Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001441', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p28040' => 'bna', 'A03p07120' => 'bna', 'A03p26780' => 'bna', 'A05p44880' => 'bna', 'A10p23510' => 'bna', 'Aa31LG11G14180' => 'aar', 'Aa31LG5G12550' => 'aar', 'Aa31LG5G8430' => 'aar', 'Aa31LG7G570' => 'aar', 'Actinidia01958' => 'ach', 'Actinidia01959' => 'ach', 'Actinidia06111' => 'ach', 'Actinidia06112' => 'ach', 'Ah.03g140020' => 'amhyb', 'Ah.06g193980' => 'amhyb', 'Ah.10g031860' => 'amhyb', 'Ah.12g062500' => 'amhyb', 'AL3G11190' => 'aly', 'AL4G20570' => 'aly', 'AL6G26230' => 'aly', 'AL9U11630' => 'aly', 'Aqoxy3G00468' => 'aox', 'Aqoxy3G00469' => 'aox', 'Aqoxy3G03524' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7Y0VRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P32VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLF82K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECN0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6LI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYRN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1LFEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJF7LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB99CZ' => 'arhy', 'AT2G27035' => 'ath', 'AT3G01070' => 'ath', 'AT4G12880' => 'ath', 'AT5G15350' => 'ath', 'ATR0580G049' => 'atr', 'ATR0730G065' => 'atr', 'ATR0730G141' => 'atr', 'Atru.chr1.1413' => 'acertr', 'Atru.chr1.2794' => 'acertr', 'Atru.chr8.355' => 'acertr', 'AUR62011464' => 'cqu', 'AUR62016591' => 'cqu', 'AUR62018126' => 'cqu', 'AUR62034459' => 'cqu', 'BcaB01g03039' => 'bca', 'BcaB01g05058' => 'bca', 'BcaB01g05062' => 'bca', 'BcaB07g30555' => 'bca', 'BcaC01g04921' => 'bca', 'BcaC03g13552' => 'bca', 'BcaC03g16605' => 'bca', 'BcaC04g24241' => 'bca', 'BcaC05g30320' => 'bca', 'BcaC05g30377' => 'bca', 'BcaC09g47680' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00060' => 'bna', 'BolC1t05924H' => 'bol', 'BolC2t10471H' => 'bol', 'BolC3t13308H' => 'bol', 'BolC3t15552H' => 'bol', 'BraA01t04635Z' => 'bra', 'BraA02t07842Z' => 'bra', 'BraA03t10034Z' => 'bra', 'BraA03t11889Z' => 'bra', 'BraA05t23169Z' => 'bra', 'C02p44340' => 'bna', 'C03p08110' => 'bna', 'C03p32090' => 'bna', 'C09p61740' => 'bna', 'C09p75460' => 'bna', 'CAN.G206.186' => 'can', 'CAN.G206.187' => 'can', 'CAN.G206.188' => 'can', 'CAN.G407.5' => 'can', 'CAN.G471.2' => 'can', 'CAN.G521.9' => 'can', 'CANSAT54G1924' => 'cansat', 'CANSAT54G2915' => 'cansat', 'CANSAT56G0770' => 'cansat', 'CANSAT64G1363' => 'cansat', 'CANSAT64G1417' => 'cansat', 'CARHR076000' => 'chi', 'CARHR119330' => 'chi', 'CARHR197940' => 'chi', 'Carub.0001s4155' => 'cru', 'Carub.0003s0110' => 'cru', 'Carub.0004s0752' => 'cru', 'Carub.0006s1354' => 'cru', 'Carub.0007s2990' => 'cru', 'Ca_04861_v3' => 'car', 'Ca_06161_v3' => 'car', 'Cc07_g03740' => 'ccan', 'Cc07_g03750' => 'ccan', 'CDE02G1753' => 'cde', 'CDE05G1009' => 'cde', 'CDE11G1175' => 'cde', 'Cfa001874' => 'cfa', 'Cfa007605' => 'cfa', 'Cfa010265' => 'cfa', 'Ciclev10012903m.g' => 'ccl', 'Ciclev10012929m.g' => 'ccl', 'Ciclev10016919m.g' => 'ccl', 'Ciclev10026582m.g' => 'ccl', 'CiPaw.01G255300' => 'cil', 'CiPaw.03G021000' => 'cil', 'CiPaw.04G013900' => 'cil', 'CiPaw.04G014000' => 'cil', 'CiPaw.14G090700' => 'cil', 'ClCG03G014080' => 'cla', 'ClCG10G012890' => 'cla', 'ClCG10G015480' => 'cla', 'ClCG10G015490' => 'cla', 'COL.COLO4_12244' => 'col', 'COL.COLO4_12245' => 'col', 'COL.COLO4_18351' => 'col', 'COL.COLO4_18354' => 'col', 'COL.COLO4_26736' => 'col', 'Cpa.g.sc10.61' => 'cpa', 'CsaV3_1G042160' => 'csa', 'CsaV3_3G032750' => 'csa', 'CsaV3_3G040980' => 'csa', 'CsaV3_3G040990' => 'csa', 'CSS0032145' => 'camsi', 'CSS0032460' => 'camsi', 'CSS0049769' => 'camsi', 'DCAR_011069' => 'dca', 'DCAR_021664' => 'dca', 'DCAR_025560' => 'dca', 'Dinv21415' => 'din', 'Dinv24002' => 'din', 'Dinv33797' => 'din', 'Duzib147G0324' => 'dzi', 'Duzib147G1600' => 'dzi', 'Duzib150G0154' => 'dzi', 'Duzib168G1282' => 'dzi', 'Duzib187G0668' => 'dzi', 'Duzib235G1424' => 'dzi', 'ECA232G0881' => 'eca', 'ECA232G3133' => 'eca', 'EL10Ac2g03037' => 'bvu', 'EL10Ac4g08364' => 'bvu', 'EL10Ac4g10220' => 'bvu', 'EL10Ac4g10225' => 'bvu', 'EL10Ac6g15208' => 'bvu', 'EL10Ac9g21858' => 'bvu', 'Eucgr.E01880' => 'egr', 'Eucgr.F03968' => 'egr', 'Eucgr.I01995' => 'egr', 'Eucgr.I01996' => 'egr', 'FAN02G1582' => 'fan', 'FAN02G2392' => 'fan', 'FAN02G2724' => 'fan', 'FAN05G3980' => 'fan', 'FAN05G4760' => 'fan', 'FAN09G0100' => 'fan', 'FAN09G0525' => 'fan', 'FAN09G0865' => 'fan', 'FAN09G1704' => 'fan', 'FAN14G4880' => 'fan', 'FvH4_6g27830' => 'fve', 'FvH4_6g28520' => 'fve', 'FvH4_6g47771' => 'fve', 'FvH4_6g47772' => 'fve', 'Glyma.02G275100' => 'gma', 'Glyma.02G275200' => 'gma', 'Glyma.07G022000' => 'gma', 'Glyma.13G059500' => 'gma', 'Glyma.13G059700' => 'gma', 'Glyma.19G026900' => 'gma', 'Glyma.20G053100' => 'gma', 'Gohir.A05G118500' => 'ghi', 'Gohir.A05G369300' => 'ghi', 'Gohir.A11G071100' => 'ghi', 'Gohir.D04G046100' => 'ghi', 'Gohir.D05G101550' => 'ghi', 'Gohir.D05G119400' => 'ghi', 'Gohir.D11G075000' => 'ghi', 'Gohir.D11G075100' => 'ghi', 'Gorai.007G080600' => 'gra', 'Gorai.007G080700' => 'gra', 'Gorai.009G105700' => 'gra', 'Gorai.009G123000' => 'gra', 'Gorai.012G051300' => 'gra', 'GSVIVG01011475001' => 'vvi', 'GSVIVG01011476001' => 'vvi', 'GSVIVG01015979001' => 'vvi', 'HanXRQChr02g0033981' => 'han', 'HanXRQChr09g0264051' => 'han', 'HanXRQChr09g0264061' => 'han', 'HanXRQChr09g0264071' => 'han', 'HanXRQChr15g0487941' => 'han', 'HanXRQChr15g0487951' => 'han', 'HanXRQChr15g0488411' => 'han', 'Haze_14483' => 'cav', 'Haze_16674' => 'cav', 'Haze_23675' => 'cav', 'Hma1.2p1_0109F.1_g052640' => 'hma', 'Hma1.2p1_0329F.1_g127140' => 'hma', 'Hma1.2p1_2018F.1_g311220' => 'hma', 'Hma1.2p1_2073F.1_g313170' => 'hma', 'HPP92_004699' => 'vpl', 'HPP92_012505' => 'vpl', 'HPP92_027475' => 'vpl', 'Hund00493' => 'sun', 'Hund13178' => 'sun', 'Hund15566' => 'sun', 'Lalb_Chr02g0159091' => 'lal', 'Lalb_Chr02g0159101' => 'lal', 'Lalb_Chr10g0105951' => 'lal', 'Lalb_Chr10g0105961' => 'lal', 'Lalb_Chr17g0347581' => 'lal', 'Lalb_Chr21g0318491' => 'lal', 'Lalb_Chr21g0318501' => 'lal', 'Lalb_Chr21g0318511' => 'lal', 'Lalb_Chr22g0350391' => 'lal', 'Lalb_Chr24g0392821' => 'lal', 'Lj2g0001219' => 'lja', 'Lj2g0024407' => 'lja', 'Lj3g0002956' => 'lja', 'Lj4A114G80' => 'lonja', 'Lj4A114T80' => 'lonja', 'Lj6g0020692' => 'lja', 'Lj9A492T53' => 'lonja', 'LjContig00564g0010296' => 'lja', 'Lsat_1_v5_gn_2_88200' => 'lsa', 'Lsat_1_v5_gn_4_170021' => 'lsa', 'Lsat_1_v5_gn_4_170041' => 'lsa', 'Lsat_1_v5_gn_4_170061' => 'lsa', 'Manes.01G100000' => 'mes', 'Manes.02G050000' => 'mes', 'Manes.02G050100' => 'mes', 'Manes.11G067200' => 'mes', 'Manes.11G114200' => 'mes', 'MBI14_g34253_MAGBIO' => 'mbi', 'MBI15_g18245_MAGBIO' => 'mbi', 'MBI15_g43155_MAGBIO' => 'mbi', 'MD09G1057500' => 'mdo', 'MD09G1057600' => 'mdo', 'MD09G1225200' => 'mdo', 'MD11G1182000' => 'mdo', 'MD15G1314400' => 'mdo', 'MD17G1054300' => 'mdo', 'MD17G1054500' => 'mdo', 'MD17G1223900' => 'mdo', 'Medtr3g117110' => 'mtr', 'Medtr4g007250' => 'mtr', 'Medtr5g087970' => 'mtr', 'Medtr5g088000' => 'mtr', 'Medtr5g088170' => 'mtr', 'Medtr5g088180' => 'mtr', 'Medtr6g013170' => 'mtr', 'Medtr6g013200' => 'mtr', 'Medtr6g013420' => 'mtr', 'MELO3C009833.2' => 'cme', 'MELO3C026734.2' => 'cme', 'MELO3C029408.2' => 'cme', 'MELO3C030977.2' => 'cme', 'Migut.D01128' => 'egut', 'Migut.H00668' => 'egut', 'Migut.H00669' => 'egut', 'MSTRG.23910' => 'ama', 'MSTRG.3026' => 'ama', 'MSTRG.3342' => 'ama', 'MSTRG.4675' => 'ama', 'Nitab4.5_0000568g0290' => 'nta', 'Nitab4.5_0001271g0030' => 'nta', 'Nitab4.5_0001340g0050' => 'nta', 'Nitab4.5_0001591g0040' => 'nta', 'Nn1g04679' => 'nnu', 'Nn2g12397' => 'nnu', 'Nn3g17358' => 'nnu', 'Nn3g17359' => 'nnu', 'Nn3g18234' => 'nnu', 'Nn4g23310' => 'nnu', 'Nn4g23311' => 'nnu', 'Nn4g24563' => 'nnu', 'Nn4g24610' => 'nnu', 'Nn4g26103' => 'nnu', 'Nn6g34237' => 'nnu', 'Nn6g34257' => 'nnu', 'Nn7g36585' => 'nnu', 'Nn8g39909' => 'nnu', 'Oeu000846.1' => 'oeu', 'Oeu000847.1' => 'oeu', 'Oeu020662.1' => 'oeu', 'Oeu023717.1' => 'oeu', 'Oeu028002.1' => 'oeu', 'Oeu035930.1' => 'oeu', 'Oeu051572.1' => 'oeu', 'Os03g0758500' => 'osa', 'Os07g0112700' => 'osa', 'Os09g0557900' => 'osa', 'Peaxi162Scf00166g00921' => 'pax', 'Peaxi162Scf00166g00932' => 'pax', 'Peaxi162Scf00360g00410' => 'pax', 'Peaxi162Scf00553g00527' => 'pax', 'Peaxi162Scf00823g00021' => 'pax', 'Peaxi162Scf01411g00005' => 'pax', 'PGR004G0509' => 'pgr', 'PGR031G0492' => 'pgr', 'PGR056G0002' => 'pgr', 'PGR083G1972' => 'pgr', 'PGR102G2032' => 'pgr', 'PGSC0003DMG400001436' => 'stu', 'PGSC0003DMG400001437' => 'stu', 'PGSC0003DMG400028648' => 'stu', 'Phvul.004G032500' => 'pvu', 'Phvul.004G032800' => 'pvu', 'Phvul.010G162400' => 'pvu', 'Phvul.L003937' => 'pvu', 'Potri.001G043600' => 'ptr', 'Potri.001G219800' => 'ptr', 'Potri.001G219900' => 'ptr', 'Potri.003G183300' => 'ptr', 'Potri.004G121100' => 'ptr', 'Potri.017G088500' => 'ptr', 'Potri.017G088600' => 'ptr', 'Prupe.3G099600' => 'ppe', 'Prupe.3G261600' => 'ppe', 'Prupe.3G261800' => 'ppe', 'Prupe.6G154600' => 'ppe', 'Prupe.6G154700' => 'ppe', 'Psat1g070000' => 'psa', 'Psat1g071320' => 'psa', 'Psat2g021840' => 'psa', 'Psat5g005680' => 'psa', 'Psat7g263160' => 'psa', 'PSO063G0457' => 'pso', 'PSO063G2127' => 'pso', 'PSO063G3556' => 'pso', 'PSO063G4416' => 'pso', 'PSO063G7079' => 'pso', 'PSO339G1054' => 'pso', 'PSO541G2463' => 'pso', 'PSO675G8994' => 'pso', 'PSO782G1371' => 'pso', 'PSO782G1660' => 'pso', 'QL01p020179' => 'qlo', 'QL02p039253' => 'qlo', 'QL03p071147' => 'qlo', 'QL05p035664' => 'qlo', 'RcHm_v2.0_Chr2g0132811' => 'rch', 'RcHm_v2.0_Chr2g0166941' => 'rch', 'RcHm_v2.0_Chr2g0166951' => 'rch', 'RcHm_v2.0_Chr5g0049891' => 'rch', 'Rhsim03G0036900' => 'rsi', 'Rhsim03G0037100' => 'rsi', 'Rhsim03G0037600' => 'rsi', 'Rhsim03G0037700' => 'rsi', 'Rhsim03G0037800' => 'rsi', 'Rhsim03G0037900' => 'rsi', 'Rhsim10G0034800' => 'rsi', 'Rhsim10G0035000' => 'rsi', 'Rhsim12G0187100' => 'rsi', 'Sabra03G0133900' => 'sbr', 'Sabra16G0124400' => 'sbr', 'Sabra16G0124500' => 'sbr', 'Sabra17G0078300' => 'sbr', 'Sabra17G0078400' => 'sbr', 'SalBow1G1337' => 'sbo', 'SalBow1G5006' => 'sbo', 'SalBow1G6468' => 'sbo', 'SalBow1G7371' => 'sbo', 'SalBow1G8395' => 'sbo', 'SalBow6G4665' => 'sbo', 'Sc06g0010770' => 'sci', 'Sc10g0003340' => 'sci', 'Sc12g0008620' => 'sci', 'Sed0003380' => 'sed', 'Sed0006420' => 'sed', 'Sed0008099' => 'sed', 'Sed0012581' => 'sed', 'Sed0015366' => 'sed', 'SEGI_36586' => 'sgi', 'SGA_v2.0_scaffold413G51168' => 'sas', 'SGA_v2.0_scaffold4G02424' => 'sas', 'SHI05053' => 'shi', 'SHI25348' => 'shi', 'SMO171G0082' => 'smo', 'SMO347G0549' => 'smo', 'Solyc02g088380.4' => 'sly', 'Solyc02g088390.4' => 'sly', 'Solyc03g117560.3' => 'sly', 'Solyc12g042580.2' => 'sly', 'Sopen02g033060' => 'spe', 'Sopen02g033070' => 'spe', 'Sopen03g036470' => 'spe', 'Sopen12g021720' => 'spe', 'Sp3g01060' => 'spa', 'Sp4g08250' => 'spa', 'Sp6g28710' => 'spa', 'TAR374G0681' => 'tar', 'TAR622G0505' => 'tar', 'TAR625G0184' => 'tar', 'TAR629G2646' => 'tar', 'THA.LOC104800486' => 'tha', 'THA.LOC104812414' => 'tha', 'THA.LOC104821013' => 'tha', 'THA.LOC104822347' => 'tha', 'Thecc.04G088800' => 'tca', 'Thecc.04G088900' => 'tca', 'Thecc.06G042600' => 'tca', 'Thecc.06G042800' => 'tca', 'Thecc.09G338700' => 'tca', 'Thhalv10002108m.g' => 'esa', 'Thhalv10014831m.g' => 'esa', 'Thhalv10021623m.g' => 'esa', 'TPR.G11307' => 'tpr', 'TPR.G11331' => 'tpr', 'TPR.G16558' => 'tpr', 'TPR.G26217' => 'tpr', 'TPR.G3322' => 'tpr', 'TPR.G36016' => 'tpr', 'TWI18G1326' => 'twi', 'TWI32G0744' => 'twi', 'TWI34G0910' => 'twi', 'TWI34G1935' => 'twi', 'TWI75G1478' => 'twi', 'TWI79G1155' => 'twi', 'TWI79G1404' => 'twi', 'unitig_0.g355' => 'ugi', 'unitig_62.g23439' => 'ugi', 'vmacro05675' => 'vma', 'vmacro05676' => 'vma', 'vmacro16850' => 'vma', 'VMungo0331G0077' => 'vmu', 'VMungo0464G1350' => 'vmu', 'VMungo0464G2065' => 'vmu', 'Zm00001eb057870' => 'zma', 'Zm00001eb152260' => 'zma', 'Zm00001eb298480' => 'zma', 'Zm00001eb320500' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001441', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001441' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001441', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001441' ) ), 