Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12000 Brassica napus
A05p17510 Brassica napus
A05p43510 Brassica napus
A06p00240 Brassica napus
A08p00700 Brassica napus
Aa31LG10G1140 Aethionema arabicum
Aa31LG5G14460 Aethionema arabicum
Aa31LG9G8560 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.2730 Anthoceros agrestis
Actinidia06912 Actinidia chinensis
Actinidia22081 Actinidia chinensis
Actinidia30299 Actinidia chinensis
Actinidia30551 Actinidia chinensis
Ah.08g212240 Amaranthus hybridus
Ah.11g044540 Amaranthus hybridus
Ah.13g075430 Amaranthus hybridus
Ah.15g091840 Amaranthus hybridus
AL1G63390 Arabidopsis lyrata
AL3G13770 Arabidopsis lyrata
AL7G33610 Arabidopsis lyrata
Aqoxy199s001 Aquilegia oxysepala
Aqoxy199s002 Aquilegia oxysepala
Aqoxy1G00474 Aquilegia oxysepala
Aqoxy2G00450 Aquilegia oxysepala
Aqoxy7G01333 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.B43C0Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BT0S58 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R3WVNU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z7Z6ZY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZP2KRU Arachis hypogaea
AT1G55340 Arabidopsis thaliana
AT3G03880 Arabidopsis thaliana
AT4G20300 Arabidopsis thaliana
ATR0219G009 Amborella trichopoda
ATR0737G061 Amborella trichopoda
ATR0737G062 Amborella trichopoda
ATR1125G091 Amborella trichopoda
Atru.chr2.1394 Acer truncatum
Atru.chr3.2105 Acer truncatum
Atru.chr7.2022 Acer truncatum
Atru.chr7.2023 Acer truncatum
AUR62009202 Chenopodium quinoa
AUR62032047 Chenopodium quinoa
AUR62032702 Chenopodium quinoa
AUR62040199 Chenopodium quinoa
AUR62040987 Chenopodium quinoa
AUR62042965 Chenopodium quinoa
AUR62043050 Chenopodium quinoa
BcaB02g10825 Brassica carinata
BcaB03g11667 Brassica carinata
BcaB04g16963 Brassica carinata
BcaC01g01516 Brassica carinata
BcaC05g29900 Brassica carinata
BcaC05g30246 Brassica carinata
BcaC05g30289 Brassica carinata
BcaC08g43617 Brassica carinata
BcaC08g44194 Brassica carinata
BcaC09g51323 Brassica carinata
BcaNung03719 Brassica carinata
BolC1t03504H Brassica oleracea
BolC3t20569H Brassica oleracea
BolC3t21578H Brassica oleracea
BolC5t34972H Brassica oleracea
BolC6t36108H Brassica oleracea
BolC6t36792H Brassica oleracea
BraA01t01142Z Brassica rapa
BraA05t20645Z Brassica rapa
BraA05t23091Z Brassica rapa
BraA06t23240Z Brassica rapa
BraA08t32127Z Brassica rapa
C01p35460 Brassica napus
C03p82870 Brassica napus
C03p92640 Brassica napus
C06p10320 Brassica napus
C06p15990 Brassica napus
CAN.G1327.8 Capsicum annuum
CAN.G1834.8 Capsicum annuum
CAN.G1834.9 Capsicum annuum
CANSAT11G2351 Cannabis sativa
CANSAT25G0463 Cannabis sativa
CANSAT35G0446 Cannabis sativa
CARHR045000 Cardamine hirsuta
CARHR078000 Cardamine hirsuta
CARHR178340 Cardamine hirsuta
CARHR227120 Cardamine hirsuta
Carub.0001s4385 Capsella rubella
Carub.0003s0307 Capsella rubella
Carub.0007s2088 Capsella rubella
Ca_08270_v3 Cicer arietinum L.
Ca_13182_v3 Cicer arietinum L.
Ca_22536_v3 Cicer arietinum L.
