Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001435', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12000' => 'bna', 'A05p17510' => 'bna', 'A05p43510' => 'bna', 'A06p00240' => 'bna', 'A08p00700' => 'bna', 'Aa31LG10G1140' => 'aar', 'Aa31LG5G14460' => 'aar', 'Aa31LG9G8560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2730' => 'aag', 'Actinidia06912' => 'ach', 'Actinidia22081' => 'ach', 'Actinidia30299' => 'ach', 'Actinidia30551' => 'ach', 'Ah.08g212240' => 'amhyb', 'Ah.11g044540' => 'amhyb', 'Ah.13g075430' => 'amhyb', 'Ah.15g091840' => 'amhyb', 'AL1G63390' => 'aly', 'AL3G13770' => 'aly', 'AL7G33610' => 'aly', 'Aqoxy199s001' => 'aox', 'Aqoxy199s002' => 'aox', 'Aqoxy1G00474' => 'aox', 'Aqoxy2G00450' => 'aox', 'Aqoxy7G01333' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B43C0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0S58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3WVNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7Z6ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP2KRU' => 'arhy', 'AT1G55340' => 'ath', 'AT3G03880' => 'ath', 'AT4G20300' => 'ath', 'ATR0219G009' => 'atr', 'ATR0737G061' => 'atr', 'ATR0737G062' => 'atr', 'ATR1125G091' => 'atr', 'Atru.chr2.1394' => 'acertr', 'Atru.chr3.2105' => 'acertr', 'Atru.chr7.2022' => 'acertr', 'Atru.chr7.2023' => 'acertr', 'AUR62009202' => 'cqu', 'AUR62032047' => 'cqu', 'AUR62032702' => 'cqu', 'AUR62040199' => 'cqu', 'AUR62040987' => 'cqu', 'AUR62042965' => 'cqu', 'AUR62043050' => 'cqu', 'BcaB02g10825' => 'bca', 'BcaB03g11667' => 'bca', 'BcaB04g16963' => 'bca', 'BcaC01g01516' => 'bca', 'BcaC05g29900' => 'bca', 'BcaC05g30246' => 'bca', 'BcaC05g30289' => 'bca', 'BcaC08g43617' => 'bca', 'BcaC08g44194' => 'bca', 'BcaC09g51323' => 'bca', 'BcaNung03719' => 'bca', 'BolC1t03504H' => 'bol', 'BolC3t20569H' => 'bol', 'BolC3t21578H' => 'bol', 'BolC5t34972H' => 'bol', 'BolC6t36108H' => 'bol', 'BolC6t36792H' => 'bol', 'BraA01t01142Z' => 'bra', 'BraA05t20645Z' => 'bra', 'BraA05t23091Z' => 'bra', 'BraA06t23240Z' => 'bra', 'BraA08t32127Z' => 'bra', 'C01p35460' => 'bna', 'C03p82870' => 'bna', 'C03p92640' => 'bna', 'C06p10320' => 'bna', 'C06p15990' => 'bna', 'CAN.G1327.8' => 'can', 'CAN.G1834.8' => 'can', 'CAN.G1834.9' => 'can', 'CANSAT11G2351' => 'cansat', 'CANSAT25G0463' => 'cansat', 'CANSAT35G0446' => 'cansat', 'CARHR045000' => 'chi', 'CARHR078000' => 'chi', 'CARHR178340' => 'chi', 'CARHR227120' => 'chi', 'Carub.0001s4385' => 'cru', 'Carub.0003s0307' => 'cru', 'Carub.0007s2088' => 'cru', 'Ca_08270_v3' => 'car', 'Ca_13182_v3' => 'car', 'Ca_22536_v3' => 'car', 'Cc01_g00060' => 'ccan', 'Cc06_g23040' => 'ccan', 'Cc08_g10310' => 'ccan', 'Cc09_g04520' => 'ccan', 'CDE02G3633' => 'cde', 'CDE02G3839' => 'cde', 'CDE05G2098' => 'cde', 'CDE09G1322' => 'cde', 'CDE10G0959' => 'cde', 'Cfa009563' => 'cfa', 'Cfa016447' => 'cfa', 'Cfa017930' => 'cfa', 'Ciclev10009045m.g' => 'ccl', 'Ciclev10015606m.g' => 'ccl', 'Ciclev10016677m.g' => 'ccl', 'Ciclev10022079m.g' => 'ccl', 'CiPaw.09G141100' => 'cil', 'CiPaw.10G001200' => 'cil', 'CiPaw.10G108800' => 'cil', 'CiPaw.13G177000' => 'cil', 'CiPaw.14G136800' => 'cil', 'CiPaw.15G042000' => 'cil', 'ClCG03G014530' => 'cla', 'ClCG05G017720' => 'cla', 'ClCG08G016910' => 'cla', 'ClCG10G013410' => 'cla', 'COL.COLO4_05793' => 'col', 'COL.COLO4_21025' => 'col', 'COL.COLO4_25013' => 'col', 'COL.COLO4_36082' => 'col', 'Cpa.g.sc119.41' => 'cpa', 'Cpa.g.sc51.129' => 'cpa', 'Cpa.g.sc7.189' => 'cpa', 'CsaV3_1G041660' => 'csa', 'CsaV3_2G025700' => 'csa', 'CsaV3_3G043230' => 'csa', 'CsaV3_4G035460' => 'csa', 'CSS0004523' => 'camsi', 'CSS0005800' => 'camsi', 'CSS0040277' => 'camsi', 'CSS0047607' => 'camsi', 'DCAR_000780' => 'dca', 'DCAR_001252' => 'dca', 'DCAR_001977' => 'dca', 'DCAR_004366' => 'dca', 'DCAR_013684' => 'dca', 'Dinv13470' => 'din', 'Dinv13471' => 'din', 'Dinv14576' => 'din', 'Dinv23420' => 'din', 'Dinv27963' => 'din', 'Dinv37020' => 'din', 'Duzib106G0585' => 'dzi', 'Duzib128G1230' => 'dzi', 'Duzib150G0044' => 'dzi', 'Duzib168G0652' => 'dzi', 'Duzib168G1233' => 'dzi', 'Duzib177G0166' => 'dzi', 'Duzib187G1149' => 'dzi', 'Duzib248G0140' => 'dzi', 'ECA233G4767' => 'eca', 'ECA240G2387' => 'eca', 'ECA248G2241' => 'eca', 'ECA248G3436' => 'eca', 'EL10Ac3g06826' => 'bvu', 'EL10Ac7g17301' => 'bvu', 'Eucgr.A02101' => 'egr', 'Eucgr.C03003' => 'egr', 'Eucgr.J01767' => 'egr', 'FAN11G0616' => 'fan', 'FAN11G2869' => 'fan', 'FAN15G3292' => 'fan', 'FAN16G1601' => 'fan', 'FAN20G1683' => 'fan', 'FAN21G0103' => 'fan', 'FAN21G0155' => 'fan', 'FAN24G1394' => 'fan', 'FAN25G1540' => 'fan', 'FAN25G3141' => 'fan', 'FAN27G2292' => 'fan', 'FvH4_2g32200' => 'fve', 'FvH4_3g13430' => 'fve', 'FvH4_3g45580' => 'fve', 'Glyma.04G050000' => 'gma', 'Glyma.06G050600' => 'gma', 'Glyma.14G092600' => 'gma', 'Glyma.16G040500' => 'gma', 'Glyma.16G094400' => 'gma', 'Glyma.17G230900' => 'gma', 'Glyma.19G112600' => 'gma', 'Gohir.A03G022200' => 'ghi', 'Gohir.A05G044000' => 'ghi', 'Gohir.A07G022148' => 'ghi', 'Gohir.A11G235700' => 'ghi', 'Gohir.A13G099700' => 'ghi', 'Gohir.A13G099800' => 'ghi', 'Gohir.D01G129200' => 'ghi', 'Gohir.D03G146500' => 'ghi', 'Gohir.D05G045600' => 'ghi', 'Gohir.D07G023100' => 'ghi', 'Gohir.D11G246600' => 'ghi', 'Gohir.D13G103200' => 'ghi', 'Gorai.001G023800' => 'gra', 'Gorai.003G153900' => 'gra', 'Gorai.007G262500' => 'gra', 'Gorai.009G047000' => 'gra', 'Gorai.013G115700' => 'gra', 'GSVIVG01025467001' => 'vvi', 'GSVIVG01033408001' => 'vvi', 'GSVIVG01035342001' => 'vvi', 'HanXRQChr01g0021411' => 'han', 'HanXRQChr01g0024751' => 'han', 'HanXRQChr02g0054561' => 'han', 'HanXRQChr03g0078821' => 'han', 'HanXRQChr13g0410641' => 'han', 'HanXRQChr17g0556881' => 'han', 'Haze_05180' => 'cav', 'Haze_18219' => 'cav', 'Haze_18220' => 'cav', 'Haze_19425' => 'cav', 'Haze_22942' => 'cav', 'Hma1.2p1_0589F.1_g184900' => 'hma', 'Hma1.2p1_1266F.1_g271400' => 'hma', 'HPP92_006480' => 'vpl', 'HPP92_010133' => 'vpl', 'HPP92_015920' => 'vpl', 'HPP92_015935' => 'vpl', 'Hund03362' => 'sun', 'Hund19477' => 'sun', 'Hund20139' => 'sun', 'Lalb_Chr08g0245121' => 'lal', 'Lalb_Chr11g0063081' => 'lal', 'Lalb_Chr11g0063091' => 'lal', 'Lalb_Chr14g0364541' => 'lal', 'Lalb_Chr14g0367871' => 'lal', 'Lalb_Chr22g0355981' => 'lal', 'Lalb_Chr22g0359121' => 'lal', 'Lj1A522G59' => 'lonja', 'Lj1A523G15' => 'lonja', 'Lj1C1136T11' => 'lonja', 'Lj1C1153G5' => 'lonja', 'Lj1g0008729' => 'lja', 'Lj1g0027715' => 'lja', 'Lj4g0016461' => 'lja', 'Lj7A282T45' => 'lonja', 'Lsat_1_v5_gn_1_59781' => 'lsa', 'Lsat_1_v5_gn_1_68841' => 'lsa', 'Lsat_1_v5_gn_5_44541' => 'lsa', 'Lsat_1_v5_gn_6_37381' => 'lsa', 'Manes.03G046400' => 'mes', 'Manes.03G087603' => 'mes', 'Manes.08G144800' => 'mes', 'Manes.09G140800' => 'mes', 'Manes.15G109000' => 'mes', 'Manes.16G077700' => 'mes', 'Mapoly0028s0111' => 'mpo', 'MapolyY_B0003' => 'mpo', 'MBI01_g13089_MAGBIO' => 'mbi', 'MBI01_g16590_MAGBIO' => 'mbi', 'MBI04_g38352_MAGBIO' => 'mbi', 'MBI06_g30437_MAGBIO' => 'mbi', 'MBI06_g47202_MAGBIO' => 'mbi', 'MBI07_g10932_MAGBIO' => 'mbi', 'MD03G1003700' => 'mdo', 'MD05G1241700' => 'mdo', 'MD08G1073700' => 'mdo', 'MD10G1223600' => 'mdo', 'MD11G1003600' => 'mdo', 'MD12G1004100' => 'mdo', 'MD12G1004300' => 'mdo', 'MD14G1003000' => 'mdo', 'Medtr1g016800' => 'mtr', 'Medtr7g085680' => 'mtr', 'Medtr8g070650' => 'mtr', 'MELO3C010764.2' => 'cme', 'MELO3C015579.2' => 'cme', 'MELO3C016856.2' => 'cme', 'MELO3C026883.2' => 'cme', 'Migut.A00156' => 'egut', 'Migut.E01554' => 'egut', 'Migut.N00555' => 'egut', 'MSTRG.11673' => 'ama', 'MSTRG.14044' => 'ama', 'MSTRG.18024' => 'ama', 'MSTRG.25937' => 'ama', 'Nitab4.5_0000359g0180' => 'nta', 'Nitab4.5_0000551g0150' => 'nta', 'Nitab4.5_0000626g0020' => 'nta', 'Nitab4.5_0006311g0010' => 'nta', 'Nitab4.5_0011070g0020' => 'nta', 'Nitab4.5_0026702g0010' => 'nta', 'Nn2g12309' => 'nnu', 'Nn2g15858' => 'nnu', 'Nn3g21962' => 'nnu', 'Nn4g26653' => 'nnu', 'Nn6g35391' => 'nnu', 'Nn7g35863' => 'nnu', 'Oeu023701.1' => 'oeu', 'Oeu023951.1' => 'oeu', 'Oeu029403.1' => 'oeu', 'Oeu036352.1' => 'oeu', 'Oeu057698.1' => 'oeu', 'Os01g0680700' => 'osa', 'Os05g0541700' => 'osa', 'Os05g0556600' => 'osa', 'Peaxi162Scf00436g00120' => 'pax', 'Peaxi162Scf00463g00018' => 'pax', 'Peaxi162Scf00705g00312' => 'pax', 'PGR042G0242' => 'pgr', 'PGR044G0779' => 'pgr', 'PGR119G1054' => 'pgr', 'PGSC0003DMG400013825' => 'stu', 'PGSC0003DMG400032167' => 'stu', 'Phvul.001G111300' => 'pvu', 'Phvul.003G274400' => 'pvu', 'Phvul.009G075900' => 'pvu', 'Potri.001G004000' => 'ptr', 'Potri.001G073400' => 'ptr', 'Potri.003G157500' => 'ptr', 'Potri.003G221000' => 'ptr', 'Potri.006G233100' => 'ptr', 'Potri.013G057600' => 'ptr', 'Potri.018G059200' => 'ptr', 'Potri.019G035300' => 'ptr', 'Pp3c17_14270' => 'ppa', 'Pp3c1_33320' => 'ppa', 'Pp3c2_2700' => 'ppa', 'Pp3c5_17000' => 'ppa', 'Pp3c6_15840' => 'ppa', 'Prupe.1G415100' => 'ppe', 'Prupe.4G121700' => 'ppe', 'Prupe.6G003400' => 'ppe', 'Prupe.7G004700' => 'ppe', 'Psat4g112440' => 'psa', 'Psat6g018840' => 'psa', 'Psat6g151920' => 'psa', 'PSO063G1120' => 'pso', 'PSO339G3326' => 'pso', 'PSO384G0980' => 'pso', 'PSO832G1989' => 'pso', 'QL01p009060' => 'qlo', 'QL02p001657' => 'qlo', 'QL07p018365' => 'qlo', 'QL11p010646' => 'qlo', 'RcHm_v2.0_Chr5g0022171' => 'rch', 'RcHm_v2.0_Chr5g0083771' => 'rch', 'RcHm_v2.0_Chr6g0310471' => 'rch', 'Rhsim09G0033500' => 'rsi', 'Rhsim11G0047300' => 'rsi', 'Sabra01G0002700' => 'sbr', 'Sabra03G0114200' => 'sbr', 'Sabra03G0164500' => 'sbr', 'Sabra06G0181600' => 'sbr', 'Sabra06G0181700' => 'sbr', 'Sabra13G0051300' => 'sbr', 'Sabra18G0050200' => 'sbr', 'Sabra19G0043800' => 'sbr', 'Sabra19G0047100' => 'sbr', 'SalBow1G0862' => 'sbo', 'SalBow4G2002' => 'sbo', 'Sc05g0005600' => 'sci', 'Sc09g0009650' => 'sci', 'Sc13g0002660' => 'sci', 'Sed0000349' => 'sed', 'Sed0009703' => 'sed', 'Sed0010726' => 'sed', 'Sed0018755' => 'sed', 'Sed0022728' => 'sed', 'Sed0028161' => 'sed', 'SEGI_05304' => 'sgi', 'SEGI_05342' => 'sgi', 'SEGI_05736' => 'sgi', 'SEGI_06078' => 'sgi', 'SEGI_11986' => 'sgi', 'SEGI_15756' => 'sgi', 'SEGI_34399' => 'sgi', 'SEGI_40027' => 'sgi', 'SEGI_40545' => 'sgi', 'SGA_v2.0_scaffold163G38039' => 'sas', 'SGA_v2.0_scaffold169G38680' => 'sas', 'SGA_v2.0_scaffold6G03307' => 'sas', 'SMO118G0421' => 'smo', 'Solyc01g005570.4' => 'sly', 'Solyc01g005580.2' => 'sly', 'Solyc08g065840.3' => 'sly', 'Sopen01g001600' => 'spe', 'Sopen01g001610' => 'spe', 'Sopen08g019540' => 'spe', 'Sp1g41020' => 'spa', 'Sp2g09410' => 'spa', 'Sp3g02850' => 'spa', 'TAR084G0004' => 'tar', 'TAR369G0034' => 'tar', 'TAR374G0078' => 'tar', 'TAR374G0322' => 'tar', 'TAR383G0608' => 'tar', 'TAR623G0230' => 'tar', 'TAR624G0555' => 'tar', 'TAR625G0451' => 'tar', 'TAR626G0864' => 'tar', 'TAR633G0754' => 'tar', 'THA.LOC104799179' => 'tha', 'THA.LOC104806233' => 'tha', 'THA.LOC104810326' => 'tha', 'THA.LOC104811967' => 'tha', 'THA.LOC104812927' => 'tha', 'Thecc.02G000400' => 'tca', 'Thecc.05G250200' => 'tca', 'Thecc.09G050800' => 'tca', 'Thecc.09G199800' => 'tca', 'Thhalv10000929m.g' => 'esa', 'Thhalv10011785m.g' => 'esa', 'Thhalv10025632m.g' => 'esa', 'TPR.G13008' => 'tpr', 'TPR.G19828' => 'tpr', 'TPR.G5908' => 'tpr', 'TWI32G0013' => 'twi', 'TWI34G0225' => 'twi', 'TWI34G0691' => 'twi', 'TWI34G0951' => 'twi', 'TWI38G0460' => 'twi', 'TWI60G0252' => 'twi', 'TWI60G1374' => 'twi', 'TWI63G1359' => 'twi', 'TWI63G1836' => 'twi', 'unitig_52.g17517' => 'ugi', 'vmacro00167' => 'vma', 'vmacro12565' => 'vma', 'vmacro12600' => 'vma', 'VMungo0251G1051' => 'vmu', 'VMungo0647G2216' => 'vmu', 'VMungo1309G0835' => 'vmu', 'VMungo1383G3028' => 'vmu', 'Zm00001eb043840' => 'zma', 'Zm00001eb044570' => 'zma', 'Zm00001eb061640' => 'zma', 'Zm00001eb065830' => 'zma', 'Zm00001eb112230' => 'zma', 'Zm00001eb142900' => 'zma', 'Zm00001eb156700' => 'zma', 'Zm00001eb183550' => 'zma', 'Zm00001eb212530' => 'zma', 'Zm00001eb285870' => 'zma', 'Zm00001eb294400' => 'zma', 'Zm00001eb295380' => 'zma', 'Zm00001eb342360' => 'zma', 'Zm00001eb343240' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001435', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001435' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001435', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001435' ) ), 