Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p28040 Brassica napus
A03p07120 Brassica napus
A03p26780 Brassica napus
A05p44880 Brassica napus
A10p23510 Brassica napus
Aa31LG11G14180 Aethionema arabicum
Aa31LG5G12550 Aethionema arabicum
Aa31LG5G8430 Aethionema arabicum
Aa31LG7G570 Aethionema arabicum
Actinidia01958 Actinidia chinensis
Actinidia01959 Actinidia chinensis
Actinidia06111 Actinidia chinensis
Actinidia06112 Actinidia chinensis
Ah.03g140020 Amaranthus hybridus
Ah.06g193980 Amaranthus hybridus
Ah.10g031860 Amaranthus hybridus
Ah.12g062500 Amaranthus hybridus
AL3G11190 Arabidopsis lyrata
AL4G20570 Arabidopsis lyrata
AL6G26230 Arabidopsis lyrata
AL9U11630 Arabidopsis lyrata
Aqoxy3G00468 Aquilegia oxysepala
Aqoxy3G00469 Aquilegia oxysepala
Aqoxy3G03524 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7Y0VRH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8P32VS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BLF82K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ECN0HX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I6LI5E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LYRN80 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V1LFEB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VJF7LG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZB99CZ Arachis hypogaea
AT2G27035 Arabidopsis thaliana
AT3G01070 Arabidopsis thaliana
AT4G12880 Arabidopsis thaliana
AT5G15350 Arabidopsis thaliana
ATR0580G049 Amborella trichopoda
ATR0730G065 Amborella trichopoda
ATR0730G141 Amborella trichopoda
Atru.chr1.1413 Acer truncatum
Atru.chr1.2794 Acer truncatum
Atru.chr8.355 Acer truncatum
AUR62011464 Chenopodium quinoa
AUR62016591 Chenopodium quinoa
AUR62018126 Chenopodium quinoa
AUR62034459 Chenopodium quinoa
BcaB01g03039 Brassica carinata
BcaB01g05058 Brassica carinata
BcaB01g05062 Brassica carinata
BcaB07g30555 Brassica carinata
BcaC01g04921 Brassica carinata
BcaC03g13552 Brassica carinata
BcaC03g16605 Brassica carinata
BcaC04g24241 Brassica carinata
BcaC05g30320 Brassica carinata
BcaC05g30377 Brassica carinata
BcaC09g47680 Brassica carinata
BNapus_Darmor_BZH_scaffold_113p00100 Brassica napus
BNapus_Darmor_BZH_scaffold_97p00060 Brassica napus
BolC1t05924H Brassica oleracea
BolC2t10471H Brassica oleracea
BolC3t13308H Brassica oleracea
BolC3t15552H Brassica oleracea
BraA01t04635Z Brassica rapa
BraA02t07842Z Brassica rapa
BraA03t10034Z Brassica rapa
BraA03t11889Z Brassica rapa
BraA05t23169Z Brassica rapa
C02p44340 Brassica napus
C03p08110 Brassica napus
C03p32090 Brassica napus
C09p61740 Brassica napus
C09p75460 Brassica napus
CAN.G206.186 Capsicum annuum
CAN.G206.187 Capsicum annuum
CAN.G206.188 Capsicum annuum
CAN.G407.5 Capsicum annuum
CAN.G471.2 Capsicum annuum
CAN.G521.9 Capsicum annuum
CANSAT54G1924 Cannabis sativa
CANSAT54G2915 Cannabis sativa
CANSAT56G0770 Cannabis sativa
CANSAT64G1363 Cannabis sativa
CANSAT64G1417 Cannabis sativa
CARHR076000 Cardamine hirsuta
CARHR119330 Cardamine hirsuta
CARHR197940 Cardamine hirsuta
Carub.0001s4155 Capsella rubella
Carub.0003s0110 Capsella rubella
Carub.0004s0752 Capsella rubella
Carub.0006s1354 Capsella rubella
Carub.0007s2990 Capsella rubella
Ca_04861_v3 Cicer arietinum L.
Ca_06161_v3 Cicer arietinum L.
