Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p28150 Brassica napus
A04p30390 Brassica napus
Aa31LG5G20050 Aethionema arabicum
Aa31LG5G22060 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_240.4 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_241.5 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_306.6 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.508 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2241 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2255 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2682 Anthoceros agrestis
Actinidia07719 Actinidia chinensis
Actinidia20858 Actinidia chinensis
Actinidia26656 Actinidia chinensis
Actinidia28915 Actinidia chinensis
Actinidia31323 Actinidia chinensis
Actinidia34800 Actinidia chinensis
Actinidia37216 Actinidia chinensis
Actinidia38876 Actinidia chinensis
Ah.08g219100 Amaranthus hybridus
Ah.15g096910 Amaranthus hybridus
AL4G33040 Arabidopsis lyrata
AL4G36980 Arabidopsis lyrata
AL5G20630 Arabidopsis lyrata
AL5G24610 Arabidopsis lyrata
Aqoxy1G01129 Aquilegia oxysepala
Aqoxy2G01710 Aquilegia oxysepala
Aqoxy2G02055 Aquilegia oxysepala
Aqoxy35s003 Aquilegia oxysepala
Aqoxy4G02978 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.52ECNB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5EW6J1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E47FLX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K62C63 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NDI7S1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PW8IDM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QCL9IC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QI8P42 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TFVJ5K Arachis hypogaea
AT2G36840 Arabidopsis thaliana
AT2G39570 Arabidopsis thaliana
ATR0559G170 Amborella trichopoda
ATR0723G066 Amborella trichopoda
Atru.chr12.499 Acer truncatum
Atru.chr12.871 Acer truncatum
Atru.chr3.3839 Acer truncatum
Atru.chr8.1767 Acer truncatum
AUR62001821 Chenopodium quinoa
AUR62009607 Chenopodium quinoa
AUR62026922 Chenopodium quinoa
AUR62042060 Chenopodium quinoa
BcaB05g23481 Brassica carinata
BcaB06g28956 Brassica carinata
BcaB06g29098 Brassica carinata
BcaC02g07393 Brassica carinata
BcaC02g07576 Brassica carinata
BcaC09g49724 Brassica carinata
BcaNung05999 Brassica carinata
BolC1t03304H Brassica oleracea
BolC4t28042H Brassica oleracea
BolC4t28241H Brassica oleracea
BraA04t18300Z Brassica rapa
BraA04t18469Z Brassica rapa
BraA05t19648Z Brassica rapa
C01p33580 Brassica napus
C04p65530 Brassica napus
C04p67430 Brassica napus
CAN.G1013.5 Capsicum annuum
CAN.G111.9 Capsicum annuum
CAN.G900.18 Capsicum annuum
CANSAT56G1216 Cannabis sativa
CANSAT80G1050 Cannabis sativa
CARHR131300 Cardamine hirsuta
CARHR134440 Cardamine hirsuta
CARHR154300 Cardamine hirsuta
Carub.0004s1869 Capsella rubella
Carub.0004s2164 Capsella rubella
Carub.0005s1177 Capsella rubella
Ca_01338_v3 Cicer arietinum L.
Ca_07246_v3 Cicer arietinum L.
Ca_08890_v3 Cicer arietinum L.
Ca_08914_v3 Cicer arietinum L.
Ca_30641_v3 Cicer arietinum L.
CBR_g4757 Chara braunii
Cc01_g12510 Coffea canephora
Cc02_g08120 Coffea canephora
Cc02_g10810 Coffea canephora
Cc06_g04410 Coffea canephora
CDE04G1496 Ceratophyllum demersum
CDE07G0507 Ceratophyllum demersum
CDE08G0421 Ceratophyllum demersum
Cfa001503 Carpinus fangiana
Cfa011468 Carpinus fangiana
Cfa017636 Carpinus fangiana
Ciclev10011863m.g Citrus clementina
Ciclev10028516m.g Citrus clementina
Ciclev10031651m.g Citrus clementina
Ciclev10031674m.g Citrus clementina
CiPaw.01G267700 Carya illinoinensis
CiPaw.02G182700 Carya illinoinensis
CiPaw.09G170500 Carya illinoinensis
CiPaw.13G097600 Carya illinoinensis
CiPaw.14G070900 Carya illinoinensis
ClCG05G021250 Citrullus lanatus
ClCG10G019990 Citrullus lanatus
COL.COLO4_14976 Corchorus olitorius
COL.COLO4_26934 Corchorus olitorius
COL.COLO4_36545 Corchorus olitorius
COL.COLO4_36546 Corchorus olitorius
Cpa.g.sc1.381 Carica papaya
Cpa.g.sc190.12 Carica papaya
Cpa.g.sc53.143 Carica papaya
Cpa.g.sc92.104 Carica papaya
CsaV3_3G036100 Cucumis sativus L.