'genes' => array( 'A01p12000' => 'bna', 'A05p17510' => 'bna', 'A05p43510' => 'bna', 'A06p00240' => 'bna', 'A08p00700' => 'bna', 'Aa31LG10G1140' => 'aar', 'Aa31LG5G14460' => 'aar', 'Aa31LG9G8560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2730' => 'aag', 'Actinidia06912' => 'ach', 'Actinidia22081' => 'ach', 'Actinidia30299' => 'ach', 'Actinidia30551' => 'ach', 'Ah.08g212240' => 'amhyb', 'Ah.11g044540' => 'amhyb', 'Ah.13g075430' => 'amhyb', 'Ah.15g091840' => 'amhyb', 'AL1G63390' => 'aly', 'AL3G13770' => 'aly', 'AL7G33610' => 'aly', 'Aqoxy199s001' => 'aox', 'Aqoxy199s002' => 'aox', 'Aqoxy1G00474' => 'aox', 'Aqoxy2G00450' => 'aox', 'Aqoxy7G01333' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B43C0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0S58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3WVNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7Z6ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP2KRU' => 'arhy', 'AT1G55340' => 'ath', 'AT3G03880' => 'ath', 'AT4G20300' => 'ath', 'ATR0219G009' => 'atr', 'ATR0737G061' => 'atr', 'ATR0737G062' => 'atr', 'ATR1125G091' => 'atr', 'Atru.chr2.1394' => 'acertr', 'Atru.chr3.2105' => 'acertr', 'Atru.chr7.2022' => 'acertr', 'Atru.chr7.2023' => 'acertr', 'AUR62009202' => 'cqu', 'AUR62032047' => 'cqu', 'AUR62032702' => 'cqu', 'AUR62040199' => 'cqu', 'AUR62040987' => 'cqu', 'AUR62042965' => 'cqu', 'AUR62043050' => 'cqu', 'BcaB02g10825' => 'bca', 'BcaB03g11667' => 'bca', 'BcaB04g16963' => 'bca', 'BcaC01g01516' => 'bca', 'BcaC05g29900' => 'bca', 'BcaC05g30246' => 'bca', 'BcaC05g30289' => 'bca', 'BcaC08g43617' => 'bca', 'BcaC08g44194' => 'bca', 'BcaC09g51323' => 'bca', 'BcaNung03719' => 'bca', 'BolC1t03504H' => 'bol', 'BolC3t20569H' => 'bol', 'BolC3t21578H' => 'bol', 'BolC5t34972H' => 'bol', 'BolC6t36108H' => 'bol', 'BolC6t36792H' => 'bol', 'BraA01t01142Z' => 'bra', 'BraA05t20645Z' => 'bra', 'BraA05t23091Z' => 'bra', 'BraA06t23240Z' => 'bra', 'BraA08t32127Z' => 'bra', 'C01p35460' => 'bna', 'C03p82870' => 'bna', 'C03p92640' => 'bna', 'C06p10320' => 'bna', 'C06p15990' => 'bna', 'CAN.G1327.8' => 'can', 'CAN.G1834.8' => 'can', 'CAN.G1834.9' => 'can', 'CANSAT11G2351' => 'cansat', 'CANSAT25G0463' => 'cansat', 'CANSAT35G0446' => 'cansat', 'CARHR045000' => 'chi', 'CARHR078000' => 'chi', 'CARHR178340' => 'chi', 'CARHR227120' => 'chi', 'Carub.0001s4385' => 'cru', 'Carub.0003s0307' => 'cru', 'Carub.0007s2088' => 'cru', 'Ca_08270_v3' => 'car', 'Ca_13182_v3' => 'car', 'Ca_22536_v3' => 'car', 'Cc01_g00060' => 'ccan', 'Cc06_g23040' => 'ccan', 'Cc08_g10310' => 'ccan', 'Cc09_g04520' => 'ccan', 'CDE02G3633' => 'cde', 'CDE02G3839' => 'cde', 'CDE05G2098' => 'cde', 'CDE09G1322' => 'cde', 'CDE10G0959' => 'cde', 'Cfa009563' => 'cfa', 'Cfa016447' => 'cfa', 'Cfa017930' => 'cfa', 'Ciclev10009045m.g' => 'ccl', 'Ciclev10015606m.g' => 'ccl', 'Ciclev10016677m.g' => 'ccl', 'Ciclev10022079m.g' => 'ccl', 'CiPaw.09G141100' => 'cil', 'CiPaw.10G001200' => 'cil', 'CiPaw.10G108800' => 'cil', 'CiPaw.13G177000' => 'cil', 'CiPaw.14G136800' => 'cil', 'CiPaw.15G042000' => 'cil', 'ClCG03G014530' => 'cla', 'ClCG05G017720' => 'cla', 'ClCG08G016910' => 'cla', 'ClCG10G013410' => 'cla', 'COL.COLO4_05793' => 'col', 'COL.COLO4_21025' => 'col', 'COL.COLO4_25013' => 'col', 'COL.COLO4_36082' => 'col', 'Cpa.g.sc119.41' => 'cpa', 'Cpa.g.sc51.129' => 'cpa', 'Cpa.g.sc7.189' => 'cpa', 'CsaV3_1G041660' => 'csa', 'CsaV3_2G025700' => 'csa', 'CsaV3_3G043230' => 'csa', 'CsaV3_4G035460' => 'csa', 'CSS0004523' => 'camsi', 'CSS0005800' => 'camsi', 'CSS0040277' => 'camsi', 'CSS0047607' => 'camsi', 'DCAR_000780' => 'dca', 'DCAR_001252' => 'dca', 'DCAR_001977' => 'dca', 'DCAR_004366' => 'dca', 'DCAR_013684' => 'dca', 'Dinv13470' => 'din', 'Dinv13471' => 'din', 'Dinv14576' => 'din', 'Dinv23420' => 'din', 'Dinv27963' => 'din', 'Dinv37020' => 'din', 'Duzib106G0585' => 'dzi', 'Duzib128G1230' => 'dzi', 'Duzib150G0044' => 'dzi', 'Duzib168G0652' => 'dzi', 'Duzib168G1233' => 'dzi', 'Duzib177G0166' => 'dzi', 'Duzib187G1149' => 'dzi', 'Duzib248G0140' => 'dzi', 'ECA233G4767' => 'eca', 'ECA240G2387' => 'eca', 'ECA248G2241' => 'eca', 'ECA248G3436' => 'eca', 'EL10Ac3g06826' => 'bvu', 'EL10Ac7g17301' => 'bvu', 'Eucgr.A02101' => 'egr', 'Eucgr.C03003' => 'egr', 'Eucgr.J01767' => 'egr', 'FAN11G0616' => 'fan', 'FAN11G2869' => 'fan', 'FAN15G3292' => 'fan', 'FAN16G1601' => 'fan', 'FAN20G1683' => 'fan', 'FAN21G0103' => 'fan', 'FAN21G0155' => 'fan', 'FAN24G1394' => 'fan', 'FAN25G1540' => 'fan', 'FAN25G3141' => 'fan', 'FAN27G2292' => 'fan', 'FvH4_2g32200' => 'fve', 'FvH4_3g13430' => 'fve', 'FvH4_3g45580' => 'fve', 'Glyma.04G050000' => 'gma', 'Glyma.06G050600' => 'gma', 'Glyma.14G092600' => 'gma', 'Glyma.16G040500' => 'gma', 'Glyma.16G094400' => 'gma', 'Glyma.17G230900' => 'gma', 'Glyma.19G112600' => 'gma', 'Gohir.A03G022200' => 'ghi', 'Gohir.A05G044000' => 'ghi', 'Gohir.A07G022148' => 'ghi', 'Gohir.A11G235700' => 'ghi', 'Gohir.A13G099700' => 'ghi', 'Gohir.A13G099800' => 'ghi', 'Gohir.D01G129200' => 'ghi', 'Gohir.D03G146500' => 'ghi', 'Gohir.D05G045600' => 'ghi', 'Gohir.D07G023100' => 'ghi', 'Gohir.D11G246600' => 'ghi', 'Gohir.D13G103200' => 'ghi', 'Gorai.001G023800' => 'gra', 'Gorai.003G153900' => 'gra', 'Gorai.007G262500' => 'gra', 'Gorai.009G047000' => 'gra', 'Gorai.013G115700' => 'gra', 'GSVIVG01025467001' => 'vvi', 'GSVIVG01033408001' => 'vvi', 'GSVIVG01035342001' => 'vvi', 'HanXRQChr01g0021411' => 'han', 'HanXRQChr01g0024751' => 'han', 'HanXRQChr02g0054561' => 'han', 'HanXRQChr03g0078821' => 'han', 'HanXRQChr13g0410641' => 'han', 'HanXRQChr17g0556881' => 'han', 'Haze_05180' => 'cav', 'Haze_18219' => 'cav', 'Haze_18220' => 'cav', 'Haze_19425' => 'cav', 'Haze_22942' => 'cav', 'Hma1.2p1_0589F.1_g184900' => 'hma', 'Hma1.2p1_1266F.1_g271400' => 'hma', 'HPP92_006480' => 'vpl', 'HPP92_010133' => 'vpl', 'HPP92_015920' => 'vpl', 'HPP92_015935' => 'vpl', 'Hund03362' => 'sun', 'Hund19477' => 'sun', 'Hund20139' => 'sun', 'Lalb_Chr08g0245121' => 'lal', 'Lalb_Chr11g0063081' => 'lal', 'Lalb_Chr11g0063091' => 'lal', 'Lalb_Chr14g0364541' => 'lal', 'Lalb_Chr14g0367871' => 'lal', 'Lalb_Chr22g0355981' => 'lal', 'Lalb_Chr22g0359121' => 'lal', 'Lj1A522G59' => 'lonja', 'Lj1A523G15' => 'lonja', 'Lj1C1136T11' => 'lonja', 'Lj1C1153G5' => 'lonja', 'Lj1g0008729' => 'lja', 'Lj1g0027715' => 'lja', 'Lj4g0016461' => 'lja', 'Lj7A282T45' => 'lonja', 'Lsat_1_v5_gn_1_59781' => 'lsa', 'Lsat_1_v5_gn_1_68841' => 'lsa', 'Lsat_1_v5_gn_5_44541' => 'lsa', 'Lsat_1_v5_gn_6_37381' => 'lsa', 'Manes.03G046400' => 'mes', 'Manes.03G087603' => 'mes', 'Manes.08G144800' => 'mes', 'Manes.09G140800' => 'mes', 'Manes.15G109000' => 'mes', 'Manes.16G077700' => 'mes', 'Mapoly0028s0111' => 'mpo', 'MapolyY_B0003' => 'mpo', 'MBI01_g13089_MAGBIO' => 'mbi', 'MBI01_g16590_MAGBIO' => 'mbi', 'MBI04_g38352_MAGBIO' => 'mbi', 'MBI06_g30437_MAGBIO' => 'mbi', 'MBI06_g47202_MAGBIO' => 'mbi', 'MBI07_g10932_MAGBIO' => 'mbi', 'MD03G1003700' => 'mdo', 'MD05G1241700' => 'mdo', 'MD08G1073700' => 'mdo', 'MD10G1223600' => 'mdo', 'MD11G1003600' => 'mdo', 'MD12G1004100' => 'mdo', 'MD12G1004300' => 'mdo', 'MD14G1003000' => 'mdo', 'Medtr1g016800' => 'mtr', 'Medtr7g085680' => 'mtr', 'Medtr8g070650' => 'mtr', 'MELO3C010764.2' => 'cme', 'MELO3C015579.2' => 'cme', 'MELO3C016856.2' => 'cme', 'MELO3C026883.2' => 'cme', 'Migut.A00156' => 'egut', 'Migut.E01554' => 'egut', 'Migut.N00555' => 'egut', 'MSTRG.11673' => 'ama', 'MSTRG.14044' => 'ama', 'MSTRG.18024' => 'ama', 'MSTRG.25937' => 'ama', 'Nitab4.5_0000359g0180' => 'nta', 'Nitab4.5_0000551g0150' => 'nta', 'Nitab4.5_0000626g0020' => 'nta', 'Nitab4.5_0006311g0010' => 'nta', 'Nitab4.5_0011070g0020' => 'nta', 'Nitab4.5_0026702g0010' => 'nta', 'Nn2g12309' => 'nnu', 'Nn2g15858' => 'nnu', 'Nn3g21962' => 'nnu', 'Nn4g26653' => 'nnu', 'Nn6g35391' => 'nnu', 'Nn7g35863' => 'nnu', 'Oeu023701.1' => 'oeu', 'Oeu023951.1' => 'oeu', 'Oeu029403.1' => 'oeu', 'Oeu036352.1' => 'oeu', 'Oeu057698.1' => 'oeu', 'Os01g0680700' => 'osa', 'Os05g0541700' => 'osa', 'Os05g0556600' => 'osa', 'Peaxi162Scf00436g00120' => 'pax', 'Peaxi162Scf00463g00018' => 'pax', 'Peaxi162Scf00705g00312' => 'pax', 'PGR042G0242' => 'pgr', 'PGR044G0779' => 'pgr', 'PGR119G1054' => 'pgr', 'PGSC0003DMG400013825' => 'stu', 'PGSC0003DMG400032167' => 'stu', 'Phvul.001G111300' => 'pvu', 'Phvul.003G274400' => 'pvu', 'Phvul.009G075900' => 'pvu', 'Potri.001G004000' => 'ptr', 'Potri.001G073400' => 'ptr', 'Potri.003G157500' => 'ptr', 'Potri.003G221000' => 'ptr', 'Potri.006G233100' => 'ptr', 'Potri.013G057600' => 'ptr', 'Potri.018G059200' => 'ptr', 'Potri.019G035300' => 'ptr', 'Pp3c17_14270' => 'ppa', 'Pp3c1_33320' => 'ppa', 'Pp3c2_2700' => 'ppa', 'Pp3c5_17000' => 'ppa', 'Pp3c6_15840' => 'ppa', 'Prupe.1G415100' => 'ppe', 'Prupe.4G121700' => 'ppe', 'Prupe.6G003400' => 'ppe', 'Prupe.7G004700' => 'ppe', 'Psat4g112440' => 'psa', 'Psat6g018840' => 'psa', 'Psat6g151920' => 'psa', 'PSO063G1120' => 'pso', 'PSO339G3326' => 'pso', 'PSO384G0980' => 'pso', 'PSO832G1989' => 'pso', 'QL01p009060' => 'qlo', 'QL02p001657' => 'qlo', 'QL07p018365' => 'qlo', 'QL11p010646' => 'qlo', 'RcHm_v2.0_Chr5g0022171' => 'rch', 'RcHm_v2.0_Chr5g0083771' => 'rch', 'RcHm_v2.0_Chr6g0310471' => 'rch', 'Rhsim09G0033500' => 'rsi', 'Rhsim11G0047300' => 'rsi', 'Sabra01G0002700' => 'sbr', 'Sabra03G0114200' => 'sbr', 'Sabra03G0164500' => 'sbr', 'Sabra06G0181600' => 'sbr', 'Sabra06G0181700' => 'sbr', 'Sabra13G0051300' => 'sbr', 'Sabra18G0050200' => 'sbr', 'Sabra19G0043800' => 'sbr', 'Sabra19G0047100' => 'sbr', 'SalBow1G0862' => 'sbo', 'SalBow4G2002' => 'sbo', 'Sc05g0005600' => 'sci', 'Sc09g0009650' => 'sci', 'Sc13g0002660' => 'sci', 'Sed0000349' => 'sed', 'Sed0009703' => 'sed', 'Sed0010726' => 'sed', 'Sed0018755' => 'sed', 'Sed0022728' => 'sed', 'Sed0028161' => 'sed', 'SEGI_05304' => 'sgi', 'SEGI_05342' => 'sgi', 'SEGI_05736' => 'sgi', 'SEGI_06078' => 'sgi', 'SEGI_11986' => 'sgi', 'SEGI_15756' => 'sgi', 'SEGI_34399' => 'sgi', 'SEGI_40027' => 'sgi', 'SEGI_40545' => 'sgi', 'SGA_v2.0_scaffold163G38039' => 'sas', 'SGA_v2.0_scaffold169G38680' => 'sas', 'SGA_v2.0_scaffold6G03307' => 'sas', 'SMO118G0421' => 'smo', 'Solyc01g005570.4' => 'sly', 'Solyc01g005580.2' => 'sly', 'Solyc08g065840.3' => 'sly', 'Sopen01g001600' => 'spe', 'Sopen01g001610' => 'spe', 'Sopen08g019540' => 'spe', 'Sp1g41020' => 'spa', 'Sp2g09410' => 'spa', 'Sp3g02850' => 'spa', 'TAR084G0004' => 'tar', 'TAR369G0034' => 'tar', 'TAR374G0078' => 'tar', 'TAR374G0322' => 'tar', 'TAR383G0608' => 'tar', 'TAR623G0230' => 'tar', 'TAR624G0555' => 'tar', 'TAR625G0451' => 'tar', 'TAR626G0864' => 'tar', 'TAR633G0754' => 'tar', 'THA.LOC104799179' => 'tha', 'THA.LOC104806233' => 'tha', 'THA.LOC104810326' => 'tha', 'THA.LOC104811967' => 'tha', 'THA.LOC104812927' => 'tha', 'Thecc.02G000400' => 'tca', 'Thecc.05G250200' => 'tca', 'Thecc.09G050800' => 'tca', 'Thecc.09G199800' => 'tca', 'Thhalv10000929m.g' => 'esa', 'Thhalv10011785m.g' => 'esa', 'Thhalv10025632m.g' => 'esa', 'TPR.G13008' => 'tpr', 'TPR.G19828' => 'tpr', 'TPR.G5908' => 'tpr', 'TWI32G0013' => 'twi', 'TWI34G0225' => 'twi', 'TWI34G0691' => 'twi', 'TWI34G0951' => 'twi', 'TWI38G0460' => 'twi', 'TWI60G0252' => 'twi', 'TWI60G1374' => 'twi', 'TWI63G1359' => 'twi', 'TWI63G1836' => 'twi', 'unitig_52.g17517' => 'ugi', 'vmacro00167' => 'vma', 'vmacro12565' => 'vma', 'vmacro12600' => 'vma', 'VMungo0251G1051' => 'vmu', 'VMungo0647G2216' => 'vmu', 'VMungo1309G0835' => 'vmu', 'VMungo1383G3028' => 'vmu', 'Zm00001eb043840' => 'zma', 'Zm00001eb044570' => 'zma', 'Zm00001eb061640' => 'zma', 'Zm00001eb065830' => 'zma', 'Zm00001eb112230' => 'zma', 'Zm00001eb142900' => 'zma', 'Zm00001eb156700' => 'zma', 'Zm00001eb183550' => 'zma', 'Zm00001eb212530' => 'zma', 'Zm00001eb285870' => 'zma', 'Zm00001eb294400' => 'zma', 'Zm00001eb295380' => 'zma', 'Zm00001eb342360' => 'zma', 'Zm00001eb343240' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001435' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001435' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001435' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001435' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001435', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12000' => 