacro08786' => 'vma', 'vmacro09567' => 'vma', 'vmacro10247' => 'vma', 'VMungo0720G0671' => 'vmu', 'VMungo1080G0498' => 'vmu', 'VMungo1383G0672' => 'vmu', 'VMungo1383G2464' => 'vmu', 'VMungo1383G3135' => 'vmu', 'Zm00001eb095840' => 'zma', 'Zm00001eb266620' => 'zma', 'Zm00001eb302790' => 'zma', 'Zm00001eb307730' => 'zma', 'Zm00001eb355670' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001446' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001446' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001446' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001446' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001446', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p28150' => 'bna', 'A04p30390' => 'bna', 'Aa31LG5G20050' => 'aar', 'Aa31LG5G22060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_240.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_241.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_306.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2241' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2255' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2682' => 'aag', 'Actinidia07719' => 'ach', 'Actinidia20858' => 'ach', 'Actinidia26656' => 'ach', 'Actinidia28915' => 'ach', 'Actinidia31323' => 'ach', 'Actinidia34800' => 'ach', 'Actinidia37216' => 'ach', 'Actinidia38876' => 'ach', 'Ah.08g219100' => 'amhyb', 'Ah.15g096910' => 'amhyb', 'AL4G33040' => 'aly', 'AL4G36980' => 'aly', 'AL5G20630' => 'aly', 'AL5G24610' => 'aly', 'Aqoxy1G01129' => 'aox', 'Aqoxy2G01710' => 'aox', 'Aqoxy2G02055' => 'aox', 'Aqoxy35s003' => 'aox', 'Aqoxy4G02978' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52ECNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EW6J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E47FLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K62C63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDI7S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PW8IDM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCL9IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8P42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFVJ5K' => 'arhy', 'AT2G36840' => 'ath', 'AT2G39570' => 'ath', 'ATR0559G170' => 'atr', 'ATR0723G066' => 'atr', 'Atru.chr12.499' => 'acertr', 'Atru.chr12.871' => 'acertr', 'Atru.chr3.3839' => 'acertr', 'Atru.chr8.1767' => 'acertr', 'AUR62001821' => 'cqu', 'AUR62009607' => 'cqu', 'AUR62026922' => 'cqu', 'AUR62042060' => 'cqu', 'BcaB05g23481' => 'bca', 'BcaB06g28956' => 'bca', 'BcaB06g29098' => 'bca', 'BcaC02g07393' => 'bca', 'BcaC02g07576' => 'bca', 'BcaC09g49724' => 'bca', 'BcaNung05999' => 'bca', 'BolC1t03304H' => 'bol', 'BolC4t28042H' => 'bol', 'BolC4t28241H' => 'bol', 'BraA04t18300Z' => 'bra', 'BraA04t18469Z' => 'bra', 'BraA05t19648Z' => 'bra', 'C01p33580' => 'bna', 'C04p65530' => 'bna', 'C04p67430' => 'bna', 'CAN.G1013.5' => 'can', 'CAN.G111.9' => 'can', 'CAN.G900.18' => 'can', 'CANSAT56G1216' => 'cansat', 'CANSAT80G1050' => 'cansat', 'CARHR131300' => 'chi', 'CARHR134440' => 'chi', 'CARHR154300' => 'chi', 'Carub.0004s1869' => 'cru', 'Carub.0004s2164' => 'cru', 'Carub.0005s1177' => 'cru', 'Ca_01338_v3' => 'car', 'Ca_07246_v3' => 'car', 