'genes' => array( 'A02p28040' => 'bna', 'A03p07120' => 'bna', 'A03p26780' => 'bna', 'A05p44880' => 'bna', 'A10p23510' => 'bna', 'Aa31LG11G14180' => 'aar', 'Aa31LG5G12550' => 'aar', 'Aa31LG5G8430' => 'aar', 'Aa31LG7G570' => 'aar', 'Actinidia01958' => 'ach', 'Actinidia01959' => 'ach', 'Actinidia06111' => 'ach', 'Actinidia06112' => 'ach', 'Ah.03g140020' => 'amhyb', 'Ah.06g193980' => 'amhyb', 'Ah.10g031860' => 'amhyb', 'Ah.12g062500' => 'amhyb', 'AL3G11190' => 'aly', 'AL4G20570' => 'aly', 'AL6G26230' => 'aly', 'AL9U11630' => 'aly', 'Aqoxy3G00468' => 'aox', 'Aqoxy3G00469' => 'aox', 'Aqoxy3G03524' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7Y0VRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P32VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLF82K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECN0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6LI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYRN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1LFEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJF7LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB99CZ' => 'arhy', 'AT2G27035' => 'ath', 'AT3G01070' => 'ath', 'AT4G12880' => 'ath', 'AT5G15350' => 'ath', 'ATR0580G049' => 'atr', 'ATR0730G065' => 'atr', 'ATR0730G141' => 'atr', 'Atru.chr1.1413' => 'acertr', 'Atru.chr1.2794' => 'acertr', 'Atru.chr8.355' => 'acertr', 'AUR62011464' => 'cqu', 'AUR62016591' => 'cqu', 'AUR62018126' => 'cqu', 'AUR62034459' => 'cqu', 'BcaB01g03039' => 'bca', 'BcaB01g05058' => 'bca', 'BcaB01g05062' => 'bca', 'BcaB07g30555' => 'bca', 'BcaC01g04921' => 'bca', 'BcaC03g13552' => 'bca', 'BcaC03g16605' => 'bca', 'BcaC04g24241' => 'bca', 'BcaC05g30320' => 'bca', 'BcaC05g30377' => 'bca', 'BcaC09g47680' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00060' => 'bna', 'BolC1t05924H' => 'bol', 'BolC2t10471H' => 'bol', 'BolC3t13308H' => 'bol', 'BolC3t15552H' => 'bol', 'BraA01t04635Z' => 'bra', 'BraA02t07842Z' => 'bra', 'BraA03t10034Z' => 'bra', 'BraA03t11889Z' => 'bra', 'BraA05t23169Z' => 'bra', 'C02p44340' => 'bna', 'C03p08110' => 'bna', 'C03p32090' => 'bna', 'C09p61740' => 'bna', 'C09p75460' => 'bna', 'CAN.G206.186' => 'can', 'CAN.G206.187' => 'can', 'CAN.G206.188' => 'can', 'CAN.G407.5' => 'can', 'CAN.G471.2' => 'can', 'CAN.G521.9' => 'can', 'CANSAT54G1924' => 'cansat', 'CANSAT54G2915' => 'cansat', 'CANSAT56G0770' => 'cansat', 'CANSAT64G1363' => 'cansat', 'CANSAT64G1417' => 'cansat', 'CARHR076000' => 'chi', 'CARHR119330' => 'chi', 'CARHR197940' => 'chi', 'Carub.0001s4155' => 'cru', 'Carub.0003s0110' => 'cru', 'Carub.0004s0752' => 'cru', 'Carub.0006s1354' => 'cru', 'Carub.0007s2990' => 'cru', 'Ca_04861_v3' => 'car', 'Ca_06161_v3' => 'car', 'Cc07_g03740' => 'ccan', 'Cc07_g03750' => 'ccan', 'CDE02G1753' => 'cde', 'CDE05G1009' => 'cde', 'CDE11G1175' => 'cde', 'Cfa001874' => 'cfa', 'Cfa007605' => 'cfa', 'Cfa010265' => 'cfa', 'Ciclev10012903m.g' => 'ccl', 'Ciclev10012929m.g' => 'ccl', 'Ciclev10016919m.g' => 'ccl', 'Ciclev10026582m.g' => 'ccl', 'CiPaw.01G255300' => 'cil', 'CiPaw.03G021000' => 'cil', 'CiPaw.04G013900' => 'cil', 'CiPaw.04G014000' => 'cil', 'CiPaw.14G090700' => 'cil', 'ClCG03G014080' => 'cla', 'ClCG10G012890' => 'cla', 'ClCG10G015480' => 'cla', 'ClCG10G015490' => 'cla', 'COL.COLO4_12244' => 'col', 'COL.COLO4_12245' => 'col', 'COL.COLO4_18351' => 'col', 'COL.COLO4_18354' => 'col', 'COL.COLO4_26736' => 'col', 'Cpa.g.sc10.61' => 'cpa', 'CsaV3_1G042160' => 'csa', 'CsaV3_3G032750' => 'csa', 'CsaV3_3G040980' => 'csa', 'CsaV3_3G040990' => 'csa', 'CSS0032145' => 'camsi', 'CSS0032460' => 'camsi', 'CSS0049769' => 'camsi', 'DCAR_011069' => 'dca', 'DCAR_021664' => 'dca', 'DCAR_025560' => 'dca', 'Dinv21415' => 'din', 'Dinv24002' => 'din', 'Dinv33797' => 'din', 'Duzib147G0324' => 'dzi', 'Duzib147G1600' => 'dzi', 'Duzib150G0154' => 'dzi', 'Duzib168G1282' => 'dzi', 'Duzib187G0668' => 'dzi', 'Duzib235G1424' => 'dzi', 'ECA232G0881' => 'eca', 'ECA232G3133' => 'eca', 'EL10Ac2g03037' => 'bvu', 'EL10Ac4g08364' => 'bvu', 'EL10Ac4g10220' => 'bvu', 'EL10Ac4g10225' => 'bvu', 'EL10Ac6g15208' => 'bvu', 'EL10Ac9g21858' => 'bvu', 'Eucgr.E01880' => 'egr', 'Eucgr.F03968' => 'egr', 'Eucgr.I01995' => 'egr', 'Eucgr.I01996' => 'egr', 'FAN02G1582' => 'fan', 'FAN02G2392' => 'fan', 'FAN02G2724' => 'fan', 'FAN05G3980' => 'fan', 'FAN05G4760' => 'fan', 'FAN09G0100' => 'fan', 'FAN09G0525' => 'fan', 'FAN09G0865' => 'fan', 'FAN09G1704' => 'fan', 'FAN14G4880' => 'fan', 'FvH4_6g27830' => 'fve', 'FvH4_6g28520' => 'fve', 'FvH4_6g47771' => 'fve', 'FvH4_6g47772' => 'fve', 'Glyma.02G275100' => 'gma', 'Glyma.02G275200' => 'gma', 'Glyma.07G022000' => 'gma', 'Glyma.13G059500' => 'gma', 'Glyma.13G059700' => 'gma', 'Glyma.19G026900' => 'gma', 'Glyma.20G053100' => 'gma', 'Gohir.A05G118500' => 'ghi', 'Gohir.A05G369300' => 'ghi', 'Gohir.A11G071100' => 'ghi', 'Gohir.D04G046100' => 'ghi', 'Gohir.D05G101550' => 'ghi', 'Gohir.D05G119400' => 'ghi', 'Gohir.D11G075000' => 'ghi', 'Gohir.D11G075100' => 'ghi', 'Gorai.007G080600' => 'gra', 'Gorai.007G080700' => 'gra', 'Gorai.009G105700' => 'gra', 'Gorai.009G123000' => 'gra', 'Gorai.012G051300' => 'gra', 'GSVIVG01011475001' => 'vvi', 'GSVIVG01011476001' => 'vvi', 'GSVIVG01015979001' => 'vvi', 'HanXRQChr02g0033981' => 'han', 'HanXRQChr09g0264051' => 'han', 'HanXRQChr09g0264061' => 'han', 'HanXRQChr09g0264071' => 'han', 'HanXRQChr15g0487941' => 'han', 'HanXRQChr15g0487951' => 'han', 'HanXRQChr15g0488411' => 'han', 'Haze_14483' => 'cav', 'Haze_16674' => 'cav', 'Haze_23675' => 'cav', 'Hma1.2p1_0109F.1_g052640' => 'hma', 'Hma1.2p1_0329F.1_g127140' => 'hma', 'Hma1.2p1_2018F.1_g311220' => 'hma', 'Hma1.2p1_2073F.1_g313170' => 'hma', 'HPP92_004699' => 'vpl', 'HPP92_012505' => 'vpl', 'HPP92_027475' => 'vpl', 'Hund00493' => 'sun', 'Hund13178' => 'sun', 'Hund15566' => 'sun', 'Lalb_Chr02g0159091' => 'lal', 'Lalb_Chr02g0159101' => 'lal', 'Lalb_Chr10g0105951' => 'lal', 'Lalb_Chr10g0105961' => 'lal', 'Lalb_Chr17g0347581' => 'lal', 'Lalb_Chr21g0318491' => 'lal', 'Lalb_Chr21g0318501' => 'lal', 'Lalb_Chr21g0318511' => 'lal', 'Lalb_Chr22g0350391' => 'lal', 'Lalb_Chr24g0392821' => 'lal', 'Lj2g0001219' => 'lja', 'Lj2g0024407' => 'lja', 'Lj3g0002956' => 'lja', 'Lj4A114G80' => 'lonja', 'Lj4A114T80' => 'lonja', 'Lj6g0020692' => 'lja', 'Lj9A492T53' => 'lonja', 'LjContig00564g0010296' => 'lja', 'Lsat_1_v5_gn_2_88200' => 'lsa', 'Lsat_1_v5_gn_4_170021' => 'lsa', 'Lsat_1_v5_gn_4_170041' => 'lsa', 'Lsat_1_v5_gn_4_170061' => 'lsa', 'Manes.01G100000' => 'mes', 'Manes.02G050000' => 'mes', 'Manes.02G050100' => 'mes', 'Manes.11G067200' => 'mes', 'Manes.11G114200' => 'mes', 'MBI14_g34253_MAGBIO' => 'mbi', 'MBI15_g18245_MAGBIO' => 'mbi', 'MBI15_g43155_MAGBIO' => 'mbi', 'MD09G1057500' => 'mdo', 'MD09G1057600' => 'mdo', 'MD09G1225200' => 'mdo', 'MD11G1182000' => 'mdo', 'MD15G1314400' => 'mdo', 'MD17G1054300' => 'mdo', 'MD17G1054500' => 'mdo', 'MD17G1223900' => 'mdo', 'Medtr3g117110' => 'mtr', 'Medtr4g007250' => 'mtr', 'Medtr5g087970' => 'mtr', 'Medtr5g088000' => 'mtr', 'Medtr5g088170' => 'mtr', 'Medtr5g088180' => 'mtr', 'Medtr6g013170' => 'mtr', 'Medtr6g013200' => 'mtr', 'Medtr6g013420' => 'mtr', 'MELO3C009833.2' => 'cme', 'MELO3C026734.2' => 'cme', 'MELO3C029408.2' => 'cme', 'MELO3C030977.2' => 'cme', 'Migut.D01128' => 'egut', 'Migut.H00668' => 'egut', 'Migut.H00669' => 'egut', 'MSTRG.23910' => 'ama', 'MSTRG.3026' => 'ama', 'MSTRG.3342' => 'ama', 'MSTRG.4675' => 'ama', 'Nitab4.5_0000568g0290' => 'nta', 'Nitab4.5_0001271g0030' => 'nta', 'Nitab4.5_0001340g0050' => 'nta', 'Nitab4.5_0001591g0040' => 'nta', 'Nn1g04679' => 'nnu', 'Nn2g12397' => 'nnu', 'Nn3g17358' => 'nnu', 'Nn3g17359' => 'nnu', 'Nn3g18234' => 'nnu', 'Nn4g23310' => 'nnu', 'Nn4g23311' => 'nnu', 'Nn4g24563' => 'nnu', 'Nn4g24610' => 'nnu', 'Nn4g26103' => 'nnu', 'Nn6g34237' => 'nnu', 'Nn6g34257' => 'nnu', 'Nn7g36585' => 'nnu', 'Nn8g39909' => 'nnu', 'Oeu000846.1' => 'oeu', 'Oeu000847.1' => 'oeu', 'Oeu020662.1' => 'oeu', 'Oeu023717.1' => 'oeu', 'Oeu028002.1' => 'oeu', 'Oeu035930.1' => 'oeu', 'Oeu051572.1' => 'oeu', 'Os03g0758500' => 'osa', 'Os07g0112700' => 'osa', 'Os09g0557900' => 'osa', 'Peaxi162Scf00166g00921' => 'pax', 'Peaxi162Scf00166g00932' => 'pax', 'Peaxi162Scf00360g00410' => 'pax', 'Peaxi162Scf00553g00527' => 'pax', 'Peaxi162Scf00823g00021' => 'pax', 'Peaxi162Scf01411g00005' => 'pax', 'PGR004G0509' => 'pgr', 'PGR031G0492' => 'pgr', 'PGR056G0002' => 'pgr', 'PGR083G1972' => 'pgr', 'PGR102G2032' => 'pgr', 'PGSC0003DMG400001436' => 'stu', 'PGSC0003DMG400001437' => 'stu', 'PGSC0003DMG400028648' => 'stu', 'Phvul.004G032500' => 'pvu', 'Phvul.004G032800' => 'pvu', 'Phvul.010G162400' => 'pvu', 'Phvul.L003937' => 'pvu', 'Potri.001G043600' => 'ptr', 'Potri.001G219800' => 'ptr', 'Potri.001G219900' => 'ptr', 'Potri.003G183300' => 'ptr', 'Potri.004G121100' => 'ptr', 'Potri.017G088500' => 'ptr', 'Potri.017G088600' => 'ptr', 'Prupe.3G099600' => 'ppe', 'Prupe.3G261600' => 'ppe', 'Prupe.3G261800' => 'ppe', 'Prupe.6G154600' => 'ppe', 'Prupe.6G154700' => 'ppe', 'Psat1g070000' => 'psa', 'Psat1g071320' => 'psa', 'Psat2g021840' => 'psa', 'Psat5g005680' => 'psa', 'Psat7g263160' => 'psa', 'PSO063G0457' => 'pso', 'PSO063G2127' => 'pso', 'PSO063G3556' => 'pso', 'PSO063G4416' => 'pso', 'PSO063G7079' => 'pso', 'PSO339G1054' => 'pso', 'PSO541G2463' => 'pso', 'PSO675G8994' => 'pso', 'PSO782G1371' => 'pso', 'PSO782G1660' => 'pso', 'QL01p020179' => 'qlo', 'QL02p039253' => 'qlo', 'QL03p071147' => 'qlo', 'QL05p035664' => 'qlo', 'RcHm_v2.0_Chr2g0132811' => 'rch', 'RcHm_v2.0_Chr2g0166941' => 'rch', 'RcHm_v2.0_Chr2g0166951' => 'rch', 'RcHm_v2.0_Chr5g0049891' => 'rch', 'Rhsim03G0036900' => 'rsi', 'Rhsim03G0037100' => 'rsi', 'Rhsim03G0037600' => 'rsi', 'Rhsim03G0037700' => 'rsi', 'Rhsim03G0037800' => 'rsi', 'Rhsim03G0037900' => 'rsi', 'Rhsim10G0034800' => 'rsi', 'Rhsim10G0035000' => 'rsi', 'Rhsim12G0187100' => 'rsi', 'Sabra03G0133900' => 'sbr', 'Sabra16G0124400' => 'sbr', 'Sabra16G0124500' => 'sbr', 'Sabra17G0078300' => 'sbr', 'Sabra17G0078400' => 'sbr', 'SalBow1G1337' => 'sbo', 'SalBow1G5006' => 'sbo', 'SalBow1G6468' => 'sbo', 'SalBow1G7371' => 'sbo', 'SalBow1G8395' => 'sbo', 'SalBow6G4665' => 'sbo', 'Sc06g0010770' => 'sci', 'Sc10g0003340' => 'sci', 'Sc12g0008620' => 'sci', 'Sed0003380' => 'sed', 'Sed0006420' => 'sed', 'Sed0008099' => 'sed', 'Sed0012581' => 'sed', 'Sed0015366' => 'sed', 'SEGI_36586' => 'sgi', 'SGA_v2.0_scaffold413G51168' => 'sas', 'SGA_v2.0_scaffold4G02424' => 'sas', 'SHI05053' => 'shi', 'SHI25348' => 'shi', 'SMO171G0082' => 'smo', 'SMO347G0549' => 'smo', 'Solyc02g088380.4' => 'sly', 'Solyc02g088390.4' => 'sly', 'Solyc03g117560.3' => 'sly', 'Solyc12g042580.2' => 'sly', 'Sopen02g033060' => 'spe', 'Sopen02g033070' => 'spe', 'Sopen03g036470' => 'spe', 'Sopen12g021720' => 'spe', 'Sp3g01060' => 'spa', 'Sp4g08250' => 'spa', 'Sp6g28710' => 'spa', 'TAR374G0681' => 'tar', 'TAR622G0505' => 'tar', 'TAR625G0184' => 'tar', 'TAR629G2646' => 'tar', 'THA.LOC104800486' => 'tha', 'THA.LOC104812414' => 'tha', 'THA.LOC104821013' => 'tha', 'THA.LOC104822347' => 'tha', 'Thecc.04G088800' => 'tca', 'Thecc.04G088900' => 'tca', 'Thecc.06G042600' => 'tca', 'Thecc.06G042800' => 'tca', 'Thecc.09G338700' => 'tca', 'Thhalv10002108m.g' => 'esa', 'Thhalv10014831m.g' => 'esa', 'Thhalv10021623m.g' => 'esa', 'TPR.G11307' => 'tpr', 'TPR.G11331' => 'tpr', 'TPR.G16558' => 'tpr', 'TPR.G26217' => 'tpr', 'TPR.G3322' => 'tpr', 'TPR.G36016' => 'tpr', 'TWI18G1326' => 'twi', 'TWI32G0744' => 'twi', 'TWI34G0910' => 'twi', 'TWI34G1935' => 'twi', 'TWI75G1478' => 'twi', 'TWI79G1155' => 'twi', 'TWI79G1404' => 'twi', 'unitig_0.g355' => 'ugi', 'unitig_62.g23439' => 'ugi', 'vmacro05675' => 'vma', 'vmacro05676' => 'vma', 'vmacro16850' => 'vma', 'VMungo0331G0077' => 'vmu', 'VMungo0464G1350' => 'vmu', 'VMungo0464G2065' => 'vmu', 'Zm00001eb057870' => 'zma', 'Zm00001eb152260' => 'zma', 'Zm00001eb298480' => 'zma', 'Zm00001eb320500' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001441' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001441' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001441' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001441' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001441', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p28040' => 