'bna', 'A05p17510' => 'bna', 'A05p43510' => 'bna', 'A06p00240' => 'bna', 'A08p00700' => 'bna', 'Aa31LG10G1140' => 'aar', 'Aa31LG5G14460' => 'aar', 'Aa31LG9G8560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2730' => 'aag', 'Actinidia06912' => 'ach', 'Actinidia22081' => 'ach', 'Actinidia30299' => 'ach', 'Actinidia30551' => 'ach', 'Ah.08g212240' => 'amhyb', 'Ah.11g044540' => 'amhyb', 'Ah.13g075430' => 'amhyb', 'Ah.15g091840' => 'amhyb', 'AL1G63390' => 'aly', 'AL3G13770' => 'aly', 'AL7G33610' => 'aly', 'Aqoxy199s001' => 'aox', 'Aqoxy199s002' => 'aox', 'Aqoxy1G00474' => 'aox', 'Aqoxy2G00450' => 'aox', 'Aqoxy7G01333' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B43C0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0S58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3WVNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7Z6ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP2KRU' => 'arhy', 'AT1G55340' => 'ath', 'AT3G03880' => 'ath', 'AT4G20300' => 'ath', 'ATR0219G009' => 'atr', 'ATR0737G061' => 'atr', 'ATR0737G062' => 'atr', 'ATR1125G091' => 'atr', 'Atru.chr2.1394' => 'acertr', 'Atru.chr3.2105' => 'acertr', 'Atru.chr7.2022' => 'acertr', 'Atru.chr7.2023' => 'acertr', 'AUR62009202' => 'cqu', 'AUR62032047' => 'cqu', 'AUR62032702' => 'cqu', 'AUR62040199' => 'cqu', 'AUR62040987' => 'cqu', 'AUR62042965' => 'cqu', 'AUR62043050' => 'cqu', 'BcaB02g10825' => 'bca', 'BcaB03g11667' => 'bca', 'BcaB04g16963' => 'bca', 'BcaC01g01516' => 'bca', 'BcaC05g29900' => 'bca', 'BcaC05g30246' => 'bca', 'BcaC05g30289' => 'bca', 'BcaC08g43617' => 'bca', 'BcaC08g44194' => 'bca', 'BcaC09g51323' => 'bca', 'BcaNung03719' => 'bca', 'BolC1t03504H' => 'bol', 'BolC3t20569H' => 'bol', 'BolC3t21578H' => 'bol', 'BolC5t34972H' => 'bol', 'BolC6t36108H' => 'bol', 'BolC6t36792H' => 'bol', 'BraA01t01142Z' => 'bra', 'BraA05t20645Z' => 'bra', 'BraA05t23091Z' => 'bra', 'BraA06t23240Z' => 'bra', 'BraA08t32127Z' => 'bra', 'C01p35460' => 'bna', 'C03p82870' => 'bna', 'C03p92640' => 'bna', 'C06p10320' => 'bna', 'C06p15990' => 'bna', 'CAN.G1327.8' => 'can', 'CAN.G1834.8' => 'can', 'CAN.G1834.9' => 'can', 'CANSAT11G2351' => 'cansat', 'CANSAT25G0463' => 'cansat', 'CANSAT35G0446' => 'cansat', 'CARHR045000' => 'chi', 'CARHR078000' => 'chi', 'CARHR178340' => 'chi', 'CARHR227120' => 'chi', 'Carub.0001s4385' => 'cru', 'Carub.0003s0307' => 'cru', 'Carub.0007s2088' => 'cru', 'Ca_08270_v3' => 'car', 'Ca_13182_v3' => 'car', 'Ca_22536_v3' => 'car', 'Cc01_g00060' => 'ccan', 'Cc06_g23040' => 'ccan', 'Cc08_g10310' => 'ccan', 'Cc09_g04520' => 'ccan', 'CDE02G3633' => 'cde', 'CDE02G3839' => 'cde', 'CDE05G2098' => 'cde', 'CDE09G1322' => 'cde', 'CDE10G0959' => 'cde', 'Cfa009563' => 'cfa', 'Cfa016447' => 'cfa', 'Cfa017930' => 'cfa', 'Ciclev10009045m.g' => 'ccl', 'Ciclev10015606m.g' => 'ccl', 'Ciclev10016677m.g' => 'ccl', 'Ciclev10022079m.g' => 'ccl', 'CiPaw.09G141100' => 'cil', 'CiPaw.10G001200' => 'cil', 'CiPaw.10G108800' => 'cil', 'CiPaw.13G177000' => 'cil', 'CiPaw.14G136800' => 'cil', 'CiPaw.15G042000' => 'cil', 'ClCG03G014530' => 'cla', 'ClCG05G017720' => 'cla', 'ClCG08G016910' => 'cla', 'ClCG10G013410' => 'cla', 'COL.COLO4_05793' => 'col', 'COL.COLO4_21025' => 'col', 'COL.COLO4_25013' => 'col', 'COL.COLO4_36082' => 'col', 'Cpa.g.sc119.41' => 'cpa', 'Cpa.g.sc51.129' => 'cpa', 'Cpa.g.sc7.189' => 'cpa', 'CsaV3_1G041660' => 'csa', 'CsaV3_2G025700' => 'csa', 'CsaV3_3G043230' => 'csa', 'CsaV3_4G035460' => 'csa', 'CSS0004523' => 'camsi', 'CSS0005800' => 'camsi', 'CSS0040277' => 'camsi', 'CSS0047607' => 'camsi', 'DCAR_000780' => 'dca', 'DCAR_001252' => 'dca', 'DCAR_001977' => 'dca', 'DCAR_004366' => 'dca', 'DCAR_013684' => 'dca', 'Dinv13470' => 'din', 'Dinv13471' => 'din', 'Dinv14576' => 'din', 'Dinv23420' => 'din', 'Dinv27963' => 'din', 'Dinv37020' => 'din', 'Duzib106G0585' => 'dzi', 'Duzib128G1230' => 'dzi', 'Duzib150G0044' => 'dzi', 'Duzib168G0652' => 'dzi', 'Duzib168G1233' => 'dzi', 'Duzib177G0166' => 'dzi', 'Duzib187G1149' => 'dzi', 'Duzib248G0140' => 'dzi', 'ECA233G4767' => 'eca', 'ECA240G2387' => 'eca', 'ECA248G2241' => 'eca', 'ECA248G3436' => 'eca', 'EL10Ac3g06826' => 'bvu', 'EL10Ac7g17301' => 'bvu', 'Eucgr.A02101' => 'egr', 'Eucgr.C03003' => 'egr', 'Eucgr.J01767' => 'egr', 'FAN11G0616' => 'fan', 'FAN11G2869' => 'fan', 'FAN15G3292' => 'fan', 'FAN16G1601' => 'fan', 'FAN20G1683' => 'fan', 'FAN21G0103' => 'fan', 'FAN21G0155' => 'fan', 'FAN24G1394' => 'fan', 'FAN25G1540' => 'fan', 'FAN25G3141' => 'fan', 'FAN27G2292' => 'fan', 'FvH4_2g32200' => 'fve', 'FvH4_3g13430' => 'fve', 'FvH4_3g45580' => 'fve', 'Glyma.04G050000' => 'gma', 'Glyma.06G050600' => 'gma', 'Glyma.14G092600' => 'gma', 'Glyma.16G040500' => 'gma', 'Glyma.16G094400' => 'gma', 'Glyma.17G230900' => 'gma', 'Glyma.19G112600' => 'gma', 'Gohir.A03G022200' => 'ghi', 'Gohir.A05G044000' => 'ghi', 'Gohir.A07G022148' => 'ghi', 'Gohir.A11G235700' => 'ghi', 'Gohir.A13G099700' => 'ghi', 'Gohir.A13G099800' => 'ghi', 'Gohir.D01G129200' => 'ghi', 'Gohir.D03G146500' => 'ghi', 'Gohir.D05G045600' => 'ghi', 'Gohir.D07G023100' => 'ghi', 'Gohir.D11G246600' => 'ghi', 'Gohir.D13G103200' => 'ghi', 'Gorai.001G023800' => 'gra', 'Gorai.003G153900' => 'gra', 'Gorai.007G262500' => 'gra', 'Gorai.009G047000' => 'gra', 'Gorai.013G115700' => 'gra', 'GSVIVG01025467001' => 'vvi', 'GSVIVG01033408001' => 'vvi', 'GSVIVG01035342001' => 'vvi', 'HanXRQChr01g0021411' => 'han', 'HanXRQChr01g0024751' => 'han', 'HanXRQChr02g0054561' => 'han', 'HanXRQChr03g0078821' => 'han', 'HanXRQChr13g0410641' => 'han', 'HanXRQChr17g0556881' => 'han', 'Haze_05180' => 'cav', 'Haze_18219' => 'cav', 'Haze_18220' => 'cav', 'Haze_19425' => 'cav', 'Haze_22942' => 'cav', 'Hma1.2p1_0589F.1_g184900' => 'hma', 'Hma1.2p1_1266F.1_g271400' => 'hma', 'HPP92_006480' => 'vpl', 'HPP92_010133' => 'vpl', 'HPP92_015920' => 'vpl', 'HPP92_015935' => 'vpl', 'Hund03362' => 'sun', 'Hund19477' => 'sun', 'Hund20139' => 'sun', 'Lalb_Chr08g0245121' => 'lal', 'Lalb_Chr11g0063081' => 'lal', 'Lalb_Chr11g0063091' => 'lal', 'Lalb_Chr14g0364541' => 'lal', 'Lalb_Chr14g0367871' => 'lal', 'Lalb_Chr22g0355981' => 'lal', 'Lalb_Chr22g0359121' => 'lal', 'Lj1A522G59' => 'lonja', 'Lj1A523G15' => 'lonja', 'Lj1C1136T11' => 'lonja', 'Lj1C1153G5' => 'lonja', 'Lj1g0008729' => 'lja', 'Lj1g0027715' => 'lja', 'Lj4g0016461' => 'lja', 'Lj7A282T45' => 'lonja', 'Lsat_1_v5_gn_1_59781' => 'lsa', 'Lsat_1_v5_gn_1_68841' => 'lsa', 'Lsat_1_v5_gn_5_44541' => 'lsa', 'Lsat_1_v5_gn_6_37381' => 'lsa', 'Manes.03G046400' => 'mes', 'Manes.03G087603' => 'mes', 'Manes.08G144800' => 'mes', 'Manes.09G140800' => 'mes', 'Manes.15G109000' => 'mes', 'Manes.16G077700' => 'mes', 'Mapoly0028s0111' => 'mpo', 'MapolyY_B0003' => 'mpo', 'MBI01_g13089_MAGBIO' => 'mbi', 'MBI01_g16590_MAGBIO' => 'mbi', 'MBI04_g38352_MAGBIO' => 'mbi', 'MBI06_g30437_MAGBIO' => 'mbi', 'MBI06_g47202_MAGBIO' => 'mbi', 'MBI07_g10932_MAGBIO' => 'mbi', 'MD03G1003700' => 'mdo', 'MD05G1241700' => 'mdo', 'MD08G1073700' => 'mdo', 'MD10G1223600' => 'mdo', 'MD11G1003600' => 'mdo', 'MD12G1004100' => 'mdo', 'MD12G1004300' => 'mdo', 'MD14G1003000' => 'mdo', 'Medtr1g016800' => 'mtr', 'Medtr7g085680' => 'mtr', 'Medtr8g070650' => 'mtr', 'MELO3C010764.2' => 'cme', 'MELO3C015579.2' => 'cme', 'MELO3C016856.2' => 'cme', 'MELO3C026883.2' => 'cme', 'Migut.A00156' => 'egut', 'Migut.E01554' => 'egut', 'Migut.N00555' => 'egut', 'MSTRG.11673' => 'ama', 'MSTRG.14044' => 'ama', 'MSTRG.18024' => 'ama', 'MSTRG.25937' => 'ama', 'Nitab4.5_0000359g0180' => 'nta', 'Nitab4.5_0000551g0150' => 'nta', 'Nitab4.5_0000626g0020' => 'nta', 'Nitab4.5_0006311g0010' => 'nta', 'Nitab4.5_0011070g0020' => 'nta', 'Nitab4.5_0026702g0010' => 'nta', 'Nn2g12309' => 'nnu', 'Nn2g15858' => 'nnu', 'Nn3g21962' => 'nnu', 'Nn4g26653' => 'nnu', 'Nn6g35391' => 'nnu', 'Nn7g35863' => 'nnu', 'Oeu023701.1' => 'oeu', 'Oeu023951.1' => 'oeu', 'Oeu029403.1' => 'oeu', 'Oeu036352.1' => 'oeu', 'Oeu057698.1' => 'oeu', 'Os01g0680700' => 'osa', 'Os05g0541700' => 'osa', 'Os05g0556600' => 'osa', 'Peaxi162Scf00436g00120' => 'pax', 'Peaxi162Scf00463g00018' => 'pax', 'Peaxi162Scf00705g00312' => 'pax', 'PGR042G0242' => 'pgr', 'PGR044G0779' => 'pgr', 'PGR119G1054' => 'pgr', 'PGSC0003DMG400013825' => 'stu', 'PGSC0003DMG400032167' => 'stu', 'Phvul.001G111300' => 'pvu', 'Phvul.003G274400' => 'pvu', 'Phvul.009G075900' => 'pvu', 'Potri.001G004000' => 'ptr', 'Potri.001G073400' => 'ptr', 'Potri.003G157500' => 'ptr', 'Potri.003G221000' => 'ptr', 'Potri.006G233100' => 'ptr', 'Potri.013G057600' => 'ptr', 'Potri.018G059200' => 'ptr', 'Potri.019G035300' => 'ptr', 'Pp3c17_14270' => 'ppa', 'Pp3c1_33320' => 'ppa', 'Pp3c2_2700' => 'ppa', 'Pp3c5_17000' => 'ppa', 'Pp3c6_15840' => 'ppa', 'Prupe.1G415100' => 'ppe', 'Prupe.4G121700' => 'ppe', 'Prupe.6G003400' => 'ppe', 'Prupe.7G004700' => 'ppe', 'Psat4g112440' => 'psa', 'Psat6g018840' => 'psa', 'Psat6g151920' => 'psa', 'PSO063G1120' => 'pso', 'PSO339G3326' => 'pso', 'PSO384G0980' => 'pso', 'PSO832G1989' => 'pso', 'QL01p009060' => 'qlo', 'QL02p001657' => 'qlo', 'QL07p018365' => 'qlo', 'QL11p010646' => 'qlo', 'RcHm_v2.0_Chr5g0022171' => 'rch', 'RcHm_v2.0_Chr5g0083771' => 'rch', 'RcHm_v2.0_Chr6g0310471' => 'rch', 'Rhsim09G0033500' => 'rsi', 'Rhsim11G0047300' => 'rsi', 'Sabra01G0002700' => 'sbr', 'Sabra03G0114200' => 'sbr', 'Sabra03G0164500' => 'sbr', 'Sabra06G0181600' => 'sbr', 'Sabra06G0181700' => 'sbr', 'Sabra13G0051300' => 'sbr', 'Sabra18G0050200' => 'sbr', 'Sabra19G0043800' => 'sbr', 'Sabra19G0047100' => 'sbr', 'SalBow1G0862' => 'sbo', 'SalBow4G2002' => 'sbo', 'Sc05g0005600' => 'sci', 'Sc09g0009650' => 'sci', 'Sc13g0002660' => 'sci', 'Sed0000349' => 'sed', 'Sed0009703' => 'sed', 'Sed0010726' => 'sed', 'Sed0018755' => 'sed', 'Sed0022728' => 'sed', 'Sed0028161' => 'sed', 'SEGI_05304' => 'sgi', 'SEGI_05342' => 'sgi', 'SEGI_05736' => 'sgi', 'SEGI_06078' => 'sgi', 'SEGI_11986' => 'sgi', 'SEGI_15756' => 'sgi', 'SEGI_34399' => 'sgi', 'SEGI_40027' => 'sgi', 'SEGI_40545' => 'sgi', 'SGA_v2.0_scaffold163G38039' => 'sas', 'SGA_v2.0_scaffold169G38680' => 'sas', 'SGA_v2.0_scaffold6G03307' => 'sas', 'SMO118G0421' => 'smo', 'Solyc01g005570.4' => 'sly', 'Solyc01g005580.2' => 'sly', 'Solyc08g065840.3' => 'sly', 'Sopen01g001600' => 'spe', 'Sopen01g001610' => 'spe', 'Sopen08g019540' => 'spe', 'Sp1g41020' => 'spa', 'Sp2g09410' => 'spa', 'Sp3g02850' => 'spa', 'TAR084G0004' => 'tar', 'TAR369G0034' => 'tar', 'TAR374G0078' => 'tar', 'TAR374G0322' => 'tar', 'TAR383G0608' => 'tar', 'TAR623G0230' => 'tar', 'TAR624G0555' => 'tar', 'TAR625G0451' => 'tar', 'TAR626G0864' => 'tar', 'TAR633G0754' => 'tar', 'THA.LOC104799179' => 'tha', 'THA.LOC104806233' => 'tha', 'THA.LOC104810326' => 'tha', 'THA.LOC104811967' => 'tha', 'THA.LOC104812927' => 'tha', 'Thecc.02G000400' => 'tca', 'Thecc.05G250200' => 'tca', 'Thecc.09G050800' => 'tca', 'Thecc.09G199800' => 'tca', 'Thhalv10000929m.g' => 'esa', 'Thhalv10011785m.g' => 'esa', 'Thhalv10025632m.g' => 'esa', 'TPR.G13008' => 'tpr', 'TPR.G19828' => 'tpr', 'TPR.G5908' => 'tpr', 'TWI32G0013' => 'twi', 'TWI34G0225' => 'twi', 'TWI34G0691' => 'twi', 'TWI34G0951' => 'twi', 'TWI38G0460' => 'twi', 'TWI60G0252' => 'twi', 'TWI60G1374' => 'twi', 'TWI63G1359' => 'twi', 'TWI63G1836' => 'twi', 'unitig_52.g17517' => 'ugi', 'vmacro00167' => 'vma', 'vmacro12565' => 'vma', 'vmacro12600' => 'vma', 'VMungo0251G1051' => 'vmu', 'VMungo0647G2216' => 'vmu', 'VMungo1309G0835' => 'vmu', 'VMungo1383G3028' => 'vmu', 'Zm00001eb043840' => 'zma', 'Zm00001eb044570' => 'zma', 'Zm00001eb061640' => 'zma', 'Zm00001eb065830' => 'zma', 'Zm00001eb112230' => 'zma', 'Zm00001eb142900' => 'zma', 'Zm00001eb156700' => 'zma', 'Zm00001eb183550' => 'zma', 'Zm00001eb212530' => 'zma', 'Zm00001eb285870' => 'zma', 'Zm00001eb294400' => 'zma', 'Zm00001eb295380' => 'zma', 'Zm00001eb342360' => 'zma', 'Zm00001eb343240' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001435', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001435' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001435', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001435' ) ), 