Cc01_g00060 Coffea canephora
Cc06_g23040 Coffea canephora
Cc08_g10310 Coffea canephora
Cc09_g04520 Coffea canephora
CDE02G3633 Ceratophyllum demersum
CDE02G3839 Ceratophyllum demersum
CDE05G2098 Ceratophyllum demersum
CDE09G1322 Ceratophyllum demersum
CDE10G0959 Ceratophyllum demersum
Cfa009563 Carpinus fangiana
Cfa016447 Carpinus fangiana
Cfa017930 Carpinus fangiana
Ciclev10009045m.g Citrus clementina
Ciclev10015606m.g Citrus clementina
Ciclev10016677m.g Citrus clementina
Ciclev10022079m.g Citrus clementina
CiPaw.09G141100 Carya illinoinensis
CiPaw.10G001200 Carya illinoinensis
CiPaw.10G108800 Carya illinoinensis
CiPaw.13G177000 Carya illinoinensis
CiPaw.14G136800 Carya illinoinensis
CiPaw.15G042000 Carya illinoinensis
ClCG03G014530 Citrullus lanatus
ClCG05G017720 Citrullus lanatus
ClCG08G016910 Citrullus lanatus
ClCG10G013410 Citrullus lanatus
COL.COLO4_05793 Corchorus olitorius
COL.COLO4_21025 Corchorus olitorius
COL.COLO4_25013 Corchorus olitorius
COL.COLO4_36082 Corchorus olitorius
Cpa.g.sc119.41 Carica papaya
Cpa.g.sc51.129 Carica papaya
Cpa.g.sc7.189 Carica papaya
CsaV3_1G041660 Cucumis sativus L.
CsaV3_2G025700 Cucumis sativus L.
CsaV3_3G043230 Cucumis sativus L.
CsaV3_4G035460 Cucumis sativus L.
CSS0004523 Camellia sinensis var. sinensis
CSS0005800 Camellia sinensis var. sinensis
CSS0040277 Camellia sinensis var. sinensis
CSS0047607 Camellia sinensis var. sinensis
DCAR_000780 Daucus carota
DCAR_001252 Daucus carota
DCAR_001977 Daucus carota
DCAR_004366 Daucus carota
DCAR_013684 Daucus carota
Dinv13470 Davidia involucrata
Dinv13471 Davidia involucrata
Dinv14576 Davidia involucrata
Dinv23420 Davidia involucrata
Dinv27963 Davidia involucrata
Dinv37020 Davidia involucrata
Duzib106G0585 Durio zibethinus
Duzib128G1230 Durio zibethinus
Duzib150G0044 Durio zibethinus
Duzib168G0652 Durio zibethinus
Duzib168G1233 Durio zibethinus
Duzib177G0166 Durio zibethinus
Duzib187G1149 Durio zibethinus
Duzib248G0140 Durio zibethinus
ECA233G4767 Erigeron canadensis
ECA240G2387 Erigeron canadensis
ECA248G2241 Erigeron canadensis
ECA248G3436 Erigeron canadensis
EL10Ac3g06826 Beta vulgaris
EL10Ac7g17301 Beta vulgaris
Eucgr.A02101 Eucalyptus grandis
Eucgr.C03003 Eucalyptus grandis
Eucgr.J01767 Eucalyptus grandis
FAN11G0616 Fragaria x ananassa
FAN11G2869 Fragaria x ananassa
FAN15G3292 Fragaria x ananassa
FAN16G1601 Fragaria x ananassa
FAN20G1683 Fragaria x ananassa
FAN21G0103 Fragaria x ananassa
FAN21G0155 Fragaria x ananassa
FAN24G1394 Fragaria x ananassa
FAN25G1540 Fragaria x ananassa
FAN25G3141 Fragaria x ananassa
FAN27G2292 Fragaria x ananassa
FvH4_2g32200 Fragaria vesca
FvH4_3g13430 Fragaria vesca
FvH4_3g45580 Fragaria vesca
Glyma.04G050000 Glycine max
Glyma.06G050600 Glycine max
Glyma.14G092600 Glycine max
Glyma.16G040500 Glycine max
Glyma.16G094400 Glycine max
Glyma.17G230900 Glycine max
Glyma.19G112600 Glycine max