Cc07_g03740 Coffea canephora
Cc07_g03750 Coffea canephora
CDE02G1753 Ceratophyllum demersum
CDE05G1009 Ceratophyllum demersum
CDE11G1175 Ceratophyllum demersum
Cfa001874 Carpinus fangiana
Cfa007605 Carpinus fangiana
Cfa010265 Carpinus fangiana
Ciclev10012903m.g Citrus clementina
Ciclev10012929m.g Citrus clementina
Ciclev10016919m.g Citrus clementina
Ciclev10026582m.g Citrus clementina
CiPaw.01G255300 Carya illinoinensis
CiPaw.03G021000 Carya illinoinensis
CiPaw.04G013900 Carya illinoinensis
CiPaw.04G014000 Carya illinoinensis
CiPaw.14G090700 Carya illinoinensis
ClCG03G014080 Citrullus lanatus
ClCG10G012890 Citrullus lanatus
ClCG10G015480 Citrullus lanatus
ClCG10G015490 Citrullus lanatus
COL.COLO4_12244 Corchorus olitorius
COL.COLO4_12245 Corchorus olitorius
COL.COLO4_18351 Corchorus olitorius
COL.COLO4_18354 Corchorus olitorius
COL.COLO4_26736 Corchorus olitorius
Cpa.g.sc10.61 Carica papaya
CsaV3_1G042160 Cucumis sativus L.
CsaV3_3G032750 Cucumis sativus L.
CsaV3_3G040980 Cucumis sativus L.
CsaV3_3G040990 Cucumis sativus L.
CSS0032145 Camellia sinensis var. sinensis
CSS0032460 Camellia sinensis var. sinensis
CSS0049769 Camellia sinensis var. sinensis
DCAR_011069 Daucus carota
DCAR_021664 Daucus carota
DCAR_025560 Daucus carota
Dinv21415 Davidia involucrata
Dinv24002 Davidia involucrata
Dinv33797 Davidia involucrata
Duzib147G0324 Durio zibethinus
Duzib147G1600 Durio zibethinus
Duzib150G0154 Durio zibethinus
Duzib168G1282 Durio zibethinus
Duzib187G0668 Durio zibethinus
Duzib235G1424 Durio zibethinus
ECA232G0881 Erigeron canadensis
ECA232G3133 Erigeron canadensis
EL10Ac2g03037 Beta vulgaris
EL10Ac4g08364 Beta vulgaris
EL10Ac4g10220 Beta vulgaris
EL10Ac4g10225 Beta vulgaris
EL10Ac6g15208 Beta vulgaris
EL10Ac9g21858 Beta vulgaris
Eucgr.E01880 Eucalyptus grandis
Eucgr.F03968 Eucalyptus grandis
Eucgr.I01995 Eucalyptus grandis
Eucgr.I01996 Eucalyptus grandis
FAN02G1582 Fragaria x ananassa
FAN02G2392 Fragaria x ananassa
FAN02G2724 Fragaria x ananassa
FAN05G3980 Fragaria x ananassa
FAN05G4760 Fragaria x ananassa
FAN09G0100 Fragaria x ananassa
FAN09G0525 Fragaria x ananassa
FAN09G0865 Fragaria x ananassa
FAN09G1704 Fragaria x ananassa
FAN14G4880 Fragaria x ananassa
FvH4_6g27830 Fragaria vesca
FvH4_6g28520 Fragaria vesca
FvH4_6g47771 Fragaria vesca
FvH4_6g47772 Fragaria vesca
Glyma.02G275100 Glycine max
Glyma.02G275200 Glycine max
Glyma.07G022000 Glycine max
Glyma.13G059500 Glycine max
Glyma.13G059700 Glycine max
Glyma.19G026900 Glycine max
Glyma.20G053100 Glycine max
Gohir.A05G118500 Gossypium hirsutum
Gohir.A05G369300 Gossypium hirsutum
Gohir.A11G071100 Gossypium hirsutum
Gohir.D04G046100 Gossypium hirsutum
Gohir.D05G101550 Gossypium hirsutum
Gohir.D05G119400 Gossypium hirsutum
Gohir.D11G075000 Gossypium hirsutum
Gohir.D11G075100 Gossypium hirsutum