'bna', 'A03p07120' => 'bna', 'A03p26780' => 'bna', 'A05p44880' => 'bna', 'A10p23510' => 'bna', 'Aa31LG11G14180' => 'aar', 'Aa31LG5G12550' => 'aar', 'Aa31LG5G8430' => 'aar', 'Aa31LG7G570' => 'aar', 'Actinidia01958' => 'ach', 'Actinidia01959' => 'ach', 'Actinidia06111' => 'ach', 'Actinidia06112' => 'ach', 'Ah.03g140020' => 'amhyb', 'Ah.06g193980' => 'amhyb', 'Ah.10g031860' => 'amhyb', 'Ah.12g062500' => 'amhyb', 'AL3G11190' => 'aly', 'AL4G20570' => 'aly', 'AL6G26230' => 'aly', 'AL9U11630' => 'aly', 'Aqoxy3G00468' => 'aox', 'Aqoxy3G00469' => 'aox', 'Aqoxy3G03524' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7Y0VRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P32VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLF82K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECN0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6LI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYRN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1LFEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJF7LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB99CZ' => 'arhy', 'AT2G27035' => 'ath', 'AT3G01070' => 'ath', 'AT4G12880' => 'ath', 'AT5G15350' => 'ath', 'ATR0580G049' => 'atr', 'ATR0730G065' => 'atr', 'ATR0730G141' => 'atr', 'Atru.chr1.1413' => 'acertr', 'Atru.chr1.2794' => 'acertr', 'Atru.chr8.355' => 'acertr', 'AUR62011464' => 'cqu', 'AUR62016591' => 'cqu', 'AUR62018126' => 'cqu', 'AUR62034459' => 'cqu', 'BcaB01g03039' => 'bca', 'BcaB01g05058' => 'bca', 'BcaB01g05062' => 'bca', 'BcaB07g30555' => 'bca', 'BcaC01g04921' => 'bca', 'BcaC03g13552' => 'bca', 'BcaC03g16605' => 'bca', 'BcaC04g24241' => 'bca', 'BcaC05g30320' => 'bca', 'BcaC05g30377' => 'bca', 'BcaC09g47680' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00060' => 'bna', 'BolC1t05924H' => 'bol', 'BolC2t10471H' => 'bol', 'BolC3t13308H' => 'bol', 'BolC3t15552H' => 'bol', 'BraA01t04635Z' => 'bra', 'BraA02t07842Z' => 'bra', 'BraA03t10034Z' => 'bra', 'BraA03t11889Z' => 'bra', 'BraA05t23169Z' => 'bra', 'C02p44340' => 'bna', 'C03p08110' => 'bna', 'C03p32090' => 'bna', 'C09p61740' => 'bna', 'C09p75460' => 'bna', 'CAN.G206.186' => 'can', 'CAN.G206.187' => 'can', 'CAN.G206.188' => 'can', 'CAN.G407.5' => 'can', 'CAN.G471.2' => 'can', 'CAN.G521.9' => 'can', 'CANSAT54G1924' => 'cansat', 'CANSAT54G2915' => 'cansat', 'CANSAT56G0770' => 'cansat', 'CANSAT64G1363' => 'cansat', 'CANSAT64G1417' => 'cansat', 'CARHR076000' => 'chi', 'CARHR119330' => 'chi', 'CARHR197940' => 'chi', 'Carub.0001s4155' => 'cru', 'Carub.0003s0110' => 'cru', 'Carub.0004s0752' => 'cru', 'Carub.0006s1354' => 'cru', 'Carub.0007s2990' => 'cru', 'Ca_04861_v3' => 'car', 'Ca_06161_v3' => 'car', 'Cc07_g03740' => 'ccan', 'Cc07_g03750' => 'ccan', 'CDE02G1753' => 'cde', 'CDE05G1009' => 'cde', 'CDE11G1175' => 'cde', 'Cfa001874' => 'cfa', 'Cfa007605' => 'cfa', 'Cfa010265' => 'cfa', 'Ciclev10012903m.g' => 'ccl', 'Ciclev10012929m.g' => 'ccl', 'Ciclev10016919m.g' => 'ccl', 'Ciclev10026582m.g' => 'ccl', 'CiPaw.01G255300' => 'cil', 'CiPaw.03G021000' => 'cil', 'CiPaw.04G013900' => 'cil', 'CiPaw.04G014000' => 'cil', 'CiPaw.14G090700' => 'cil', 'ClCG03G014080' => 'cla', 'ClCG10G012890' => 'cla', 'ClCG10G015480' => 'cla', 'ClCG10G015490' => 'cla', 'COL.COLO4_12244' => 'col', 'COL.COLO4_12245' => 'col', 'COL.COLO4_18351' => 'col', 'COL.COLO4_18354' => 'col', 'COL.COLO4_26736' => 'col', 'Cpa.g.sc10.61' => 'cpa', 'CsaV3_1G042160' => 'csa', 'CsaV3_3G032750' => 'csa', 'CsaV3_3G040980' => 'csa', 'CsaV3_3G040990' => 'csa', 'CSS0032145' => 'camsi', 'CSS0032460' => 'camsi', 'CSS0049769' => 'camsi', 'DCAR_011069' => 'dca', 'DCAR_021664' => 'dca', 'DCAR_025560' => 'dca', 'Dinv21415' => 'din', 'Dinv24002' => 'din', 'Dinv33797' => 'din', 'Duzib147G0324' => 'dzi', 'Duzib147G1600' => 'dzi', 'Duzib150G0154' => 'dzi', 'Duzib168G1282' => 'dzi', 'Duzib187G0668' => 'dzi', 'Duzib235G1424' => 'dzi', 'ECA232G0881' => 'eca', 'ECA232G3133' => 'eca', 'EL10Ac2g03037' => 'bvu', 'EL10Ac4g08364' => 'bvu', 'EL10Ac4g10220' => 'bvu', 'EL10Ac4g10225' => 'bvu', 'EL10Ac6g15208' => 'bvu', 'EL10Ac9g21858' => 'bvu', 'Eucgr.E01880' => 'egr', 'Eucgr.F03968' => 'egr', 'Eucgr.I01995' => 'egr', 'Eucgr.I01996' => 'egr', 'FAN02G1582' => 'fan', 'FAN02G2392' => 'fan', 'FAN02G2724' => 'fan', 'FAN05G3980' => 'fan', 'FAN05G4760' => 'fan', 'FAN09G0100' => 'fan', 'FAN09G0525' => 'fan', 'FAN09G0865' => 'fan', 'FAN09G1704' => 'fan', 'FAN14G4880' => 'fan', 'FvH4_6g27830' => 'fve', 'FvH4_6g28520' => 'fve', 'FvH4_6g47771' => 'fve', 'FvH4_6g47772' => 'fve', 'Glyma.02G275100' => 'gma', 'Glyma.02G275200' => 'gma', 'Glyma.07G022000' => 'gma', 'Glyma.13G059500' => 'gma', 'Glyma.13G059700' => 'gma', 'Glyma.19G026900' => 'gma', 'Glyma.20G053100' => 'gma', 'Gohir.A05G118500' => 'ghi', 'Gohir.A05G369300' => 'ghi', 'Gohir.A11G071100' => 'ghi', 'Gohir.D04G046100' => 'ghi', 'Gohir.D05G101550' => 'ghi', 'Gohir.D05G119400' => 'ghi', 'Gohir.D11G075000' => 'ghi', 'Gohir.D11G075100' => 'ghi', 'Gorai.007G080600' => 'gra', 'Gorai.007G080700' => 'gra', 'Gorai.009G105700' => 'gra', 'Gorai.009G123000' => 'gra', 'Gorai.012G051300' => 'gra', 'GSVIVG01011475001' => 'vvi', 'GSVIVG01011476001' => 'vvi', 'GSVIVG01015979001' => 'vvi', 'HanXRQChr02g0033981' => 'han', 'HanXRQChr09g0264051' => 'han', 'HanXRQChr09g0264061' => 'han', 'HanXRQChr09g0264071' => 'han', 'HanXRQChr15g0487941' => 'han', 'HanXRQChr15g0487951' => 'han', 'HanXRQChr15g0488411' => 'han', 'Haze_14483' => 'cav', 'Haze_16674' => 'cav', 'Haze_23675' => 'cav', 'Hma1.2p1_0109F.1_g052640' => 'hma', 'Hma1.2p1_0329F.1_g127140' => 'hma', 'Hma1.2p1_2018F.1_g311220' => 'hma', 'Hma1.2p1_2073F.1_g313170' => 'hma', 'HPP92_004699' => 'vpl', 'HPP92_012505' => 'vpl', 'HPP92_027475' => 'vpl', 'Hund00493' => 'sun', 'Hund13178' => 'sun', 'Hund15566' => 'sun', 'Lalb_Chr02g0159091' => 'lal', 'Lalb_Chr02g0159101' => 'lal', 'Lalb_Chr10g0105951' => 'lal', 'Lalb_Chr10g0105961' => 'lal', 'Lalb_Chr17g0347581' => 'lal', 'Lalb_Chr21g0318491' => 'lal', 'Lalb_Chr21g0318501' => 'lal', 'Lalb_Chr21g0318511' => 'lal', 'Lalb_Chr22g0350391' => 'lal', 'Lalb_Chr24g0392821' => 'lal', 'Lj2g0001219' => 'lja', 'Lj2g0024407' => 'lja', 'Lj3g0002956' => 'lja', 'Lj4A114G80' => 'lonja', 'Lj4A114T80' => 'lonja', 'Lj6g0020692' => 'lja', 'Lj9A492T53' => 'lonja', 'LjContig00564g0010296' => 'lja', 'Lsat_1_v5_gn_2_88200' => 'lsa', 'Lsat_1_v5_gn_4_170021' => 'lsa', 'Lsat_1_v5_gn_4_170041' => 'lsa', 'Lsat_1_v5_gn_4_170061' => 'lsa', 'Manes.01G100000' => 'mes', 'Manes.02G050000' => 'mes', 'Manes.02G050100' => 'mes', 'Manes.11G067200' => 'mes', 'Manes.11G114200' => 'mes', 'MBI14_g34253_MAGBIO' => 'mbi', 'MBI15_g18245_MAGBIO' => 'mbi', 'MBI15_g43155_MAGBIO' => 'mbi', 'MD09G1057500' => 'mdo', 'MD09G1057600' => 'mdo', 'MD09G1225200' => 'mdo', 'MD11G1182000' => 'mdo', 'MD15G1314400' => 'mdo', 'MD17G1054300' => 'mdo', 'MD17G1054500' => 'mdo', 'MD17G1223900' => 'mdo', 'Medtr3g117110' => 'mtr', 'Medtr4g007250' => 'mtr', 'Medtr5g087970' => 'mtr', 'Medtr5g088000' => 'mtr', 'Medtr5g088170' => 'mtr', 'Medtr5g088180' => 'mtr', 'Medtr6g013170' => 'mtr', 'Medtr6g013200' => 'mtr', 'Medtr6g013420' => 'mtr', 'MELO3C009833.2' => 'cme', 'MELO3C026734.2' => 'cme', 'MELO3C029408.2' => 'cme', 'MELO3C030977.2' => 'cme', 'Migut.D01128' => 'egut', 'Migut.H00668' => 'egut', 'Migut.H00669' => 'egut', 'MSTRG.23910' => 'ama', 'MSTRG.3026' => 'ama', 'MSTRG.3342' => 'ama', 'MSTRG.4675' => 'ama', 'Nitab4.5_0000568g0290' => 'nta', 'Nitab4.5_0001271g0030' => 'nta', 'Nitab4.5_0001340g0050' => 'nta', 'Nitab4.5_0001591g0040' => 'nta', 'Nn1g04679' => 'nnu', 'Nn2g12397' => 'nnu', 'Nn3g17358' => 'nnu', 'Nn3g17359' => 'nnu', 'Nn3g18234' => 'nnu', 'Nn4g23310' => 'nnu', 'Nn4g23311' => 'nnu', 'Nn4g24563' => 'nnu', 'Nn4g24610' => 'nnu', 'Nn4g26103' => 'nnu', 'Nn6g34237' => 'nnu', 'Nn6g34257' => 'nnu', 'Nn7g36585' => 'nnu', 'Nn8g39909' => 'nnu', 'Oeu000846.1' => 'oeu', 'Oeu000847.1' => 'oeu', 'Oeu020662.1' => 'oeu', 'Oeu023717.1' => 'oeu', 'Oeu028002.1' => 'oeu', 'Oeu035930.1' => 'oeu', 'Oeu051572.1' => 'oeu', 'Os03g0758500' => 'osa', 'Os07g0112700' => 'osa', 'Os09g0557900' => 'osa', 'Peaxi162Scf00166g00921' => 'pax', 'Peaxi162Scf00166g00932' => 'pax', 'Peaxi162Scf00360g00410' => 'pax', 'Peaxi162Scf00553g00527' => 'pax', 'Peaxi162Scf00823g00021' => 'pax', 'Peaxi162Scf01411g00005' => 'pax', 'PGR004G0509' => 'pgr', 'PGR031G0492' => 'pgr', 'PGR056G0002' => 'pgr', 'PGR083G1972' => 'pgr', 'PGR102G2032' => 'pgr', 'PGSC0003DMG400001436' => 'stu', 'PGSC0003DMG400001437' => 'stu', 'PGSC0003DMG400028648' => 'stu', 'Phvul.004G032500' => 'pvu', 'Phvul.004G032800' => 'pvu', 'Phvul.010G162400' => 'pvu', 'Phvul.L003937' => 'pvu', 'Potri.001G043600' => 'ptr', 'Potri.001G219800' => 'ptr', 'Potri.001G219900' => 'ptr', 'Potri.003G183300' => 'ptr', 'Potri.004G121100' => 'ptr', 'Potri.017G088500' => 'ptr', 'Potri.017G088600' => 'ptr', 'Prupe.3G099600' => 'ppe', 'Prupe.3G261600' => 'ppe', 'Prupe.3G261800' => 'ppe', 'Prupe.6G154600' => 'ppe', 'Prupe.6G154700' => 'ppe', 'Psat1g070000' => 'psa', 'Psat1g071320' => 'psa', 'Psat2g021840' => 'psa', 'Psat5g005680' => 'psa', 'Psat7g263160' => 'psa', 'PSO063G0457' => 'pso', 'PSO063G2127' => 'pso', 'PSO063G3556' => 'pso', 'PSO063G4416' => 'pso', 'PSO063G7079' => 'pso', 'PSO339G1054' => 'pso', 'PSO541G2463' => 'pso', 'PSO675G8994' => 'pso', 'PSO782G1371' => 'pso', 'PSO782G1660' => 'pso', 'QL01p020179' => 'qlo', 'QL02p039253' => 'qlo', 'QL03p071147' => 'qlo', 'QL05p035664' => 'qlo', 'RcHm_v2.0_Chr2g0132811' => 'rch', 'RcHm_v2.0_Chr2g0166941' => 'rch', 'RcHm_v2.0_Chr2g0166951' => 'rch', 'RcHm_v2.0_Chr5g0049891' => 'rch', 'Rhsim03G0036900' => 'rsi', 'Rhsim03G0037100' => 'rsi', 'Rhsim03G0037600' => 'rsi', 'Rhsim03G0037700' => 'rsi', 'Rhsim03G0037800' => 'rsi', 'Rhsim03G0037900' => 'rsi', 'Rhsim10G0034800' => 'rsi', 'Rhsim10G0035000' => 'rsi', 'Rhsim12G0187100' => 'rsi', 'Sabra03G0133900' => 'sbr', 'Sabra16G0124400' => 'sbr', 'Sabra16G0124500' => 'sbr', 'Sabra17G0078300' => 'sbr', 'Sabra17G0078400' => 'sbr', 'SalBow1G1337' => 'sbo', 'SalBow1G5006' => 'sbo', 'SalBow1G6468' => 'sbo', 'SalBow1G7371' => 'sbo', 'SalBow1G8395' => 'sbo', 'SalBow6G4665' => 'sbo', 'Sc06g0010770' => 'sci', 'Sc10g0003340' => 'sci', 'Sc12g0008620' => 'sci', 'Sed0003380' => 'sed', 'Sed0006420' => 'sed', 'Sed0008099' => 'sed', 'Sed0012581' => 'sed', 'Sed0015366' => 'sed', 'SEGI_36586' => 'sgi', 'SGA_v2.0_scaffold413G51168' => 'sas', 'SGA_v2.0_scaffold4G02424' => 'sas', 'SHI05053' => 'shi', 'SHI25348' => 'shi', 'SMO171G0082' => 'smo', 'SMO347G0549' => 'smo', 'Solyc02g088380.4' => 'sly', 'Solyc02g088390.4' => 'sly', 'Solyc03g117560.3' => 'sly', 'Solyc12g042580.2' => 'sly', 'Sopen02g033060' => 'spe', 'Sopen02g033070' => 'spe', 'Sopen03g036470' => 'spe', 'Sopen12g021720' => 'spe', 'Sp3g01060' => 'spa', 'Sp4g08250' => 'spa', 'Sp6g28710' => 'spa', 'TAR374G0681' => 'tar', 'TAR622G0505' => 'tar', 'TAR625G0184' => 'tar', 'TAR629G2646' => 'tar', 'THA.LOC104800486' => 'tha', 'THA.LOC104812414' => 'tha', 'THA.LOC104821013' => 'tha', 'THA.LOC104822347' => 'tha', 'Thecc.04G088800' => 'tca', 'Thecc.04G088900' => 'tca', 'Thecc.06G042600' => 'tca', 'Thecc.06G042800' => 'tca', 'Thecc.09G338700' => 'tca', 'Thhalv10002108m.g' => 'esa', 'Thhalv10014831m.g' => 'esa', 'Thhalv10021623m.g' => 'esa', 'TPR.G11307' => 'tpr', 'TPR.G11331' => 'tpr', 'TPR.G16558' => 'tpr', 'TPR.G26217' => 'tpr', 'TPR.G3322' => 'tpr', 'TPR.G36016' => 'tpr', 'TWI18G1326' => 'twi', 'TWI32G0744' => 'twi', 'TWI34G0910' => 'twi', 'TWI34G1935' => 'twi', 'TWI75G1478' => 'twi', 'TWI79G1155' => 'twi', 'TWI79G1404' => 'twi', 'unitig_0.g355' => 'ugi', 'unitig_62.g23439' => 'ugi', 'vmacro05675' => 'vma', 'vmacro05676' => 'vma', 'vmacro16850' => 'vma', 'VMungo0331G0077' => 'vmu', 'VMungo0464G1350' => 'vmu', 'VMungo0464G2065' => 'vmu', 'Zm00001eb057870' => 'zma', 'Zm00001eb152260' => 'zma', 'Zm00001eb298480' => 'zma', 'Zm00001eb320500' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001441', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001441' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001441', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001441' ) ), 