CsaV3_5G036020 Cucumis sativus L.
CSS0000046 Camellia sinensis var. sinensis
CSS0021706 Camellia sinensis var. sinensis
CSS0025269 Camellia sinensis var. sinensis
CSS0026612 Camellia sinensis var. sinensis
CSS0033158 Camellia sinensis var. sinensis
CSS0036911 Camellia sinensis var. sinensis
CSS0037666 Camellia sinensis var. sinensis
CSS0039292 Camellia sinensis var. sinensis
DCAR_000321 Daucus carota
DCAR_015006 Daucus carota
DCAR_015191 Daucus carota
Dinv31240 Davidia involucrata
Dinv31437 Davidia involucrata
Dinv32871 Davidia involucrata
Dinv35804 Davidia involucrata
Dinv36385 Davidia involucrata
Duzib106G1708 Durio zibethinus
Duzib114G0091 Durio zibethinus
Duzib114G0492 Durio zibethinus
Duzib128G0956 Durio zibethinus
Duzib168G0326 Durio zibethinus
Duzib170G0816 Durio zibethinus
ECA232G1816 Erigeron canadensis
ECA233G0169 Erigeron canadensis
ECA233G0628 Erigeron canadensis
ECA233G5045 Erigeron canadensis
ECA236G2343 Erigeron canadensis
ECA238G4227 Erigeron canadensis
ECA248G3498 Erigeron canadensis
EL10Ac7g15979 Beta vulgaris
EL10Ac7g16660 Beta vulgaris
Eucgr.A01656 Eucalyptus grandis
Eucgr.B02387 Eucalyptus grandis
Eucgr.G02875 Eucalyptus grandis
Eucgr.J01053 Eucalyptus grandis
FAN01G0167 Fragaria x ananassa
FAN01G1708 Fragaria x ananassa
FAN01G2390 Fragaria x ananassa
FAN02G1496 Fragaria x ananassa
FAN03G3478 Fragaria x ananassa
FAN05G1514 Fragaria x ananassa
FAN05G1827 Fragaria x ananassa
FAN06G0428 Fragaria x ananassa
FAN06G0816 Fragaria x ananassa
FAN09G1279 Fragaria x ananassa
FAN10G0715 Fragaria x ananassa
FAN10G4120 Fragaria x ananassa
FAN11G2055 Fragaria x ananassa
FAN14G3893 Fragaria x ananassa
FAN16G2077 Fragaria x ananassa
FAN25G1939 Fragaria x ananassa
FvH4_3g35480 Fragaria vesca
FvH4_6g16600 Fragaria vesca
FvH4_7g18540 Fragaria vesca
FvH4_7g22000 Fragaria vesca
Glyma.03G184800 Glycine max
Glyma.10G058600 Glycine max
Glyma.13G145400 Glycine max
Glyma.13G334400 Glycine max
Glyma.15G040100 Glycine max
Glyma.18G289000 Glycine max
Glyma.19G185300 Glycine max
Gohir.A01G213000 Gossypium hirsutum
Gohir.A03G039800 Gossypium hirsutum
Gohir.A04G071100 Gossypium hirsutum
Gohir.A09G145075 Gossypium hirsutum
Gohir.A10G201400 Gossypium hirsutum
Gohir.A13G019800 Gossypium hirsutum
Gohir.A13G228100 Gossypium hirsutum
Gohir.D01G201700 Gossypium hirsutum
Gohir.D03G128300 Gossypium hirsutum
Gohir.D04G109800 Gossypium hirsutum
Gohir.D09G141075 Gossypium hirsutum
Gohir.D10G209200 Gossypium hirsutum
Gohir.D13G020400 Gossypium hirsutum
Gohir.D13G233700 Gossypium hirsutum
Gorai.002G246400 Gossypium raimondii
Gorai.003G135000 Gossypium raimondii
Gorai.006G161800 Gossypium raimondii
Gorai.009G413900 Gossypium raimondii
Gorai.011G235300 Gossypium raimondii