'Ca_08890_v3' => 'car', 'Ca_08914_v3' => 'car', 'Ca_30641_v3' => 'car', 'CBR_g4757' => 'cbr', 'Cc01_g12510' => 'ccan', 'Cc02_g08120' => 'ccan', 'Cc02_g10810' => 'ccan', 'Cc06_g04410' => 'ccan', 'CDE04G1496' => 'cde', 'CDE07G0507' => 'cde', 'CDE08G0421' => 'cde', 'Cfa001503' => 'cfa', 'Cfa011468' => 'cfa', 'Cfa017636' => 'cfa', 'Ciclev10011863m.g' => 'ccl', 'Ciclev10028516m.g' => 'ccl', 'Ciclev10031651m.g' => 'ccl', 'Ciclev10031674m.g' => 'ccl', 'CiPaw.01G267700' => 'cil', 'CiPaw.02G182700' => 'cil', 'CiPaw.09G170500' => 'cil', 'CiPaw.13G097600' => 'cil', 'CiPaw.14G070900' => 'cil', 'ClCG05G021250' => 'cla', 'ClCG10G019990' => 'cla', 'COL.COLO4_14976' => 'col', 'COL.COLO4_26934' => 'col', 'COL.COLO4_36545' => 'col', 'COL.COLO4_36546' => 'col', 'Cpa.g.sc1.381' => 'cpa', 'Cpa.g.sc190.12' => 'cpa', 'Cpa.g.sc53.143' => 'cpa', 'Cpa.g.sc92.104' => 'cpa', 'CsaV3_3G036100' => 'csa', 'CsaV3_5G036020' => 'csa', 'CSS0000046' => 'camsi', 'CSS0021706' => 'camsi', 'CSS0025269' => 'camsi', 'CSS0026612' => 'camsi', 'CSS0033158' => 'camsi', 'CSS0036911' => 'camsi', 'CSS0037666' => 'camsi', 'CSS0039292' => 'camsi', 'DCAR_000321' => 'dca', 'DCAR_015006' => 'dca', 'DCAR_015191' => 'dca', 'Dinv31240' => 'din', 'Dinv31437' => 'din', 'Dinv32871' => 'din', 'Dinv35804' => 'din', 'Dinv36385' => 'din', 'Duzib106G1708' => 'dzi', 'Duzib114G0091' => 'dzi', 'Duzib114G0492' => 'dzi', 'Duzib128G0956' => 'dzi', 'Duzib168G0326' => 'dzi', 'Duzib170G0816' => 'dzi', 'ECA232G1816' => 'eca', 'ECA233G0169' => 'eca', 'ECA233G0628' => 'eca', 'ECA233G5045' => 'eca', 'ECA236G2343' => 'eca', 'ECA238G4227' => 'eca', 'ECA248G3498' => 'eca', 'EL10Ac7g15979' => 'bvu', 'EL10Ac7g16660' => 'bvu', 'Eucgr.A01656' => 'egr', 'Eucgr.B02387' => 'egr', 'Eucgr.G02875' => 'egr', 'Eucgr.J01053' => 'egr', 'FAN01G0167' => 'fan', 'FAN01G1708' => 'fan', 'FAN01G2390' => 'fan', 'FAN02G1496' => 'fan', 'FAN03G3478' => 'fan', 'FAN05G1514' => 'fan', 'FAN05G1827' => 'fan', 'FAN06G0428' => 'fan', 'FAN06G0816' => 'fan', 'FAN09G1279' => 'fan', 'FAN10G0715' => 'fan', 'FAN10G4120' => 'fan', 'FAN11G2055' => 'fan', 'FAN14G3893' => 'fan', 'FAN16G2077' => 'fan', 'FAN25G1939' => 'fan', 'FvH4_3g35480' => 'fve', 'FvH4_6g16600' => 'fve', 'FvH4_7g18540' => 'fve', 'FvH4_7g22000' => 'fve', 'Glyma.03G184800' => 'gma', 'Glyma.10G058600' => 'gma', 'Glyma.13G145400' => 'gma', 'Glyma.13G334400' => 'gma', 'Glyma.15G040100' => 'gma', 'Glyma.18G289000' => 'gma', 'Glyma.19G185300' => 'gma', 'Gohir.A01G213000' => 'ghi', 'Gohir.A03G039800' => 'ghi', 'Gohir.A04G071100' => 'ghi', 'Gohir.A09G145075' => 'ghi', 'Gohir.A10G201400' => 'ghi', 'Gohir.A13G019800' => 'ghi', 'Gohir.A13G228100' => 'ghi', 'Gohir.D01G201700' => 'ghi', 'Gohir.D03G128300' => 'ghi', 'Gohir.D04G109800' => 'ghi', 'Gohir.D09G141075' => 'ghi', 'Gohir.D10G209200' => 'ghi', 'Gohir.D13G020400' => 'ghi', 'Gohir.D13G233700' => 'ghi', 'Gorai.002G246400' => 'gra', 'Gorai.003G135000' => 'gra', 'Gorai.006G161800' => 'gra', 'Gorai.009G413900' => 'gra', 'Gorai.011G235300' => 'gra', 'Gorai.013G022700' => 'gra', 'Gorai.013G264500' => 'gra', 'GSVIVG01016191001' => 'vvi', 'GSVIVG01016193001' => 'vvi', 'GSVIVG01016580001' => 'vvi', 'GSVIVG01025006001' => 'vvi', 