Gorai.007G080600 Gossypium raimondii
Gorai.007G080700 Gossypium raimondii
Gorai.009G105700 Gossypium raimondii
Gorai.009G123000 Gossypium raimondii
Gorai.012G051300 Gossypium raimondii
GSVIVG01011475001 Vitis vinifera
GSVIVG01011476001 Vitis vinifera
GSVIVG01015979001 Vitis vinifera
HanXRQChr02g0033981 Helianthus annuus
HanXRQChr09g0264051 Helianthus annuus
HanXRQChr09g0264061 Helianthus annuus
HanXRQChr09g0264071 Helianthus annuus
HanXRQChr15g0487941 Helianthus annuus
HanXRQChr15g0487951 Helianthus annuus
HanXRQChr15g0488411 Helianthus annuus
Haze_14483 Corylus avellana
Haze_16674 Corylus avellana
Haze_23675 Corylus avellana
Hma1.2p1_0109F.1_g052640 Hydrangea macrophylla
Hma1.2p1_0329F.1_g127140 Hydrangea macrophylla
Hma1.2p1_2018F.1_g311220 Hydrangea macrophylla
Hma1.2p1_2073F.1_g313170 Hydrangea macrophylla
HPP92_004699 Vanilla planifolia
HPP92_012505 Vanilla planifolia
HPP92_027475 Vanilla planifolia
Hund00493 Selenicereus undatus
Hund13178 Selenicereus undatus
Hund15566 Selenicereus undatus
Lalb_Chr02g0159091 Lupinus albus
Lalb_Chr02g0159101 Lupinus albus
Lalb_Chr10g0105951 Lupinus albus
Lalb_Chr10g0105961 Lupinus albus
Lalb_Chr17g0347581 Lupinus albus
Lalb_Chr21g0318491 Lupinus albus
Lalb_Chr21g0318501 Lupinus albus
Lalb_Chr21g0318511 Lupinus albus
Lalb_Chr22g0350391 Lupinus albus
Lalb_Chr24g0392821 Lupinus albus
Lj2g0001219 Lotus japonicus
Lj2g0024407 Lotus japonicus
Lj3g0002956 Lotus japonicus
Lj4A114G80 Lonicera japonica
Lj4A114T80 Lonicera japonica
Lj6g0020692 Lotus japonicus
Lj9A492T53 Lonicera japonica
LjContig00564g0010296 Lotus japonicus
Lsat_1_v5_gn_2_88200 Lactuca sativa
Lsat_1_v5_gn_4_170021 Lactuca sativa
Lsat_1_v5_gn_4_170041 Lactuca sativa
Lsat_1_v5_gn_4_170061 Lactuca sativa
Manes.01G100000 Manihot esculenta
Manes.02G050000 Manihot esculenta
Manes.02G050100 Manihot esculenta
Manes.11G067200 Manihot esculenta
Manes.11G114200 Manihot esculenta
MBI14_g34253_MAGBIO Magnolia biondii
MBI15_g18245_MAGBIO Magnolia biondii
MBI15_g43155_MAGBIO Magnolia biondii
MD09G1057500 Malus domestica
MD09G1057600 Malus domestica
MD09G1225200 Malus domestica
MD11G1182000 Malus domestica
MD15G1314400 Malus domestica
MD17G1054300 Malus domestica
MD17G1054500 Malus domestica
MD17G1223900 Malus domestica
Medtr3g117110 Medicago truncatula
Medtr4g007250 Medicago truncatula
Medtr5g087970 Medicago truncatula
Medtr5g088000 Medicago truncatula
Medtr5g088170 Medicago truncatula
Medtr5g088180 Medicago truncatula
Medtr6g013170 Medicago truncatula
Medtr6g013200 Medicago truncatula
Medtr6g013420 Medicago truncatula
MELO3C009833.2 Cucumis melo
MELO3C026734.2 Cucumis melo
MELO3C029408.2 Cucumis melo
MELO3C030977.2 Cucumis melo
Migut.D01128 Erythranthe guttata
Migut.H00668 Erythranthe guttata
Migut.H00669 Erythranthe guttata
MSTRG.23910 Avicennia marina
MSTRG.3026 Avicennia marina