'genes' => array( 'A01p12000' => 'bna', 'A05p17510' => 'bna', 'A05p43510' => 'bna', 'A06p00240' => 'bna', 'A08p00700' => 'bna', 'Aa31LG10G1140' => 'aar', 'Aa31LG5G14460' => 'aar', 'Aa31LG9G8560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2730' => 'aag', 'Actinidia06912' => 'ach', 'Actinidia22081' => 'ach', 'Actinidia30299' => 'ach', 'Actinidia30551' => 'ach', 'Ah.08g212240' => 'amhyb', 'Ah.11g044540' => 'amhyb', 'Ah.13g075430' => 'amhyb', 'Ah.15g091840' => 'amhyb', 'AL1G63390' => 'aly', 'AL3G13770' => 'aly', 'AL7G33610' => 'aly', 'Aqoxy199s001' => 'aox', 'Aqoxy199s002' => 'aox', 'Aqoxy1G00474' => 'aox', 'Aqoxy2G00450' => 'aox', 'Aqoxy7G01333' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B43C0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0S58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3WVNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7Z6ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP2KRU' => 'arhy', 'AT1G55340' => 'ath', 'AT3G03880' => 'ath', 'AT4G20300' => 'ath', 'ATR0219G009' => 'atr', 'ATR0737G061' => 'atr', 'ATR0737G062' => 'atr', 'ATR1125G091' => 'atr', 'Atru.chr2.1394' => 'acertr', 'Atru.chr3.2105' => 'acertr', 'Atru.chr7.2022' => 'acertr', 'Atru.chr7.2023' => 'acertr', 'AUR62009202' => 'cqu', 'AUR62032047' => 'cqu', 'AUR62032702' => 'cqu', 'AUR62040199' => 'cqu', 'AUR62040987' => 'cqu', 'AUR62042965' => 'cqu', 'AUR62043050' => 'cqu', 'BcaB02g10825' => 'bca', 'BcaB03g11667' => 'bca', 'BcaB04g16963' => 'bca', 'BcaC01g01516' => 'bca', 'BcaC05g29900' => 'bca', 'BcaC05g30246' => 'bca', 'BcaC05g30289' => 'bca', 'BcaC08g43617' => 'bca', 'BcaC08g44194' => 'bca', 'BcaC09g51323' => 'bca', 'BcaNung03719' => 'bca', 'BolC1t03504H' => 'bol', 'BolC3t20569H' => 'bol', 'BolC3t21578H' => 'bol', 'BolC5t34972H' => 'bol', 'BolC6t36108H' => 'bol', 'BolC6t36792H' => 'bol', 'BraA01t01142Z' => 'bra', 'BraA05t20645Z' => 'bra', 'BraA05t23091Z' => 'bra', 'BraA06t23240Z' => 'bra', 'BraA08t32127Z' => 'bra', 'C01p35460' => 'bna', 'C03p82870' => 'bna', 'C03p92640' => 'bna', 'C06p10320' => 'bna', 'C06p15990' => 'bna', 'CAN.G1327.8' => 'can', 'CAN.G1834.8' => 'can', 'CAN.G1834.9' => 'can', 'CANSAT11G2351' => 'cansat', 'CANSAT25G0463' => 'cansat', 'CANSAT35G0446' => 'cansat', 'CARHR045000' => 'chi', 'CARHR078000' => 'chi', 'CARHR178340' => 'chi', 'CARHR227120' => 'chi', 'Carub.0001s4385' => 'cru', 'Carub.0003s0307' => 'cru', 'Carub.0007s2088' => 'cru', 'Ca_08270_v3' => 'car', 'Ca_13182_v3' => 'car', 'Ca_22536_v3' => 'car', 'Cc01_g00060' => 'ccan', 'Cc06_g23040' => 'ccan', 'Cc08_g10310' => 'ccan', 'Cc09_g04520' => 'ccan', 'CDE02G3633' => 'cde', 'CDE02G3839' => 'cde', 'CDE05G2098' => 'cde', 'CDE09G1322' => 'cde', 'CDE10G0959' => 'cde', 'Cfa009563' => 'cfa', 'Cfa016447' => 'cfa', 'Cfa017930' => 'cfa', 'Ciclev10009045m.g' => 'ccl', 'Ciclev10015606m.g' => 'ccl', 'Ciclev10016677m.g' => 'ccl', 'Ciclev10022079m.g' => 'ccl', 'CiPaw.09G141100' => 'cil', 'CiPaw.10G001200' => 'cil', 'CiPaw.10G108800' => 'cil', 'CiPaw.13G177000' => 'cil', 'CiPaw.14G136800' => 'cil', 'CiPaw.15G042000' => 'cil', 'ClCG03G014530' => 'cla', 'ClCG05G017720' => 'cla', 'ClCG08G016910' => 'cla', 'ClCG10G013410' => 'cla', 'COL.COLO4_05793' => 'col', 'COL.COLO4_21025' => 'col', 'COL.COLO4_25013' => 'col', 'COL.COLO4_36082' => 'col', 'Cpa.g.sc119.41' => 'cpa', 'Cpa.g.sc51.129' => 'cpa', 'Cpa.g.sc7.189' => 'cpa', 'CsaV3_1G041660' => 'csa', 'CsaV3_2G025700' => 'csa', 'CsaV3_3G043230' => 'csa', 'CsaV3_4G035460' => 'csa', 'CSS0004523' => 'camsi', 'CSS0005800' => 'camsi', 'CSS0040277' => 'camsi', 'CSS0047607' => 'camsi', 'DCAR_000780' => 'dca', 'DCAR_001252' => 'dca', 'DCAR_001977' => 'dca', 'DCAR_004366' => 'dca', 'DCAR_013684' => 'dca', 'Dinv13470' => 'din', 'Dinv13471' => 'din', 'Dinv14576' => 'din', 'Dinv23420' => 'din', 'Dinv27963' => 'din', 'Dinv37020' => 'din', 'Duzib106G0585' => 'dzi', 'Duzib128G1230' => 'dzi', 'Duzib150G0044' => 'dzi', 'Duzib168G0652' => 'dzi', 'Duzib168G1233' => 'dzi', 'Duzib177G0166' => 'dzi', 'Duzib187G1149' => 'dzi', 'Duzib248G0140' => 'dzi', 'ECA233G4767' => 'eca', 'ECA240G2387' => 'eca', 'ECA248G2241' => 'eca', 'ECA248G3436' => 'eca', 'EL10Ac3g06826' => 'bvu', 'EL10Ac7g17301' => 'bvu', 'Eucgr.A02101' => 'egr', 'Eucgr.C03003' => 'egr', 'Eucgr.J01767' => 'egr', 'FAN11G0616' => 'fan', 'FAN11G2869' => 'fan', 'FAN15G3292' => 'fan', 'FAN16G1601' => 'fan', 'FAN20G1683' => 'fan', 'FAN21G0103' => 'fan', 'FAN21G0155' => 'fan', 'FAN24G1394' => 'fan', 'FAN25G1540' => 'fan', 'FAN25G3141' => 'fan', 'FAN27G2292' => 'fan', 'FvH4_2g32200' => 'fve', 'FvH4_3g13430' => 'fve', 'FvH4_3g45580' => 'fve', 'Glyma.04G050000' => 'gma', 'Glyma.06G050600' => 'gma', 'Glyma.14G092600' => 'gma', 'Glyma.16G040500' => 'gma', 'Glyma.16G094400' => 'gma', 'Glyma.17G230900' => 'gma', 'Glyma.19G112600' => 'gma', 'Gohir.A03G022200' => 'ghi', 'Gohir.A05G044000' => 'ghi', 'Gohir.A07G022148' => 'ghi', 'Gohir.A11G235700' => 'ghi', 'Gohir.A13G099700' => 'ghi', 'Gohir.A13G099800' => 'ghi', 'Gohir.D01G129200' => 'ghi', 'Gohir.D03G146500' => 'ghi', 'Gohir.D05G045600' => 'ghi', 'Gohir.D07G023100' => 'ghi', 'Gohir.D11G246600' => 'ghi', 'Gohir.D13G103200' => 'ghi', 'Gorai.001G023800' => 'gra', 'Gorai.003G153900' => 'gra', 'Gorai.007G262500' => 'gra', 'Gorai.009G047000' => 'gra', 'Gorai.013G115700' => 'gra', 'GSVIVG01025467001' => 'vvi', 'GSVIVG01033408001' => 'vvi', 'GSVIVG01035342001' => 'vvi', 'HanXRQChr01g0021411' => 'han', 'HanXRQChr01g0024751' => 'han', 'HanXRQChr02g0054561' => 'han', 'HanXRQChr03g0078821' => 'han', 'HanXRQChr13g0410641' => 'han', 'HanXRQChr17g0556881' => 'han', 'Haze_05180' => 'cav', 'Haze_18219' => 'cav', 'Haze_18220' => 'cav', 'Haze_19425' => 'cav', 'Haze_22942' => 'cav', 'Hma1.2p1_0589F.1_g184900' => 'hma', 'Hma1.2p1_1266F.1_g271400' => 'hma', 'HPP92_006480' => 'vpl', 'HPP92_010133' => 'vpl', 'HPP92_015920' => 'vpl', 'HPP92_015935' => 'vpl', 'Hund03362' => 'sun', 'Hund19477' => 'sun', 'Hund20139' => 'sun', 'Lalb_Chr08g0245121' => 'lal', 'Lalb_Chr11g0063081' => 'lal', 'Lalb_Chr11g0063091' => 'lal', 'Lalb_Chr14g0364541' => 'lal', 'Lalb_Chr14g0367871' => 'lal', 'Lalb_Chr22g0355981' => 'lal', 'Lalb_Chr22g0359121' => 'lal', 'Lj1A522G59' => 'lonja', 'Lj1A523G15' => 'lonja', 'Lj1C1136T11' => 'lonja', 'Lj1C1153G5' => 'lonja', 'Lj1g0008729' => 'lja', 'Lj1g0027715' => 'lja', 'Lj4g0016461' => 'lja', 'Lj7A282T45' => 'lonja', 'Lsat_1_v5_gn_1_59781' => 'lsa', 'Lsat_1_v5_gn_1_68841' => 'lsa', 'Lsat_1_v5_gn_5_44541' => 'lsa', 'Lsat_1_v5_gn_6_37381' => 'lsa', 'Manes.03G046400' => 'mes', 'Manes.03G087603' => 'mes', 'Manes.08G144800' => 'mes', 'Manes.09G140800' => 'mes', 'Manes.15G109000' => 'mes', 'Manes.16G077700' => 'mes', 'Mapoly0028s0111' => 'mpo', 'MapolyY_B0003' => 'mpo', 'MBI01_g13089_MAGBIO' => 'mbi', 'MBI01_g16590_MAGBIO' => 'mbi', 'MBI04_g38352_MAGBIO' => 'mbi', 'MBI06_g30437_MAGBIO' => 'mbi', 'MBI06_g47202_MAGBIO' => 'mbi', 'MBI07_g10932_MAGBIO' => 'mbi', 'MD03G1003700' => 'mdo', 'MD05G1241700' => 'mdo', 'MD08G1073700' => 'mdo', 'MD10G1223600' => 'mdo', 'MD11G1003600' => 'mdo', 'MD12G1004100' => 'mdo', 'MD12G1004300' => 'mdo', 'MD14G1003000' => 'mdo', 'Medtr1g016800' => 'mtr', 'Medtr7g085680' => 'mtr', 'Medtr8g070650' => 'mtr', 'MELO3C010764.2' => 'cme', 'MELO3C015579.2' => 'cme', 'MELO3C016856.2' => 'cme', 'MELO3C026883.2' => 'cme', 'Migut.A00156' => 'egut', 'Migut.E01554' => 'egut', 'Migut.N00555' => 'egut', 'MSTRG.11673' => 'ama', 'MSTRG.14044' => 'ama', 'MSTRG.18024' => 'ama', 'MSTRG.25937' => 'ama', 'Nitab4.5_0000359g0180' => 'nta', 'Nitab4.5_0000551g0150' => 'nta', 'Nitab4.5_0000626g0020' => 'nta', 'Nitab4.5_0006311g0010' => 'nta', 'Nitab4.5_0011070g0020' => 'nta', 'Nitab4.5_0026702g0010' => 'nta', 'Nn2g12309' => 'nnu', 'Nn2g15858' => 'nnu', 'Nn3g21962' => 'nnu', 'Nn4g26653' => 'nnu', 'Nn6g35391' => 'nnu', 'Nn7g35863' => 'nnu', 'Oeu023701.1' => 'oeu', 'Oeu023951.1' => 'oeu', 'Oeu029403.1' => 'oeu', 'Oeu036352.1' => 'oeu', 'Oeu057698.1' => 'oeu', 'Os01g0680700' => 'osa', 'Os05g0541700' => 'osa', 'Os05g0556600' => 'osa', 'Peaxi162Scf00436g00120' => 'pax', 'Peaxi162Scf00463g00018' => 'pax', 'Peaxi162Scf00705g00312' => 'pax', 'PGR042G0242' => 'pgr', 'PGR044G0779' => 'pgr', 'PGR119G1054' => 'pgr', 'PGSC0003DMG400013825' => 'stu', 'PGSC0003DMG400032167' => 'stu', 'Phvul.001G111300' => 'pvu', 'Phvul.003G274400' => 'pvu', 'Phvul.009G075900' => 'pvu', 'Potri.001G004000' => 'ptr', 'Potri.001G073400' => 'ptr', 'Potri.003G157500' => 'ptr', 'Potri.003G221000' => 'ptr', 'Potri.006G233100' => 'ptr', 'Potri.013G057600' => 'ptr', 'Potri.018G059200' => 'ptr', 'Potri.019G035300' => 'ptr', 'Pp3c17_14270' => 'ppa', 'Pp3c1_33320' => 'ppa', 'Pp3c2_2700' => 'ppa', 'Pp3c5_17000' => 'ppa', 'Pp3c6_15840' => 'ppa', 'Prupe.1G415100' => 'ppe', 'Prupe.4G121700' => 'ppe', 'Prupe.6G003400' => 'ppe', 'Prupe.7G004700' => 'ppe', 'Psat4g112440' => 'psa', 'Psat6g018840' => 'psa', 'Psat6g151920' => 'psa', 'PSO063G1120' => 'pso', 'PSO339G3326' => 'pso', 'PSO384G0980' => 'pso', 'PSO832G1989' => 'pso', 'QL01p009060' => 'qlo', 'QL02p001657' => 'qlo', 'QL07p018365' => 'qlo', 'QL11p010646' => 'qlo', 'RcHm_v2.0_Chr5g0022171' => 'rch', 'RcHm_v2.0_Chr5g0083771' => 'rch', 'RcHm_v2.0_Chr6g0310471' => 'rch', 'Rhsim09G0033500' => 'rsi', 'Rhsim11G0047300' => 'rsi', 'Sabra01G0002700' => 'sbr', 'Sabra03G0114200' => 'sbr', 'Sabra03G0164500' => 'sbr', 'Sabra06G0181600' => 'sbr', 'Sabra06G0181700' => 'sbr', 'Sabra13G0051300' => 'sbr', 'Sabra18G0050200' => 'sbr', 'Sabra19G0043800' => 'sbr', 'Sabra19G0047100' => 'sbr', 'SalBow1G0862' => 'sbo', 'SalBow4G2002' => 'sbo', 'Sc05g0005600' => 'sci', 'Sc09g0009650' => 'sci', 'Sc13g0002660' => 'sci', 'Sed0000349' => 'sed', 'Sed0009703' => 'sed', 'Sed0010726' => 'sed', 'Sed0018755' => 'sed', 'Sed0022728' => 'sed', 'Sed0028161' => 'sed', 'SEGI_05304' => 'sgi', 'SEGI_05342' => 'sgi', 'SEGI_05736' => 'sgi', 'SEGI_06078' => 'sgi', 'SEGI_11986' => 'sgi', 'SEGI_15756' => 'sgi', 'SEGI_34399' => 'sgi', 'SEGI_40027' => 'sgi', 'SEGI_40545' => 'sgi', 'SGA_v2.0_scaffold163G38039' => 'sas', 'SGA_v2.0_scaffold169G38680' => 'sas', 'SGA_v2.0_scaffold6G03307' => 'sas', 'SMO118G0421' => 'smo', 'Solyc01g005570.4' => 'sly', 'Solyc01g005580.2' => 'sly', 'Solyc08g065840.3' => 'sly', 'Sopen01g001600' => 'spe', 'Sopen01g001610' => 'spe', 'Sopen08g019540' => 'spe', 'Sp1g41020' => 'spa', 'Sp2g09410' => 'spa', 'Sp3g02850' => 'spa', 'TAR084G0004' => 'tar', 'TAR369G0034' => 'tar', 'TAR374G0078' => 'tar', 'TAR374G0322' => 'tar', 'TAR383G0608' => 'tar', 'TAR623G0230' => 'tar', 'TAR624G0555' => 'tar', 'TAR625G0451' => 'tar', 'TAR626G0864' => 'tar', 'TAR633G0754' => 'tar', 'THA.LOC104799179' => 'tha', 'THA.LOC104806233' => 'tha', 'THA.LOC104810326' => 'tha', 'THA.LOC104811967' => 'tha', 'THA.LOC104812927' => 'tha', 'Thecc.02G000400' => 'tca', 'Thecc.05G250200' => 'tca', 'Thecc.09G050800' => 'tca', 'Thecc.09G199800' => 'tca', 'Thhalv10000929m.g' => 'esa', 'Thhalv10011785m.g' => 'esa', 'Thhalv10025632m.g' => 'esa', 'TPR.G13008' => 'tpr', 'TPR.G19828' => 'tpr', 'TPR.G5908' => 'tpr', 'TWI32G0013' => 'twi', 'TWI34G0225' => 'twi', 'TWI34G0691' => 'twi', 'TWI34G0951' => 'twi', 'TWI38G0460' => 'twi', 'TWI60G0252' => 'twi', 'TWI60G1374' => 'twi', 'TWI63G1359' => 'twi', 'TWI63G1836' => 'twi', 'unitig_52.g17517' => 'ugi', 'vmacro00167' => 'vma', 'vmacro12565' => 'vma', 'vmacro12600' => 'vma', 'VMungo0251G1051' => 'vmu', 'VMungo0647G2216' => 'vmu', 'VMungo1309G0835' => 'vmu', 'VMungo1383G3028' => 'vmu', 'Zm00001eb043840' => 'zma', 'Zm00001eb044570' => 'zma', 'Zm00001eb061640' => 'zma', 'Zm00001eb065830' => 'zma', 'Zm00001eb112230' => 'zma', 'Zm00001eb142900' => 'zma', 'Zm00001eb156700' => 'zma', 'Zm00001eb183550' => 'zma', 'Zm00001eb212530' => 'zma', 'Zm00001eb285870' => 'zma', 'Zm00001eb294400' => 'zma', 'Zm00001eb295380' => 'zma', 'Zm00001eb342360' => 'zma', 'Zm00001eb343240' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001435' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001435' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001435' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001435' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001435', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12000' => 