'GSVIVG01033664001' => 'vvi', 'HanXRQChr01g0027821' => 'han', 'HanXRQChr07g0201201' => 'han', 'HanXRQChr08g0220301' => 'han', 'HanXRQChr08g0220311' => 'han', 'HanXRQChr09g0248211' => 'han', 'HanXRQChr13g0400881' => 'han', 'HanXRQChr15g0496921' => 'han', 'Haze_16748' => 'cav', 'Haze_17039' => 'cav', 'Haze_20516' => 'cav', 'Haze_24054' => 'cav', 'Hma1.2p1_0145F.1_g065250' => 'hma', 'Hma1.2p1_0533F.1_g173620' => 'hma', 'Hma1.2p1_0828F.1_g225180' => 'hma', 'HPP92_006605' => 'vpl', 'HPP92_025765' => 'vpl', 'HPP92_026748' => 'vpl', 'Hund04988' => 'sun', 'Hund18926' => 'sun', 'Lalb_Chr01g0018641' => 'lal', 'Lalb_Chr02g0155601' => 'lal', 'Lalb_Chr04g0257811' => 'lal', 'Lalb_Chr19g0129401' => 'lal', 'Lalb_Chr25g0288911' => 'lal', 'Lj1g0002900' => 'lja', 'Lj1g0025366' => 'lja', 'Lj2A22T69' => 'lonja', 'Lj2C1057T17' => 'lonja', 'Lj2C119T13' => 'lonja', 'Lj3C987T3' => 'lonja', 'Lj3C988T7' => 'lonja', 'Lj3g0017993' => 'lja', 'Lj5g0006802' => 'lja', 'Lj8A86T51' => 'lonja', 'Lsat_1_v5_gn_1_51541' => 'lsa', 'Lsat_1_v5_gn_2_116501' => 'lsa', 'Lsat_1_v5_gn_5_53221' => 'lsa', 'Lsat_1_v5_gn_6_24401' => 'lsa', 'Lsat_1_v5_gn_8_16721' => 'lsa', 'Lsat_1_v5_gn_8_77941' => 'lsa', 'Lsat_1_v5_gn_9_65181' => 'lsa', 'Lsat_1_v5_gn_9_69620' => 'lsa', 'Manes.04G032500' => 'mes', 'Manes.08G011700' => 'mes', 'Manes.09G065100' => 'mes', 'Manes.10G032700' => 'mes', 'Mapoly0014s0151' => 'mpo', 'MBI14_g11675_MAGBIO' => 'mbi', 'MBI14_g40212_MAGBIO' => 'mbi', 'MBI17_g17639_MAGBIO' => 'mbi', 'MBI18_g42051_MAGBIO' => 'mbi', 'MCO08G223' => 'mco', 'MD01G1101800' => 'mdo', 'MD01G1124500' => 'mdo', 'MD04G1090700' => 'mdo', 'MD07G1168400' => 'mdo', 'MD07G1194400' => 'mdo', 'MD11G1143600' => 'mdo', 'MD12G1108700' => 'mdo', 'Medtr1g062980' => 'mtr', 'Medtr2g096640' => 'mtr', 'Medtr7g024320' => 'mtr', 'Medtr7g102330' => 'mtr', 'Medtr7g102350' => 'mtr', 'MELO3C009370.2' => 'cme', 'MELO3C012402.2' => 'cme', 'Migut.F01707' => 'egut', 'Migut.J00642' => 'egut', 'Migut.L01715' => 'egut', 'Migut.N02666' => 'egut', 'MSTRG.12641' => 'ama', 'MSTRG.26681' => 'ama', 'MSTRG.5770' => 'ama', 'MSTRG.8128' => 'ama', 'Nitab4.5_0000070g0190' => 'nta', 'Nitab4.5_0000070g0200' => 'nta', 'Nitab4.5_0000610g0040' => 'nta', 'Nitab4.5_0000610g0140' => 'nta', 'Nitab4.5_0001831g0120' => 'nta', 'Nitab4.5_0003782g0050' => 'nta', 'Nitab4.5_0004476g0030' => 'nta', 'Nitab4.5_0005019g0060' => 'nta', 'Nitab4.5_0006342g0020' => 'nta', 'Nitab4.5_0006672g0010' => 'nta', 'Nn2g10417' => 'nnu', 'Nn2g12810' => 'nnu', 'Nn2g13832' => 'nnu', 'Nn6g35254' => 'nnu', 'Oeu005032.1' => 'oeu', 'Oeu034492.1' => 'oeu', 'Oeu041485.1' => 'oeu', 'Oeu045235.2' => 'oeu', 'Os05g0113000' => 'osa', 'Os09g0570900' => 'osa', 'Peaxi162Scf00015g01614' => 'pax', 'Peaxi162Scf00145g00917' => 'pax', 'Peaxi162Scf00406g00136' => 'pax', 'Peaxi162Scf00466g00711' => 'pax', 'Peaxi162Scf00722g00420' => 'pax', 'PGR004G1572' => 'pgr', 'PGR004G2883' => 'pgr', 'PGR102G0440' => 'pgr', 'PGR142G1634' => 'pgr', 'PGSC0003DMG400003868' => 'stu', 'PGSC0003DMG400023521' => 'stu', 'PGSC0003DMG400045234' => 'stu', 'Phvul.001G180200' => 'pvu', 'Phvul.007G150800' => 'pvu', 'Phvul.008G013100' => 'pvu', 'Phvul.L003943' => 'pvu', 'Potri.001G237100' => 'ptr', 