Gorai.013G022700 Gossypium raimondii
Gorai.013G264500 Gossypium raimondii
GSVIVG01016191001 Vitis vinifera
GSVIVG01016193001 Vitis vinifera
GSVIVG01016580001 Vitis vinifera
GSVIVG01025006001 Vitis vinifera
GSVIVG01033664001 Vitis vinifera
HanXRQChr01g0027821 Helianthus annuus
HanXRQChr07g0201201 Helianthus annuus
HanXRQChr08g0220301 Helianthus annuus
HanXRQChr08g0220311 Helianthus annuus
HanXRQChr09g0248211 Helianthus annuus
HanXRQChr13g0400881 Helianthus annuus
HanXRQChr15g0496921 Helianthus annuus
Haze_16748 Corylus avellana
Haze_17039 Corylus avellana
Haze_20516 Corylus avellana
Haze_24054 Corylus avellana
Hma1.2p1_0145F.1_g065250 Hydrangea macrophylla
Hma1.2p1_0533F.1_g173620 Hydrangea macrophylla
Hma1.2p1_0828F.1_g225180 Hydrangea macrophylla
HPP92_006605 Vanilla planifolia
HPP92_025765 Vanilla planifolia
HPP92_026748 Vanilla planifolia
Hund04988 Selenicereus undatus
Hund18926 Selenicereus undatus
Lalb_Chr01g0018641 Lupinus albus
Lalb_Chr02g0155601 Lupinus albus
Lalb_Chr04g0257811 Lupinus albus
Lalb_Chr19g0129401 Lupinus albus
Lalb_Chr25g0288911 Lupinus albus
Lj1g0002900 Lotus japonicus
Lj1g0025366 Lotus japonicus
Lj2A22T69 Lonicera japonica
Lj2C1057T17 Lonicera japonica
Lj2C119T13 Lonicera japonica
Lj3C987T3 Lonicera japonica
Lj3C988T7 Lonicera japonica
Lj3g0017993 Lotus japonicus
Lj5g0006802 Lotus japonicus
Lj8A86T51 Lonicera japonica
Lsat_1_v5_gn_1_51541 Lactuca sativa
Lsat_1_v5_gn_2_116501 Lactuca sativa
Lsat_1_v5_gn_5_53221 Lactuca sativa
Lsat_1_v5_gn_6_24401 Lactuca sativa
Lsat_1_v5_gn_8_16721 Lactuca sativa
Lsat_1_v5_gn_8_77941 Lactuca sativa
Lsat_1_v5_gn_9_65181 Lactuca sativa
Lsat_1_v5_gn_9_69620 Lactuca sativa
Manes.04G032500 Manihot esculenta
Manes.08G011700 Manihot esculenta
Manes.09G065100 Manihot esculenta
Manes.10G032700 Manihot esculenta
Mapoly0014s0151 Marchantia polymorpha
MBI14_g11675_MAGBIO Magnolia biondii
MBI14_g40212_MAGBIO Magnolia biondii
MBI17_g17639_MAGBIO Magnolia biondii
MBI18_g42051_MAGBIO Magnolia biondii
MCO08G223 Micromonas commoda
MD01G1101800 Malus domestica
MD01G1124500 Malus domestica
MD04G1090700 Malus domestica
MD07G1168400 Malus domestica
MD07G1194400 Malus domestica
MD11G1143600 Malus domestica
MD12G1108700 Malus domestica
Medtr1g062980 Medicago truncatula
Medtr2g096640 Medicago truncatula
Medtr7g024320 Medicago truncatula
Medtr7g102330 Medicago truncatula
Medtr7g102350 Medicago truncatula
MELO3C009370.2 Cucumis melo
MELO3C012402.2 Cucumis melo
Migut.F01707 Erythranthe guttata
Migut.J00642 Erythranthe guttata
Migut.L01715 Erythranthe guttata
Migut.N02666 Erythranthe guttata
MSTRG.12641 Avicennia marina
MSTRG.26681 Avicennia marina
MSTRG.5770 Avicennia marina
MSTRG.8128 Avicennia marina