'bna', 'A05p17510' => 'bna', 'A05p43510' => 'bna', 'A06p00240' => 'bna', 'A08p00700' => 'bna', 'Aa31LG10G1140' => 'aar', 'Aa31LG5G14460' => 'aar', 'Aa31LG9G8560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2730' => 'aag', 'Actinidia06912' => 'ach', 'Actinidia22081' => 'ach', 'Actinidia30299' => 'ach', 'Actinidia30551' => 'ach', 'Ah.08g212240' => 'amhyb', 'Ah.11g044540' => 'amhyb', 'Ah.13g075430' => 'amhyb', 'Ah.15g091840' => 'amhyb', 'AL1G63390' => 'aly', 'AL3G13770' => 'aly', 'AL7G33610' => 'aly', 'Aqoxy199s001' => 'aox', 'Aqoxy199s002' => 'aox', 'Aqoxy1G00474' => 'aox', 'Aqoxy2G00450' => 'aox', 'Aqoxy7G01333' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B43C0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0S58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3WVNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7Z6ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP2KRU' => 'arhy', 'AT1G55340' => 'ath', 'AT3G03880' => 'ath', 'AT4G20300' => 'ath', 'ATR0219G009' => 'atr', 'ATR0737G061' => 'atr', 'ATR0737G062' => 'atr', 'ATR1125G091' => 'atr', 'Atru.chr2.1394' => 'acertr', 'Atru.chr3.2105' => 'acertr', 'Atru.chr7.2022' => 'acertr', 'Atru.chr7.2023' => 'acertr', 'AUR62009202' => 'cqu', 'AUR62032047' => 'cqu', 'AUR62032702' => 'cqu', 'AUR62040199' => 'cqu', 'AUR62040987' => 'cqu', 'AUR62042965' => 'cqu', 'AUR62043050' => 'cqu', 'BcaB02g10825' => 'bca', 'BcaB03g11667' => 'bca', 'BcaB04g16963' => 'bca', 'BcaC01g01516' => 'bca', 'BcaC05g29900' => 'bca', 'BcaC05g30246' => 'bca', 'BcaC05g30289' => 'bca', 'BcaC08g43617' => 'bca', 'BcaC08g44194' => 'bca', 'BcaC09g51323' => 'bca', 'BcaNung03719' => 'bca', 'BolC1t03504H' => 'bol', 'BolC3t20569H' => 'bol', 'BolC3t21578H' => 'bol', 'BolC5t34972H' => 'bol', 'BolC6t36108H' => 'bol', 'BolC6t36792H' => 'bol', 'BraA01t01142Z' => 'bra', 'BraA05t20645Z' => 'bra', 'BraA05t23091Z' => 'bra', 'BraA06t23240Z' => 'bra', 'BraA08t32127Z' => 'bra', 'C01p35460' => 'bna', 'C03p82870' => 'bna', 'C03p92640' => 'bna', 'C06p10320' => 'bna', 'C06p15990' => 'bna', 'CAN.G1327.8' => 'can', 'CAN.G1834.8' => 'can', 'CAN.G1834.9' => 'can', 'CANSAT11G2351' => 'cansat', 'CANSAT25G0463' => 'cansat', 'CANSAT35G0446' => 'cansat', 'CARHR045000' => 'chi', 'CARHR078000' => 'chi', 'CARHR178340' => 'chi', 'CARHR227120' => 'chi', 'Carub.0001s4385' => 'cru', 'Carub.0003s0307' => 'cru', 'Carub.0007s2088' => 'cru', 'Ca_08270_v3' => 'car', 'Ca_13182_v3' => 'car', 'Ca_22536_v3' => 'car', 'Cc01_g00060' => 'ccan', 'Cc06_g23040' => 'ccan', 'Cc08_g10310' => 'ccan', 'Cc09_g04520' => 'ccan', 'CDE02G3633' => 'cde', 'CDE02G3839' => 'cde', 'CDE05G2098' => 'cde', 'CDE09G1322' => 'cde', 'CDE10G0959' => 'cde', 'Cfa009563' => 'cfa', 'Cfa016447' => 'cfa', 'Cfa017930' => 'cfa', 'Ciclev10009045m.g' => 'ccl', 'Ciclev10015606m.g' => 'ccl', 'Ciclev10016677m.g' => 'ccl', 'Ciclev10022079m.g' => 'ccl', 'CiPaw.09G141100' => 'cil', 'CiPaw.10G001200' => 'cil', 'CiPaw.10G108800' => 'cil', 'CiPaw.13G177000' => 'cil', 'CiPaw.14G136800' => 'cil', 'CiPaw.15G042000' => 'cil', 'ClCG03G014530' => 'cla', 'ClCG05G017720' => 'cla', 'ClCG08G016910' => 'cla', 'ClCG10G013410' => 'cla', 'COL.COLO4_05793' => 'col', 'COL.COLO4_21025' => 'col', 'COL.COLO4_25013' => 'col', 'COL.COLO4_36082' => 'col', 'Cpa.g.sc119.41' => 'cpa', 'Cpa.g.sc51.129' => 'cpa', 'Cpa.g.sc7.189' => 'cpa', 'CsaV3_1G041660' => 'csa', 'CsaV3_2G025700' => 'csa', 'CsaV3_3G043230' => 'csa', 'CsaV3_4G035460' => 'csa', 'CSS0004523' => 'camsi', 'CSS0005800' => 'camsi', 'CSS0040277' => 'camsi', 'CSS0047607' => 'camsi', 'DCAR_000780' => 'dca', 'DCAR_001252' => 'dca', 'DCAR_001977' => 'dca', 'DCAR_004366' => 'dca', 'DCAR_013684' => 'dca', 'Dinv13470' => 'din', 'Dinv13471' => 'din', 'Dinv14576' => 'din', 'Dinv23420' => 'din', 'Dinv27963' => 'din', 'Dinv37020' => 'din', 'Duzib106G0585' => 'dzi', 'Duzib128G1230' => 'dzi', 'Duzib150G0044' => 'dzi', 'Duzib168G0652' => 'dzi', 'Duzib168G1233' => 'dzi', 'Duzib177G0166' => 'dzi', 'Duzib187G1149' => 'dzi', 'Duzib248G0140' => 'dzi', 'ECA233G4767' => 'eca', 'ECA240G2387' => 'eca', 'ECA248G2241' => 'eca', 'ECA248G3436' => 'eca', 'EL10Ac3g06826' => 'bvu', 'EL10Ac7g17301' => 'bvu', 'Eucgr.A02101' => 'egr', 'Eucgr.C03003' => 'egr', 'Eucgr.J01767' => 'egr', 'FAN11G0616' => 'fan', 'FAN11G2869' => 'fan', 'FAN15G3292' => 'fan', 'FAN16G1601' => 'fan', 'FAN20G1683' => 'fan', 'FAN21G0103' => 'fan', 'FAN21G0155' => 'fan', 'FAN24G1394' => 'fan', 'FAN25G1540' => 'fan', 'FAN25G3141' => 'fan', 'FAN27G2292' => 'fan', 'FvH4_2g32200' => 'fve', 'FvH4_3g13430' => 'fve', 'FvH4_3g45580' => 'fve', 'Glyma.04G050000' => 'gma', 'Glyma.06G050600' => 'gma', 'Glyma.14G092600' => 'gma', 'Glyma.16G040500' => 'gma', 'Glyma.16G094400' => 'gma', 'Glyma.17G230900' => 'gma', 'Glyma.19G112600' => 'gma', 'Gohir.A03G022200' => 'ghi', 'Gohir.A05G044000' => 'ghi', 'Gohir.A07G022148' => 'ghi', 'Gohir.A11G235700' => 'ghi', 'Gohir.A13G099700' => 'ghi', 'Gohir.A13G099800' => 'ghi', 'Gohir.D01G129200' => 'ghi', 'Gohir.D03G146500' => 'ghi', 'Gohir.D05G045600' => 'ghi', 'Gohir.D07G023100' => 'ghi', 'Gohir.D11G246600' => 'ghi', 'Gohir.D13G103200' => 'ghi', 'Gorai.001G023800' => 'gra', 'Gorai.003G153900' => 'gra', 'Gorai.007G262500' => 'gra', 'Gorai.009G047000' => 'gra', 'Gorai.013G115700' => 'gra', 'GSVIVG01025467001' => 'vvi', 'GSVIVG01033408001' => 'vvi', 'GSVIVG01035342001' => 'vvi', 'HanXRQChr01g0021411' => 'han', 'HanXRQChr01g0024751' => 'han', 'HanXRQChr02g0054561' => 'han', 'HanXRQChr03g0078821' => 'han', 'HanXRQChr13g0410641' => 'han', 'HanXRQChr17g0556881' => 'han', 'Haze_05180' => 'cav', 'Haze_18219' => 'cav', 'Haze_18220' => 'cav', 'Haze_19425' => 'cav', 'Haze_22942' => 'cav', 'Hma1.2p1_0589F.1_g184900' => 'hma', 'Hma1.2p1_1266F.1_g271400' => 'hma', 'HPP92_006480' => 'vpl', 'HPP92_010133' => 'vpl', 'HPP92_015920' => 'vpl', 'HPP92_015935' => 'vpl', 'Hund03362' => 'sun', 'Hund19477' => 'sun', 'Hund20139' => 'sun', 'Lalb_Chr08g0245121' => 'lal', 'Lalb_Chr11g0063081' => 'lal', 'Lalb_Chr11g0063091' => 'lal', 'Lalb_Chr14g0364541' => 'lal', 'Lalb_Chr14g0367871' => 'lal', 'Lalb_Chr22g0355981' => 'lal', 'Lalb_Chr22g0359121' => 'lal', 'Lj1A522G59' => 'lonja', 'Lj1A523G15' => 'lonja', 'Lj1C1136T11' => 'lonja', 'Lj1C1153G5' => 'lonja', 'Lj1g0008729' => 'lja', 'Lj1g0027715' => 'lja', 'Lj4g0016461' => 'lja', 'Lj7A282T45' => 'lonja', 'Lsat_1_v5_gn_1_59781' => 'lsa', 'Lsat_1_v5_gn_1_68841' => 'lsa', 'Lsat_1_v5_gn_5_44541' => 'lsa', 'Lsat_1_v5_gn_6_37381' => 'lsa', 'Manes.03G046400' => 'mes', 'Manes.03G087603' => 'mes', 'Manes.08G144800' => 'mes', 'Manes.09G140800' => 'mes', 'Manes.15G109000' => 'mes', 'Manes.16G077700' => 'mes', 'Mapoly0028s0111' => 'mpo', 'MapolyY_B0003' => 'mpo', 'MBI01_g13089_MAGBIO' => 'mbi', 'MBI01_g16590_MAGBIO' => 'mbi', 'MBI04_g38352_MAGBIO' => 'mbi', 'MBI06_g30437_MAGBIO' => 'mbi', 'MBI06_g47202_MAGBIO' => 'mbi', 'MBI07_g10932_MAGBIO' => 'mbi', 'MD03G1003700' => 'mdo', 'MD05G1241700' => 'mdo', 'MD08G1073700' => 'mdo', 'MD10G1223600' => 'mdo', 'MD11G1003600' => 'mdo', 'MD12G1004100' => 'mdo', 'MD12G1004300' => 'mdo', 'MD14G1003000' => 'mdo', 'Medtr1g016800' => 'mtr', 'Medtr7g085680' => 'mtr', 'Medtr8g070650' => 'mtr', 'MELO3C010764.2' => 'cme', 'MELO3C015579.2' => 'cme', 'MELO3C016856.2' => 'cme', 'MELO3C026883.2' => 'cme', 'Migut.A00156' => 'egut', 'Migut.E01554' => 'egut', 'Migut.N00555' => 'egut', 'MSTRG.11673' => 'ama', 'MSTRG.14044' => 'ama', 'MSTRG.18024' => 'ama', 'MSTRG.25937' => 'ama', 'Nitab4.5_0000359g0180' => 'nta', 'Nitab4.5_0000551g0150' => 'nta', 'Nitab4.5_0000626g0020' => 'nta', 'Nitab4.5_0006311g0010' => 'nta', 'Nitab4.5_0011070g0020' => 'nta', 'Nitab4.5_0026702g0010' => 'nta', 'Nn2g12309' => 'nnu', 'Nn2g15858' => 'nnu', 'Nn3g21962' => 'nnu', 'Nn4g26653' => 'nnu', 'Nn6g35391' => 'nnu', 'Nn7g35863' => 'nnu', 'Oeu023701.1' => 'oeu', 'Oeu023951.1' => 'oeu', 'Oeu029403.1' => 'oeu', 'Oeu036352.1' => 'oeu', 'Oeu057698.1' => 'oeu', 'Os01g0680700' => 'osa', 'Os05g0541700' => 'osa', 'Os05g0556600' => 'osa', 'Peaxi162Scf00436g00120' => 'pax', 'Peaxi162Scf00463g00018' => 'pax', 'Peaxi162Scf00705g00312' => 'pax', 'PGR042G0242' => 'pgr', 'PGR044G0779' => 'pgr', 'PGR119G1054' => 'pgr', 'PGSC0003DMG400013825' => 'stu', 'PGSC0003DMG400032167' => 'stu', 'Phvul.001G111300' => 'pvu', 'Phvul.003G274400' => 'pvu', 'Phvul.009G075900' => 'pvu', 'Potri.001G004000' => 'ptr', 'Potri.001G073400' => 'ptr', 'Potri.003G157500' => 'ptr', 'Potri.003G221000' => 'ptr', 'Potri.006G233100' => 'ptr', 'Potri.013G057600' => 'ptr', 'Potri.018G059200' => 'ptr', 'Potri.019G035300' => 'ptr', 'Pp3c17_14270' => 'ppa', 'Pp3c1_33320' => 'ppa', 'Pp3c2_2700' => 'ppa', 'Pp3c5_17000' => 'ppa', 'Pp3c6_15840' => 'ppa', 'Prupe.1G415100' => 'ppe', 'Prupe.4G121700' => 'ppe', 'Prupe.6G003400' => 'ppe', 'Prupe.7G004700' => 'ppe', 'Psat4g112440' => 'psa', 'Psat6g018840' => 'psa', 'Psat6g151920' => 'psa', 'PSO063G1120' => 'pso', 'PSO339G3326' => 'pso', 'PSO384G0980' => 'pso', 'PSO832G1989' => 'pso', 'QL01p009060' => 'qlo', 'QL02p001657' => 'qlo', 'QL07p018365' => 'qlo', 'QL11p010646' => 'qlo', 'RcHm_v2.0_Chr5g0022171' => 'rch', 'RcHm_v2.0_Chr5g0083771' => 'rch', 'RcHm_v2.0_Chr6g0310471' => 'rch', 'Rhsim09G0033500' => 'rsi', 'Rhsim11G0047300' => 'rsi', 'Sabra01G0002700' => 'sbr', 'Sabra03G0114200' => 'sbr', 'Sabra03G0164500' => 'sbr', 'Sabra06G0181600' => 'sbr', 'Sabra06G0181700' => 'sbr', 'Sabra13G0051300' => 'sbr', 'Sabra18G0050200' => 'sbr', 'Sabra19G0043800' => 'sbr', 'Sabra19G0047100' => 'sbr', 'SalBow1G0862' => 'sbo', 'SalBow4G2002' => 'sbo', 'Sc05g0005600' => 'sci', 'Sc09g0009650' => 'sci', 'Sc13g0002660' => 'sci', 'Sed0000349' => 'sed', 'Sed0009703' => 'sed', 'Sed0010726' => 'sed', 'Sed0018755' => 'sed', 'Sed0022728' => 'sed', 'Sed0028161' => 'sed', 'SEGI_05304' => 'sgi', 'SEGI_05342' => 'sgi', 'SEGI_05736' => 'sgi', 'SEGI_06078' => 'sgi', 'SEGI_11986' => 'sgi', 'SEGI_15756' => 'sgi', 'SEGI_34399' => 'sgi', 'SEGI_40027' => 'sgi', 'SEGI_40545' => 'sgi', 'SGA_v2.0_scaffold163G38039' => 'sas', 'SGA_v2.0_scaffold169G38680' => 'sas', 'SGA_v2.0_scaffold6G03307' => 'sas', 'SMO118G0421' => 'smo', 'Solyc01g005570.4' => 'sly', 'Solyc01g005580.2' => 'sly', 'Solyc08g065840.3' => 'sly', 'Sopen01g001600' => 'spe', 'Sopen01g001610' => 'spe', 'Sopen08g019540' => 'spe', 'Sp1g41020' => 'spa', 'Sp2g09410' => 'spa', 'Sp3g02850' => 'spa', 'TAR084G0004' => 'tar', 'TAR369G0034' => 'tar', 'TAR374G0078' => 'tar', 'TAR374G0322' => 'tar', 'TAR383G0608' => 'tar', 'TAR623G0230' => 'tar', 'TAR624G0555' => 'tar', 'TAR625G0451' => 'tar', 'TAR626G0864' => 'tar', 'TAR633G0754' => 'tar', 'THA.LOC104799179' => 'tha', 'THA.LOC104806233' => 'tha', 'THA.LOC104810326' => 'tha', 'THA.LOC104811967' => 'tha', 'THA.LOC104812927' => 'tha', 'Thecc.02G000400' => 'tca', 'Thecc.05G250200' => 'tca', 'Thecc.09G050800' => 'tca', 'Thecc.09G199800' => 'tca', 'Thhalv10000929m.g' => 'esa', 'Thhalv10011785m.g' => 'esa', 'Thhalv10025632m.g' => 'esa', 'TPR.G13008' => 'tpr', 'TPR.G19828' => 'tpr', 'TPR.G5908' => 'tpr', 'TWI32G0013' => 'twi', 'TWI34G0225' => 'twi', 'TWI34G0691' => 'twi', 'TWI34G0951' => 'twi', 'TWI38G0460' => 'twi', 'TWI60G0252' => 'twi', 'TWI60G1374' => 'twi', 'TWI63G1359' => 'twi', 'TWI63G1836' => 'twi', 'unitig_52.g17517' => 'ugi', 'vmacro00167' => 'vma', 'vmacro12565' => 'vma', 'vmacro12600' => 'vma', 'VMungo0251G1051' => 'vmu', 'VMungo0647G2216' => 'vmu', 'VMungo1309G0835' => 'vmu', 'VMungo1383G3028' => 'vmu', 'Zm00001eb043840' => 'zma', 'Zm00001eb044570' => 'zma', 'Zm00001eb061640' => 'zma', 'Zm00001eb065830' => 'zma', 'Zm00001eb112230' => 'zma', 'Zm00001eb142900' => 'zma', 'Zm00001eb156700' => 'zma', 'Zm00001eb183550' => 'zma', 'Zm00001eb212530' => 'zma', 'Zm00001eb285870' => 'zma', 'Zm00001eb294400' => 'zma', 'Zm00001eb295380' => 'zma', 'Zm00001eb342360' => 'zma', 'Zm00001eb343240' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001435', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001435' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001435', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001435' ) ), 