'Potri.001G442600' => 'ptr', 'Potri.008G033200' => 'ptr', 'Potri.008G052900' => 'ptr', 'Potri.010G207700' => 'ptr', 'Potri.010G228500' => 'ptr', 'Potri.011G154600' => 'ptr', 'Pp3c17_6970' => 'ppa', 'Pp3c1_25430' => 'ppa', 'Pp3c2_18030' => 'ppa', 'Pp3c5_11550' => 'ppa', 'Pp3c6_19000' => 'ppa', 'PRCOL_00006485' => 'pco', 'Prupe.2G207000' => 'ppe', 'Prupe.2G231900' => 'ppe', 'Prupe.6G081400' => 'ppe', 'Prupe.7G127300' => 'ppe', 'Psat3g182560' => 'psa', 'Psat6g074960' => 'psa', 'PSO339G1537' => 'pso', 'PSO339G2362' => 'pso', 'PSO339G3138' => 'pso', 'PSO339G3247' => 'pso', 'PSO648G0008' => 'pso', 'PSO801G0750' => 'pso', 'QL01p032945' => 'qlo', 'QL01p033003' => 'qlo', 'QL07p042843' => 'qlo', 'QL08p053857' => 'qlo', 'QL08p059081' => 'qlo', 'RcHm_v2.0_Chr1g0362321' => 'rch', 'RcHm_v2.0_Chr1g0366351' => 'rch', 'RcHm_v2.0_Chr2g0171731' => 'rch', 'RcHm_v2.0_Chr3g0470541' => 'rch', 'RcHm_v2.0_Chr4g0409571' => 'rch', 'RcHm_v2.0_Chr5g0063651' => 'rch', 'RcHm_v2.0_Chr7g0217131' => 'rch', 'Rhsim03G0089900' => 'rsi', 'Rhsim03G0132600' => 'rsi', 'Rhsim04G0142300' => 'rsi', 'Rhsim09G0147000' => 'rsi', 'Rhsim09G0164700' => 'rsi', 'Rhsim13G0085300' => 'rsi', 'Sabra08G0022000' => 'sbr', 'Sabra08G0038000' => 'sbr', 'Sabra10G0160300' => 'sbr', 'Sabra10G0177200' => 'sbr', 'Sabra11G0145000' => 'sbr', 'Sabra16G0142900' => 'sbr', 'SalBow2G1036' => 'sbo', 'SalBow3G1565' => 'sbo', 'SalBow3G3926' => 'sbo', 'SalBow5G4498' => 'sbo', 'SalBow5G4599' => 'sbo', 'SalBow6G4130' => 'sbo', 'Sc02g0001550' => 'sci', 'Sc06g0008240' => 'sci', 'Sed0005917' => 'sed', 'Sed0016686' => 'sed', 'Sed0021069' => 'sed', 'SGA_v2.0_scaffold224G42937' => 'sas', 'SGA_v2.0_scaffold75G24832' => 'sas', 'SHI05959' => 'shi', 'SHI05960' => 'shi', 'SMO118G0189' => 'smo', 'Solyc05g054620.4' => 'sly', 'Solyc09g008350.3' => 'sly', 'Sopen05g033100' => 'spe', 'Sopen09g003170' => 'spe', 'Sp4g19100' => 'spa', 'Sp4g21860' => 'spa', 'Sp5g15630' => 'spa', 'TAR362G0554' => 'tar', 'TAR369G0261' => 'tar', 'TAR369G0527' => 'tar', 'TAR369G0682' => 'tar', 'TAR623G1185' => 'tar', 'TAR633G0405' => 'tar', 'TAR633G1140' => 'tar', 'TAR636G3399' => 'tar', 'THA.LOC104807065' => 'tha', 'THA.LOC104810025' => 'tha', 'THA.LOC104810818' => 'tha', 'Thecc.05G069600' => 'tca', 'Thecc.09G325600' => 'tca', 'Thecc.10G046500' => 'tca', 'Thecc.10G086200' => 'tca', 'Thhalv10002542m.g' => 'esa', 'Thhalv10016601m.g' => 'esa', 'Thhalv10016727m.g' => 'esa', 'TPR.G15497' => 'tpr', 'TPR.G15515' => 'tpr', 'TPR.G31188' => 'tpr', 'TPR.G32808' => 'tpr', 'TPR.G34289' => 'tpr', 'TPR.G7090' => 'tpr', 'TWI15G1058' => 'twi', 'TWI38G0438' => 'twi', 'TWI74G1580' => 'twi', 'TWI75G1864' => 'twi', 'unitig_0.g2162' => 'ugi', 'unitig_26.g9237' => 'ugi', 'unitig_6.g29262' => 'ugi', 'unitig_747.g21425' => 'ugi', 'unitig_747.g21426' => 'ugi', 'unitig_8.g4115' => 'ugi', 'vmacro00555' => 'vma', 'vmacro03097' => 'vma', 'vmacro07159' => 'vma', 'vmacro07308' => 'vma', 'vmacro08786' => 'vma', 'vmacro09567' => 'vma', 'vmacro10247' => 'vma', 'VMungo0720G0671' => 'vmu', 'VMungo1080G0498' => 'vmu', 'VMungo1383G0672' => 'vmu', 'VMungo1383G2464' => 'vmu', 'VMungo1383G3135' => 'vmu', 'Zm00001eb095840' => 'zma', 'Zm00001eb266620' => 'zma', 'Zm00001eb302790' => 'zma', 'Zm00001eb307730' => 'zma', 'Zm00001eb355670' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001446', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001446' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001446', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001446' ) ), 'genes' => array( 'A04p28150' => 'bna', 'A04p30390' => 'bna', 'Aa31LG5G20050' => 'aar', 'Aa31LG5G22060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_240.