'genes' => array( 'A02p28040' => 'bna', 'A03p07120' => 'bna', 'A03p26780' => 'bna', 'A05p44880' => 'bna', 'A10p23510' => 'bna', 'Aa31LG11G14180' => 'aar', 'Aa31LG5G12550' => 'aar', 'Aa31LG5G8430' => 'aar', 'Aa31LG7G570' => 'aar', 'Actinidia01958' => 'ach', 'Actinidia01959' => 'ach', 'Actinidia06111' => 'ach', 'Actinidia06112' => 'ach', 'Ah.03g140020' => 'amhyb', 'Ah.06g193980' => 'amhyb', 'Ah.10g031860' => 'amhyb', 'Ah.12g062500' => 'amhyb', 'AL3G11190' => 'aly', 'AL4G20570' => 'aly', 'AL6G26230' => 'aly', 'AL9U11630' => 'aly', 'Aqoxy3G00468' => 'aox', 'Aqoxy3G00469' => 'aox', 'Aqoxy3G03524' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7Y0VRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P32VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLF82K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECN0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6LI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYRN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1LFEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJF7LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB99CZ' => 'arhy', 'AT2G27035' => 'ath', 'AT3G01070' => 'ath', 'AT4G12880' => 'ath', 'AT5G15350' => 'ath', 'ATR0580G049' => 'atr', 'ATR0730G065' => 'atr', 'ATR0730G141' => 'atr', 'Atru.chr1.1413' => 'acertr', 'Atru.chr1.2794' => 'acertr', 'Atru.chr8.355' => 'acertr', 'AUR62011464' => 'cqu', 'AUR62016591' => 'cqu', 'AUR62018126' => 'cqu', 'AUR62034459' => 'cqu', 'BcaB01g03039' => 'bca', 'BcaB01g05058' => 'bca', 'BcaB01g05062' => 'bca', 'BcaB07g30555' => 'bca', 'BcaC01g04921' => 'bca', 'BcaC03g13552' => 'bca', 'BcaC03g16605' => 'bca', 'BcaC04g24241' => 'bca', 'BcaC05g30320' => 'bca', 'BcaC05g30377' => 'bca', 'BcaC09g47680' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00060' => 'bna', 'BolC1t05924H' => 'bol', 'BolC2t10471H' => 'bol', 'BolC3t13308H' => 'bol', 'BolC3t15552H' => 'bol', 'BraA01t04635Z' => 'bra', 'BraA02t07842Z' => 'bra', 'BraA03t10034Z' => 'bra', 'BraA03t11889Z' => 'bra', 'BraA05t23169Z' => 'bra', 'C02p44340' => 'bna', 'C03p08110' => 'bna', 'C03p32090' => 'bna', 'C09p61740' => 'bna', 'C09p75460' => 'bna', 'CAN.G206.186' => 'can', 'CAN.G206.187' => 'can', 'CAN.G206.188' => 'can', 'CAN.G407.5' => 'can', 'CAN.G471.2' => 'can', 'CAN.G521.9' => 'can', 'CANSAT54G1924' => 'cansat', 'CANSAT54G2915' => 'cansat', 'CANSAT56G0770' => 'cansat', 'CANSAT64G1363' => 'cansat', 'CANSAT64G1417' => 'cansat', 'CARHR076000' => 'chi', 'CARHR119330' => 'chi', 'CARHR197940' => 'chi', 'Carub.0001s4155' => 'cru', 'Carub.0003s0110' => 'cru', 'Carub.0004s0752' => 'cru', 'Carub.0006s1354' => 'cru', 'Carub.0007s2990' => 'cru', 'Ca_04861_v3' => 'car', 'Ca_06161_v3' => 'car', 'Cc07_g03740' => 'ccan', 'Cc07_g03750' => 'ccan', 'CDE02G1753' => 'cde', 'CDE05G1009' => 'cde', 'CDE11G1175' => 'cde', 'Cfa001874' => 'cfa', 'Cfa007605' => 'cfa', 'Cfa010265' => 'cfa', 'Ciclev10012903m.g' => 'ccl', 'Ciclev10012929m.g' => 'ccl', 'Ciclev10016919m.g' => 'ccl', 'Ciclev10026582m.g' => 'ccl', 'CiPaw.01G255300' => 'cil', 'CiPaw.03G021000' => 'cil', 'CiPaw.04G013900' => 'cil', 'CiPaw.04G014000' => 'cil', 'CiPaw.14G090700' => 'cil', 'ClCG03G014080' => 'cla', 'ClCG10G012890' => 'cla', 'ClCG10G015480' => 'cla', 'ClCG10G015490' => 'cla', 'COL.COLO4_12244' => 'col', 'COL.COLO4_12245' => 'col', 'COL.COLO4_18351' => 'col', 'COL.COLO4_18354' => 'col', 'COL.COLO4_26736' => 'col', 'Cpa.g.sc10.61' => 'cpa', 'CsaV3_1G042160' => 'csa', 'CsaV3_3G032750' => 'csa', 'CsaV3_3G040980' => 'csa', 'CsaV3_3G040990' => 'csa', 'CSS0032145' => 'camsi', 'CSS0032460' => 'camsi', 'CSS0049769' => 'camsi', 'DCAR_011069' => 'dca', 'DCAR_021664' => 'dca', 'DCAR_025560' => 'dca', 'Dinv21415' => 'din', 'Dinv24002' => 'din', 'Dinv33797' => 'din', 'Duzib147G0324' => 'dzi', 'Duzib147G1600' => 'dzi', 'Duzib150G0154' => 'dzi', 'Duzib168G1282' => 'dzi', 'Duzib187G0668' => 'dzi', 'Duzib235G1424' => 'dzi', 'ECA232G0881' => 'eca', 'ECA232G3133' => 'eca', 'EL10Ac2g03037' => 'bvu', 'EL10Ac4g08364' => 'bvu', 'EL10Ac4g10220' => 'bvu', 'EL10Ac4g10225' => 'bvu', 'EL10Ac6g15208' => 'bvu', 'EL10Ac9g21858' => 'bvu', 'Eucgr.E01880' => 'egr', 'Eucgr.F03968' => 'egr', 'Eucgr.I01995' => 'egr', 'Eucgr.I01996' => 'egr', 'FAN02G1582' => 'fan', 'FAN02G2392' => 'fan', 'FAN02G2724' => 'fan', 'FAN05G3980' => 'fan', 'FAN05G4760' => 'fan', 'FAN09G0100' => 'fan', 'FAN09G0525' => 'fan', 'FAN09G0865' => 'fan', 'FAN09G1704' => 'fan', 'FAN14G4880' => 'fan', 'FvH4_6g27830' => 'fve', 'FvH4_6g28520' => 'fve', 'FvH4_6g47771' => 'fve', 'FvH4_6g47772' => 'fve', 'Glyma.02G275100' => 'gma', 'Glyma.02G275200' => 'gma', 'Glyma.07G022000' => 'gma', 'Glyma.13G059500' => 'gma', 'Glyma.13G059700' => 'gma', 'Glyma.19G026900' => 'gma', 'Glyma.20G053100' => 'gma', 'Gohir.A05G118500' => 'ghi', 'Gohir.A05G369300' => 'ghi', 'Gohir.A11G071100' => 'ghi', 'Gohir.D04G046100' => 'ghi', 'Gohir.D05G101550' => 'ghi', 'Gohir.D05G119400' => 'ghi', 'Gohir.D11G075000' => 'ghi', 'Gohir.D11G075100' => 'ghi', 'Gorai.007G080600' => 'gra', 'Gorai.007G080700' => 'gra', 'Gorai.009G105700' => 'gra', 'Gorai.009G123000' => 'gra', 'Gorai.012G051300' => 'gra', 'GSVIVG01011475001' => 'vvi', 'GSVIVG01011476001' => 'vvi', 'GSVIVG01015979001' => 'vvi', 'HanXRQChr02g0033981' => 'han', 'HanXRQChr09g0264051' => 'han', 'HanXRQChr09g0264061' => 'han', 'HanXRQChr09g0264071' => 'han', 'HanXRQChr15g0487941' => 'han', 'HanXRQChr15g0487951' => 'han', 'HanXRQChr15g0488411' => 'han', 'Haze_14483' => 'cav', 'Haze_16674' => 'cav', 'Haze_23675' => 'cav', 'Hma1.2p1_0109F.1_g052640' => 'hma', 'Hma1.2p1_0329F.1_g127140' => 'hma', 'Hma1.2p1_2018F.1_g311220' => 'hma', 'Hma1.2p1_2073F.1_g313170' => 'hma', 'HPP92_004699' => 'vpl', 'HPP92_012505' => 'vpl', 'HPP92_027475' => 'vpl', 'Hund00493' => 'sun', 'Hund13178' => 'sun', 'Hund15566' => 'sun', 'Lalb_Chr02g0159091' => 'lal', 'Lalb_Chr02g0159101' => 'lal', 'Lalb_Chr10g0105951' => 'lal', 'Lalb_Chr10g0105961' => 'lal', 'Lalb_Chr17g0347581' => 'lal', 'Lalb_Chr21g0318491' => 'lal', 'Lalb_Chr21g0318501' => 'lal', 'Lalb_Chr21g0318511' => 'lal', 'Lalb_Chr22g0350391' => 'lal', 'Lalb_Chr24g0392821' => 'lal', 'Lj2g0001219' => 'lja', 'Lj2g0024407' => 'lja', 'Lj3g0002956' => 'lja', 'Lj4A114G80' => 'lonja', 'Lj4A114T80' => 'lonja', 'Lj6g0020692' => 'lja', 'Lj9A492T53' => 'lonja', 'LjContig00564g0010296' => 'lja', 'Lsat_1_v5_gn_2_88200' => 'lsa', 'Lsat_1_v5_gn_4_170021' => 'lsa', 'Lsat_1_v5_gn_4_170041' => 'lsa', 'Lsat_1_v5_gn_4_170061' => 'lsa', 'Manes.01G100000' => 'mes', 'Manes.02G050000' => 'mes', 'Manes.02G050100' => 'mes', 'Manes.11G067200' => 'mes', 'Manes.11G114200' => 'mes', 'MBI14_g34253_MAGBIO' => 'mbi', 'MBI15_g18245_MAGBIO' => 'mbi', 'MBI15_g43155_MAGBIO' => 'mbi', 'MD09G1057500' => 'mdo', 'MD09G1057600' => 'mdo', 'MD09G1225200' => 'mdo', 'MD11G1182000' => 'mdo', 'MD15G1314400' => 'mdo', 'MD17G1054300' => 'mdo', 'MD17G1054500' => 'mdo', 'MD17G1223900' => 'mdo', 'Medtr3g117110' => 'mtr', 'Medtr4g007250' => 'mtr', 'Medtr5g087970' => 'mtr', 'Medtr5g088000' => 'mtr', 'Medtr5g088170' => 'mtr', 'Medtr5g088180' => 'mtr', 'Medtr6g013170' => 'mtr', 'Medtr6g013200' => 'mtr', 'Medtr6g013420' => 'mtr', 'MELO3C009833.2' => 'cme', 'MELO3C026734.2' => 'cme', 'MELO3C029408.2' => 'cme', 'MELO3C030977.2' => 'cme', 'Migut.D01128' => 'egut', 'Migut.H00668' => 'egut', 'Migut.H00669' => 'egut', 'MSTRG.23910' => 'ama', 'MSTRG.3026' => 'ama', 'MSTRG.3342' => 'ama', 'MSTRG.4675' => 'ama', 'Nitab4.5_0000568g0290' => 'nta', 'Nitab4.5_0001271g0030' => 'nta', 'Nitab4.5_0001340g0050' => 'nta', 'Nitab4.5_0001591g0040' => 'nta', 'Nn1g04679' => 'nnu', 'Nn2g12397' => 'nnu', 'Nn3g17358' => 'nnu', 'Nn3g17359' => 'nnu', 'Nn3g18234' => 'nnu', 'Nn4g23310' => 'nnu', 'Nn4g23311' => 'nnu', 'Nn4g24563' => 'nnu', 'Nn4g24610' => 'nnu', 'Nn4g26103' => 'nnu', 'Nn6g34237' => 'nnu', 'Nn6g34257' => 'nnu', 'Nn7g36585' => 'nnu', 'Nn8g39909' => 'nnu', 'Oeu000846.1' => 'oeu', 'Oeu000847.1' => 'oeu', 'Oeu020662.1' => 'oeu', 'Oeu023717.1' => 'oeu', 'Oeu028002.1' => 'oeu', 'Oeu035930.1' => 'oeu', 'Oeu051572.1' => 'oeu', 'Os03g0758500' => 'osa', 'Os07g0112700' => 'osa', 'Os09g0557900' => 'osa', 'Peaxi162Scf00166g00921' => 'pax', 'Peaxi162Scf00166g00932' => 'pax', 'Peaxi162Scf00360g00410' => 'pax', 'Peaxi162Scf00553g00527' => 'pax', 'Peaxi162Scf00823g00021' => 'pax', 'Peaxi162Scf01411g00005' => 'pax', 'PGR004G0509' => 'pgr', 'PGR031G0492' => 'pgr', 'PGR056G0002' => 'pgr', 'PGR083G1972' => 'pgr', 'PGR102G2032' => 'pgr', 'PGSC0003DMG400001436' => 'stu', 'PGSC0003DMG400001437' => 'stu', 'PGSC0003DMG400028648' => 'stu', 'Phvul.004G032500' => 'pvu', 'Phvul.004G032800' => 'pvu', 'Phvul.010G162400' => 'pvu', 'Phvul.L003937' => 'pvu', 'Potri.001G043600' => 'ptr', 'Potri.001G219800' => 'ptr', 'Potri.001G219900' => 'ptr', 'Potri.003G183300' => 'ptr', 'Potri.004G121100' => 'ptr', 'Potri.017G088500' => 'ptr', 'Potri.017G088600' => 'ptr', 'Prupe.3G099600' => 'ppe', 'Prupe.3G261600' => 'ppe', 'Prupe.3G261800' => 'ppe', 'Prupe.6G154600' => 'ppe', 'Prupe.6G154700' => 'ppe', 'Psat1g070000' => 'psa', 'Psat1g071320' => 'psa', 'Psat2g021840' => 'psa', 'Psat5g005680' => 'psa', 'Psat7g263160' => 'psa', 'PSO063G0457' => 'pso', 'PSO063G2127' => 'pso', 'PSO063G3556' => 'pso', 'PSO063G4416' => 'pso', 'PSO063G7079' => 'pso', 'PSO339G1054' => 'pso', 'PSO541G2463' => 'pso', 'PSO675G8994' => 'pso', 'PSO782G1371' => 'pso', 'PSO782G1660' => 'pso', 'QL01p020179' => 'qlo', 'QL02p039253' => 'qlo', 'QL03p071147' => 'qlo', 'QL05p035664' => 'qlo', 'RcHm_v2.0_Chr2g0132811' => 'rch', 'RcHm_v2.0_Chr2g0166941' => 'rch', 'RcHm_v2.0_Chr2g0166951' => 'rch', 'RcHm_v2.0_Chr5g0049891' => 'rch', 'Rhsim03G0036900' => 'rsi', 'Rhsim03G0037100' => 'rsi', 'Rhsim03G0037600' => 'rsi', 'Rhsim03G0037700' => 'rsi', 'Rhsim03G0037800' => 'rsi', 'Rhsim03G0037900' => 'rsi', 'Rhsim10G0034800' => 'rsi', 'Rhsim10G0035000' => 'rsi', 'Rhsim12G0187100' => 'rsi', 'Sabra03G0133900' => 'sbr', 'Sabra16G0124400' => 'sbr', 'Sabra16G0124500' => 'sbr', 'Sabra17G0078300' => 'sbr', 'Sabra17G0078400' => 'sbr', 'SalBow1G1337' => 'sbo', 'SalBow1G5006' => 'sbo', 'SalBow1G6468' => 'sbo', 'SalBow1G7371' => 'sbo', 'SalBow1G8395' => 'sbo', 'SalBow6G4665' => 'sbo', 'Sc06g0010770' => 'sci', 'Sc10g0003340' => 'sci', 'Sc12g0008620' => 'sci', 'Sed0003380' => 'sed', 'Sed0006420' => 'sed', 'Sed0008099' => 'sed', 'Sed0012581' => 'sed', 'Sed0015366' => 'sed', 'SEGI_36586' => 'sgi', 'SGA_v2.0_scaffold413G51168' => 'sas', 'SGA_v2.0_scaffold4G02424' => 'sas', 'SHI05053' => 'shi', 'SHI25348' => 'shi', 'SMO171G0082' => 'smo', 'SMO347G0549' => 'smo', 'Solyc02g088380.4' => 'sly', 'Solyc02g088390.4' => 'sly', 'Solyc03g117560.3' => 'sly', 'Solyc12g042580.2' => 'sly', 'Sopen02g033060' => 'spe', 'Sopen02g033070' => 'spe', 'Sopen03g036470' => 'spe', 'Sopen12g021720' => 'spe', 'Sp3g01060' => 'spa', 'Sp4g08250' => 'spa', 'Sp6g28710' => 'spa', 'TAR374G0681' => 'tar', 'TAR622G0505' => 'tar', 'TAR625G0184' => 'tar', 'TAR629G2646' => 'tar', 'THA.LOC104800486' => 'tha', 'THA.LOC104812414' => 'tha', 'THA.LOC104821013' => 'tha', 'THA.LOC104822347' => 'tha', 'Thecc.04G088800' => 'tca', 'Thecc.04G088900' => 'tca', 'Thecc.06G042600' => 'tca', 'Thecc.06G042800' => 'tca', 'Thecc.09G338700' => 'tca', 'Thhalv10002108m.g' => 'esa', 'Thhalv10014831m.g' => 'esa', 'Thhalv10021623m.g' => 'esa', 'TPR.G11307' => 'tpr', 'TPR.G11331' => 'tpr', 'TPR.G16558' => 'tpr', 'TPR.G26217' => 'tpr', 'TPR.G3322' => 'tpr', 'TPR.G36016' => 'tpr', 'TWI18G1326' => 'twi', 'TWI32G0744' => 'twi', 'TWI34G0910' => 'twi', 'TWI34G1935' => 'twi', 'TWI75G1478' => 'twi', 'TWI79G1155' => 'twi', 'TWI79G1404' => 'twi', 'unitig_0.g355' => 'ugi', 'unitig_62.g23439' => 'ugi', 'vmacro05675' => 'vma', 'vmacro05676' => 'vma', 'vmacro16850' => 'vma', 'VMungo0331G0077' => 'vmu', 'VMungo0464G1350' => 'vmu', 'VMungo0464G2065' => 'vmu', 'Zm00001eb057870' => 'zma', 'Zm00001eb152260' => 'zma', 'Zm00001eb298480' => 'zma', 'Zm00001eb320500' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001441' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001441' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001441' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001441' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001441', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p28040' => 