Nitab4.5_0000070g0190 Nicotiana tabacum
Nitab4.5_0000070g0200 Nicotiana tabacum
Nitab4.5_0000610g0040 Nicotiana tabacum
Nitab4.5_0000610g0140 Nicotiana tabacum
Nitab4.5_0001831g0120 Nicotiana tabacum
Nitab4.5_0003782g0050 Nicotiana tabacum
Nitab4.5_0004476g0030 Nicotiana tabacum
Nitab4.5_0005019g0060 Nicotiana tabacum
Nitab4.5_0006342g0020 Nicotiana tabacum
Nitab4.5_0006672g0010 Nicotiana tabacum
Nn2g10417 Nelumbo nucifera
Nn2g12810 Nelumbo nucifera
Nn2g13832 Nelumbo nucifera
Nn6g35254 Nelumbo nucifera
Oeu005032.1 Olea europaea
Oeu034492.1 Olea europaea
Oeu041485.1 Olea europaea
Oeu045235.2 Olea europaea
Os05g0113000 Oryza sativa ssp. japonica
Os09g0570900 Oryza sativa ssp. japonica
Peaxi162Scf00015g01614 Petunia axillaris
Peaxi162Scf00145g00917 Petunia axillaris
Peaxi162Scf00406g00136 Petunia axillaris
Peaxi162Scf00466g00711 Petunia axillaris
Peaxi162Scf00722g00420 Petunia axillaris
PGR004G1572 Punica granatum
PGR004G2883 Punica granatum
PGR102G0440 Punica granatum
PGR142G1634 Punica granatum
PGSC0003DMG400003868 Solanum tuberosum
PGSC0003DMG400023521 Solanum tuberosum
PGSC0003DMG400045234 Solanum tuberosum
Phvul.001G180200 Phaseolus vulgaris
Phvul.007G150800 Phaseolus vulgaris
Phvul.008G013100 Phaseolus vulgaris
Phvul.L003943 Phaseolus vulgaris
Potri.001G237100 Populus trichocarpa
Potri.001G442600 Populus trichocarpa
Potri.008G033200 Populus trichocarpa
Potri.008G052900 Populus trichocarpa
Potri.010G207700 Populus trichocarpa
Potri.010G228500 Populus trichocarpa
Potri.011G154600 Populus trichocarpa
Pp3c17_6970 Physcomitrium patens
Pp3c1_25430 Physcomitrium patens
Pp3c2_18030 Physcomitrium patens
Pp3c5_11550 Physcomitrium patens
Pp3c6_19000 Physcomitrium patens
PRCOL_00006485 Prasinoderma coloniale
Prupe.2G207000 Prunus persica
Prupe.2G231900 Prunus persica
Prupe.6G081400 Prunus persica
Prupe.7G127300 Prunus persica
Psat3g182560 Pisum sativum
Psat6g074960 Pisum sativum
PSO339G1537 Papaver somniferum
PSO339G2362 Papaver somniferum
PSO339G3138 Papaver somniferum
PSO339G3247 Papaver somniferum
PSO648G0008 Papaver somniferum
PSO801G0750 Papaver somniferum
QL01p032945 Quercus lobata
QL01p033003 Quercus lobata
QL07p042843 Quercus lobata
QL08p053857 Quercus lobata
QL08p059081 Quercus lobata
RcHm_v2.0_Chr1g0362321 Rosa chinensis
RcHm_v2.0_Chr1g0366351 Rosa chinensis
RcHm_v2.0_Chr2g0171731 Rosa chinensis
RcHm_v2.0_Chr3g0470541 Rosa chinensis
RcHm_v2.0_Chr4g0409571 Rosa chinensis
RcHm_v2.0_Chr5g0063651 Rosa chinensis
RcHm_v2.0_Chr7g0217131 Rosa chinensis
Rhsim03G0089900 Rhododendron simsii
Rhsim03G0132600 Rhododendron simsii
Rhsim04G0142300 Rhododendron simsii
Rhsim09G0147000 Rhododendron simsii
Rhsim09G0164700 Rhododendron simsii
Rhsim13G0085300 Rhododendron simsii