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_241.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_306.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2241' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2255' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2682' => 'aag', 'Actinidia07719' => 'ach', 'Actinidia20858' => 'ach', 'Actinidia26656' => 'ach', 'Actinidia28915' => 'ach', 'Actinidia31323' => 'ach', 'Actinidia34800' => 'ach', 'Actinidia37216' => 'ach', 'Actinidia38876' => 'ach', 'Ah.08g219100' => 'amhyb', 'Ah.15g096910' => 'amhyb', 'AL4G33040' => 'aly', 'AL4G36980' => 'aly', 'AL5G20630' => 'aly', 'AL5G24610' => 'aly', 'Aqoxy1G01129' => 'aox', 'Aqoxy2G01710' => 'aox', 'Aqoxy2G02055' => 'aox', 'Aqoxy35s003' => 'aox', 'Aqoxy4G02978' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52ECNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EW6J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E47FLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K62C63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDI7S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PW8IDM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCL9IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8P42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFVJ5K' => 'arhy', 'AT2G36840' => 'ath', 'AT2G39570' => 'ath', 'ATR0559G170' => 'atr', 'ATR0723G066' => 'atr', 'Atru.chr12.499' => 'acertr', 'Atru.chr12.871' => 'acertr', 'Atru.chr3.3839' => 'acertr', 'Atru.chr8.1767' => 'acertr', 'AUR62001821' => 'cqu', 'AUR62009607' => 'cqu', 'AUR62026922' => 'cqu', 'AUR62042060' => 'cqu', 'BcaB05g23481' => 'bca', 'BcaB06g28956' => 'bca', 'BcaB06g29098' => 'bca', 'BcaC02g07393' => 'bca', 'BcaC02g07576' => 'bca', 'BcaC09g49724' => 'bca', 'BcaNung05999' => 'bca', 'BolC1t03304H' => 'bol', 'BolC4t28042H' => 'bol', 'BolC4t28241H' => 'bol', 'BraA04t18300Z' => 'bra', 'BraA04t18469Z' => 'bra', 'BraA05t19648Z' => 'bra', 'C01p33580' => 'bna', 'C04p65530' => 'bna', 'C04p67430' => 'bna', 'CAN.G1013.5' => 'can', 'CAN.G111.9' => 'can', 'CAN.G900.18' => 'can', 'CANSAT56G1216' => 'cansat', 'CANSAT80G1050' => 'cansat', 'CARHR131300' => 'chi', 'CARHR134440' => 'chi', 'CARHR154300' => 'chi', 'Carub.0004s1869' => 'cru', 'Carub.0004s2164' => 'cru', 'Carub.0005s1177' => 'cru', 'Ca_01338_v3' => 'car', 'Ca_07246_v3' => 'car', 'Ca_08890_v3' => 'car', 'Ca_08914_v3' => 'car', 'Ca_30641_v3' => 'car', 'CBR_g4757' => 'cbr', 'Cc01_g12510' => 'ccan', 'Cc02_g08120' => 'ccan', 'Cc02_g10810' => 'ccan', 'Cc06_g04410' => 'ccan', 'CDE04G1496' => 'cde', 'CDE07G0507' => 'cde', 'CDE08G0421' => 'cde', 'Cfa001503' => 'cfa', 'Cfa011468' => 'cfa', 'Cfa017636' => 'cfa', 'Ciclev10011863m.g' => 'ccl', 