Gohir.A03G022200 Gossypium hirsutum
Gohir.A05G044000 Gossypium hirsutum
Gohir.A07G022148 Gossypium hirsutum
Gohir.A11G235700 Gossypium hirsutum
Gohir.A13G099700 Gossypium hirsutum
Gohir.A13G099800 Gossypium hirsutum
Gohir.D01G129200 Gossypium hirsutum
Gohir.D03G146500 Gossypium hirsutum
Gohir.D05G045600 Gossypium hirsutum
Gohir.D07G023100 Gossypium hirsutum
Gohir.D11G246600 Gossypium hirsutum
Gohir.D13G103200 Gossypium hirsutum
Gorai.001G023800 Gossypium raimondii
Gorai.003G153900 Gossypium raimondii
Gorai.007G262500 Gossypium raimondii
Gorai.009G047000 Gossypium raimondii
Gorai.013G115700 Gossypium raimondii
GSVIVG01025467001 Vitis vinifera
GSVIVG01033408001 Vitis vinifera
GSVIVG01035342001 Vitis vinifera
HanXRQChr01g0021411 Helianthus annuus
HanXRQChr01g0024751 Helianthus annuus
HanXRQChr02g0054561 Helianthus annuus
HanXRQChr03g0078821 Helianthus annuus
HanXRQChr13g0410641 Helianthus annuus
HanXRQChr17g0556881 Helianthus annuus
Haze_05180 Corylus avellana
Haze_18219 Corylus avellana
Haze_18220 Corylus avellana
Haze_19425 Corylus avellana
Haze_22942 Corylus avellana
Hma1.2p1_0589F.1_g184900 Hydrangea macrophylla
Hma1.2p1_1266F.1_g271400 Hydrangea macrophylla
HPP92_006480 Vanilla planifolia
HPP92_010133 Vanilla planifolia
HPP92_015920 Vanilla planifolia
HPP92_015935 Vanilla planifolia
Hund03362 Selenicereus undatus
Hund19477 Selenicereus undatus
Hund20139 Selenicereus undatus
Lalb_Chr08g0245121 Lupinus albus
Lalb_Chr11g0063081 Lupinus albus
Lalb_Chr11g0063091 Lupinus albus
Lalb_Chr14g0364541 Lupinus albus
Lalb_Chr14g0367871 Lupinus albus
Lalb_Chr22g0355981 Lupinus albus
Lalb_Chr22g0359121 Lupinus albus
Lj1A522G59 Lonicera japonica
Lj1A523G15 Lonicera japonica
Lj1C1136T11 Lonicera japonica
Lj1C1153G5 Lonicera japonica
Lj1g0008729 Lotus japonicus
Lj1g0027715 Lotus japonicus
Lj4g0016461 Lotus japonicus
Lj7A282T45 Lonicera japonica
Lsat_1_v5_gn_1_59781 Lactuca sativa
Lsat_1_v5_gn_1_68841 Lactuca sativa
Lsat_1_v5_gn_5_44541 Lactuca sativa
Lsat_1_v5_gn_6_37381 Lactuca sativa
Manes.03G046400 Manihot esculenta
Manes.03G087603 Manihot esculenta
Manes.08G144800 Manihot esculenta
Manes.09G140800 Manihot esculenta
Manes.15G109000 Manihot esculenta
Manes.16G077700 Manihot esculenta
Mapoly0028s0111 Marchantia polymorpha
MapolyY_B0003 Marchantia polymorpha
MBI01_g13089_MAGBIO Magnolia biondii
MBI01_g16590_MAGBIO Magnolia biondii
MBI04_g38352_MAGBIO Magnolia biondii
MBI06_g30437_MAGBIO Magnolia biondii
MBI06_g47202_MAGBIO Magnolia biondii
MBI07_g10932_MAGBIO Magnolia biondii
MD03G1003700 Malus domestica
MD05G1241700 Malus domestica
MD08G1073700 Malus domestica
MD10G1223600 Malus domestica
MD11G1003600 Malus domestica
MD12G1004100 Malus domestica
MD12G1004300 Malus domestica
MD14G1003000 Malus domestica
Medtr1g016800 Medicago truncatula
Medtr7g085680 Medicago truncatula
Medtr8g070650 Medicago truncatula
MELO3C010764.2 Cucumis melo