MSTRG.3342 Avicennia marina
MSTRG.4675 Avicennia marina
Nitab4.5_0000568g0290 Nicotiana tabacum
Nitab4.5_0001271g0030 Nicotiana tabacum
Nitab4.5_0001340g0050 Nicotiana tabacum
Nitab4.5_0001591g0040 Nicotiana tabacum
Nn1g04679 Nelumbo nucifera
Nn2g12397 Nelumbo nucifera
Nn3g17358 Nelumbo nucifera
Nn3g17359 Nelumbo nucifera
Nn3g18234 Nelumbo nucifera
Nn4g23310 Nelumbo nucifera
Nn4g23311 Nelumbo nucifera
Nn4g24563 Nelumbo nucifera
Nn4g24610 Nelumbo nucifera
Nn4g26103 Nelumbo nucifera
Nn6g34237 Nelumbo nucifera
Nn6g34257 Nelumbo nucifera
Nn7g36585 Nelumbo nucifera
Nn8g39909 Nelumbo nucifera
Oeu000846.1 Olea europaea
Oeu000847.1 Olea europaea
Oeu020662.1 Olea europaea
Oeu023717.1 Olea europaea
Oeu028002.1 Olea europaea
Oeu035930.1 Olea europaea
Oeu051572.1 Olea europaea
Os03g0758500 Oryza sativa ssp. japonica
Os07g0112700 Oryza sativa ssp. japonica
Os09g0557900 Oryza sativa ssp. japonica
Peaxi162Scf00166g00921 Petunia axillaris
Peaxi162Scf00166g00932 Petunia axillaris
Peaxi162Scf00360g00410 Petunia axillaris
Peaxi162Scf00553g00527 Petunia axillaris
Peaxi162Scf00823g00021 Petunia axillaris
Peaxi162Scf01411g00005 Petunia axillaris
PGR004G0509 Punica granatum
PGR031G0492 Punica granatum
PGR056G0002 Punica granatum
PGR083G1972 Punica granatum
PGR102G2032 Punica granatum
PGSC0003DMG400001436 Solanum tuberosum
PGSC0003DMG400001437 Solanum tuberosum
PGSC0003DMG400028648 Solanum tuberosum
Phvul.004G032500 Phaseolus vulgaris
Phvul.004G032800 Phaseolus vulgaris
Phvul.010G162400 Phaseolus vulgaris
Phvul.L003937 Phaseolus vulgaris
Potri.001G043600 Populus trichocarpa
Potri.001G219800 Populus trichocarpa
Potri.001G219900 Populus trichocarpa
Potri.003G183300 Populus trichocarpa
Potri.004G121100 Populus trichocarpa
Potri.017G088500 Populus trichocarpa
Potri.017G088600 Populus trichocarpa
Prupe.3G099600 Prunus persica
Prupe.3G261600 Prunus persica
Prupe.3G261800 Prunus persica
Prupe.6G154600 Prunus persica
Prupe.6G154700 Prunus persica
Psat1g070000 Pisum sativum
Psat1g071320 Pisum sativum
Psat2g021840 Pisum sativum
Psat5g005680 Pisum sativum
Psat7g263160 Pisum sativum
PSO063G0457 Papaver somniferum
PSO063G2127 Papaver somniferum
PSO063G3556 Papaver somniferum
PSO063G4416 Papaver somniferum
PSO063G7079 Papaver somniferum
PSO339G1054 Papaver somniferum
PSO541G2463 Papaver somniferum
PSO675G8994 Papaver somniferum
PSO782G1371 Papaver somniferum
PSO782G1660 Papaver somniferum
QL01p020179 Quercus lobata
QL02p039253 Quercus lobata
QL03p071147 Quercus lobata
QL05p035664 Quercus lobata
RcHm_v2.0_Chr2g0132811 Rosa chinensis
RcHm_v2.0_Chr2g0166941 Rosa chinensis
RcHm_v2.0_Chr2g0166951 Rosa chinensis
RcHm_v2.0_Chr5g0049891 Rosa chinensis
Rhsim03G0036900 Rhododendron simsii
Rhsim03G0037100 Rhododendron simsii
Rhsim03G0037600 Rhododendron simsii
Rhsim03G0037700 Rhododendron simsii