'Ciclev10028516m.g' => 'ccl', 'Ciclev10031651m.g' => 'ccl', 'Ciclev10031674m.g' => 'ccl', 'CiPaw.01G267700' => 'cil', 'CiPaw.02G182700' => 'cil', 'CiPaw.09G170500' => 'cil', 'CiPaw.13G097600' => 'cil', 'CiPaw.14G070900' => 'cil', 'ClCG05G021250' => 'cla', 'ClCG10G019990' => 'cla', 'COL.COLO4_14976' => 'col', 'COL.COLO4_26934' => 'col', 'COL.COLO4_36545' => 'col', 'COL.COLO4_36546' => 'col', 'Cpa.g.sc1.381' => 'cpa', 'Cpa.g.sc190.12' => 'cpa', 'Cpa.g.sc53.143' => 'cpa', 'Cpa.g.sc92.104' => 'cpa', 'CsaV3_3G036100' => 'csa', 'CsaV3_5G036020' => 'csa', 'CSS0000046' => 'camsi', 'CSS0021706' => 'camsi', 'CSS0025269' => 'camsi', 'CSS0026612' => 'camsi', 'CSS0033158' => 'camsi', 'CSS0036911' => 'camsi', 'CSS0037666' => 'camsi', 'CSS0039292' => 'camsi', 'DCAR_000321' => 'dca', 'DCAR_015006' => 'dca', 'DCAR_015191' => 'dca', 'Dinv31240' => 'din', 'Dinv31437' => 'din', 'Dinv32871' => 'din', 'Dinv35804' => 'din', 'Dinv36385' => 'din', 'Duzib106G1708' => 'dzi', 'Duzib114G0091' => 'dzi', 'Duzib114G0492' => 'dzi', 'Duzib128G0956' => 'dzi', 'Duzib168G0326' => 'dzi', 'Duzib170G0816' => 'dzi', 'ECA232G1816' => 'eca', 'ECA233G0169' => 'eca', 'ECA233G0628' => 'eca', 'ECA233G5045' => 'eca', 'ECA236G2343' => 'eca', 'ECA238G4227' => 'eca', 'ECA248G3498' => 'eca', 'EL10Ac7g15979' => 'bvu', 'EL10Ac7g16660' => 'bvu', 'Eucgr.A01656' => 'egr', 'Eucgr.B02387' => 'egr', 'Eucgr.G02875' => 'egr', 'Eucgr.J01053' => 'egr', 'FAN01G0167' => 'fan', 'FAN01G1708' => 'fan', 'FAN01G2390' => 'fan', 'FAN02G1496' => 'fan', 'FAN03G3478' => 'fan', 'FAN05G1514' => 'fan', 'FAN05G1827' => 'fan', 'FAN06G0428' => 'fan', 'FAN06G0816' => 'fan', 'FAN09G1279' => 'fan', 'FAN10G0715' => 'fan', 'FAN10G4120' => 'fan', 'FAN11G2055' => 'fan', 'FAN14G3893' => 'fan', 'FAN16G2077' => 'fan', 'FAN25G1939' => 'fan', 'FvH4_3g35480' => 'fve', 'FvH4_6g16600' => 'fve', 'FvH4_7g18540' => 'fve', 'FvH4_7g22000' => 'fve', 'Glyma.03G184800' => 'gma', 'Glyma.10G058600' => 'gma', 'Glyma.13G145400' => 'gma', 'Glyma.13G334400' => 'gma', 'Glyma.15G040100' => 'gma', 'Glyma.18G289000' => 'gma', 'Glyma.19G185300' => 'gma', 'Gohir.A01G213000' => 'ghi', 'Gohir.A03G039800' => 'ghi', 'Gohir.A04G071100' => 'ghi', 'Gohir.A09G145075' => 'ghi', 'Gohir.A10G201400' => 'ghi', 'Gohir.A13G019800' => 'ghi', 'Gohir.A13G228100' => 'ghi', 'Gohir.D01G201700' => 'ghi', 'Gohir.D03G128300' => 'ghi', 'Gohir.D04G109800' => 'ghi', 'Gohir.D09G141075' => 'ghi', 'Gohir.D10G209200' => 'ghi', 'Gohir.D13G020400' => 'ghi', 'Gohir.D13G233700' => 'ghi', 'Gorai.002G246400' => 'gra', 'Gorai.003G135000' => 'gra', 'Gorai.006G161800' => 'gra', 'Gorai.009G413900' => 'gra', 'Gorai.011G235300' => 'gra', 'Gorai.013G022700' => 'gra', 'Gorai.013G264500' => 'gra', 'GSVIVG01016191001' => 'vvi', 'GSVIVG01016193001' => 'vvi', 'GSVIVG01016580001' => 'vvi', 'GSVIVG01025006001' => 'vvi', 'GSVIVG01033664001' => 'vvi', 'HanXRQChr01g0027821' => 'han', 'HanXRQChr07g0201201' => 'han', 'HanXRQChr08g0220301' => 'han', 'HanXRQChr08g0220311' => 'han', 'HanXRQChr09g0248211' => 'han', 'HanXRQChr13g0400881' => 'han', 'HanXRQChr15g0496921' => 'han', 'Haze_16748' => 'cav', 'Haze_17039' => 'cav', 'Haze_20516' => 'cav', 'Haze_24054' => 'cav', 'Hma1.2p1_0145F.1_g065250' => 