'bna', 'A03p07120' => 'bna', 'A03p26780' => 'bna', 'A05p44880' => 'bna', 'A10p23510' => 'bna', 'Aa31LG11G14180' => 'aar', 'Aa31LG5G12550' => 'aar', 'Aa31LG5G8430' => 'aar', 'Aa31LG7G570' => 'aar', 'Actinidia01958' => 'ach', 'Actinidia01959' => 'ach', 'Actinidia06111' => 'ach', 'Actinidia06112' => 'ach', 'Ah.03g140020' => 'amhyb', 'Ah.06g193980' => 'amhyb', 'Ah.10g031860' => 'amhyb', 'Ah.12g062500' => 'amhyb', 'AL3G11190' => 'aly', 'AL4G20570' => 'aly', 'AL6G26230' => 'aly', 'AL9U11630' => 'aly', 'Aqoxy3G00468' => 'aox', 'Aqoxy3G00469' => 'aox', 'Aqoxy3G03524' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7Y0VRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P32VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLF82K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECN0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6LI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYRN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1LFEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJF7LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB99CZ' => 'arhy', 'AT2G27035' => 'ath', 'AT3G01070' => 'ath', 'AT4G12880' => 'ath', 'AT5G15350' => 'ath', 'ATR0580G049' => 'atr', 'ATR0730G065' => 'atr', 'ATR0730G141' => 'atr', 'Atru.chr1.1413' => 'acertr', 'Atru.chr1.2794' => 'acertr', 'Atru.chr8.355' => 'acertr', 'AUR62011464' => 'cqu', 'AUR62016591' => 'cqu', 'AUR62018126' => 'cqu', 'AUR62034459' => 'cqu', 'BcaB01g03039' => 'bca', 'BcaB01g05058' => 'bca', 'BcaB01g05062' => 'bca', 'BcaB07g30555' => 'bca', 'BcaC01g04921' => 'bca', 'BcaC03g13552' => 'bca', 'BcaC03g16605' => 'bca', 'BcaC04g24241' => 'bca', 'BcaC05g30320' => 'bca', 'BcaC05g30377' => 'bca', 'BcaC09g47680' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00060' => 'bna', 'BolC1t05924H' => 'bol', 'BolC2t10471H' => 'bol', 'BolC3t13308H' => 'bol', 'BolC3t15552H' => 'bol', 'BraA01t04635Z' => 'bra', 'BraA02t07842Z' => 'bra', 'BraA03t10034Z' => 'bra', 'BraA03t11889Z' => 'bra', 'BraA05t23169Z' => 'bra', 'C02p44340' => 'bna', 'C03p08110' => 'bna', 'C03p32090' => 'bna', 'C09p61740' => 'bna', 'C09p75460' => 'bna', 'CAN.G206.186' => 'can', 'CAN.G206.187' => 'can', 'CAN.G206.188' => 'can', 'CAN.G407.5' => 'can', 'CAN.G471.2' => 'can', 'CAN.G521.9' => 'can', 'CANSAT54G1924' => 'cansat', 'CANSAT54G2915' => 'cansat', 'CANSAT56G0770' => 'cansat', 'CANSAT64G1363' => 'cansat', 'CANSAT64G1417' => 'cansat', 'CARHR076000' => 'chi', 'CARHR119330' => 'chi', 'CARHR197940' => 'chi', 'Carub.0001s4155' => 'cru', 'Carub.0003s0110' => 'cru', 'Carub.0004s0752' => 'cru', 'Carub.0006s1354' => 'cru', 'Carub.0007s2990' => 'cru', 'Ca_04861_v3' => 'car', 'Ca_06161_v3' => 'car', 'Cc07_g03740' => 'ccan', 'Cc07_g03750' => 'ccan', 'CDE02G1753' => 'cde', 'CDE05G1009' => 'cde', 'CDE11G1175' => 'cde', 'Cfa001874' => 'cfa', 'Cfa007605' => 'cfa', 'Cfa010265' => 'cfa', 'Ciclev10012903m.g' => 'ccl', 'Ciclev10012929m.g' => 'ccl', 'Ciclev10016919m.g' => 'ccl', 'Ciclev10026582m.g' => 'ccl', 'CiPaw.01G255300' => 'cil', 'CiPaw.03G021000' => 'cil', 'CiPaw.04G013900' => 'cil', 'CiPaw.04G014000' => 'cil', 'CiPaw.14G090700' => 'cil', 'ClCG03G014080' => 'cla', 'ClCG10G012890' => 'cla', 'ClCG10G015480' => 'cla', 'ClCG10G015490' => 'cla', 'COL.COLO4_12244' => 'col', 'COL.COLO4_12245' => 'col', 'COL.COLO4_18351' => 'col', 'COL.COLO4_18354' => 'col', 'COL.COLO4_26736' => 'col', 'Cpa.g.sc10.61' => 'cpa', 'CsaV3_1G042160' => 'csa', 'CsaV3_3G032750' => 'csa', 'CsaV3_3G040980' => 'csa', 'CsaV3_3G040990' => 'csa', 'CSS0032145' => 'camsi', 'CSS0032460' => 'camsi', 'CSS0049769' => 'camsi', 'DCAR_011069' => 'dca', 'DCAR_021664' => 'dca', 'DCAR_025560' => 'dca', 'Dinv21415' => 'din', 'Dinv24002' => 'din', 'Dinv33797' => 'din', 'Duzib147G0324' => 'dzi', 'Duzib147G1600' => 'dzi', 'Duzib150G0154' => 'dzi', 'Duzib168G1282' => 'dzi', 'Duzib187G0668' => 'dzi', 'Duzib235G1424' => 'dzi', 'ECA232G0881' => 'eca', 'ECA232G3133' => 'eca', 'EL10Ac2g03037' => 'bvu', 'EL10Ac4g08364' => 'bvu', 'EL10Ac4g10220' => 'bvu', 'EL10Ac4g10225' => 'bvu', 'EL10Ac6g15208' => 'bvu', 'EL10Ac9g21858' => 'bvu', 'Eucgr.E01880' => 'egr', 'Eucgr.F03968' => 'egr', 'Eucgr.I01995' => 'egr', 'Eucgr.I01996' => 'egr', 'FAN02G1582' => 'fan', 'FAN02G2392' => 'fan', 'FAN02G2724' => 'fan', 'FAN05G3980' => 'fan', 'FAN05G4760' => 'fan', 'FAN09G0100' => 'fan', 'FAN09G0525' => 'fan', 'FAN09G0865' => 'fan', 'FAN09G1704' => 'fan', 'FAN14G4880' => 'fan', 'FvH4_6g27830' => 'fve', 'FvH4_6g28520' => 'fve', 'FvH4_6g47771' => 'fve', 'FvH4_6g47772' => 'fve', 'Glyma.02G275100' => 'gma', 'Glyma.02G275200' => 'gma', 'Glyma.07G022000' => 'gma', 'Glyma.13G059500' => 'gma', 'Glyma.13G059700' => 'gma', 'Glyma.19G026900' => 'gma', 'Glyma.20G053100' => 'gma', 'Gohir.A05G118500' => 'ghi', 'Gohir.A05G369300' => 'ghi', 'Gohir.A11G071100' => 'ghi', 'Gohir.D04G046100' => 'ghi', 'Gohir.D05G101550' => 'ghi', 'Gohir.D05G119400' => 'ghi', 'Gohir.D11G075000' => 'ghi', 'Gohir.D11G075100' => 'ghi', 'Gorai.007G080600' => 'gra', 'Gorai.007G080700' => 'gra', 'Gorai.009G105700' => 'gra', 'Gorai.009G123000' => 'gra', 'Gorai.012G051300' => 'gra', 'GSVIVG01011475001' => 'vvi', 'GSVIVG01011476001' => 'vvi', 'GSVIVG01015979001' => 'vvi', 'HanXRQChr02g0033981' => 'han', 'HanXRQChr09g0264051' => 'han', 'HanXRQChr09g0264061' => 'han', 'HanXRQChr09g0264071' => 'han', 'HanXRQChr15g0487941' => 'han', 'HanXRQChr15g0487951' => 'han', 'HanXRQChr15g0488411' => 'han', 'Haze_14483' => 'cav', 'Haze_16674' => 'cav', 'Haze_23675' => 'cav', 'Hma1.2p1_0109F.1_g052640' => 'hma', 'Hma1.2p1_0329F.1_g127140' => 'hma', 'Hma1.2p1_2018F.1_g311220' => 'hma', 'Hma1.2p1_2073F.1_g313170' => 'hma', 'HPP92_004699' => 'vpl', 'HPP92_012505' => 'vpl', 'HPP92_027475' => 'vpl', 'Hund00493' => 'sun', 'Hund13178' => 'sun', 'Hund15566' => 'sun', 'Lalb_Chr02g0159091' => 'lal', 'Lalb_Chr02g0159101' => 'lal', 'Lalb_Chr10g0105951' => 'lal', 'Lalb_Chr10g0105961' => 'lal', 'Lalb_Chr17g0347581' => 'lal', 'Lalb_Chr21g0318491' => 'lal', 'Lalb_Chr21g0318501' => 'lal', 'Lalb_Chr21g0318511' => 'lal', 'Lalb_Chr22g0350391' => 'lal', 'Lalb_Chr24g0392821' => 'lal', 'Lj2g0001219' => 'lja', 'Lj2g0024407' => 'lja', 'Lj3g0002956' => 'lja', 'Lj4A114G80' => 'lonja', 'Lj4A114T80' => 'lonja', 'Lj6g0020692' => 'lja', 'Lj9A492T53' => 'lonja', 'LjContig00564g0010296' => 'lja', 'Lsat_1_v5_gn_2_88200' => 'lsa', 'Lsat_1_v5_gn_4_170021' => 'lsa', 'Lsat_1_v5_gn_4_170041' => 'lsa', 'Lsat_1_v5_gn_4_170061' => 'lsa', 'Manes.01G100000' => 'mes', 'Manes.02G050000' => 'mes', 'Manes.02G050100' => 'mes', 'Manes.11G067200' => 'mes', 'Manes.11G114200' => 'mes', 'MBI14_g34253_MAGBIO' => 'mbi', 'MBI15_g18245_MAGBIO' => 'mbi', 'MBI15_g43155_MAGBIO' => 'mbi', 'MD09G1057500' => 'mdo', 'MD09G1057600' => 'mdo', 'MD09G1225200' => 'mdo', 'MD11G1182000' => 'mdo', 'MD15G1314400' => 'mdo', 'MD17G1054300' => 'mdo', 'MD17G1054500' => 'mdo', 'MD17G1223900' => 'mdo', 'Medtr3g117110' => 'mtr', 'Medtr4g007250' => 'mtr', 'Medtr5g087970' => 'mtr', 'Medtr5g088000' => 'mtr', 'Medtr5g088170' => 'mtr', 'Medtr5g088180' => 'mtr', 'Medtr6g013170' => 'mtr', 'Medtr6g013200' => 'mtr', 'Medtr6g013420' => 'mtr', 'MELO3C009833.2' => 'cme', 'MELO3C026734.2' => 'cme', 'MELO3C029408.2' => 'cme', 'MELO3C030977.2' => 'cme', 'Migut.D01128' => 'egut', 'Migut.H00668' => 'egut', 'Migut.H00669' => 'egut', 'MSTRG.23910' => 'ama', 'MSTRG.3026' => 'ama', 'MSTRG.3342' => 'ama', 'MSTRG.4675' => 'ama', 'Nitab4.5_0000568g0290' => 'nta', 'Nitab4.5_0001271g0030' => 'nta', 'Nitab4.5_0001340g0050' => 'nta', 'Nitab4.5_0001591g0040' => 'nta', 'Nn1g04679' => 'nnu', 'Nn2g12397' => 'nnu', 'Nn3g17358' => 'nnu', 'Nn3g17359' => 'nnu', 'Nn3g18234' => 'nnu', 'Nn4g23310' => 'nnu', 'Nn4g23311' => 'nnu', 'Nn4g24563' => 'nnu', 'Nn4g24610' => 'nnu', 'Nn4g26103' => 'nnu', 'Nn6g34237' => 'nnu', 'Nn6g34257' => 'nnu', 'Nn7g36585' => 'nnu', 'Nn8g39909' => 'nnu', 'Oeu000846.1' => 'oeu', 'Oeu000847.1' => 'oeu', 'Oeu020662.1' => 'oeu', 'Oeu023717.1' => 'oeu', 'Oeu028002.1' => 'oeu', 'Oeu035930.1' => 'oeu', 'Oeu051572.1' => 'oeu', 'Os03g0758500' => 'osa', 'Os07g0112700' => 'osa', 'Os09g0557900' => 'osa', 'Peaxi162Scf00166g00921' => 'pax', 'Peaxi162Scf00166g00932' => 'pax', 'Peaxi162Scf00360g00410' => 'pax', 'Peaxi162Scf00553g00527' => 'pax', 'Peaxi162Scf00823g00021' => 'pax', 'Peaxi162Scf01411g00005' => 'pax', 'PGR004G0509' => 'pgr', 'PGR031G0492' => 'pgr', 'PGR056G0002' => 'pgr', 'PGR083G1972' => 'pgr', 'PGR102G2032' => 'pgr', 'PGSC0003DMG400001436' => 'stu', 'PGSC0003DMG400001437' => 'stu', 'PGSC0003DMG400028648' => 'stu', 'Phvul.004G032500' => 'pvu', 'Phvul.004G032800' => 'pvu', 'Phvul.010G162400' => 'pvu', 'Phvul.L003937' => 'pvu', 'Potri.001G043600' => 'ptr', 'Potri.001G219800' => 'ptr', 'Potri.001G219900' => 'ptr', 'Potri.003G183300' => 'ptr', 'Potri.004G121100' => 'ptr', 'Potri.017G088500' => 'ptr', 'Potri.017G088600' => 'ptr', 'Prupe.3G099600' => 'ppe', 'Prupe.3G261600' => 'ppe', 'Prupe.3G261800' => 'ppe', 'Prupe.6G154600' => 'ppe', 'Prupe.6G154700' => 'ppe', 'Psat1g070000' => 'psa', 'Psat1g071320' => 'psa', 'Psat2g021840' => 'psa', 'Psat5g005680' => 'psa', 'Psat7g263160' => 'psa', 'PSO063G0457' => 'pso', 'PSO063G2127' => 'pso', 'PSO063G3556' => 'pso', 'PSO063G4416' => 'pso', 'PSO063G7079' => 'pso', 'PSO339G1054' => 'pso', 'PSO541G2463' => 'pso', 'PSO675G8994' => 'pso', 'PSO782G1371' => 'pso', 'PSO782G1660' => 'pso', 'QL01p020179' => 'qlo', 'QL02p039253' => 'qlo', 'QL03p071147' => 'qlo', 'QL05p035664' => 'qlo', 'RcHm_v2.0_Chr2g0132811' => 'rch', 'RcHm_v2.0_Chr2g0166941' => 'rch', 'RcHm_v2.0_Chr2g0166951' => 'rch', 'RcHm_v2.0_Chr5g0049891' => 'rch', 'Rhsim03G0036900' => 'rsi', 'Rhsim03G0037100' => 'rsi', 'Rhsim03G0037600' => 'rsi', 'Rhsim03G0037700' => 'rsi', 'Rhsim03G0037800' => 'rsi', 'Rhsim03G0037900' => 'rsi', 'Rhsim10G0034800' => 'rsi', 'Rhsim10G0035000' => 'rsi', 'Rhsim12G0187100' => 'rsi', 'Sabra03G0133900' => 'sbr', 'Sabra16G0124400' => 'sbr', 'Sabra16G0124500' => 'sbr', 'Sabra17G0078300' => 'sbr', 'Sabra17G0078400' => 'sbr', 'SalBow1G1337' => 'sbo', 'SalBow1G5006' => 'sbo', 'SalBow1G6468' => 'sbo', 'SalBow1G7371' => 'sbo', 'SalBow1G8395' => 'sbo', 'SalBow6G4665' => 'sbo', 'Sc06g0010770' => 'sci', 'Sc10g0003340' => 'sci', 'Sc12g0008620' => 'sci', 'Sed0003380' => 'sed', 'Sed0006420' => 'sed', 'Sed0008099' => 'sed', 'Sed0012581' => 'sed', 'Sed0015366' => 'sed', 'SEGI_36586' => 'sgi', 'SGA_v2.0_scaffold413G51168' => 'sas', 'SGA_v2.0_scaffold4G02424' => 'sas', 'SHI05053' => 'shi', 'SHI25348' => 'shi', 'SMO171G0082' => 'smo', 'SMO347G0549' => 'smo', 'Solyc02g088380.4' => 'sly', 'Solyc02g088390.4' => 'sly', 'Solyc03g117560.3' => 'sly', 'Solyc12g042580.2' => 'sly', 'Sopen02g033060' => 'spe', 'Sopen02g033070' => 'spe', 'Sopen03g036470' => 'spe', 'Sopen12g021720' => 'spe', 'Sp3g01060' => 'spa', 'Sp4g08250' => 'spa', 'Sp6g28710' => 'spa', 'TAR374G0681' => 'tar', 'TAR622G0505' => 'tar', 'TAR625G0184' => 'tar', 'TAR629G2646' => 'tar', 'THA.LOC104800486' => 'tha', 'THA.LOC104812414' => 'tha', 'THA.LOC104821013' => 'tha', 'THA.LOC104822347' => 'tha', 'Thecc.04G088800' => 'tca', 'Thecc.04G088900' => 'tca', 'Thecc.06G042600' => 'tca', 'Thecc.06G042800' => 'tca', 'Thecc.09G338700' => 'tca', 'Thhalv10002108m.g' => 'esa', 'Thhalv10014831m.g' => 'esa', 'Thhalv10021623m.g' => 'esa', 'TPR.G11307' => 'tpr', 'TPR.G11331' => 'tpr', 'TPR.G16558' => 'tpr', 'TPR.G26217' => 'tpr', 'TPR.G3322' => 'tpr', 'TPR.G36016' => 'tpr', 'TWI18G1326' => 'twi', 'TWI32G0744' => 'twi', 'TWI34G0910' => 'twi', 'TWI34G1935' => 'twi', 'TWI75G1478' => 'twi', 'TWI79G1155' => 'twi', 'TWI79G1404' => 'twi', 'unitig_0.g355' => 'ugi', 'unitig_62.g23439' => 'ugi', 'vmacro05675' => 'vma', 'vmacro05676' => 'vma', 'vmacro16850' => 'vma', 'VMungo0331G0077' => 'vmu', 'VMungo0464G1350' => 'vmu', 'VMungo0464G2065' => 'vmu', 'Zm00001eb057870' => 'zma', 'Zm00001eb152260' => 'zma', 'Zm00001eb298480' => 'zma', 'Zm00001eb320500' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001441', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001441' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001441', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001441' ) ), 'genes' => array( 