Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001415', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '444', 'num_species' => '80' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39330' => 'bna', 'A03p20360' => 'bna', 'A03p38770' => 'bna', 'A04p04410' => 'bna', 'A04p28260' => 'bna', 'A04p30340' => 'bna', 'A05p06700' => 'bna', 'A05p08830' => 'bna', 'A05p35030' => 'bna', 'A07p21460' => 'bna', 'A08p01440' => 'bna', 'A09p46240' => 'bna', 'A09p48520' => 'bna', 'A10p06020' => 'bna', 'Aa31LG5G22210' => 'aar', 'Actinidia02936' => 'ach', 'Ah.08g211680' => 'amhyb', 'Ah.08g219870' => 'amhyb', 'Ah.15g098480' => 'amhyb', 'AL1G62400' => 'aly', 'AL3G26700' => 'aly', 'AL4G23680' => 'aly', 'AL4G33230' => 'aly', 'AL4G37150' => 'aly', 'AL5G34120' => 'aly', 'AL5G36670' => 'aly', 'Aqoxy2G02269' => 'aox', 'Aqoxy7G04200' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CC2P36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6EZ89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7ANH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2C0P1' => 'arhy', 'AT1G53708' => 'ath', 'AT2G29125' => 'ath', 'AT2G36985' => 'ath', 'AT2G39705' => 'ath', 'AT3G14362' => 'ath', 'AT3G53232' => 'ath', 'AT3G55515' => 'ath', 'ATR0626G034' => 'atr', 'Atru.chr1.4181' => 'acertr', 'Atru.chr12.418' => 'acertr', 'Atru.chr3.3969' => 'acertr', 'BcaB01g00087' => 'bca', 'BcaB01g00298' => 'bca', 'BcaB01g00299' => 'bca', 'BcaB01g03804' => 'bca', 'BcaB02g08412' => 'bca', 'BcaB02g08413' => 'bca', 'BcaB02g09096' => 'bca', 'BcaB02g09311' => 'bca', 'BcaB06g28285' => 'bca', 'BcaB06g28286' => 'bca', 'BcaB06g28964' => 'bca', 'BcaB06g29109' => 'bca', 'BcaC01g05622' => 'bca', 'BcaC02g07426' => 'bca', 'BcaC02g07562' => 'bca', 'BcaC02g07563' => 'bca', 'BcaC02g07564' => 'bca', 'BcaC02g07565' => 'bca', 'BcaC02g08109' => 'bca', 'BcaC02g09763' => 'bca', 'BcaC02g11823' => 'bca', 'BcaC02g11824' => 'bca', 'BcaC02g12100' => 'bca', 'BcaC07g39683' => 'bca', 'BcaC07g39877' => 'bca', 'BcaC07g41995' => 'bca', 'BolC1t04969H' => 'bol', 'BolC3t14783H' => 'bol', 'BolC3t16958H' => 'bol', 'BolC3t21494H' => 'bol', 'BolC4t22402H' => 'bol', 'BolC4t22690H' => 'bol', 'BolC4t25114H' => 'bol', 'BolC4t28054H' => 'bol', 'BolC4t28246H' => 'bol', 'BolC5t33977H' => 'bol', 'BolC6t36025H' => 'bol', 'BolC8t50454H' => 'bol', 'BolC8t50708H' => 'bol', 'BolC8t52582H' => 'bol', 'BraA01t03976Z' => 'bra', 'BraA03t11281Z' => 'bra', 'BraA03t13025Z' => 'bra', 'BraA04t16154Z' => 'bra', 'BraA04t18474Z' => 'bra', 'BraA05t19637Z' => 'bra', 'BraA05t19850Z' => 'bra', 'BraA05t22317Z' => 'bra', 'BraA07t29833Z' => 'bra', 'BraA08t32195Z' => 'bra', 'BraA09t40087Z' => 'bra', 'BraA09t40304Z' => 'bra', 'BraA10t42864Z' => 'bra', 'C01p50150' => 'bna', 'C03p23940' => 'bna', 'C04p07830' => 'bna', 'C04p10960' => 'bna', 'C04p36850' => 'bna', 'C04p65620' => 'bna', 'C04p67490' => 'bna', 'C05p52990' => 'bna', 'C08p28460' => 'bna', 'C08p30820' => 'bna', 'C08p50550' => 'bna', 'CAN.G1366.20' => 'can', 'CAN.G790.46' => 'can', 'CAN.G900.45' => 'can', 'CANSAT54G2158' => 'cansat', 'CANSAT56G0089' => 'cansat', 'CANSAT56G2970' => 'cansat', 'CANSAT80G1980' => 'cansat', 'CARHR089420' => 'chi', 'CARHR134540' => 'chi', 'CARHR163060' => 'chi', 'CARHR165570' => 'chi', 'Carub.0001s4298' => 'cru', 'Carub.0003s1407' => 'cru', 'Carub.0004s1883' => 'cru', 'Carub.0004s2175' => 'cru', 'Carub.0005s1977' => 'cru', 'Carub.0005s2224' => 'cru', 