Sabra08G0022000 Salix brachista
Sabra08G0038000 Salix brachista
Sabra10G0160300 Salix brachista
Sabra10G0177200 Salix brachista
Sabra11G0145000 Salix brachista
Sabra16G0142900 Salix brachista
SalBow2G1036 Salvia bowleyana
SalBow3G1565 Salvia bowleyana
SalBow3G3926 Salvia bowleyana
SalBow5G4498 Salvia bowleyana
SalBow5G4599 Salvia bowleyana
SalBow6G4130 Salvia bowleyana
Sc02g0001550 Simmondsia chinensis
Sc06g0008240 Simmondsia chinensis
Sed0005917 Sechium edule
Sed0016686 Sechium edule
Sed0021069 Sechium edule
SGA_v2.0_scaffold224G42937 Striga asiatica
SGA_v2.0_scaffold75G24832 Striga asiatica
SHI05959 Sapria himalayana
SHI05960 Sapria himalayana
SMO118G0189 Selaginella moellendorffii
Solyc05g054620.4 Solanum lycopersicum
Solyc09g008350.3 Solanum lycopersicum
Sopen05g033100 Solanum pennellii
Sopen09g003170 Solanum pennellii
Sp4g19100 Schrenkiella parvula
Sp4g21860 Schrenkiella parvula
Sp5g15630 Schrenkiella parvula
TAR362G0554 Trochodendron aralioides
TAR369G0261 Trochodendron aralioides
TAR369G0527 Trochodendron aralioides
TAR369G0682 Trochodendron aralioides
TAR623G1185 Trochodendron aralioides
TAR633G0405 Trochodendron aralioides
TAR633G1140 Trochodendron aralioides
TAR636G3399 Trochodendron aralioides
THA.LOC104807065 Tarenaya hassleriana
THA.LOC104810025 Tarenaya hassleriana
THA.LOC104810818 Tarenaya hassleriana
Thecc.05G069600 Theobroma cacao
Thecc.09G325600 Theobroma cacao
Thecc.10G046500 Theobroma cacao
Thecc.10G086200 Theobroma cacao
Thhalv10002542m.g Eutrema salsugineum
Thhalv10016601m.g Eutrema salsugineum
Thhalv10016727m.g Eutrema salsugineum
TPR.G15497 Trifolium pratense
TPR.G15515 Trifolium pratense
TPR.G31188 Trifolium pratense
TPR.G32808 Trifolium pratense
TPR.G34289 Trifolium pratense
TPR.G7090 Trifolium pratense
TWI15G1058 Tripterygium wilfordii
TWI38G0438 Tripterygium wilfordii
TWI74G1580 Tripterygium wilfordii
TWI75G1864 Tripterygium wilfordii
unitig_0.g2162 Utricularia gibba
unitig_26.g9237 Utricularia gibba
unitig_6.g29262 Utricularia gibba
unitig_747.g21425 Utricularia gibba
unitig_747.g21426 Utricularia gibba
unitig_8.g4115 Utricularia gibba
vmacro00555 Vaccinium macrocarpon
vmacro03097 Vaccinium macrocarpon
vmacro07159 Vaccinium macrocarpon
vmacro07308 Vaccinium macrocarpon
vmacro08786 Vaccinium macrocarpon
vmacro09567 Vaccinium macrocarpon
vmacro10247 Vaccinium macrocarpon
VMungo0720G0671 Vigna mungo
VMungo1080G0498 Vigna mungo
VMungo1383G0672 Vigna mungo
VMungo1383G2464 Vigna mungo
VMungo1383G3135 Vigna mungo
Zm00001eb095840 Zea mays
Zm00001eb266620 Zea mays
Zm00001eb302790 Zea mays
Zm00001eb307730 Zea mays
Zm00001eb355670 Zea mays

User provided reference genes

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