'A02p28040' => 'bna', 'A03p07120' => 'bna', 'A03p26780' => 'bna', 'A05p44880' => 'bna', 'A10p23510' => 'bna', 'Aa31LG11G14180' => 'aar', 'Aa31LG5G12550' => 'aar', 'Aa31LG5G8430' => 'aar', 'Aa31LG7G570' => 'aar', 'Actinidia01958' => 'ach', 'Actinidia01959' => 'ach', 'Actinidia06111' => 'ach', 'Actinidia06112' => 'ach', 'Ah.03g140020' => 'amhyb', 'Ah.06g193980' => 'amhyb', 'Ah.10g031860' => 'amhyb', 'Ah.12g062500' => 'amhyb', 'AL3G11190' => 'aly', 'AL4G20570' => 'aly', 'AL6G26230' => 'aly', 'AL9U11630' => 'aly', 'Aqoxy3G00468' => 'aox', 'Aqoxy3G00469' => 'aox', 'Aqoxy3G03524' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7Y0VRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P32VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLF82K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECN0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6LI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYRN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1LFEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJF7LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB99CZ' => 'arhy', 'AT2G27035' => 'ath', 'AT3G01070' => 'ath', 'AT4G12880' => 'ath', 'AT5G15350' => 'ath', 'ATR0580G049' => 'atr', 'ATR0730G065' => 'atr', 'ATR0730G141' => 'atr', 'Atru.chr1.1413' => 'acertr', 'Atru.chr1.2794' => 'acertr', 'Atru.chr8.355' => 'acertr', 'AUR62011464' => 'cqu', 'AUR62016591' => 'cqu', 'AUR62018126' => 'cqu', 'AUR62034459' => 'cqu', 'BcaB01g03039' => 'bca', 'BcaB01g05058' => 'bca', 'BcaB01g05062' => 'bca', 'BcaB07g30555' => 'bca', 'BcaC01g04921' => 'bca', 'BcaC03g13552' => 'bca', 'BcaC03g16605' => 'bca', 'BcaC04g24241' => 'bca', 'BcaC05g30320' => 'bca', 'BcaC05g30377' => 'bca', 'BcaC09g47680' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00060' => 'bna', 'BolC1t05924H' => 'bol', 'BolC2t10471H' => 'bol', 'BolC3t13308H' => 'bol', 'BolC3t15552H' => 'bol', 'BraA01t04635Z' => 'bra', 'BraA02t07842Z' => 'bra', 'BraA03t10034Z' => 'bra', 'BraA03t11889Z' => 'bra', 'BraA05t23169Z' => 'bra', 'C02p44340' => 'bna', 'C03p08110' => 'bna', 'C03p32090' => 'bna', 'C09p61740' => 'bna', 'C09p75460' => 'bna', 'CAN.G206.186' => 'can', 'CAN.G206.187' => 'can', 'CAN.G206.188' => 'can', 'CAN.G407.5' => 'can', 'CAN.G471.2' => 'can', 'CAN.G521.9' => 'can', 'CANSAT54G1924' => 'cansat', 'CANSAT54G2915' => 'cansat', 'CANSAT56G0770' => 'cansat', 'CANSAT64G1363' => 'cansat', 'CANSAT64G1417' => 'cansat', 'CARHR076000' => 'chi', 'CARHR119330' => 'chi', 'CARHR197940' => 'chi', 'Carub.0001s4155' => 'cru', 'Carub.0003s0110' => 'cru', 'Carub.0004s0752' => 'cru', 'Carub.0006s1354' => 'cru', 'Carub.0007s2990' => 'cru', 'Ca_04861_v3' => 'car', 'Ca_06161_v3' => 'car', 'Cc07_g03740' => 'ccan', 'Cc07_g03750' => 'ccan', 'CDE02G1753' => 'cde', 'CDE05G1009' => 'cde', 'CDE11G1175' => 'cde', 'Cfa001874' => 'cfa', 'Cfa007605' => 'cfa', 'Cfa010265' => 'cfa', 'Ciclev10012903m.g' => 'ccl', 'Ciclev10012929m.g' => 'ccl', 'Ciclev10016919m.g' => 'ccl', 'Ciclev10026582m.g' => 'ccl', 'CiPaw.01G255300' => 'cil', 'CiPaw.03G021000' => 'cil', 'CiPaw.04G013900' => 'cil', 'CiPaw.04G014000' => 'cil', 'CiPaw.14G090700' => 'cil', 'ClCG03G014080' => 'cla', 'ClCG10G012890' => 'cla', 'ClCG10G015480' => 'cla', 'ClCG10G015490' => 'cla', 'COL.COLO4_12244' => 'col', 'COL.COLO4_12245' => 'col', 'COL.COLO4_18351' => 'col', 'COL.COLO4_18354' => 'col', 'COL.COLO4_26736' => 'col', 'Cpa.g.sc10.61' => 'cpa', 'CsaV3_1G042160' => 'csa', 'CsaV3_3G032750' => 'csa', 'CsaV3_3G040980' => 'csa', 'CsaV3_3G040990' => 'csa', 'CSS0032145' => 'camsi', 'CSS0032460' => 'camsi', 'CSS0049769' => 'camsi', 'DCAR_011069' => 'dca', 'DCAR_021664' => 'dca', 'DCAR_025560' => 'dca', 'Dinv21415' => 'din', 'Dinv24002' => 'din', 'Dinv33797' => 'din', 'Duzib147G0324' => 'dzi', 'Duzib147G1600' => 'dzi', 'Duzib150G0154' => 'dzi', 'Duzib168G1282' => 'dzi', 'Duzib187G0668' => 'dzi', 'Duzib235G1424' => 'dzi', 'ECA232G0881' => 'eca', 'ECA232G3133' => 'eca', 'EL10Ac2g03037' => 'bvu', 'EL10Ac4g08364' => 'bvu', 'EL10Ac4g10220' => 'bvu', 'EL10Ac4g10225' => 'bvu', 'EL10Ac6g15208' => 'bvu', 'EL10Ac9g21858' => 'bvu', 'Eucgr.E01880' => 'egr', 'Eucgr.F03968' => 'egr', 'Eucgr.I01995' => 'egr', 'Eucgr.I01996' => 'egr', 'FAN02G1582' => 'fan', 'FAN02G2392' => 'fan', 'FAN02G2724' => 'fan', 'FAN05G3980' => 'fan', 'FAN05G4760' => 'fan', 'FAN09G0100' => 'fan', 'FAN09G0525' => 'fan', 'FAN09G0865' => 'fan', 'FAN09G1704' => 'fan', 'FAN14G4880' => 'fan', 'FvH4_6g27830' => 'fve', 'FvH4_6g28520' => 'fve', 'FvH4_6g47771' => 'fve', 'FvH4_6g47772' => 'fve', 'Glyma.02G275100' => 'gma', 'Glyma.02G275200' => 'gma', 'Glyma.07G022000' => 'gma', 'Glyma.13G059500' => 'gma', 'Glyma.13G059700' => 'gma', 'Glyma.19G026900' => 'gma', 'Glyma.20G053100' => 'gma', 'Gohir.A05G118500' => 'ghi', 'Gohir.A05G369300' => 'ghi', 'Gohir.A11G071100' => 'ghi', 'Gohir.D04G046100' => 'ghi', 'Gohir.D05G101550' => 'ghi', 'Gohir.D05G119400' => 'ghi', 'Gohir.D11G075000' => 'ghi', 'Gohir.D11G075100' => 'ghi', 'Gorai.007G080600' => 'gra', 'Gorai.007G080700' => 'gra', 'Gorai.009G105700' => 'gra', 'Gorai.009G123000' => 'gra', 'Gorai.012G051300' => 'gra', 'GSVIVG01011475001' => 'vvi', 'GSVIVG01011476001' => 'vvi', 'GSVIVG01015979001' => 'vvi', 'HanXRQChr02g0033981' => 'han', 'HanXRQChr09g0264051' => 'han', 'HanXRQChr09g0264061' => 'han', 'HanXRQChr09g0264071' => 'han', 'HanXRQChr15g0487941' => 'han', 'HanXRQChr15g0487951' => 'han', 'HanXRQChr15g0488411' => 'han', 'Haze_14483' => 'cav', 'Haze_16674' => 'cav', 'Haze_23675' => 'cav', 'Hma1.2p1_0109F.1_g052640' => 'hma', 'Hma1.2p1_0329F.1_g127140' => 'hma', 'Hma1.2p1_2018F.1_g311220' => 'hma', 'Hma1.2p1_2073F.1_g313170' => 'hma', 'HPP92_004699' => 'vpl', 'HPP92_012505' => 'vpl', 'HPP92_027475' => 'vpl', 'Hund00493' => 'sun', 'Hund13178' => 'sun', 'Hund15566' => 'sun', 'Lalb_Chr02g0159091' => 'lal', 'Lalb_Chr02g0159101' => 'lal', 'Lalb_Chr10g0105951' => 'lal', 'Lalb_Chr10g0105961' => 'lal', 'Lalb_Chr17g0347581' => 'lal', 'Lalb_Chr21g0318491' => 'lal', 'Lalb_Chr21g0318501' => 'lal', 'Lalb_Chr21g0318511' => 'lal', 'Lalb_Chr22g0350391' => 'lal', 'Lalb_Chr24g0392821' => 'lal', 'Lj2g0001219' => 'lja', 'Lj2g0024407' => 'lja', 'Lj3g0002956' => 'lja', 'Lj4A114G80' => 'lonja', 'Lj4A114T80' => 'lonja', 'Lj6g0020692' => 'lja', 'Lj9A492T53' => 'lonja', 'LjContig00564g0010296' => 'lja', 'Lsat_1_v5_gn_2_88200' => 'lsa', 'Lsat_1_v5_gn_4_170021' => 'lsa', 'Lsat_1_v5_gn_4_170041' => 'lsa', 'Lsat_1_v5_gn_4_170061' => 'lsa', 'Manes.01G100000' => 'mes', 'Manes.02G050000' => 'mes', 'Manes.02G050100' => 'mes', 'Manes.11G067200' => 'mes', 'Manes.11G114200' => 'mes', 'MBI14_g34253_MAGBIO' => 'mbi', 'MBI15_g18245_MAGBIO' => 'mbi', 'MBI15_g43155_MAGBIO' => 'mbi', 'MD09G1057500' => 'mdo', 'MD09G1057600' => 'mdo', 'MD09G1225200' => 'mdo', 'MD11G1182000' => 'mdo', 'MD15G1314400' => 'mdo', 'MD17G1054300' => 'mdo', 'MD17G1054500' => 'mdo', 'MD17G1223900' => 'mdo', 'Medtr3g117110' => 'mtr', 'Medtr4g007250' => 'mtr', 'Medtr5g087970' => 'mtr', 'Medtr5g088000' => 'mtr', 'Medtr5g088170' => 'mtr', 'Medtr5g088180' => 'mtr', 'Medtr6g013170' => 'mtr', 'Medtr6g013200' => 'mtr', 'Medtr6g013420' => 'mtr', 'MELO3C009833.2' => 'cme', 'MELO3C026734.2' => 'cme', 'MELO3C029408.2' => 'cme', 'MELO3C030977.2' => 'cme', 'Migut.D01128' => 'egut', 'Migut.H00668' => 'egut', 'Migut.H00669' => 'egut', 'MSTRG.23910' => 'ama', 'MSTRG.3026' => 'ama', 'MSTRG.3342' => 'ama', 'MSTRG.4675' => 'ama', 'Nitab4.5_0000568g0290' => 'nta', 'Nitab4.5_0001271g0030' => 'nta', 'Nitab4.5_0001340g0050' => 'nta', 'Nitab4.5_0001591g0040' => 'nta', 'Nn1g04679' => 'nnu', 'Nn2g12397' => 'nnu', 'Nn3g17358' => 'nnu', 'Nn3g17359' => 'nnu', 'Nn3g18234' => 'nnu', 'Nn4g23310' => 'nnu', 'Nn4g23311' => 'nnu', 'Nn4g24563' => 'nnu', 'Nn4g24610' => 'nnu', 'Nn4g26103' => 'nnu', 'Nn6g34237' => 'nnu', 'Nn6g34257' => 'nnu', 'Nn7g36585' => 'nnu', 'Nn8g39909' => 'nnu', 'Oeu000846.1' => 'oeu', 'Oeu000847.1' => 'oeu', 'Oeu020662.1' => 'oeu', 'Oeu023717.1' => 'oeu', 'Oeu028002.1' => 'oeu', 'Oeu035930.1' => 'oeu', 'Oeu051572.1' => 'oeu', 'Os03g0758500' => 'osa', 'Os07g0112700' => 'osa', 'Os09g0557900' => 'osa', 'Peaxi162Scf00166g00921' => 'pax', 'Peaxi162Scf00166g00932' => 'pax', 'Peaxi162Scf00360g00410' => 'pax', 'Peaxi162Scf00553g00527' => 'pax', 'Peaxi162Scf00823g00021' => 'pax', 'Peaxi162Scf01411g00005' => 'pax', 'PGR004G0509' => 'pgr', 'PGR031G0492' => 'pgr', 'PGR056G0002' => 'pgr', 'PGR083G1972' => 'pgr', 'PGR102G2032' => 'pgr', 'PGSC0003DMG400001436' => 'stu', 'PGSC0003DMG400001437' => 'stu', 'PGSC0003DMG400028648' => 'stu', 'Phvul.004G032500' => 'pvu', 'Phvul.004G032800' => 'pvu', 'Phvul.010G162400' => 'pvu', 'Phvul.L003937' => 'pvu', 'Potri.001G043600' => 'ptr', 'Potri.001G219800' => 'ptr', 'Potri.001G219900' => 'ptr', 'Potri.003G183300' => 'ptr', 'Potri.004G121100' => 'ptr', 'Potri.017G088500' => 'ptr', 'Potri.017G088600' => 'ptr', 'Prupe.3G099600' => 'ppe', 'Prupe.3G261600' => 'ppe', 'Prupe.3G261800' => 'ppe', 'Prupe.6G154600' => 'ppe', 'Prupe.6G154700' => 'ppe', 'Psat1g070000' => 'psa', 'Psat1g071320' => 'psa', 'Psat2g021840' => 'psa', 'Psat5g005680' => 'psa', 'Psat7g263160' => 'psa', 'PSO063G0457' => 'pso', 'PSO063G2127' => 'pso', 'PSO063G3556' => 'pso', 'PSO063G4416' => 'pso', 'PSO063G7079' => 'pso', 'PSO339G1054' => 'pso', 'PSO541G2463' => 'pso', 'PSO675G8994' => 'pso', 'PSO782G1371' => 'pso', 'PSO782G1660' => 'pso', 'QL01p020179' => 'qlo', 'QL02p039253' => 'qlo', 'QL03p071147' => 'qlo', 'QL05p035664' => 'qlo', 'RcHm_v2.0_Chr2g0132811' => 'rch', 'RcHm_v2.0_Chr2g0166941' => 'rch', 'RcHm_v2.0_Chr2g0166951' => 'rch', 'RcHm_v2.0_Chr5g0049891' => 'rch', 'Rhsim03G0036900' => 'rsi', 'Rhsim03G0037100' => 'rsi', 'Rhsim03G0037600' => 'rsi', 'Rhsim03G0037700' => 'rsi', 'Rhsim03G0037800' => 'rsi', 'Rhsim03G0037900' => 'rsi', 'Rhsim10G0034800' => 'rsi', 'Rhsim10G0035000' => 'rsi', 'Rhsim12G0187100' => 'rsi', 'Sabra03G0133900' => 'sbr', 'Sabra16G0124400' => 'sbr', 'Sabra16G0124500' => 'sbr', 'Sabra17G0078300' => 'sbr', 'Sabra17G0078400' => 'sbr', 'SalBow1G1337' => 'sbo', 'SalBow1G5006' => 'sbo', 'SalBow1G6468' => 'sbo', 'SalBow1G7371' => 'sbo', 'SalBow1G8395' => 'sbo', 'SalBow6G4665' => 'sbo', 'Sc06g0010770' => 'sci', 'Sc10g0003340' => 'sci', 'Sc12g0008620' => 'sci', 'Sed0003380' => 'sed', 'Sed0006420' => 'sed', 'Sed0008099' => 'sed', 'Sed0012581' => 'sed', 'Sed0015366' => 'sed', 'SEGI_36586' => 'sgi', 'SGA_v2.0_scaffold413G51168' => 'sas', 'SGA_v2.0_scaffold4G02424' => 'sas', 'SHI05053' => 'shi', 'SHI25348' => 'shi', 'SMO171G0082' => 'smo', 'SMO347G0549' => 'smo', 'Solyc02g088380.4' => 'sly', 'Solyc02g088390.4' => 'sly', 'Solyc03g117560.3' => 'sly', 'Solyc12g042580.2' => 'sly', 'Sopen02g033060' => 'spe', 'Sopen02g033070' => 'spe', 'Sopen03g036470' => 'spe', 'Sopen12g021720' => 'spe', 'Sp3g01060' => 'spa', 'Sp4g08250' => 'spa', 'Sp6g28710' => 'spa', 'TAR374G0681' => 'tar', 'TAR622G0505' => 'tar', 'TAR625G0184' => 'tar', 'TAR629G2646' => 'tar', 'THA.LOC104800486' => 'tha', 'THA.LOC104812414' => 'tha', 'THA.LOC104821013' => 'tha', 'THA.LOC104822347' => 'tha', 'Thecc.04G088800' => 'tca', 'Thecc.04G088900' => 'tca', 'Thecc.06G042600' => 'tca', 'Thecc.06G042800' => 'tca', 'Thecc.09G338700' => 'tca', 'Thhalv10002108m.g' => 'esa', 'Thhalv10014831m.g' => 'esa', 'Thhalv10021623m.g' => 'esa', 'TPR.G11307' => 'tpr', 'TPR.G11331' => 'tpr', 'TPR.G16558' => 'tpr', 'TPR.G26217' => 'tpr', 'TPR.G3322' => 'tpr', 'TPR.G36016' => 'tpr', 'TWI18G1326' => 'twi', 'TWI32G0744' => 'twi', 'TWI34G0910' => 'twi', 'TWI34G1935' => 'twi', 'TWI75G1478' => 'twi', 'TWI79G1155' => 'twi', 'TWI79G1404' => 'twi', 'unitig_0.g355' => 'ugi', 'unitig_62.g23439' => 'ugi', 'vmacro05675' => 'vma', 'vmacro05676' => 'vma', 'vmacro16850' => 'vma', 'VMungo0331G0077' => 'vmu', 'VMungo0464G1350' => 'vmu', 'VMungo0464G2065' => 'vmu', 'Zm00001eb057870' => 'zma', 'Zm00001eb152260' => 'zma', 'Zm00001eb298480' => 'zma', 'Zm00001eb320500' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001441' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001441' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001441' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001441' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001441', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p28040' => 