'genes' => array( 'A01p12000' => 'bna', 'A05p17510' => 'bna', 'A05p43510' => 'bna', 'A06p00240' => 'bna', 'A08p00700' => 'bna', 'Aa31LG10G1140' => 'aar', 'Aa31LG5G14460' => 'aar', 'Aa31LG9G8560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2730' => 'aag', 'Actinidia06912' => 'ach', 'Actinidia22081' => 'ach', 'Actinidia30299' => 'ach', 'Actinidia30551' => 'ach', 'Ah.08g212240' => 'amhyb', 'Ah.11g044540' => 'amhyb', 'Ah.13g075430' => 'amhyb', 'Ah.15g091840' => 'amhyb', 'AL1G63390' => 'aly', 'AL3G13770' => 'aly', 'AL7G33610' => 'aly', 'Aqoxy199s001' => 'aox', 'Aqoxy199s002' => 'aox', 'Aqoxy1G00474' => 'aox', 'Aqoxy2G00450' => 'aox', 'Aqoxy7G01333' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B43C0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0S58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3WVNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7Z6ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP2KRU' => 'arhy', 'AT1G55340' => 'ath', 'AT3G03880' => 'ath', 'AT4G20300' => 'ath', 'ATR0219G009' => 'atr', 'ATR0737G061' => 'atr', 'ATR0737G062' => 'atr', 'ATR1125G091' => 'atr', 'Atru.chr2.1394' => 'acertr', 'Atru.chr3.2105' => 'acertr', 'Atru.chr7.2022' => 'acertr', 'Atru.chr7.2023' => 'acertr', 'AUR62009202' => 'cqu', 'AUR62032047' => 'cqu', 'AUR62032702' => 'cqu', 'AUR62040199' => 'cqu', 'AUR62040987' => 'cqu', 'AUR62042965' => 'cqu', 'AUR62043050' => 'cqu', 'BcaB02g10825' => 'bca', 'BcaB03g11667' => 'bca', 'BcaB04g16963' => 'bca', 'BcaC01g01516' => 'bca', 'BcaC05g29900' => 'bca', 'BcaC05g30246' => 'bca', 'BcaC05g30289' => 'bca', 'BcaC08g43617' => 'bca', 'BcaC08g44194' => 'bca', 'BcaC09g51323' => 'bca', 'BcaNung03719' => 'bca', 'BolC1t03504H' => 'bol', 'BolC3t20569H' => 'bol', 'BolC3t21578H' => 'bol', 'BolC5t34972H' => 'bol', 'BolC6t36108H' => 'bol', 'BolC6t36792H' => 'bol', 'BraA01t01142Z' => 'bra', 'BraA05t20645Z' => 'bra', 'BraA05t23091Z' => 'bra', 'BraA06t23240Z' => 'bra', 'BraA08t32127Z' => 'bra', 'C01p35460' => 'bna', 'C03p82870' => 'bna', 'C03p92640' => 'bna', 'C06p10320' => 'bna', 'C06p15990' => 'bna', 'CAN.G1327.8' => 'can', 'CAN.G1834.8' => 'can', 'CAN.G1834.9' => 'can', 'CANSAT11G2351' => 'cansat', 'CANSAT25G0463' => 'cansat', 'CANSAT35G0446' => 'cansat', 'CARHR045000' => 'chi', 'CARHR078000' => 'chi', 'CARHR178340' => 'chi', 'CARHR227120' => 'chi', 'Carub.0001s4385' => 'cru', 'Carub.0003s0307' => 'cru', 'Carub.0007s2088' => 'cru', 'Ca_08270_v3' => 'car', 'Ca_13182_v3' => 'car', 'Ca_22536_v3' => 'car', 'Cc01_g00060' => 'ccan', 'Cc06_g23040' => 'ccan', 'Cc08_g10310' => 'ccan', 'Cc09_g04520' => 'ccan', 'CDE02G3633' => 'cde', 'CDE02G3839' => 'cde', 'CDE05G2098' => 'cde', 'CDE09G1322' => 'cde', 'CDE10G0959' => 'cde', 'Cfa009563' => 'cfa', 'Cfa016447' => 'cfa', 'Cfa017930' => 'cfa', 'Ciclev10009045m.g' => 'ccl', 'Ciclev10015606m.g' => 'ccl', 'Ciclev10016677m.g' => 'ccl', 'Ciclev10022079m.g' => 'ccl', 'CiPaw.09G141100' => 'cil', 'CiPaw.10G001200' => 'cil', 'CiPaw.10G108800' => 'cil', 'CiPaw.13G177000' => 'cil', 'CiPaw.14G136800' => 'cil', 'CiPaw.15G042000' => 'cil', 'ClCG03G014530' => 'cla', 'ClCG05G017720' => 'cla', 'ClCG08G016910' => 'cla', 'ClCG10G013410' => 'cla', 'COL.COLO4_05793' => 'col', 'COL.COLO4_21025' => 'col', 'COL.COLO4_25013' => 'col', 'COL.COLO4_36082' => 'col', 'Cpa.g.sc119.41' => 'cpa', 'Cpa.g.sc51.129' => 'cpa', 'Cpa.g.sc7.189' => 'cpa', 'CsaV3_1G041660' => 'csa', 'CsaV3_2G025700' => 'csa', 'CsaV3_3G043230' => 'csa', 'CsaV3_4G035460' => 'csa', 'CSS0004523' => 'camsi', 'CSS0005800' => 'camsi', 'CSS0040277' => 'camsi', 'CSS0047607' => 'camsi', 'DCAR_000780' => 'dca', 'DCAR_001252' => 'dca', 'DCAR_001977' => 'dca', 'DCAR_004366' => 'dca', 'DCAR_013684' => 'dca', 'Dinv13470' => 'din', 'Dinv13471' => 'din', 'Dinv14576' => 'din', 'Dinv23420' => 'din', 'Dinv27963' => 'din', 'Dinv37020' => 'din', 'Duzib106G0585' => 'dzi', 'Duzib128G1230' => 'dzi', 'Duzib150G0044' => 'dzi', 'Duzib168G0652' => 'dzi', 'Duzib168G1233' => 'dzi', 'Duzib177G0166' => 'dzi', 'Duzib187G1149' => 'dzi', 'Duzib248G0140' => 'dzi', 'ECA233G4767' => 'eca', 'ECA240G2387' => 'eca', 'ECA248G2241' => 'eca', 'ECA248G3436' => 'eca', 'EL10Ac3g06826' => 'bvu', 'EL10Ac7g17301' => 'bvu', 'Eucgr.A02101' => 'egr', 'Eucgr.C03003' => 'egr', 'Eucgr.J01767' => 'egr', 'FAN11G0616' => 'fan', 'FAN11G2869' => 'fan', 'FAN15G3292' => 'fan', 'FAN16G1601' => 'fan', 'FAN20G1683' => 'fan', 'FAN21G0103' => 'fan', 'FAN21G0155' => 'fan', 'FAN24G1394' => 'fan', 'FAN25G1540' => 'fan', 'FAN25G3141' => 'fan', 'FAN27G2292' => 'fan', 'FvH4_2g32200' => 'fve', 'FvH4_3g13430' => 'fve', 'FvH4_3g45580' => 'fve', 'Glyma.04G050000' => 'gma', 'Glyma.06G050600' => 'gma', 'Glyma.14G092600' => 'gma', 'Glyma.16G040500' => 'gma', 'Glyma.16G094400' => 'gma', 'Glyma.17G230900' => 'gma', 'Glyma.19G112600' => 'gma', 'Gohir.A03G022200' => 'ghi', 'Gohir.A05G044000' => 'ghi', 'Gohir.A07G022148' => 'ghi', 'Gohir.A11G235700' => 'ghi', 'Gohir.A13G099700' => 'ghi', 'Gohir.A13G099800' => 'ghi', 'Gohir.D01G129200' => 'ghi', 'Gohir.D03G146500' => 'ghi', 'Gohir.D05G045600' => 'ghi', 'Gohir.D07G023100' => 'ghi', 'Gohir.D11G246600' => 'ghi', 'Gohir.D13G103200' => 'ghi', 'Gorai.001G023800' => 'gra', 'Gorai.003G153900' => 'gra', 'Gorai.007G262500' => 'gra', 'Gorai.009G047000' => 'gra', 'Gorai.013G115700' => 'gra', 'GSVIVG01025467001' => 'vvi', 'GSVIVG01033408001' => 'vvi', 'GSVIVG01035342001' => 'vvi', 'HanXRQChr01g0021411' => 'han', 'HanXRQChr01g0024751' => 'han', 'HanXRQChr02g0054561' => 'han', 'HanXRQChr03g0078821' => 'han', 'HanXRQChr13g0410641' => 'han', 'HanXRQChr17g0556881' => 'han', 'Haze_05180' => 'cav', 'Haze_18219' => 'cav', 'Haze_18220' => 'cav', 'Haze_19425' => 'cav', 'Haze_22942' => 'cav', 'Hma1.2p1_0589F.1_g184900' => 'hma', 'Hma1.2p1_1266F.1_g271400' => 'hma', 'HPP92_006480' => 'vpl', 'HPP92_010133' => 'vpl', 'HPP92_015920' => 'vpl', 'HPP92_015935' => 'vpl', 'Hund03362' => 'sun', 'Hund19477' => 'sun', 'Hund20139' => 'sun', 'Lalb_Chr08g0245121' => 'lal', 'Lalb_Chr11g0063081' => 'lal', 'Lalb_Chr11g0063091' => 'lal', 'Lalb_Chr14g0364541' => 'lal', 'Lalb_Chr14g0367871' => 'lal', 'Lalb_Chr22g0355981' => 'lal', 'Lalb_Chr22g0359121' => 'lal', 'Lj1A522G59' => 'lonja', 'Lj1A523G15' => 'lonja', 'Lj1C1136T11' => 'lonja', 'Lj1C1153G5' => 'lonja', 'Lj1g0008729' => 'lja', 'Lj1g0027715' => 'lja', 'Lj4g0016461' => 'lja', 'Lj7A282T45' => 'lonja', 'Lsat_1_v5_gn_1_59781' => 'lsa', 'Lsat_1_v5_gn_1_68841' => 'lsa', 'Lsat_1_v5_gn_5_44541' => 'lsa', 'Lsat_1_v5_gn_6_37381' => 'lsa', 'Manes.03G046400' => 'mes', 'Manes.03G087603' => 'mes', 'Manes.08G144800' => 'mes', 'Manes.09G140800' => 'mes', 'Manes.15G109000' => 'mes', 'Manes.16G077700' => 'mes', 'Mapoly0028s0111' => 'mpo', 'MapolyY_B0003' => 'mpo', 'MBI01_g13089_MAGBIO' => 'mbi', 'MBI01_g16590_MAGBIO' => 'mbi', 'MBI04_g38352_MAGBIO' => 'mbi', 'MBI06_g30437_MAGBIO' => 'mbi', 'MBI06_g47202_MAGBIO' => 'mbi', 'MBI07_g10932_MAGBIO' => 'mbi', 'MD03G1003700' => 'mdo', 'MD05G1241700' => 'mdo', 'MD08G1073700' => 'mdo', 'MD10G1223600' => 'mdo', 'MD11G1003600' => 'mdo', 'MD12G1004100' => 'mdo', 'MD12G1004300' => 'mdo', 'MD14G1003000' => 'mdo', 'Medtr1g016800' => 'mtr', 'Medtr7g085680' => 'mtr', 'Medtr8g070650' => 'mtr', 'MELO3C010764.2' => 'cme', 'MELO3C015579.2' => 'cme', 'MELO3C016856.2' => 'cme', 'MELO3C026883.2' => 'cme', 'Migut.A00156' => 'egut', 'Migut.E01554' => 'egut', 'Migut.N00555' => 'egut', 'MSTRG.11673' => 'ama', 'MSTRG.14044' => 'ama', 'MSTRG.18024' => 'ama', 'MSTRG.25937' => 'ama', 'Nitab4.5_0000359g0180' => 'nta', 'Nitab4.5_0000551g0150' => 'nta', 'Nitab4.5_0000626g0020' => 'nta', 'Nitab4.5_0006311g0010' => 'nta', 'Nitab4.5_0011070g0020' => 'nta', 'Nitab4.5_0026702g0010' => 'nta', 'Nn2g12309' => 'nnu', 'Nn2g15858' => 'nnu', 'Nn3g21962' => 'nnu', 'Nn4g26653' => 'nnu', 'Nn6g35391' => 'nnu', 'Nn7g35863' => 'nnu', 'Oeu023701.1' => 'oeu', 'Oeu023951.1' => 'oeu', 'Oeu029403.1' => 'oeu', 'Oeu036352.1' => 'oeu', 'Oeu057698.1' => 'oeu', 'Os01g0680700' => 'osa', 'Os05g0541700' => 'osa', 'Os05g0556600' => 'osa', 'Peaxi162Scf00436g00120' => 'pax', 'Peaxi162Scf00463g00018' => 'pax', 'Peaxi162Scf00705g00312' => 'pax', 'PGR042G0242' => 'pgr', 'PGR044G0779' => 'pgr', 'PGR119G1054' => 'pgr', 'PGSC0003DMG400013825' => 'stu', 'PGSC0003DMG400032167' => 'stu', 'Phvul.001G111300' => 'pvu', 'Phvul.003G274400' => 'pvu', 'Phvul.009G075900' => 'pvu', 'Potri.001G004000' => 'ptr', 'Potri.001G073400' => 'ptr', 'Potri.003G157500' => 'ptr', 'Potri.003G221000' => 'ptr', 'Potri.006G233100' => 'ptr', 'Potri.013G057600' => 'ptr', 'Potri.018G059200' => 'ptr', 'Potri.019G035300' => 'ptr', 'Pp3c17_14270' => 'ppa', 'Pp3c1_33320' => 'ppa', 'Pp3c2_2700' => 'ppa', 'Pp3c5_17000' => 'ppa', 'Pp3c6_15840' => 'ppa', 'Prupe.1G415100' => 'ppe', 'Prupe.4G121700' => 'ppe', 'Prupe.6G003400' => 'ppe', 'Prupe.7G004700' => 'ppe', 'Psat4g112440' => 'psa', 'Psat6g018840' => 'psa', 'Psat6g151920' => 'psa', 'PSO063G1120' => 'pso', 'PSO339G3326' => 'pso', 'PSO384G0980' => 'pso', 'PSO832G1989' => 'pso', 'QL01p009060' => 'qlo', 'QL02p001657' => 'qlo', 'QL07p018365' => 'qlo', 'QL11p010646' => 'qlo', 'RcHm_v2.0_Chr5g0022171' => 'rch', 'RcHm_v2.0_Chr5g0083771' => 'rch', 'RcHm_v2.0_Chr6g0310471' => 'rch', 'Rhsim09G0033500' => 'rsi', 'Rhsim11G0047300' => 'rsi', 'Sabra01G0002700' => 'sbr', 'Sabra03G0114200' => 'sbr', 'Sabra03G0164500' => 'sbr', 'Sabra06G0181600' => 'sbr', 'Sabra06G0181700' => 'sbr', 'Sabra13G0051300' => 'sbr', 'Sabra18G0050200' => 'sbr', 'Sabra19G0043800' => 'sbr', 'Sabra19G0047100' => 'sbr', 'SalBow1G0862' => 'sbo', 'SalBow4G2002' => 'sbo', 'Sc05g0005600' => 'sci', 'Sc09g0009650' => 'sci', 'Sc13g0002660' => 'sci', 'Sed0000349' => 'sed', 'Sed0009703' => 'sed', 'Sed0010726' => 'sed', 'Sed0018755' => 'sed', 'Sed0022728' => 'sed', 'Sed0028161' => 'sed', 'SEGI_05304' => 'sgi', 'SEGI_05342' => 'sgi', 'SEGI_05736' => 'sgi', 'SEGI_06078' => 'sgi', 'SEGI_11986' => 'sgi', 'SEGI_15756' => 'sgi', 'SEGI_34399' => 'sgi', 'SEGI_40027' => 'sgi', 'SEGI_40545' => 'sgi', 'SGA_v2.0_scaffold163G38039' => 'sas', 'SGA_v2.0_scaffold169G38680' => 'sas', 'SGA_v2.0_scaffold6G03307' => 'sas', 'SMO118G0421' => 'smo', 'Solyc01g005570.4' => 'sly', 'Solyc01g005580.2' => 'sly', 'Solyc08g065840.3' => 'sly', 'Sopen01g001600' => 'spe', 'Sopen01g001610' => 'spe', 'Sopen08g019540' => 'spe', 'Sp1g41020' => 'spa', 'Sp2g09410' => 'spa', 'Sp3g02850' => 'spa', 'TAR084G0004' => 'tar', 'TAR369G0034' => 'tar', 'TAR374G0078' => 'tar', 'TAR374G0322' => 'tar', 'TAR383G0608' => 'tar', 'TAR623G0230' => 'tar', 'TAR624G0555' => 'tar', 'TAR625G0451' => 'tar', 'TAR626G0864' => 'tar', 'TAR633G0754' => 'tar', 'THA.LOC104799179' => 'tha', 'THA.LOC104806233' => 'tha', 'THA.LOC104810326' => 'tha', 'THA.LOC104811967' => 'tha', 'THA.LOC104812927' => 'tha', 'Thecc.02G000400' => 'tca', 'Thecc.05G250200' => 'tca', 'Thecc.09G050800' => 'tca', 'Thecc.09G199800' => 'tca', 'Thhalv10000929m.g' => 'esa', 'Thhalv10011785m.g' => 'esa', 'Thhalv10025632m.g' => 'esa', 'TPR.G13008' => 'tpr', 'TPR.G19828' => 'tpr', 'TPR.G5908' => 'tpr', 'TWI32G0013' => 'twi', 'TWI34G0225' => 'twi', 'TWI34G0691' => 'twi', 'TWI34G0951' => 'twi', 'TWI38G0460' => 'twi', 'TWI60G0252' => 'twi', 'TWI60G1374' => 'twi', 'TWI63G1359' => 'twi', 'TWI63G1836' => 'twi', 'unitig_52.g17517' => 'ugi', 'vmacro00167' => 'vma', 'vmacro12565' => 'vma', 'vmacro12600' => 'vma', 'VMungo0251G1051' => 'vmu', 'VMungo0647G2216' => 'vmu', 'VMungo1309G0835' => 'vmu', 'VMungo1383G3028' => 'vmu', 'Zm00001eb043840' => 'zma', 'Zm00001eb044570' => 'zma', 'Zm00001eb061640' => 'zma', 'Zm00001eb065830' => 'zma', 'Zm00001eb112230' => 'zma', 'Zm00001eb142900' => 'zma', 'Zm00001eb156700' => 'zma', 'Zm00001eb183550' => 'zma', 'Zm00001eb212530' => 'zma', 'Zm00001eb285870' => 'zma', 'Zm00001eb294400' => 'zma', 'Zm00001eb295380' => 'zma', 'Zm00001eb342360' => 'zma', 'Zm00001eb343240' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001435' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001435' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001435' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001435' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001435', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12000' => 