Rhsim03G0037800 Rhododendron simsii
Rhsim03G0037900 Rhododendron simsii
Rhsim10G0034800 Rhododendron simsii
Rhsim10G0035000 Rhododendron simsii
Rhsim12G0187100 Rhododendron simsii
Sabra03G0133900 Salix brachista
Sabra16G0124400 Salix brachista
Sabra16G0124500 Salix brachista
Sabra17G0078300 Salix brachista
Sabra17G0078400 Salix brachista
SalBow1G1337 Salvia bowleyana
SalBow1G5006 Salvia bowleyana
SalBow1G6468 Salvia bowleyana
SalBow1G7371 Salvia bowleyana
SalBow1G8395 Salvia bowleyana
SalBow6G4665 Salvia bowleyana
Sc06g0010770 Simmondsia chinensis
Sc10g0003340 Simmondsia chinensis
Sc12g0008620 Simmondsia chinensis
Sed0003380 Sechium edule
Sed0006420 Sechium edule
Sed0008099 Sechium edule
Sed0012581 Sechium edule
Sed0015366 Sechium edule
SEGI_36586 Sequoiadendron giganteum
SGA_v2.0_scaffold413G51168 Striga asiatica
SGA_v2.0_scaffold4G02424 Striga asiatica
SHI05053 Sapria himalayana
SHI25348 Sapria himalayana
SMO171G0082 Selaginella moellendorffii
SMO347G0549 Selaginella moellendorffii
Solyc02g088380.4 Solanum lycopersicum
Solyc02g088390.4 Solanum lycopersicum
Solyc03g117560.3 Solanum lycopersicum
Solyc12g042580.2 Solanum lycopersicum
Sopen02g033060 Solanum pennellii
Sopen02g033070 Solanum pennellii
Sopen03g036470 Solanum pennellii
Sopen12g021720 Solanum pennellii
Sp3g01060 Schrenkiella parvula
Sp4g08250 Schrenkiella parvula
Sp6g28710 Schrenkiella parvula
TAR374G0681 Trochodendron aralioides
TAR622G0505 Trochodendron aralioides
TAR625G0184 Trochodendron aralioides
TAR629G2646 Trochodendron aralioides
THA.LOC104800486 Tarenaya hassleriana
THA.LOC104812414 Tarenaya hassleriana
THA.LOC104821013 Tarenaya hassleriana
THA.LOC104822347 Tarenaya hassleriana
Thecc.04G088800 Theobroma cacao
Thecc.04G088900 Theobroma cacao
Thecc.06G042600 Theobroma cacao
Thecc.06G042800 Theobroma cacao
Thecc.09G338700 Theobroma cacao
Thhalv10002108m.g Eutrema salsugineum
Thhalv10014831m.g Eutrema salsugineum
Thhalv10021623m.g Eutrema salsugineum
TPR.G11307 Trifolium pratense
TPR.G11331 Trifolium pratense
TPR.G16558 Trifolium pratense
TPR.G26217 Trifolium pratense
TPR.G3322 Trifolium pratense
TPR.G36016 Trifolium pratense
TWI18G1326 Tripterygium wilfordii
TWI32G0744 Tripterygium wilfordii
TWI34G0910 Tripterygium wilfordii
TWI34G1935 Tripterygium wilfordii
TWI75G1478 Tripterygium wilfordii
TWI79G1155 Tripterygium wilfordii
TWI79G1404 Tripterygium wilfordii
unitig_0.g355 Utricularia gibba
unitig_62.g23439 Utricularia gibba
vmacro05675 Vaccinium macrocarpon
vmacro05676 Vaccinium macrocarpon
vmacro16850 Vaccinium macrocarpon
VMungo0331G0077 Vigna mungo
VMungo0464G1350 Vigna mungo
VMungo0464G2065 Vigna mungo
Zm00001eb057870 Zea mays
Zm00001eb152260 Zea mays
Zm00001eb298480 Zea mays
Zm00001eb320500 Zea mays

User provided reference genes

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