'bna', 'A03p07120' => 'bna', 'A03p26780' => 'bna', 'A05p44880' => 'bna', 'A10p23510' => 'bna', 'Aa31LG11G14180' => 'aar', 'Aa31LG5G12550' => 'aar', 'Aa31LG5G8430' => 'aar', 'Aa31LG7G570' => 'aar', 'Actinidia01958' => 'ach', 'Actinidia01959' => 'ach', 'Actinidia06111' => 'ach', 'Actinidia06112' => 'ach', 'Ah.03g140020' => 'amhyb', 'Ah.06g193980' => 'amhyb', 'Ah.10g031860' => 'amhyb', 'Ah.12g062500' => 'amhyb', 'AL3G11190' => 'aly', 'AL4G20570' => 'aly', 'AL6G26230' => 'aly', 'AL9U11630' => 'aly', 'Aqoxy3G00468' => 'aox', 'Aqoxy3G00469' => 'aox', 'Aqoxy3G03524' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7Y0VRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P32VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLF82K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECN0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6LI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYRN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1LFEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJF7LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB99CZ' => 'arhy', 'AT2G27035' => 'ath', 'AT3G01070' => 'ath', 'AT4G12880' => 'ath', 'AT5G15350' => 'ath', 'ATR0580G049' => 'atr', 'ATR0730G065' => 'atr', 'ATR0730G141' => 'atr', 'Atru.chr1.1413' => 'acertr', 'Atru.chr1.2794' => 'acertr', 'Atru.chr8.355' => 'acertr', 'AUR62011464' => 'cqu', 'AUR62016591' => 'cqu', 'AUR62018126' => 'cqu', 'AUR62034459' => 'cqu', 'BcaB01g03039' => 'bca', 'BcaB01g05058' => 'bca', 'BcaB01g05062' => 'bca', 'BcaB07g30555' => 'bca', 'BcaC01g04921' => 'bca', 'BcaC03g13552' => 'bca', 'BcaC03g16605' => 'bca', 'BcaC04g24241' => 'bca', 'BcaC05g30320' => 'bca', 'BcaC05g30377' => 'bca', 'BcaC09g47680' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00060' => 'bna', 'BolC1t05924H' => 'bol', 'BolC2t10471H' => 'bol', 'BolC3t13308H' => 'bol', 'BolC3t15552H' => 'bol', 'BraA01t04635Z' => 'bra', 'BraA02t07842Z' => 'bra', 'BraA03t10034Z' => 'bra', 'BraA03t11889Z' => 'bra', 'BraA05t23169Z' => 'bra', 'C02p44340' => 'bna', 'C03p08110' => 'bna', 'C03p32090' => 'bna', 'C09p61740' => 'bna', 'C09p75460' => 'bna', 'CAN.G206.186' => 'can', 'CAN.G206.187' => 'can', 'CAN.G206.188' => 'can', 'CAN.G407.5' => 'can', 'CAN.G471.2' => 'can', 'CAN.G521.9' => 'can', 'CANSAT54G1924' => 'cansat', 'CANSAT54G2915' => 'cansat', 'CANSAT56G0770' => 'cansat', 'CANSAT64G1363' => 'cansat', 'CANSAT64G1417' => 'cansat', 'CARHR076000' => 'chi', 'CARHR119330' => 'chi', 'CARHR197940' => 'chi', 'Carub.0001s4155' => 'cru', 'Carub.0003s0110' => 'cru', 'Carub.0004s0752' => 'cru', 'Carub.0006s1354' => 'cru', 'Carub.0007s2990' => 'cru', 'Ca_04861_v3' => 'car', 'Ca_06161_v3' => 'car', 'Cc07_g03740' => 'ccan', 'Cc07_g03750' => 'ccan', 'CDE02G1753' => 'cde', 'CDE05G1009' => 'cde', 'CDE11G1175' => 'cde', 'Cfa001874' => 'cfa', 'Cfa007605' => 'cfa', 'Cfa010265' => 'cfa', 'Ciclev10012903m.g' => 'ccl', 'Ciclev10012929m.g' => 'ccl', 'Ciclev10016919m.g' => 'ccl', 'Ciclev10026582m.g' => 'ccl', 'CiPaw.01G255300' => 'cil', 'CiPaw.03G021000' => 'cil', 'CiPaw.04G013900' => 'cil', 'CiPaw.04G014000' => 'cil', 'CiPaw.14G090700' => 'cil', 'ClCG03G014080' => 'cla', 'ClCG10G012890' => 'cla', 'ClCG10G015480' => 'cla', 'ClCG10G015490' => 'cla', 'COL.COLO4_12244' => 'col', 'COL.COLO4_12245' => 'col', 'COL.COLO4_18351' => 'col', 'COL.COLO4_18354' => 'col', 'COL.COLO4_26736' => 'col', 'Cpa.g.sc10.61' => 'cpa', 'CsaV3_1G042160' => 'csa', 'CsaV3_3G032750' => 'csa', 'CsaV3_3G040980' => 'csa', 'CsaV3_3G040990' => 'csa', 'CSS0032145' => 'camsi', 'CSS0032460' => 'camsi', 'CSS0049769' => 'camsi', 'DCAR_011069' => 'dca', 'DCAR_021664' => 'dca', 'DCAR_025560' => 'dca', 'Dinv21415' => 'din', 'Dinv24002' => 'din', 'Dinv33797' => 'din', 'Duzib147G0324' => 'dzi', 'Duzib147G1600' => 'dzi', 'Duzib150G0154' => 'dzi', 'Duzib168G1282' => 'dzi', 'Duzib187G0668' => 'dzi', 'Duzib235G1424' => 'dzi', 'ECA232G0881' => 'eca', 'ECA232G3133' => 'eca', 'EL10Ac2g03037' => 'bvu', 'EL10Ac4g08364' => 'bvu', 'EL10Ac4g10220' => 'bvu', 'EL10Ac4g10225' => 'bvu', 'EL10Ac6g15208' => 'bvu', 'EL10Ac9g21858' => 'bvu', 'Eucgr.E01880' => 'egr', 'Eucgr.F03968' => 'egr', 'Eucgr.I01995' => 'egr', 'Eucgr.I01996' => 'egr', 'FAN02G1582' => 'fan', 'FAN02G2392' => 'fan', 'FAN02G2724' => 'fan', 'FAN05G3980' => 'fan', 'FAN05G4760' => 'fan', 'FAN09G0100' => 'fan', 'FAN09G0525' => 'fan', 'FAN09G0865' => 'fan', 'FAN09G1704' => 'fan', 'FAN14G4880' => 'fan', 'FvH4_6g27830' => 'fve', 'FvH4_6g28520' => 'fve', 'FvH4_6g47771' => 'fve', 'FvH4_6g47772' => 'fve', 'Glyma.02G275100' => 'gma', 'Glyma.02G275200' => 'gma', 'Glyma.07G022000' => 'gma', 'Glyma.13G059500' => 'gma', 'Glyma.13G059700' => 'gma', 'Glyma.19G026900' => 'gma', 'Glyma.20G053100' => 'gma', 'Gohir.A05G118500' => 'ghi', 'Gohir.A05G369300' => 'ghi', 'Gohir.A11G071100' => 'ghi', 'Gohir.D04G046100' => 'ghi', 'Gohir.D05G101550' => 'ghi', 'Gohir.D05G119400' => 'ghi', 'Gohir.D11G075000' => 'ghi', 'Gohir.D11G075100' => 'ghi', 'Gorai.007G080600' => 'gra', 'Gorai.007G080700' => 'gra', 'Gorai.009G105700' => 'gra', 'Gorai.009G123000' => 'gra', 'Gorai.012G051300' => 'gra', 'GSVIVG01011475001' => 'vvi', 'GSVIVG01011476001' => 'vvi', 'GSVIVG01015979001' => 'vvi', 'HanXRQChr02g0033981' => 'han', 'HanXRQChr09g0264051' => 'han', 'HanXRQChr09g0264061' => 'han', 'HanXRQChr09g0264071' => 'han', 'HanXRQChr15g0487941' => 'han', 'HanXRQChr15g0487951' => 'han', 'HanXRQChr15g0488411' => 'han', 'Haze_14483' => 'cav', 'Haze_16674' => 'cav', 'Haze_23675' => 'cav', 'Hma1.2p1_0109F.1_g052640' => 'hma', 'Hma1.2p1_0329F.1_g127140' => 'hma', 'Hma1.2p1_2018F.1_g311220' => 'hma', 'Hma1.2p1_2073F.1_g313170' => 'hma', 'HPP92_004699' => 'vpl', 'HPP92_012505' => 'vpl', 'HPP92_027475' => 'vpl', 'Hund00493' => 'sun', 'Hund13178' => 'sun', 'Hund15566' => 'sun', 'Lalb_Chr02g0159091' => 'lal', 'Lalb_Chr02g0159101' => 'lal', 'Lalb_Chr10g0105951' => 'lal', 'Lalb_Chr10g0105961' => 'lal', 'Lalb_Chr17g0347581' => 'lal', 'Lalb_Chr21g0318491' => 'lal', 'Lalb_Chr21g0318501' => 'lal', 'Lalb_Chr21g0318511' => 'lal', 'Lalb_Chr22g0350391' => 'lal', 'Lalb_Chr24g0392821' => 'lal', 'Lj2g0001219' => 'lja', 'Lj2g0024407' => 'lja', 'Lj3g0002956' => 'lja', 'Lj4A114G80' => 'lonja', 'Lj4A114T80' => 'lonja', 'Lj6g0020692' => 'lja', 'Lj9A492T53' => 'lonja', 'LjContig00564g0010296' => 'lja', 'Lsat_1_v5_gn_2_88200' => 'lsa', 'Lsat_1_v5_gn_4_170021' => 'lsa', 'Lsat_1_v5_gn_4_170041' => 'lsa', 'Lsat_1_v5_gn_4_170061' => 'lsa', 'Manes.01G100000' => 'mes', 'Manes.02G050000' => 'mes', 'Manes.02G050100' => 'mes', 'Manes.11G067200' => 'mes', 'Manes.11G114200' => 'mes', 'MBI14_g34253_MAGBIO' => 'mbi', 'MBI15_g18245_MAGBIO' => 'mbi', 'MBI15_g43155_MAGBIO' => 'mbi', 'MD09G1057500' => 'mdo', 'MD09G1057600' => 'mdo', 'MD09G1225200' => 'mdo', 'MD11G1182000' => 'mdo', 'MD15G1314400' => 'mdo', 'MD17G1054300' => 'mdo', 'MD17G1054500' => 'mdo', 'MD17G1223900' => 'mdo', 'Medtr3g117110' => 'mtr', 'Medtr4g007250' => 'mtr', 'Medtr5g087970' => 'mtr', 'Medtr5g088000' => 'mtr', 'Medtr5g088170' => 'mtr', 'Medtr5g088180' => 'mtr', 'Medtr6g013170' => 'mtr', 'Medtr6g013200' => 'mtr', 'Medtr6g013420' => 'mtr', 'MELO3C009833.2' => 'cme', 'MELO3C026734.2' => 'cme', 'MELO3C029408.2' => 'cme', 'MELO3C030977.2' => 'cme', 'Migut.D01128' => 'egut', 'Migut.H00668' => 'egut', 'Migut.H00669' => 'egut', 'MSTRG.23910' => 'ama', 'MSTRG.3026' => 'ama', 'MSTRG.3342' => 'ama', 'MSTRG.4675' => 'ama', 'Nitab4.5_0000568g0290' => 'nta', 'Nitab4.5_0001271g0030' => 'nta', 'Nitab4.5_0001340g0050' => 'nta', 'Nitab4.5_0001591g0040' => 'nta', 'Nn1g04679' => 'nnu', 'Nn2g12397' => 'nnu', 'Nn3g17358' => 'nnu', 'Nn3g17359' => 'nnu', 'Nn3g18234' => 'nnu', 'Nn4g23310' => 'nnu', 'Nn4g23311' => 'nnu', 'Nn4g24563' => 'nnu', 'Nn4g24610' => 'nnu', 'Nn4g26103' => 'nnu', 'Nn6g34237' => 'nnu', 'Nn6g34257' => 'nnu', 'Nn7g36585' => 'nnu', 'Nn8g39909' => 'nnu', 'Oeu000846.1' => 'oeu', 'Oeu000847.1' => 'oeu', 'Oeu020662.1' => 'oeu', 'Oeu023717.1' => 'oeu', 'Oeu028002.1' => 'oeu', 'Oeu035930.1' => 'oeu', 'Oeu051572.1' => 'oeu', 'Os03g0758500' => 'osa', 'Os07g0112700' => 'osa', 'Os09g0557900' => 'osa', 'Peaxi162Scf00166g00921' => 'pax', 'Peaxi162Scf00166g00932' => 'pax', 'Peaxi162Scf00360g00410' => 'pax', 'Peaxi162Scf00553g00527' => 'pax', 'Peaxi162Scf00823g00021' => 'pax', 'Peaxi162Scf01411g00005' => 'pax', 'PGR004G0509' => 'pgr', 'PGR031G0492' => 'pgr', 'PGR056G0002' => 'pgr', 'PGR083G1972' => 'pgr', 'PGR102G2032' => 'pgr', 'PGSC0003DMG400001436' => 'stu', 'PGSC0003DMG400001437' => 'stu', 'PGSC0003DMG400028648' => 'stu', 'Phvul.004G032500' => 'pvu', 'Phvul.004G032800' => 'pvu', 'Phvul.010G162400' => 'pvu', 'Phvul.L003937' => 'pvu', 'Potri.001G043600' => 'ptr', 'Potri.001G219800' => 'ptr', 'Potri.001G219900' => 'ptr', 'Potri.003G183300' => 'ptr', 'Potri.004G121100' => 'ptr', 'Potri.017G088500' => 'ptr', 'Potri.017G088600' => 'ptr', 'Prupe.3G099600' => 'ppe', 'Prupe.3G261600' => 'ppe', 'Prupe.3G261800' => 'ppe', 'Prupe.6G154600' => 'ppe', 'Prupe.6G154700' => 'ppe', 'Psat1g070000' => 'psa', 'Psat1g071320' => 'psa', 'Psat2g021840' => 'psa', 'Psat5g005680' => 'psa', 'Psat7g263160' => 'psa', 'PSO063G0457' => 'pso', 'PSO063G2127' => 'pso', 'PSO063G3556' => 'pso', 'PSO063G4416' => 'pso', 'PSO063G7079' => 'pso', 'PSO339G1054' => 'pso', 'PSO541G2463' => 'pso', 'PSO675G8994' => 'pso', 'PSO782G1371' => 'pso', 'PSO782G1660' => 'pso', 'QL01p020179' => 'qlo', 'QL02p039253' => 'qlo', 'QL03p071147' => 'qlo', 'QL05p035664' => 'qlo', 'RcHm_v2.0_Chr2g0132811' => 'rch', 'RcHm_v2.0_Chr2g0166941' => 'rch', 'RcHm_v2.0_Chr2g0166951' => 'rch', 'RcHm_v2.0_Chr5g0049891' => 'rch', 'Rhsim03G0036900' => 'rsi', 'Rhsim03G0037100' => 'rsi', 'Rhsim03G0037600' => 'rsi', 'Rhsim03G0037700' => 'rsi', 'Rhsim03G0037800' => 'rsi', 'Rhsim03G0037900' => 'rsi', 'Rhsim10G0034800' => 'rsi', 'Rhsim10G0035000' => 'rsi', 'Rhsim12G0187100' => 'rsi', 'Sabra03G0133900' => 'sbr', 'Sabra16G0124400' => 'sbr', 'Sabra16G0124500' => 'sbr', 'Sabra17G0078300' => 'sbr', 'Sabra17G0078400' => 'sbr', 'SalBow1G1337' => 'sbo', 'SalBow1G5006' => 'sbo', 'SalBow1G6468' => 'sbo', 'SalBow1G7371' => 'sbo', 'SalBow1G8395' => 'sbo', 'SalBow6G4665' => 'sbo', 'Sc06g0010770' => 'sci', 'Sc10g0003340' => 'sci', 'Sc12g0008620' => 'sci', 'Sed0003380' => 'sed', 'Sed0006420' => 'sed', 'Sed0008099' => 'sed', 'Sed0012581' => 'sed', 'Sed0015366' => 'sed', 'SEGI_36586' => 'sgi', 'SGA_v2.0_scaffold413G51168' => 'sas', 'SGA_v2.0_scaffold4G02424' => 'sas', 'SHI05053' => 'shi', 'SHI25348' => 'shi', 'SMO171G0082' => 'smo', 'SMO347G0549' => 'smo', 'Solyc02g088380.4' => 'sly', 'Solyc02g088390.4' => 'sly', 'Solyc03g117560.3' => 'sly', 'Solyc12g042580.2' => 'sly', 'Sopen02g033060' => 'spe', 'Sopen02g033070' => 'spe', 'Sopen03g036470' => 'spe', 'Sopen12g021720' => 'spe', 'Sp3g01060' => 'spa', 'Sp4g08250' => 'spa', 'Sp6g28710' => 'spa', 'TAR374G0681' => 'tar', 'TAR622G0505' => 'tar', 'TAR625G0184' => 'tar', 'TAR629G2646' => 'tar', 'THA.LOC104800486' => 'tha', 'THA.LOC104812414' => 'tha', 'THA.LOC104821013' => 'tha', 'THA.LOC104822347' => 'tha', 'Thecc.04G088800' => 'tca', 'Thecc.04G088900' => 'tca', 'Thecc.06G042600' => 'tca', 'Thecc.06G042800' => 'tca', 'Thecc.09G338700' => 'tca', 'Thhalv10002108m.g' => 'esa', 'Thhalv10014831m.g' => 'esa', 'Thhalv10021623m.g' => 'esa', 'TPR.G11307' => 'tpr', 'TPR.G11331' => 'tpr', 'TPR.G16558' => 'tpr', 'TPR.G26217' => 'tpr', 'TPR.G3322' => 'tpr', 'TPR.G36016' => 'tpr', 'TWI18G1326' => 'twi', 'TWI32G0744' => 'twi', 'TWI34G0910' => 'twi', 'TWI34G1935' => 'twi', 'TWI75G1478' => 'twi', 'TWI79G1155' => 'twi', 'TWI79G1404' => 'twi', 'unitig_0.g355' => 'ugi', 'unitig_62.g23439' => 'ugi', 'vmacro05675' => 'vma', 'vmacro05676' => 'vma', 'vmacro16850' => 'vma', 'VMungo0331G0077' => 'vmu', 'VMungo0464G1350' => 'vmu', 'VMungo0464G2065' => 'vmu', 'Zm00001eb057870' => 'zma', 'Zm00001eb152260' => 'zma', 'Zm00001eb298480' => 'zma', 'Zm00001eb320500' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001441', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001441' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001441', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '436', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001441' ) ), 