'bna', 'A05p17510' => 'bna', 'A05p43510' => 'bna', 'A06p00240' => 'bna', 'A08p00700' => 'bna', 'Aa31LG10G1140' => 'aar', 'Aa31LG5G14460' => 'aar', 'Aa31LG9G8560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2730' => 'aag', 'Actinidia06912' => 'ach', 'Actinidia22081' => 'ach', 'Actinidia30299' => 'ach', 'Actinidia30551' => 'ach', 'Ah.08g212240' => 'amhyb', 'Ah.11g044540' => 'amhyb', 'Ah.13g075430' => 'amhyb', 'Ah.15g091840' => 'amhyb', 'AL1G63390' => 'aly', 'AL3G13770' => 'aly', 'AL7G33610' => 'aly', 'Aqoxy199s001' => 'aox', 'Aqoxy199s002' => 'aox', 'Aqoxy1G00474' => 'aox', 'Aqoxy2G00450' => 'aox', 'Aqoxy7G01333' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B43C0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0S58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3WVNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7Z6ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP2KRU' => 'arhy', 'AT1G55340' => 'ath', 'AT3G03880' => 'ath', 'AT4G20300' => 'ath', 'ATR0219G009' => 'atr', 'ATR0737G061' => 'atr', 'ATR0737G062' => 'atr', 'ATR1125G091' => 'atr', 'Atru.chr2.1394' => 'acertr', 'Atru.chr3.2105' => 'acertr', 'Atru.chr7.2022' => 'acertr', 'Atru.chr7.2023' => 'acertr', 'AUR62009202' => 'cqu', 'AUR62032047' => 'cqu', 'AUR62032702' => 'cqu', 'AUR62040199' => 'cqu', 'AUR62040987' => 'cqu', 'AUR62042965' => 'cqu', 'AUR62043050' => 'cqu', 'BcaB02g10825' => 'bca', 'BcaB03g11667' => 'bca', 'BcaB04g16963' => 'bca', 'BcaC01g01516' => 'bca', 'BcaC05g29900' => 'bca', 'BcaC05g30246' => 'bca', 'BcaC05g30289' => 'bca', 'BcaC08g43617' => 'bca', 'BcaC08g44194' => 'bca', 'BcaC09g51323' => 'bca', 'BcaNung03719' => 'bca', 'BolC1t03504H' => 'bol', 'BolC3t20569H' => 'bol', 'BolC3t21578H' => 'bol', 'BolC5t34972H' => 'bol', 'BolC6t36108H' => 'bol', 'BolC6t36792H' => 'bol', 'BraA01t01142Z' => 'bra', 'BraA05t20645Z' => 'bra', 'BraA05t23091Z' => 'bra', 'BraA06t23240Z' => 'bra', 'BraA08t32127Z' => 'bra', 'C01p35460' => 'bna', 'C03p82870' => 'bna', 'C03p92640' => 'bna', 'C06p10320' => 'bna', 'C06p15990' => 'bna', 'CAN.G1327.8' => 'can', 'CAN.G1834.8' => 'can', 'CAN.G1834.9' => 'can', 'CANSAT11G2351' => 'cansat', 'CANSAT25G0463' => 'cansat', 'CANSAT35G0446' => 'cansat', 'CARHR045000' => 'chi', 'CARHR078000' => 'chi', 'CARHR178340' => 'chi', 'CARHR227120' => 'chi', 'Carub.0001s4385' => 'cru', 'Carub.0003s0307' => 'cru', 'Carub.0007s2088' => 'cru', 'Ca_08270_v3' => 'car', 'Ca_13182_v3' => 'car', 'Ca_22536_v3' => 'car', 'Cc01_g00060' => 'ccan', 'Cc06_g23040' => 'ccan', 'Cc08_g10310' => 'ccan', 'Cc09_g04520' => 'ccan', 'CDE02G3633' => 'cde', 'CDE02G3839' => 'cde', 'CDE05G2098' => 'cde', 'CDE09G1322' => 'cde', 'CDE10G0959' => 'cde', 'Cfa009563' => 'cfa', 'Cfa016447' => 'cfa', 'Cfa017930' => 'cfa', 'Ciclev10009045m.g' => 'ccl', 'Ciclev10015606m.g' => 'ccl', 'Ciclev10016677m.g' => 'ccl', 'Ciclev10022079m.g' => 'ccl', 'CiPaw.09G141100' => 'cil', 'CiPaw.10G001200' => 'cil', 'CiPaw.10G108800' => 'cil', 'CiPaw.13G177000' => 'cil', 'CiPaw.14G136800' => 'cil', 'CiPaw.15G042000' => 'cil', 'ClCG03G014530' => 'cla', 'ClCG05G017720' => 'cla', 'ClCG08G016910' => 'cla', 'ClCG10G013410' => 'cla', 'COL.COLO4_05793' => 'col', 'COL.COLO4_21025' => 'col', 'COL.COLO4_25013' => 'col', 'COL.COLO4_36082' => 'col', 'Cpa.g.sc119.41' => 'cpa', 'Cpa.g.sc51.129' => 'cpa', 'Cpa.g.sc7.189' => 'cpa', 'CsaV3_1G041660' => 'csa', 'CsaV3_2G025700' => 'csa', 'CsaV3_3G043230' => 'csa', 'CsaV3_4G035460' => 'csa', 'CSS0004523' => 'camsi', 'CSS0005800' => 'camsi', 'CSS0040277' => 'camsi', 'CSS0047607' => 'camsi', 'DCAR_000780' => 'dca', 'DCAR_001252' => 'dca', 'DCAR_001977' => 'dca', 'DCAR_004366' => 'dca', 'DCAR_013684' => 'dca', 'Dinv13470' => 'din', 'Dinv13471' => 'din', 'Dinv14576' => 'din', 'Dinv23420' => 'din', 'Dinv27963' => 'din', 'Dinv37020' => 'din', 'Duzib106G0585' => 'dzi', 'Duzib128G1230' => 'dzi', 'Duzib150G0044' => 'dzi', 'Duzib168G0652' => 'dzi', 'Duzib168G1233' => 'dzi', 'Duzib177G0166' => 'dzi', 'Duzib187G1149' => 'dzi', 'Duzib248G0140' => 'dzi', 'ECA233G4767' => 'eca', 'ECA240G2387' => 'eca', 'ECA248G2241' => 'eca', 'ECA248G3436' => 'eca', 'EL10Ac3g06826' => 'bvu', 'EL10Ac7g17301' => 'bvu', 'Eucgr.A02101' => 'egr', 'Eucgr.C03003' => 'egr', 'Eucgr.J01767' => 'egr', 'FAN11G0616' => 'fan', 'FAN11G2869' => 'fan', 'FAN15G3292' => 'fan', 'FAN16G1601' => 'fan', 'FAN20G1683' => 'fan', 'FAN21G0103' => 'fan', 'FAN21G0155' => 'fan', 'FAN24G1394' => 'fan', 'FAN25G1540' => 'fan', 'FAN25G3141' => 'fan', 'FAN27G2292' => 'fan', 'FvH4_2g32200' => 'fve', 'FvH4_3g13430' => 'fve', 'FvH4_3g45580' => 'fve', 'Glyma.04G050000' => 'gma', 'Glyma.06G050600' => 'gma', 'Glyma.14G092600' => 'gma', 'Glyma.16G040500' => 'gma', 'Glyma.16G094400' => 'gma', 'Glyma.17G230900' => 'gma', 'Glyma.19G112600' => 'gma', 'Gohir.A03G022200' => 'ghi', 'Gohir.A05G044000' => 'ghi', 'Gohir.A07G022148' => 'ghi', 'Gohir.A11G235700' => 'ghi', 'Gohir.A13G099700' => 'ghi', 'Gohir.A13G099800' => 'ghi', 'Gohir.D01G129200' => 'ghi', 'Gohir.D03G146500' => 'ghi', 'Gohir.D05G045600' => 'ghi', 'Gohir.D07G023100' => 'ghi', 'Gohir.D11G246600' => 'ghi', 'Gohir.D13G103200' => 'ghi', 'Gorai.001G023800' => 'gra', 'Gorai.003G153900' => 'gra', 'Gorai.007G262500' => 'gra', 'Gorai.009G047000' => 'gra', 'Gorai.013G115700' => 'gra', 'GSVIVG01025467001' => 'vvi', 'GSVIVG01033408001' => 'vvi', 'GSVIVG01035342001' => 'vvi', 'HanXRQChr01g0021411' => 'han', 'HanXRQChr01g0024751' => 'han', 'HanXRQChr02g0054561' => 'han', 'HanXRQChr03g0078821' => 'han', 'HanXRQChr13g0410641' => 'han', 'HanXRQChr17g0556881' => 'han', 'Haze_05180' => 'cav', 'Haze_18219' => 'cav', 'Haze_18220' => 'cav', 'Haze_19425' => 'cav', 'Haze_22942' => 'cav', 'Hma1.2p1_0589F.1_g184900' => 'hma', 'Hma1.2p1_1266F.1_g271400' => 'hma', 'HPP92_006480' => 'vpl', 'HPP92_010133' => 'vpl', 'HPP92_015920' => 'vpl', 'HPP92_015935' => 'vpl', 'Hund03362' => 'sun', 'Hund19477' => 'sun', 'Hund20139' => 'sun', 'Lalb_Chr08g0245121' => 'lal', 'Lalb_Chr11g0063081' => 'lal', 'Lalb_Chr11g0063091' => 'lal', 'Lalb_Chr14g0364541' => 'lal', 'Lalb_Chr14g0367871' => 'lal', 'Lalb_Chr22g0355981' => 'lal', 'Lalb_Chr22g0359121' => 'lal', 'Lj1A522G59' => 'lonja', 'Lj1A523G15' => 'lonja', 'Lj1C1136T11' => 'lonja', 'Lj1C1153G5' => 'lonja', 'Lj1g0008729' => 'lja', 'Lj1g0027715' => 'lja', 'Lj4g0016461' => 'lja', 'Lj7A282T45' => 'lonja', 'Lsat_1_v5_gn_1_59781' => 'lsa', 'Lsat_1_v5_gn_1_68841' => 'lsa', 'Lsat_1_v5_gn_5_44541' => 'lsa', 'Lsat_1_v5_gn_6_37381' => 'lsa', 'Manes.03G046400' => 'mes', 'Manes.03G087603' => 'mes', 'Manes.08G144800' => 'mes', 'Manes.09G140800' => 'mes', 'Manes.15G109000' => 'mes', 'Manes.16G077700' => 'mes', 'Mapoly0028s0111' => 'mpo', 'MapolyY_B0003' => 'mpo', 'MBI01_g13089_MAGBIO' => 'mbi', 'MBI01_g16590_MAGBIO' => 'mbi', 'MBI04_g38352_MAGBIO' => 'mbi', 'MBI06_g30437_MAGBIO' => 'mbi', 'MBI06_g47202_MAGBIO' => 'mbi', 'MBI07_g10932_MAGBIO' => 'mbi', 'MD03G1003700' => 'mdo', 'MD05G1241700' => 'mdo', 'MD08G1073700' => 'mdo', 'MD10G1223600' => 'mdo', 'MD11G1003600' => 'mdo', 'MD12G1004100' => 'mdo', 'MD12G1004300' => 'mdo', 'MD14G1003000' => 'mdo', 'Medtr1g016800' => 'mtr', 'Medtr7g085680' => 'mtr', 'Medtr8g070650' => 'mtr', 'MELO3C010764.2' => 'cme', 'MELO3C015579.2' => 'cme', 'MELO3C016856.2' => 'cme', 'MELO3C026883.2' => 'cme', 'Migut.A00156' => 'egut', 'Migut.E01554' => 'egut', 'Migut.N00555' => 'egut', 'MSTRG.11673' => 'ama', 'MSTRG.14044' => 'ama', 'MSTRG.18024' => 'ama', 'MSTRG.25937' => 'ama', 'Nitab4.5_0000359g0180' => 'nta', 'Nitab4.5_0000551g0150' => 'nta', 'Nitab4.5_0000626g0020' => 'nta', 'Nitab4.5_0006311g0010' => 'nta', 'Nitab4.5_0011070g0020' => 'nta', 'Nitab4.5_0026702g0010' => 'nta', 'Nn2g12309' => 'nnu', 'Nn2g15858' => 'nnu', 'Nn3g21962' => 'nnu', 'Nn4g26653' => 'nnu', 'Nn6g35391' => 'nnu', 'Nn7g35863' => 'nnu', 'Oeu023701.1' => 'oeu', 'Oeu023951.1' => 'oeu', 'Oeu029403.1' => 'oeu', 'Oeu036352.1' => 'oeu', 'Oeu057698.1' => 'oeu', 'Os01g0680700' => 'osa', 'Os05g0541700' => 'osa', 'Os05g0556600' => 'osa', 'Peaxi162Scf00436g00120' => 'pax', 'Peaxi162Scf00463g00018' => 'pax', 'Peaxi162Scf00705g00312' => 'pax', 'PGR042G0242' => 'pgr', 'PGR044G0779' => 'pgr', 'PGR119G1054' => 'pgr', 'PGSC0003DMG400013825' => 'stu', 'PGSC0003DMG400032167' => 'stu', 'Phvul.001G111300' => 'pvu', 'Phvul.003G274400' => 'pvu', 'Phvul.009G075900' => 'pvu', 'Potri.001G004000' => 'ptr', 'Potri.001G073400' => 'ptr', 'Potri.003G157500' => 'ptr', 'Potri.003G221000' => 'ptr', 'Potri.006G233100' => 'ptr', 'Potri.013G057600' => 'ptr', 'Potri.018G059200' => 'ptr', 'Potri.019G035300' => 'ptr', 'Pp3c17_14270' => 'ppa', 'Pp3c1_33320' => 'ppa', 'Pp3c2_2700' => 'ppa', 'Pp3c5_17000' => 'ppa', 'Pp3c6_15840' => 'ppa', 'Prupe.1G415100' => 'ppe', 'Prupe.4G121700' => 'ppe', 'Prupe.6G003400' => 'ppe', 'Prupe.7G004700' => 'ppe', 'Psat4g112440' => 'psa', 'Psat6g018840' => 'psa', 'Psat6g151920' => 'psa', 'PSO063G1120' => 'pso', 'PSO339G3326' => 'pso', 'PSO384G0980' => 'pso', 'PSO832G1989' => 'pso', 'QL01p009060' => 'qlo', 'QL02p001657' => 'qlo', 'QL07p018365' => 'qlo', 'QL11p010646' => 'qlo', 'RcHm_v2.0_Chr5g0022171' => 'rch', 'RcHm_v2.0_Chr5g0083771' => 'rch', 'RcHm_v2.0_Chr6g0310471' => 'rch', 'Rhsim09G0033500' => 'rsi', 'Rhsim11G0047300' => 'rsi', 'Sabra01G0002700' => 'sbr', 'Sabra03G0114200' => 'sbr', 'Sabra03G0164500' => 'sbr', 'Sabra06G0181600' => 'sbr', 'Sabra06G0181700' => 'sbr', 'Sabra13G0051300' => 'sbr', 'Sabra18G0050200' => 'sbr', 'Sabra19G0043800' => 'sbr', 'Sabra19G0047100' => 'sbr', 'SalBow1G0862' => 'sbo', 'SalBow4G2002' => 'sbo', 'Sc05g0005600' => 'sci', 'Sc09g0009650' => 'sci', 'Sc13g0002660' => 'sci', 'Sed0000349' => 'sed', 'Sed0009703' => 'sed', 'Sed0010726' => 'sed', 'Sed0018755' => 'sed', 'Sed0022728' => 'sed', 'Sed0028161' => 'sed', 'SEGI_05304' => 'sgi', 'SEGI_05342' => 'sgi', 'SEGI_05736' => 'sgi', 'SEGI_06078' => 'sgi', 'SEGI_11986' => 'sgi', 'SEGI_15756' => 'sgi', 'SEGI_34399' => 'sgi', 'SEGI_40027' => 'sgi', 'SEGI_40545' => 'sgi', 'SGA_v2.0_scaffold163G38039' => 'sas', 'SGA_v2.0_scaffold169G38680' => 'sas', 'SGA_v2.0_scaffold6G03307' => 'sas', 'SMO118G0421' => 'smo', 'Solyc01g005570.4' => 'sly', 'Solyc01g005580.2' => 'sly', 'Solyc08g065840.3' => 'sly', 'Sopen01g001600' => 'spe', 'Sopen01g001610' => 'spe', 'Sopen08g019540' => 'spe', 'Sp1g41020' => 'spa', 'Sp2g09410' => 'spa', 'Sp3g02850' => 'spa', 'TAR084G0004' => 'tar', 'TAR369G0034' => 'tar', 'TAR374G0078' => 'tar', 'TAR374G0322' => 'tar', 'TAR383G0608' => 'tar', 'TAR623G0230' => 'tar', 'TAR624G0555' => 'tar', 'TAR625G0451' => 'tar', 'TAR626G0864' => 'tar', 'TAR633G0754' => 'tar', 'THA.LOC104799179' => 'tha', 'THA.LOC104806233' => 'tha', 'THA.LOC104810326' => 'tha', 'THA.LOC104811967' => 'tha', 'THA.LOC104812927' => 'tha', 'Thecc.02G000400' => 'tca', 'Thecc.05G250200' => 'tca', 'Thecc.09G050800' => 'tca', 'Thecc.09G199800' => 'tca', 'Thhalv10000929m.g' => 'esa', 'Thhalv10011785m.g' => 'esa', 'Thhalv10025632m.g' => 'esa', 'TPR.G13008' => 'tpr', 'TPR.G19828' => 'tpr', 'TPR.G5908' => 'tpr', 'TWI32G0013' => 'twi', 'TWI34G0225' => 'twi', 'TWI34G0691' => 'twi', 'TWI34G0951' => 'twi', 'TWI38G0460' => 'twi', 'TWI60G0252' => 'twi', 'TWI60G1374' => 'twi', 'TWI63G1359' => 'twi', 'TWI63G1836' => 'twi', 'unitig_52.g17517' => 'ugi', 'vmacro00167' => 'vma', 'vmacro12565' => 'vma', 'vmacro12600' => 'vma', 'VMungo0251G1051' => 'vmu', 'VMungo0647G2216' => 'vmu', 'VMungo1309G0835' => 'vmu', 'VMungo1383G3028' => 'vmu', 'Zm00001eb043840' => 'zma', 'Zm00001eb044570' => 'zma', 'Zm00001eb061640' => 'zma', 'Zm00001eb065830' => 'zma', 'Zm00001eb112230' => 'zma', 'Zm00001eb142900' => 'zma', 'Zm00001eb156700' => 'zma', 'Zm00001eb183550' => 'zma', 'Zm00001eb212530' => 'zma', 'Zm00001eb285870' => 'zma', 'Zm00001eb294400' => 'zma', 'Zm00001eb295380' => 'zma', 'Zm00001eb342360' => 'zma', 'Zm00001eb343240' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001435', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001435' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001435', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001435' ) ), 