MELO3C015579.2 Cucumis melo
MELO3C016856.2 Cucumis melo
MELO3C026883.2 Cucumis melo
Migut.A00156 Erythranthe guttata
Migut.E01554 Erythranthe guttata
Migut.N00555 Erythranthe guttata
MSTRG.11673 Avicennia marina
MSTRG.14044 Avicennia marina
MSTRG.18024 Avicennia marina
MSTRG.25937 Avicennia marina
Nitab4.5_0000359g0180 Nicotiana tabacum
Nitab4.5_0000551g0150 Nicotiana tabacum
Nitab4.5_0000626g0020 Nicotiana tabacum
Nitab4.5_0006311g0010 Nicotiana tabacum
Nitab4.5_0011070g0020 Nicotiana tabacum
Nitab4.5_0026702g0010 Nicotiana tabacum
Nn2g12309 Nelumbo nucifera
Nn2g15858 Nelumbo nucifera
Nn3g21962 Nelumbo nucifera
Nn4g26653 Nelumbo nucifera
Nn6g35391 Nelumbo nucifera
Nn7g35863 Nelumbo nucifera
Oeu023701.1 Olea europaea
Oeu023951.1 Olea europaea
Oeu029403.1 Olea europaea
Oeu036352.1 Olea europaea
Oeu057698.1 Olea europaea
Os01g0680700 Oryza sativa ssp. japonica
Os05g0541700 Oryza sativa ssp. japonica
Os05g0556600 Oryza sativa ssp. japonica
Peaxi162Scf00436g00120 Petunia axillaris
Peaxi162Scf00463g00018 Petunia axillaris
Peaxi162Scf00705g00312 Petunia axillaris
PGR042G0242 Punica granatum
PGR044G0779 Punica granatum
PGR119G1054 Punica granatum
PGSC0003DMG400013825 Solanum tuberosum
PGSC0003DMG400032167 Solanum tuberosum
Phvul.001G111300 Phaseolus vulgaris
Phvul.003G274400 Phaseolus vulgaris
Phvul.009G075900 Phaseolus vulgaris
Potri.001G004000 Populus trichocarpa
Potri.001G073400 Populus trichocarpa
Potri.003G157500 Populus trichocarpa
Potri.003G221000 Populus trichocarpa
Potri.006G233100 Populus trichocarpa
Potri.013G057600 Populus trichocarpa
Potri.018G059200 Populus trichocarpa
Potri.019G035300 Populus trichocarpa
Pp3c17_14270 Physcomitrium patens
Pp3c1_33320 Physcomitrium patens
Pp3c2_2700 Physcomitrium patens
Pp3c5_17000 Physcomitrium patens
Pp3c6_15840 Physcomitrium patens
Prupe.1G415100 Prunus persica
Prupe.4G121700 Prunus persica
Prupe.6G003400 Prunus persica
Prupe.7G004700 Prunus persica
Psat4g112440 Pisum sativum
Psat6g018840 Pisum sativum
Psat6g151920 Pisum sativum
PSO063G1120 Papaver somniferum
PSO339G3326 Papaver somniferum
PSO384G0980 Papaver somniferum
PSO832G1989 Papaver somniferum
QL01p009060 Quercus lobata
QL02p001657 Quercus lobata
QL07p018365 Quercus lobata
QL11p010646 Quercus lobata
RcHm_v2.0_Chr5g0022171 Rosa chinensis
RcHm_v2.0_Chr5g0083771 Rosa chinensis
RcHm_v2.0_Chr6g0310471 Rosa chinensis
Rhsim09G0033500 Rhododendron simsii
Rhsim11G0047300 Rhododendron simsii
Sabra01G0002700 Salix brachista
Sabra03G0114200 Salix brachista
Sabra03G0164500 Salix brachista
Sabra06G0181600 Salix brachista
Sabra06G0181700 Salix brachista
Sabra13G0051300 Salix brachista
Sabra18G0050200 Salix brachista
Sabra19G0043800 Salix brachista
Sabra19G0047100 Salix brachista
SalBow1G0862 Salvia bowleyana
SalBow4G2002 Salvia bowleyana
Sc05g0005600 Simmondsia chinensis
Sc09g0009650 Simmondsia chinensis