'hma', 'Hma1.2p1_0533F.1_g173620' => 'hma', 'Hma1.2p1_0828F.1_g225180' => 'hma', 'HPP92_006605' => 'vpl', 'HPP92_025765' => 'vpl', 'HPP92_026748' => 'vpl', 'Hund04988' => 'sun', 'Hund18926' => 'sun', 'Lalb_Chr01g0018641' => 'lal', 'Lalb_Chr02g0155601' => 'lal', 'Lalb_Chr04g0257811' => 'lal', 'Lalb_Chr19g0129401' => 'lal', 'Lalb_Chr25g0288911' => 'lal', 'Lj1g0002900' => 'lja', 'Lj1g0025366' => 'lja', 'Lj2A22T69' => 'lonja', 'Lj2C1057T17' => 'lonja', 'Lj2C119T13' => 'lonja', 'Lj3C987T3' => 'lonja', 'Lj3C988T7' => 'lonja', 'Lj3g0017993' => 'lja', 'Lj5g0006802' => 'lja', 'Lj8A86T51' => 'lonja', 'Lsat_1_v5_gn_1_51541' => 'lsa', 'Lsat_1_v5_gn_2_116501' => 'lsa', 'Lsat_1_v5_gn_5_53221' => 'lsa', 'Lsat_1_v5_gn_6_24401' => 'lsa', 'Lsat_1_v5_gn_8_16721' => 'lsa', 'Lsat_1_v5_gn_8_77941' => 'lsa', 'Lsat_1_v5_gn_9_65181' => 'lsa', 'Lsat_1_v5_gn_9_69620' => 'lsa', 'Manes.04G032500' => 'mes', 'Manes.08G011700' => 'mes', 'Manes.09G065100' => 'mes', 'Manes.10G032700' => 'mes', 'Mapoly0014s0151' => 'mpo', 'MBI14_g11675_MAGBIO' => 'mbi', 'MBI14_g40212_MAGBIO' => 'mbi', 'MBI17_g17639_MAGBIO' => 'mbi', 'MBI18_g42051_MAGBIO' => 'mbi', 'MCO08G223' => 'mco', 'MD01G1101800' => 'mdo', 'MD01G1124500' => 'mdo', 'MD04G1090700' => 'mdo', 'MD07G1168400' => 'mdo', 'MD07G1194400' => 'mdo', 'MD11G1143600' => 'mdo', 'MD12G1108700' => 'mdo', 'Medtr1g062980' => 'mtr', 'Medtr2g096640' => 'mtr', 'Medtr7g024320' => 'mtr', 'Medtr7g102330' => 'mtr', 'Medtr7g102350' => 'mtr', 'MELO3C009370.2' => 'cme', 'MELO3C012402.2' => 'cme', 'Migut.F01707' => 'egut', 'Migut.J00642' => 'egut', 'Migut.L01715' => 'egut', 'Migut.N02666' => 'egut', 'MSTRG.12641' => 'ama', 'MSTRG.26681' => 'ama', 'MSTRG.5770' => 'ama', 'MSTRG.8128' => 'ama', 'Nitab4.5_0000070g0190' => 'nta', 'Nitab4.5_0000070g0200' => 'nta', 'Nitab4.5_0000610g0040' => 'nta', 'Nitab4.5_0000610g0140' => 'nta', 'Nitab4.5_0001831g0120' => 'nta', 'Nitab4.5_0003782g0050' => 'nta', 'Nitab4.5_0004476g0030' => 'nta', 'Nitab4.5_0005019g0060' => 'nta', 'Nitab4.5_0006342g0020' => 'nta', 'Nitab4.5_0006672g0010' => 'nta', 'Nn2g10417' => 'nnu', 'Nn2g12810' => 'nnu', 'Nn2g13832' => 'nnu', 'Nn6g35254' => 'nnu', 'Oeu005032.1' => 'oeu', 'Oeu034492.1' => 'oeu', 'Oeu041485.1' => 'oeu', 'Oeu045235.2' => 'oeu', 'Os05g0113000' => 'osa', 'Os09g0570900' => 'osa', 'Peaxi162Scf00015g01614' => 'pax', 'Peaxi162Scf00145g00917' => 'pax', 'Peaxi162Scf00406g00136' => 'pax', 'Peaxi162Scf00466g00711' => 'pax', 'Peaxi162Scf00722g00420' => 'pax', 'PGR004G1572' => 'pgr', 'PGR004G2883' => 'pgr', 'PGR102G0440' => 'pgr', 'PGR142G1634' => 'pgr', 'PGSC0003DMG400003868' => 'stu', 'PGSC0003DMG400023521' => 'stu', 'PGSC0003DMG400045234' => 'stu', 'Phvul.001G180200' => 'pvu', 'Phvul.007G150800' => 'pvu', 'Phvul.008G013100' => 'pvu', 'Phvul.L003943' => 'pvu', 'Potri.001G237100' => 'ptr', 'Potri.001G442600' => 'ptr', 'Potri.008G033200' => 'ptr', 'Potri.008G052900' => 'ptr', 'Potri.010G207700' => 'ptr', 'Potri.010G228500' => 'ptr', 'Potri.011G154600' => 'ptr', 'Pp3c17_6970' => 'ppa', 'Pp3c1_25430' => 'ppa', 'Pp3c2_18030' => 'ppa', 'Pp3c5_11550' => 'ppa', 'Pp3c6_19000' => 'ppa', 'PRCOL_00006485' => 'pco', 'Prupe.2G207000' => 'ppe', 'Prupe.2G231900' => 