'genes' => array( 'A01p12000' => 'bna', 'A05p17510' => 'bna', 'A05p43510' => 'bna', 'A06p00240' => 'bna', 'A08p00700' => 'bna', 'Aa31LG10G1140' => 'aar', 'Aa31LG5G14460' => 'aar', 'Aa31LG9G8560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2730' => 'aag', 'Actinidia06912' => 'ach', 'Actinidia22081' => 'ach', 'Actinidia30299' => 'ach', 'Actinidia30551' => 'ach', 'Ah.08g212240' => 'amhyb', 'Ah.11g044540' => 'amhyb', 'Ah.13g075430' => 'amhyb', 'Ah.15g091840' => 'amhyb', 'AL1G63390' => 'aly', 'AL3G13770' => 'aly', 'AL7G33610' => 'aly', 'Aqoxy199s001' => 'aox', 'Aqoxy199s002' => 'aox', 'Aqoxy1G00474' => 'aox', 'Aqoxy2G00450' => 'aox', 'Aqoxy7G01333' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B43C0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0S58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3WVNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7Z6ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP2KRU' => 'arhy', 'AT1G55340' => 'ath', 'AT3G03880' => 'ath', 'AT4G20300' => 'ath', 'ATR0219G009' => 'atr', 'ATR0737G061' => 'atr', 'ATR0737G062' => 'atr', 'ATR1125G091' => 'atr', 'Atru.chr2.1394' => 'acertr', 'Atru.chr3.2105' => 'acertr', 'Atru.chr7.2022' => 'acertr', 'Atru.chr7.2023' => 'acertr', 'AUR62009202' => 'cqu', 'AUR62032047' => 'cqu', 'AUR62032702' => 'cqu', 'AUR62040199' => 'cqu', 'AUR62040987' => 'cqu', 'AUR62042965' => 'cqu', 'AUR62043050' => 'cqu', 'BcaB02g10825' => 'bca', 'BcaB03g11667' => 'bca', 'BcaB04g16963' => 'bca', 'BcaC01g01516' => 'bca', 'BcaC05g29900' => 'bca', 'BcaC05g30246' => 'bca', 'BcaC05g30289' => 'bca', 'BcaC08g43617' => 'bca', 'BcaC08g44194' => 'bca', 'BcaC09g51323' => 'bca', 'BcaNung03719' => 'bca', 'BolC1t03504H' => 'bol', 'BolC3t20569H' => 'bol', 'BolC3t21578H' => 'bol', 'BolC5t34972H' => 'bol', 'BolC6t36108H' => 'bol', 'BolC6t36792H' => 'bol', 'BraA01t01142Z' => 'bra', 'BraA05t20645Z' => 'bra', 'BraA05t23091Z' => 'bra', 'BraA06t23240Z' => 'bra', 'BraA08t32127Z' => 'bra', 'C01p35460' => 'bna', 'C03p82870' => 'bna', 'C03p92640' => 'bna', 'C06p10320' => 'bna', 'C06p15990' => 'bna', 'CAN.G1327.8' => 'can', 'CAN.G1834.8' => 'can', 'CAN.G1834.9' => 'can', 'CANSAT11G2351' => 'cansat', 'CANSAT25G0463' => 'cansat', 'CANSAT35G0446' => 'cansat', 'CARHR045000' => 'chi', 'CARHR078000' => 'chi', 'CARHR178340' => 'chi', 'CARHR227120' => 'chi', 'Carub.0001s4385' => 'cru', 'Carub.0003s0307' => 'cru', 'Carub.0007s2088' => 'cru', 'Ca_08270_v3' => 'car', 'Ca_13182_v3' => 'car', 'Ca_22536_v3' => 'car', 'Cc01_g00060' => 'ccan', 'Cc06_g23040' => 'ccan', 'Cc08_g10310' => 'ccan', 'Cc09_g04520' => 'ccan', 'CDE02G3633' => 'cde', 'CDE02G3839' => 'cde', 'CDE05G2098' => 'cde', 'CDE09G1322' => 'cde', 'CDE10G0959' => 'cde', 'Cfa009563' => 'cfa', 'Cfa016447' => 'cfa', 'Cfa017930' => 'cfa', 'Ciclev10009045m.g' => 'ccl', 'Ciclev10015606m.g' => 'ccl', 'Ciclev10016677m.g' => 'ccl', 'Ciclev10022079m.g' => 'ccl', 'CiPaw.09G141100' => 'cil', 'CiPaw.10G001200' => 'cil', 'CiPaw.10G108800' => 'cil', 'CiPaw.13G177000' => 'cil', 'CiPaw.14G136800' => 'cil', 'CiPaw.15G042000' => 'cil', 'ClCG03G014530' => 'cla', 'ClCG05G017720' => 'cla', 'ClCG08G016910' => 'cla', 'ClCG10G013410' => 'cla', 'COL.COLO4_05793' => 'col', 'COL.COLO4_21025' => 'col', 'COL.COLO4_25013' => 'col', 'COL.COLO4_36082' => 'col', 'Cpa.g.sc119.41' => 'cpa', 'Cpa.g.sc51.129' => 'cpa', 'Cpa.g.sc7.189' => 'cpa', 'CsaV3_1G041660' => 'csa', 'CsaV3_2G025700' => 'csa', 'CsaV3_3G043230' => 'csa', 'CsaV3_4G035460' => 'csa', 'CSS0004523' => 'camsi', 'CSS0005800' => 'camsi', 'CSS0040277' => 'camsi', 'CSS0047607' => 'camsi', 'DCAR_000780' => 'dca', 'DCAR_001252' => 'dca', 'DCAR_001977' => 'dca', 'DCAR_004366' => 'dca', 'DCAR_013684' => 'dca', 'Dinv13470' => 'din', 'Dinv13471' => 'din', 'Dinv14576' => 'din', 'Dinv23420' => 'din', 'Dinv27963' => 'din', 'Dinv37020' => 'din', 'Duzib106G0585' => 'dzi', 'Duzib128G1230' => 'dzi', 'Duzib150G0044' => 'dzi', 'Duzib168G0652' => 'dzi', 'Duzib168G1233' => 'dzi', 'Duzib177G0166' => 'dzi', 'Duzib187G1149' => 'dzi', 'Duzib248G0140' => 'dzi', 'ECA233G4767' => 'eca', 'ECA240G2387' => 'eca', 'ECA248G2241' => 'eca', 'ECA248G3436' => 'eca', 'EL10Ac3g06826' => 'bvu', 'EL10Ac7g17301' => 'bvu', 'Eucgr.A02101' => 'egr', 'Eucgr.C03003' => 'egr', 'Eucgr.J01767' => 'egr', 'FAN11G0616' => 'fan', 'FAN11G2869' => 'fan', 'FAN15G3292' => 'fan', 'FAN16G1601' => 'fan', 'FAN20G1683' => 'fan', 'FAN21G0103' => 'fan', 'FAN21G0155' => 'fan', 'FAN24G1394' => 'fan', 'FAN25G1540' => 'fan', 'FAN25G3141' => 'fan', 'FAN27G2292' => 'fan', 'FvH4_2g32200' => 'fve', 'FvH4_3g13430' => 'fve', 'FvH4_3g45580' => 'fve', 'Glyma.04G050000' => 'gma', 'Glyma.06G050600' => 'gma', 'Glyma.14G092600' => 'gma', 'Glyma.16G040500' => 'gma', 'Glyma.16G094400' => 'gma', 'Glyma.17G230900' => 'gma', 'Glyma.19G112600' => 'gma', 'Gohir.A03G022200' => 'ghi', 'Gohir.A05G044000' => 'ghi', 'Gohir.A07G022148' => 'ghi', 'Gohir.A11G235700' => 'ghi', 'Gohir.A13G099700' => 'ghi', 'Gohir.A13G099800' => 'ghi', 'Gohir.D01G129200' => 'ghi', 'Gohir.D03G146500' => 'ghi', 'Gohir.D05G045600' => 'ghi', 'Gohir.D07G023100' => 'ghi', 'Gohir.D11G246600' => 'ghi', 'Gohir.D13G103200' => 'ghi', 'Gorai.001G023800' => 'gra', 'Gorai.003G153900' => 'gra', 'Gorai.007G262500' => 'gra', 'Gorai.009G047000' => 'gra', 'Gorai.013G115700' => 'gra', 'GSVIVG01025467001' => 'vvi', 'GSVIVG01033408001' => 'vvi', 'GSVIVG01035342001' => 'vvi', 'HanXRQChr01g0021411' => 'han', 'HanXRQChr01g0024751' => 'han', 'HanXRQChr02g0054561' => 'han', 'HanXRQChr03g0078821' => 'han', 'HanXRQChr13g0410641' => 'han', 'HanXRQChr17g0556881' => 'han', 'Haze_05180' => 'cav', 'Haze_18219' => 'cav', 'Haze_18220' => 'cav', 'Haze_19425' => 'cav', 'Haze_22942' => 'cav', 'Hma1.2p1_0589F.1_g184900' => 'hma', 'Hma1.2p1_1266F.1_g271400' => 'hma', 'HPP92_006480' => 'vpl', 'HPP92_010133' => 'vpl', 'HPP92_015920' => 'vpl', 'HPP92_015935' => 'vpl', 'Hund03362' => 'sun', 'Hund19477' => 'sun', 'Hund20139' => 'sun', 'Lalb_Chr08g0245121' => 'lal', 'Lalb_Chr11g0063081' => 'lal', 'Lalb_Chr11g0063091' => 'lal', 'Lalb_Chr14g0364541' => 'lal', 'Lalb_Chr14g0367871' => 'lal', 'Lalb_Chr22g0355981' => 'lal', 'Lalb_Chr22g0359121' => 'lal', 'Lj1A522G59' => 'lonja', 'Lj1A523G15' => 'lonja', 'Lj1C1136T11' => 'lonja', 'Lj1C1153G5' => 'lonja', 'Lj1g0008729' => 'lja', 'Lj1g0027715' => 'lja', 'Lj4g0016461' => 'lja', 'Lj7A282T45' => 'lonja', 'Lsat_1_v5_gn_1_59781' => 'lsa', 'Lsat_1_v5_gn_1_68841' => 'lsa', 'Lsat_1_v5_gn_5_44541' => 'lsa', 'Lsat_1_v5_gn_6_37381' => 'lsa', 'Manes.03G046400' => 'mes', 'Manes.03G087603' => 'mes', 'Manes.08G144800' => 'mes', 'Manes.09G140800' => 'mes', 'Manes.15G109000' => 'mes', 'Manes.16G077700' => 'mes', 'Mapoly0028s0111' => 'mpo', 'MapolyY_B0003' => 'mpo', 'MBI01_g13089_MAGBIO' => 'mbi', 'MBI01_g16590_MAGBIO' => 'mbi', 'MBI04_g38352_MAGBIO' => 'mbi', 'MBI06_g30437_MAGBIO' => 'mbi', 'MBI06_g47202_MAGBIO' => 'mbi', 'MBI07_g10932_MAGBIO' => 'mbi', 'MD03G1003700' => 'mdo', 'MD05G1241700' => 'mdo', 'MD08G1073700' => 'mdo', 'MD10G1223600' => 'mdo', 'MD11G1003600' => 'mdo', 'MD12G1004100' => 'mdo', 'MD12G1004300' => 'mdo', 'MD14G1003000' => 'mdo', 'Medtr1g016800' => 'mtr', 'Medtr7g085680' => 'mtr', 'Medtr8g070650' => 'mtr', 'MELO3C010764.2' => 'cme', 'MELO3C015579.2' => 'cme', 'MELO3C016856.2' => 'cme', 'MELO3C026883.2' => 'cme', 'Migut.A00156' => 'egut', 'Migut.E01554' => 'egut', 'Migut.N00555' => 'egut', 'MSTRG.11673' => 'ama', 'MSTRG.14044' => 'ama', 'MSTRG.18024' => 'ama', 'MSTRG.25937' => 'ama', 'Nitab4.5_0000359g0180' => 'nta', 'Nitab4.5_0000551g0150' => 'nta', 'Nitab4.5_0000626g0020' => 'nta', 'Nitab4.5_0006311g0010' => 'nta', 'Nitab4.5_0011070g0020' => 'nta', 'Nitab4.5_0026702g0010' => 'nta', 'Nn2g12309' => 'nnu', 'Nn2g15858' => 'nnu', 'Nn3g21962' => 'nnu', 'Nn4g26653' => 'nnu', 'Nn6g35391' => 'nnu', 'Nn7g35863' => 'nnu', 'Oeu023701.1' => 'oeu', 'Oeu023951.1' => 'oeu', 'Oeu029403.1' => 'oeu', 'Oeu036352.1' => 'oeu', 'Oeu057698.1' => 'oeu', 'Os01g0680700' => 'osa', 'Os05g0541700' => 'osa', 'Os05g0556600' => 'osa', 'Peaxi162Scf00436g00120' => 'pax', 'Peaxi162Scf00463g00018' => 'pax', 'Peaxi162Scf00705g00312' => 'pax', 'PGR042G0242' => 'pgr', 'PGR044G0779' => 'pgr', 'PGR119G1054' => 'pgr', 'PGSC0003DMG400013825' => 'stu', 'PGSC0003DMG400032167' => 'stu', 'Phvul.001G111300' => 'pvu', 'Phvul.003G274400' => 'pvu', 'Phvul.009G075900' => 'pvu', 'Potri.001G004000' => 'ptr', 'Potri.001G073400' => 'ptr', 'Potri.003G157500' => 'ptr', 'Potri.003G221000' => 'ptr', 'Potri.006G233100' => 'ptr', 'Potri.013G057600' => 'ptr', 'Potri.018G059200' => 'ptr', 'Potri.019G035300' => 'ptr', 'Pp3c17_14270' => 'ppa', 'Pp3c1_33320' => 'ppa', 'Pp3c2_2700' => 'ppa', 'Pp3c5_17000' => 'ppa', 'Pp3c6_15840' => 'ppa', 'Prupe.1G415100' => 'ppe', 'Prupe.4G121700' => 'ppe', 'Prupe.6G003400' => 'ppe', 'Prupe.7G004700' => 'ppe', 'Psat4g112440' => 'psa', 'Psat6g018840' => 'psa', 'Psat6g151920' => 'psa', 'PSO063G1120' => 'pso', 'PSO339G3326' => 'pso', 'PSO384G0980' => 'pso', 'PSO832G1989' => 'pso', 'QL01p009060' => 'qlo', 'QL02p001657' => 'qlo', 'QL07p018365' => 'qlo', 'QL11p010646' => 'qlo', 'RcHm_v2.0_Chr5g0022171' => 'rch', 'RcHm_v2.0_Chr5g0083771' => 'rch', 'RcHm_v2.0_Chr6g0310471' => 'rch', 'Rhsim09G0033500' => 'rsi', 'Rhsim11G0047300' => 'rsi', 'Sabra01G0002700' => 'sbr', 'Sabra03G0114200' => 'sbr', 'Sabra03G0164500' => 'sbr', 'Sabra06G0181600' => 'sbr', 'Sabra06G0181700' => 'sbr', 'Sabra13G0051300' => 'sbr', 'Sabra18G0050200' => 'sbr', 'Sabra19G0043800' => 'sbr', 'Sabra19G0047100' => 'sbr', 'SalBow1G0862' => 'sbo', 'SalBow4G2002' => 'sbo', 'Sc05g0005600' => 'sci', 'Sc09g0009650' => 'sci', 'Sc13g0002660' => 'sci', 'Sed0000349' => 'sed', 'Sed0009703' => 'sed', 'Sed0010726' => 'sed', 'Sed0018755' => 'sed', 'Sed0022728' => 'sed', 'Sed0028161' => 'sed', 'SEGI_05304' => 'sgi', 'SEGI_05342' => 'sgi', 'SEGI_05736' => 'sgi', 'SEGI_06078' => 'sgi', 'SEGI_11986' => 'sgi', 'SEGI_15756' => 'sgi', 'SEGI_34399' => 'sgi', 'SEGI_40027' => 'sgi', 'SEGI_40545' => 'sgi', 'SGA_v2.0_scaffold163G38039' => 'sas', 'SGA_v2.0_scaffold169G38680' => 'sas', 'SGA_v2.0_scaffold6G03307' => 'sas', 'SMO118G0421' => 'smo', 'Solyc01g005570.4' => 'sly', 'Solyc01g005580.2' => 'sly', 'Solyc08g065840.3' => 'sly', 'Sopen01g001600' => 'spe', 'Sopen01g001610' => 'spe', 'Sopen08g019540' => 'spe', 'Sp1g41020' => 'spa', 'Sp2g09410' => 'spa', 'Sp3g02850' => 'spa', 'TAR084G0004' => 'tar', 'TAR369G0034' => 'tar', 'TAR374G0078' => 'tar', 'TAR374G0322' => 'tar', 'TAR383G0608' => 'tar', 'TAR623G0230' => 'tar', 'TAR624G0555' => 'tar', 'TAR625G0451' => 'tar', 'TAR626G0864' => 'tar', 'TAR633G0754' => 'tar', 'THA.LOC104799179' => 'tha', 'THA.LOC104806233' => 'tha', 'THA.LOC104810326' => 'tha', 'THA.LOC104811967' => 'tha', 'THA.LOC104812927' => 'tha', 'Thecc.02G000400' => 'tca', 'Thecc.05G250200' => 'tca', 'Thecc.09G050800' => 'tca', 'Thecc.09G199800' => 'tca', 'Thhalv10000929m.g' => 'esa', 'Thhalv10011785m.g' => 'esa', 'Thhalv10025632m.g' => 'esa', 'TPR.G13008' => 'tpr', 'TPR.G19828' => 'tpr', 'TPR.G5908' => 'tpr', 'TWI32G0013' => 'twi', 'TWI34G0225' => 'twi', 'TWI34G0691' => 'twi', 'TWI34G0951' => 'twi', 'TWI38G0460' => 'twi', 'TWI60G0252' => 'twi', 'TWI60G1374' => 'twi', 'TWI63G1359' => 'twi', 'TWI63G1836' => 'twi', 'unitig_52.g17517' => 'ugi', 'vmacro00167' => 'vma', 'vmacro12565' => 'vma', 'vmacro12600' => 'vma', 'VMungo0251G1051' => 'vmu', 'VMungo0647G2216' => 'vmu', 'VMungo1309G0835' => 'vmu', 'VMungo1383G3028' => 'vmu', 'Zm00001eb043840' => 'zma', 'Zm00001eb044570' => 'zma', 'Zm00001eb061640' => 'zma', 'Zm00001eb065830' => 'zma', 'Zm00001eb112230' => 'zma', 'Zm00001eb142900' => 'zma', 'Zm00001eb156700' => 'zma', 'Zm00001eb183550' => 'zma', 'Zm00001eb212530' => 'zma', 'Zm00001eb285870' => 'zma', 'Zm00001eb294400' => 'zma', 'Zm00001eb295380' => 'zma', 'Zm00001eb342360' => 'zma', 'Zm00001eb343240' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001435' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001435' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001435' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001435' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151