Sc13g0002660 Simmondsia chinensis
Sed0000349 Sechium edule
Sed0009703 Sechium edule
Sed0010726 Sechium edule
Sed0018755 Sechium edule
Sed0022728 Sechium edule
Sed0028161 Sechium edule
SEGI_05304 Sequoiadendron giganteum
SEGI_05342 Sequoiadendron giganteum
SEGI_05736 Sequoiadendron giganteum
SEGI_06078 Sequoiadendron giganteum
SEGI_11986 Sequoiadendron giganteum
SEGI_15756 Sequoiadendron giganteum
SEGI_34399 Sequoiadendron giganteum
SEGI_40027 Sequoiadendron giganteum
SEGI_40545 Sequoiadendron giganteum
SGA_v2.0_scaffold163G38039 Striga asiatica
SGA_v2.0_scaffold169G38680 Striga asiatica
SGA_v2.0_scaffold6G03307 Striga asiatica
SMO118G0421 Selaginella moellendorffii
Solyc01g005570.4 Solanum lycopersicum
Solyc01g005580.2 Solanum lycopersicum
Solyc08g065840.3 Solanum lycopersicum
Sopen01g001600 Solanum pennellii
Sopen01g001610 Solanum pennellii
Sopen08g019540 Solanum pennellii
Sp1g41020 Schrenkiella parvula
Sp2g09410 Schrenkiella parvula
Sp3g02850 Schrenkiella parvula
TAR084G0004 Trochodendron aralioides
TAR369G0034 Trochodendron aralioides
TAR374G0078 Trochodendron aralioides
TAR374G0322 Trochodendron aralioides
TAR383G0608 Trochodendron aralioides
TAR623G0230 Trochodendron aralioides
TAR624G0555 Trochodendron aralioides
TAR625G0451 Trochodendron aralioides
TAR626G0864 Trochodendron aralioides
TAR633G0754 Trochodendron aralioides
THA.LOC104799179 Tarenaya hassleriana
THA.LOC104806233 Tarenaya hassleriana
THA.LOC104810326 Tarenaya hassleriana
THA.LOC104811967 Tarenaya hassleriana
THA.LOC104812927 Tarenaya hassleriana
Thecc.02G000400 Theobroma cacao
Thecc.05G250200 Theobroma cacao
Thecc.09G050800 Theobroma cacao
Thecc.09G199800 Theobroma cacao
Thhalv10000929m.g Eutrema salsugineum
Thhalv10011785m.g Eutrema salsugineum
Thhalv10025632m.g Eutrema salsugineum
TPR.G13008 Trifolium pratense
TPR.G19828 Trifolium pratense
TPR.G5908 Trifolium pratense
TWI32G0013 Tripterygium wilfordii
TWI34G0225 Tripterygium wilfordii
TWI34G0691 Tripterygium wilfordii
TWI34G0951 Tripterygium wilfordii
TWI38G0460 Tripterygium wilfordii
TWI60G0252 Tripterygium wilfordii
TWI60G1374 Tripterygium wilfordii
TWI63G1359 Tripterygium wilfordii
TWI63G1836 Tripterygium wilfordii
unitig_52.g17517 Utricularia gibba
vmacro00167 Vaccinium macrocarpon
vmacro12565 Vaccinium macrocarpon
vmacro12600 Vaccinium macrocarpon
VMungo0251G1051 Vigna mungo
VMungo0647G2216 Vigna mungo
VMungo1309G0835 Vigna mungo
VMungo1383G3028 Vigna mungo
Zm00001eb043840 Zea mays
Zm00001eb044570 Zea mays
Zm00001eb061640 Zea mays
Zm00001eb065830 Zea mays
Zm00001eb112230 Zea mays
Zm00001eb142900 Zea mays
Zm00001eb156700 Zea mays
Zm00001eb183550 Zea mays
Zm00001eb212530 Zea mays
Zm00001eb285870 Zea mays
Zm00001eb294400 Zea mays
Zm00001eb295380 Zea mays
Zm00001eb342360 Zea mays
Zm00001eb343240 Zea mays

User provided reference genes

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