'ppe', 'Prupe.6G081400' => 'ppe', 'Prupe.7G127300' => 'ppe', 'Psat3g182560' => 'psa', 'Psat6g074960' => 'psa', 'PSO339G1537' => 'pso', 'PSO339G2362' => 'pso', 'PSO339G3138' => 'pso', 'PSO339G3247' => 'pso', 'PSO648G0008' => 'pso', 'PSO801G0750' => 'pso', 'QL01p032945' => 'qlo', 'QL01p033003' => 'qlo', 'QL07p042843' => 'qlo', 'QL08p053857' => 'qlo', 'QL08p059081' => 'qlo', 'RcHm_v2.0_Chr1g0362321' => 'rch', 'RcHm_v2.0_Chr1g0366351' => 'rch', 'RcHm_v2.0_Chr2g0171731' => 'rch', 'RcHm_v2.0_Chr3g0470541' => 'rch', 'RcHm_v2.0_Chr4g0409571' => 'rch', 'RcHm_v2.0_Chr5g0063651' => 'rch', 'RcHm_v2.0_Chr7g0217131' => 'rch', 'Rhsim03G0089900' => 'rsi', 'Rhsim03G0132600' => 'rsi', 'Rhsim04G0142300' => 'rsi', 'Rhsim09G0147000' => 'rsi', 'Rhsim09G0164700' => 'rsi', 'Rhsim13G0085300' => 'rsi', 'Sabra08G0022000' => 'sbr', 'Sabra08G0038000' => 'sbr', 'Sabra10G0160300' => 'sbr', 'Sabra10G0177200' => 'sbr', 'Sabra11G0145000' => 'sbr', 'Sabra16G0142900' => 'sbr', 'SalBow2G1036' => 'sbo', 'SalBow3G1565' => 'sbo', 'SalBow3G3926' => 'sbo', 'SalBow5G4498' => 'sbo', 'SalBow5G4599' => 'sbo', 'SalBow6G4130' => 'sbo', 'Sc02g0001550' => 'sci', 'Sc06g0008240' => 'sci', 'Sed0005917' => 'sed', 'Sed0016686' => 'sed', 'Sed0021069' => 'sed', 'SGA_v2.0_scaffold224G42937' => 'sas', 'SGA_v2.0_scaffold75G24832' => 'sas', 'SHI05959' => 'shi', 'SHI05960' => 'shi', 'SMO118G0189' => 'smo', 'Solyc05g054620.4' => 'sly', 'Solyc09g008350.3' => 'sly', 'Sopen05g033100' => 'spe', 'Sopen09g003170' => 'spe', 'Sp4g19100' => 'spa', 'Sp4g21860' => 'spa', 'Sp5g15630' => 'spa', 'TAR362G0554' => 'tar', 'TAR369G0261' => 'tar', 'TAR369G0527' => 'tar', 'TAR369G0682' => 'tar', 'TAR623G1185' => 'tar', 'TAR633G0405' => 'tar', 'TAR633G1140' => 'tar', 'TAR636G3399' => 'tar', 'THA.LOC104807065' => 'tha', 'THA.LOC104810025' => 'tha', 'THA.LOC104810818' => 'tha', 'Thecc.05G069600' => 'tca', 'Thecc.09G325600' => 'tca', 'Thecc.10G046500' => 'tca', 'Thecc.10G086200' => 'tca', 'Thhalv10002542m.g' => 'esa', 'Thhalv10016601m.g' => 'esa', 'Thhalv10016727m.g' => 'esa', 'TPR.G15497' => 'tpr', 'TPR.G15515' => 'tpr', 'TPR.G31188' => 'tpr', 'TPR.G32808' => 'tpr', 'TPR.G34289' => 'tpr', 'TPR.G7090' => 'tpr', 'TWI15G1058' => 'twi', 'TWI38G0438' => 'twi', 'TWI74G1580' => 'twi', 'TWI75G1864' => 'twi', 'unitig_0.g2162' => 'ugi', 'unitig_26.g9237' => 'ugi', 'unitig_6.g29262' => 'ugi', 'unitig_747.g21425' => 'ugi', 'unitig_747.g21426' => 'ugi', 'unitig_8.g4115' => 'ugi', 'vmacro00555' => 'vma', 'vmacro03097' => 'vma', 'vmacro07159' => 'vma', 'vmacro07308' => 'vma', 'vmacro08786' => 'vma', 'vmacro09567' => 'vma', 'vmacro10247' => 'vma', 'VMungo0720G0671' => 'vmu', 'VMungo1080G0498' => 'vmu', 'VMungo1383G0672' => 'vmu', 'VMungo1383G2464' => 'vmu', 'VMungo1383G3135' => 'vmu', 'Zm00001eb095840' => 'zma', 'Zm00001eb266620' => 'zma', 'Zm00001eb302790' => 'zma', 'Zm00001eb307730' => 'zma', 'Zm00001eb355670' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001446' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001446' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001446' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001446' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151