'genes' => array( 'A02p28040' => 'bna', 'A03p07120' => 'bna', 'A03p26780' => 'bna', 'A05p44880' => 'bna', 'A10p23510' => 'bna', 'Aa31LG11G14180' => 'aar', 'Aa31LG5G12550' => 'aar', 'Aa31LG5G8430' => 'aar', 'Aa31LG7G570' => 'aar', 'Actinidia01958' => 'ach', 'Actinidia01959' => 'ach', 'Actinidia06111' => 'ach', 'Actinidia06112' => 'ach', 'Ah.03g140020' => 'amhyb', 'Ah.06g193980' => 'amhyb', 'Ah.10g031860' => 'amhyb', 'Ah.12g062500' => 'amhyb', 'AL3G11190' => 'aly', 'AL4G20570' => 'aly', 'AL6G26230' => 'aly', 'AL9U11630' => 'aly', 'Aqoxy3G00468' => 'aox', 'Aqoxy3G00469' => 'aox', 'Aqoxy3G03524' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7Y0VRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P32VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLF82K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECN0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6LI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYRN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1LFEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJF7LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB99CZ' => 'arhy', 'AT2G27035' => 'ath', 'AT3G01070' => 'ath', 'AT4G12880' => 'ath', 'AT5G15350' => 'ath', 'ATR0580G049' => 'atr', 'ATR0730G065' => 'atr', 'ATR0730G141' => 'atr', 'Atru.chr1.1413' => 'acertr', 'Atru.chr1.2794' => 'acertr', 'Atru.chr8.355' => 'acertr', 'AUR62011464' => 'cqu', 'AUR62016591' => 'cqu', 'AUR62018126' => 'cqu', 'AUR62034459' => 'cqu', 'BcaB01g03039' => 'bca', 'BcaB01g05058' => 'bca', 'BcaB01g05062' => 'bca', 'BcaB07g30555' => 'bca', 'BcaC01g04921' => 'bca', 'BcaC03g13552' => 'bca', 'BcaC03g16605' => 'bca', 'BcaC04g24241' => 'bca', 'BcaC05g30320' => 'bca', 'BcaC05g30377' => 'bca', 'BcaC09g47680' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00060' => 'bna', 'BolC1t05924H' => 'bol', 'BolC2t10471H' => 'bol', 'BolC3t13308H' => 'bol', 'BolC3t15552H' => 'bol', 'BraA01t04635Z' => 'bra', 'BraA02t07842Z' => 'bra', 'BraA03t10034Z' => 'bra', 'BraA03t11889Z' => 'bra', 'BraA05t23169Z' => 'bra', 'C02p44340' => 'bna', 'C03p08110' => 'bna', 'C03p32090' => 'bna', 'C09p61740' => 'bna', 'C09p75460' => 'bna', 'CAN.G206.186' => 'can', 'CAN.G206.187' => 'can', 'CAN.G206.188' => 'can', 'CAN.G407.5' => 'can', 'CAN.G471.2' => 'can', 'CAN.G521.9' => 'can', 'CANSAT54G1924' => 'cansat', 'CANSAT54G2915' => 'cansat', 'CANSAT56G0770' => 'cansat', 'CANSAT64G1363' => 'cansat', 'CANSAT64G1417' => 'cansat', 'CARHR076000' => 'chi', 'CARHR119330' => 'chi', 'CARHR197940' => 'chi', 'Carub.0001s4155' => 'cru', 'Carub.0003s0110' => 'cru', 'Carub.0004s0752' => 'cru', 'Carub.0006s1354' => 'cru', 'Carub.0007s2990' => 'cru', 'Ca_04861_v3' => 'car', 'Ca_06161_v3' => 'car', 'Cc07_g03740' => 'ccan', 'Cc07_g03750' => 'ccan', 'CDE02G1753' => 'cde', 'CDE05G1009' => 'cde', 'CDE11G1175' => 'cde', 'Cfa001874' => 'cfa', 'Cfa007605' => 'cfa', 'Cfa010265' => 'cfa', 'Ciclev10012903m.g' => 'ccl', 'Ciclev10012929m.g' => 'ccl', 'Ciclev10016919m.g' => 'ccl', 'Ciclev10026582m.g' => 'ccl', 'CiPaw.01G255300' => 'cil', 'CiPaw.03G021000' => 'cil', 'CiPaw.04G013900' => 'cil', 'CiPaw.04G014000' => 'cil', 'CiPaw.14G090700' => 'cil', 'ClCG03G014080' => 'cla', 'ClCG10G012890' => 'cla', 'ClCG10G015480' => 'cla', 'ClCG10G015490' => 'cla', 'COL.COLO4_12244' => 'col', 'COL.COLO4_12245' => 'col', 'COL.COLO4_18351' => 'col', 'COL.COLO4_18354' => 'col', 'COL.COLO4_26736' => 'col', 'Cpa.g.sc10.61' => 'cpa', 'CsaV3_1G042160' => 'csa', 'CsaV3_3G032750' => 'csa', 'CsaV3_3G040980' => 'csa', 'CsaV3_3G040990' => 'csa', 'CSS0032145' => 'camsi', 'CSS0032460' => 'camsi', 'CSS0049769' => 'camsi', 'DCAR_011069' => 'dca', 'DCAR_021664' => 'dca', 'DCAR_025560' => 'dca', 'Dinv21415' => 'din', 'Dinv24002' => 'din', 'Dinv33797' => 'din', 'Duzib147G0324' => 'dzi', 'Duzib147G1600' => 'dzi', 'Duzib150G0154' => 'dzi', 'Duzib168G1282' => 'dzi', 'Duzib187G0668' => 'dzi', 'Duzib235G1424' => 'dzi', 'ECA232G0881' => 'eca', 'ECA232G3133' => 'eca', 'EL10Ac2g03037' => 'bvu', 'EL10Ac4g08364' => 'bvu', 'EL10Ac4g10220' => 'bvu', 'EL10Ac4g10225' => 'bvu', 'EL10Ac6g15208' => 'bvu', 'EL10Ac9g21858' => 'bvu', 'Eucgr.E01880' => 'egr', 'Eucgr.F03968' => 'egr', 'Eucgr.I01995' => 'egr', 'Eucgr.I01996' => 'egr', 'FAN02G1582' => 'fan', 'FAN02G2392' => 'fan', 'FAN02G2724' => 'fan', 'FAN05G3980' => 'fan', 'FAN05G4760' => 'fan', 'FAN09G0100' => 'fan', 'FAN09G0525' => 'fan', 'FAN09G0865' => 'fan', 'FAN09G1704' => 'fan', 'FAN14G4880' => 'fan', 'FvH4_6g27830' => 'fve', 'FvH4_6g28520' => 'fve', 'FvH4_6g47771' => 'fve', 'FvH4_6g47772' => 'fve', 'Glyma.02G275100' => 'gma', 'Glyma.02G275200' => 'gma', 'Glyma.07G022000' => 'gma', 'Glyma.13G059500' => 'gma', 'Glyma.13G059700' => 'gma', 'Glyma.19G026900' => 'gma', 'Glyma.20G053100' => 'gma', 'Gohir.A05G118500' => 'ghi', 'Gohir.A05G369300' => 'ghi', 'Gohir.A11G071100' => 'ghi', 'Gohir.D04G046100' => 'ghi', 'Gohir.D05G101550' => 'ghi', 'Gohir.D05G119400' => 'ghi', 'Gohir.D11G075000' => 'ghi', 'Gohir.D11G075100' => 'ghi', 'Gorai.007G080600' => 'gra', 'Gorai.007G080700' => 'gra', 'Gorai.009G105700' => 'gra', 'Gorai.009G123000' => 'gra', 'Gorai.012G051300' => 'gra', 'GSVIVG01011475001' => 'vvi', 'GSVIVG01011476001' => 'vvi', 'GSVIVG01015979001' => 'vvi', 'HanXRQChr02g0033981' => 'han', 'HanXRQChr09g0264051' => 'han', 'HanXRQChr09g0264061' => 'han', 'HanXRQChr09g0264071' => 'han', 'HanXRQChr15g0487941' => 'han', 'HanXRQChr15g0487951' => 'han', 'HanXRQChr15g0488411' => 'han', 'Haze_14483' => 'cav', 'Haze_16674' => 'cav', 'Haze_23675' => 'cav', 'Hma1.2p1_0109F.1_g052640' => 'hma', 'Hma1.2p1_0329F.1_g127140' => 'hma', 'Hma1.2p1_2018F.1_g311220' => 'hma', 'Hma1.2p1_2073F.1_g313170' => 'hma', 'HPP92_004699' => 'vpl', 'HPP92_012505' => 'vpl', 'HPP92_027475' => 'vpl', 'Hund00493' => 'sun', 'Hund13178' => 'sun', 'Hund15566' => 'sun', 'Lalb_Chr02g0159091' => 'lal', 'Lalb_Chr02g0159101' => 'lal', 'Lalb_Chr10g0105951' => 'lal', 'Lalb_Chr10g0105961' => 'lal', 'Lalb_Chr17g0347581' => 'lal', 'Lalb_Chr21g0318491' => 'lal', 'Lalb_Chr21g0318501' => 'lal', 'Lalb_Chr21g0318511' => 'lal', 'Lalb_Chr22g0350391' => 'lal', 'Lalb_Chr24g0392821' => 'lal', 'Lj2g0001219' => 'lja', 'Lj2g0024407' => 'lja', 'Lj3g0002956' => 'lja', 'Lj4A114G80' => 'lonja', 'Lj4A114T80' => 'lonja', 'Lj6g0020692' => 'lja', 'Lj9A492T53' => 'lonja', 'LjContig00564g0010296' => 'lja', 'Lsat_1_v5_gn_2_88200' => 'lsa', 'Lsat_1_v5_gn_4_170021' => 'lsa', 'Lsat_1_v5_gn_4_170041' => 'lsa', 'Lsat_1_v5_gn_4_170061' => 'lsa', 'Manes.01G100000' => 'mes', 'Manes.02G050000' => 'mes', 'Manes.02G050100' => 'mes', 'Manes.11G067200' => 'mes', 'Manes.11G114200' => 'mes', 'MBI14_g34253_MAGBIO' => 'mbi', 'MBI15_g18245_MAGBIO' => 'mbi', 'MBI15_g43155_MAGBIO' => 'mbi', 'MD09G1057500' => 'mdo', 'MD09G1057600' => 'mdo', 'MD09G1225200' => 'mdo', 'MD11G1182000' => 'mdo', 'MD15G1314400' => 'mdo', 'MD17G1054300' => 'mdo', 'MD17G1054500' => 'mdo', 'MD17G1223900' => 'mdo', 'Medtr3g117110' => 'mtr', 'Medtr4g007250' => 'mtr', 'Medtr5g087970' => 'mtr', 'Medtr5g088000' => 'mtr', 'Medtr5g088170' => 'mtr', 'Medtr5g088180' => 'mtr', 'Medtr6g013170' => 'mtr', 'Medtr6g013200' => 'mtr', 'Medtr6g013420' => 'mtr', 'MELO3C009833.2' => 'cme', 'MELO3C026734.2' => 'cme', 'MELO3C029408.2' => 'cme', 'MELO3C030977.2' => 'cme', 'Migut.D01128' => 'egut', 'Migut.H00668' => 'egut', 'Migut.H00669' => 'egut', 'MSTRG.23910' => 'ama', 'MSTRG.3026' => 'ama', 'MSTRG.3342' => 'ama', 'MSTRG.4675' => 'ama', 'Nitab4.5_0000568g0290' => 'nta', 'Nitab4.5_0001271g0030' => 'nta', 'Nitab4.5_0001340g0050' => 'nta', 'Nitab4.5_0001591g0040' => 'nta', 'Nn1g04679' => 'nnu', 'Nn2g12397' => 'nnu', 'Nn3g17358' => 'nnu', 'Nn3g17359' => 'nnu', 'Nn3g18234' => 'nnu', 'Nn4g23310' => 'nnu', 'Nn4g23311' => 'nnu', 'Nn4g24563' => 'nnu', 'Nn4g24610' => 'nnu', 'Nn4g26103' => 'nnu', 'Nn6g34237' => 'nnu', 'Nn6g34257' => 'nnu', 'Nn7g36585' => 'nnu', 'Nn8g39909' => 'nnu', 'Oeu000846.1' => 'oeu', 'Oeu000847.1' => 'oeu', 'Oeu020662.1' => 'oeu', 'Oeu023717.1' => 'oeu', 'Oeu028002.1' => 'oeu', 'Oeu035930.1' => 'oeu', 'Oeu051572.1' => 'oeu', 'Os03g0758500' => 'osa', 'Os07g0112700' => 'osa', 'Os09g0557900' => 'osa', 'Peaxi162Scf00166g00921' => 'pax', 'Peaxi162Scf00166g00932' => 'pax', 'Peaxi162Scf00360g00410' => 'pax', 'Peaxi162Scf00553g00527' => 'pax', 'Peaxi162Scf00823g00021' => 'pax', 'Peaxi162Scf01411g00005' => 'pax', 'PGR004G0509' => 'pgr', 'PGR031G0492' => 'pgr', 'PGR056G0002' => 'pgr', 'PGR083G1972' => 'pgr', 'PGR102G2032' => 'pgr', 'PGSC0003DMG400001436' => 'stu', 'PGSC0003DMG400001437' => 'stu', 'PGSC0003DMG400028648' => 'stu', 'Phvul.004G032500' => 'pvu', 'Phvul.004G032800' => 'pvu', 'Phvul.010G162400' => 'pvu', 'Phvul.L003937' => 'pvu', 'Potri.001G043600' => 'ptr', 'Potri.001G219800' => 'ptr', 'Potri.001G219900' => 'ptr', 'Potri.003G183300' => 'ptr', 'Potri.004G121100' => 'ptr', 'Potri.017G088500' => 'ptr', 'Potri.017G088600' => 'ptr', 'Prupe.3G099600' => 'ppe', 'Prupe.3G261600' => 'ppe', 'Prupe.3G261800' => 'ppe', 'Prupe.6G154600' => 'ppe', 'Prupe.6G154700' => 'ppe', 'Psat1g070000' => 'psa', 'Psat1g071320' => 'psa', 'Psat2g021840' => 'psa', 'Psat5g005680' => 'psa', 'Psat7g263160' => 'psa', 'PSO063G0457' => 'pso', 'PSO063G2127' => 'pso', 'PSO063G3556' => 'pso', 'PSO063G4416' => 'pso', 'PSO063G7079' => 'pso', 'PSO339G1054' => 'pso', 'PSO541G2463' => 'pso', 'PSO675G8994' => 'pso', 'PSO782G1371' => 'pso', 'PSO782G1660' => 'pso', 'QL01p020179' => 'qlo', 'QL02p039253' => 'qlo', 'QL03p071147' => 'qlo', 'QL05p035664' => 'qlo', 'RcHm_v2.0_Chr2g0132811' => 'rch', 'RcHm_v2.0_Chr2g0166941' => 'rch', 'RcHm_v2.0_Chr2g0166951' => 'rch', 'RcHm_v2.0_Chr5g0049891' => 'rch', 'Rhsim03G0036900' => 'rsi', 'Rhsim03G0037100' => 'rsi', 'Rhsim03G0037600' => 'rsi', 'Rhsim03G0037700' => 'rsi', 'Rhsim03G0037800' => 'rsi', 'Rhsim03G0037900' => 'rsi', 'Rhsim10G0034800' => 'rsi', 'Rhsim10G0035000' => 'rsi', 'Rhsim12G0187100' => 'rsi', 'Sabra03G0133900' => 'sbr', 'Sabra16G0124400' => 'sbr', 'Sabra16G0124500' => 'sbr', 'Sabra17G0078300' => 'sbr', 'Sabra17G0078400' => 'sbr', 'SalBow1G1337' => 'sbo', 'SalBow1G5006' => 'sbo', 'SalBow1G6468' => 'sbo', 'SalBow1G7371' => 'sbo', 'SalBow1G8395' => 'sbo', 'SalBow6G4665' => 'sbo', 'Sc06g0010770' => 'sci', 'Sc10g0003340' => 'sci', 'Sc12g0008620' => 'sci', 'Sed0003380' => 'sed', 'Sed0006420' => 'sed', 'Sed0008099' => 'sed', 'Sed0012581' => 'sed', 'Sed0015366' => 'sed', 'SEGI_36586' => 'sgi', 'SGA_v2.0_scaffold413G51168' => 'sas', 'SGA_v2.0_scaffold4G02424' => 'sas', 'SHI05053' => 'shi', 'SHI25348' => 'shi', 'SMO171G0082' => 'smo', 'SMO347G0549' => 'smo', 'Solyc02g088380.4' => 'sly', 'Solyc02g088390.4' => 'sly', 'Solyc03g117560.3' => 'sly', 'Solyc12g042580.2' => 'sly', 'Sopen02g033060' => 'spe', 'Sopen02g033070' => 'spe', 'Sopen03g036470' => 'spe', 'Sopen12g021720' => 'spe', 'Sp3g01060' => 'spa', 'Sp4g08250' => 'spa', 'Sp6g28710' => 'spa', 'TAR374G0681' => 'tar', 'TAR622G0505' => 'tar', 'TAR625G0184' => 'tar', 'TAR629G2646' => 'tar', 'THA.LOC104800486' => 'tha', 'THA.LOC104812414' => 'tha', 'THA.LOC104821013' => 'tha', 'THA.LOC104822347' => 'tha', 'Thecc.04G088800' => 'tca', 'Thecc.04G088900' => 'tca', 'Thecc.06G042600' => 'tca', 'Thecc.06G042800' => 'tca', 'Thecc.09G338700' => 'tca', 'Thhalv10002108m.g' => 'esa', 'Thhalv10014831m.g' => 'esa', 'Thhalv10021623m.g' => 'esa', 'TPR.G11307' => 'tpr', 'TPR.G11331' => 'tpr', 'TPR.G16558' => 'tpr', 'TPR.G26217' => 'tpr', 'TPR.G3322' => 'tpr', 'TPR.G36016' => 'tpr', 'TWI18G1326' => 'twi', 'TWI32G0744' => 'twi', 'TWI34G0910' => 'twi', 'TWI34G1935' => 'twi', 'TWI75G1478' => 'twi', 'TWI79G1155' => 'twi', 'TWI79G1404' => 'twi', 'unitig_0.g355' => 'ugi', 'unitig_62.g23439' => 'ugi', 'vmacro05675' => 'vma', 'vmacro05676' => 'vma', 'vmacro16850' => 'vma', 'VMungo0331G0077' => 'vmu', 'VMungo0464G1350' => 'vmu', 'VMungo0464G2065' => 'vmu', 'Zm00001eb057870' => 'zma', 'Zm00001eb152260' => 'zma', 'Zm00001eb298480' => 'zma', 'Zm00001eb320500' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001441' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001441' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001441' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001441' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151