'Ca_05883_v3' => 'car', 'Ca_23470_v3' => 'car', 'Cc01_g13180' => 'ccan', 'Cc02_g07600' => 'ccan', 'Cfa001452' => 'cfa', 'Cfa011527' => 'cfa', 'Ciclev10030229m.g' => 'ccl', 'Ciclev10033183m.g' => 'ccl', 'CiPaw.01G210100' => 'cil', 'CiPaw.01G269600' => 'cil', 'CiPaw.01G289500' => 'cil', 'CiPaw.02G172500' => 'cil', 'CiPaw.02G185400' => 'cil', 'CiPaw.10G130800' => 'cil', 'CiPaw.13G091000' => 'cil', 'CiPaw.14G067100' => 'cil', 'ClCG02G019980' => 'cla', 'ClCG03G001360' => 'cla', 'ClCG04G009250' => 'cla', 'ClCG07G003480' => 'cla', 'ClCG08G007660' => 'cla', 'ClCG09G019600' => 'cla', 'COL.COLO4_17147' => 'col', 'COL.COLO4_18559' => 'col', 'COL.COLO4_26977' => 'col', 'COL.COLO4_30888' => 'col', 'Cpa.g.sc157.2' => 'cpa', 'Cpa.g.sc81.113' => 'cpa', 'CsaV3_1G034460' => 'csa', 'CsaV3_4G003150' => 'csa', 'CsaV3_5G008210' => 'csa', 'CsaV3_5G026780' => 'csa', 'CsaV3_6G036630' => 'csa', 'CsaV3_6G039840' => 'csa', 'CsaV3_7G033880' => 'csa', 'CSS0013409' => 'camsi', 'CSS0014027' => 'camsi', 'CSS0026842' => 'camsi', 'CSS0027316' => 'camsi', 'DCAR_005958' => 'dca', 'DCAR_020825' => 'dca', 'DCAR_022634' => 'dca', 'DCAR_027603' => 'dca', 'Dinv37809' => 'din', 'Duzib114G0513' => 'dzi', 'Duzib128G0356' => 'dzi', 'Duzib128G1683' => 'dzi', 'Duzib150G0909' => 'dzi', 'Duzib168G2106' => 'dzi', 'Duzib170G0931' => 'dzi', 'Duzib192G0302' => 'dzi', 'ECA238G4842' => 'eca', 'EL10Ac7g16050' => 'bvu', 'Eucgr.J01236' => 'egr', 'FAN01G1035' => 'fan', 'FAN01G1619' => 'fan', 'FAN03G1064' => 'fan', 'FAN05G3971' => 'fan', 'FAN06G1409' => 'fan', 'FAN06G4365' => 'fan', 'FAN10G0897' => 'fan', 'FAN14G2263' => 'fan', 'FAN16G2514' => 'fan', 'Glyma.02G248900' => 'gma', 'Glyma.03G182700' => 'gma', 'Glyma.07G047000' => 'gma', 'Glyma.10G057200' => 'gma', 'Glyma.10G122700' => 'gma', 'Glyma.10G208400' => 'gma', 'Glyma.10G208500' => 'gma', 'Glyma.11G137600' => 'gma', 'Glyma.11G220000' => 'gma', 'Glyma.13G143700' => 'gma', 'Glyma.13G338000' => 'gma', 'Glyma.14G067500' => 'gma', 'Glyma.15G036400' => 'gma', 'Glyma.16G015200' => 'gma', 'Glyma.18G037400' => 'gma', 'Glyma.18G076400' => 'gma', 'Glyma.19G183200' => 'gma', 'Glyma.20G182200' => 'gma', 'Glyma.20G182300' => 'gma', 'Gohir.A04G072400' => 'ghi', 'Gohir.A05G093900' => 'ghi', 'Gohir.A05G142400' => 'ghi', 'Gohir.A05G293900' => 'ghi', 'Gohir.A05G348600' => 'ghi', 'Gohir.A05G411700' => 'ghi', 'Gohir.A06G142100' => 'ghi', 'Gohir.A09G147800' => 'ghi', 'Gohir.A10G049600' => 'ghi', 'Gohir.A10G203600' => 'ghi', 'Gohir.A10G220900' => 'ghi', 'Gohir.A11G324200' => 'ghi', 'Gohir.A13G018500' => 'ghi', 'Gohir.A13G227216' => 'ghi', 'Gohir.D04G004300' => 'ghi', 'Gohir.D04G063900' => 'ghi', 'Gohir.D04G111000' => 'ghi', 'Gohir.D05G094400' => 'ghi', 'Gohir.D05G144700' => 'ghi', 'Gohir.D05G294600' => 'ghi', 'Gohir.D06G147900' => 'ghi', 'Gohir.D09G143600' => 'ghi', 'Gohir.D10G050300' => 'ghi', 'Gohir.D10G211700' => 'ghi', 'Gohir.D10G233100' => 'ghi', 'Gohir.D11G343300' => 'ghi', 'Gohir.D13G019500' => 'ghi', 'Gohir.D13G232500' => 'ghi', 'Gorai.006G164900' => 'gra', 'Gorai.007G373400' => 'gra', 'Gorai.009G097500' => 'gra', 'Gorai.009G148600' => 'gra', 'Gorai.009G311300' => 'gra', 'Gorai.009G415100' => 'gra', 'Gorai.010G172400' => 'gra', 'Gorai.011G053800' => 'gra', 'Gorai.011G237600' => 'gra', 'Gorai.011G266700' => 'gra', 'Gorai.012G005500' => 'gra', 'Gorai.012G071500' => 'gra', 'Gorai.013G021600' => 'gra', 'Gorai.013G263300' => 'gra', 'GSVIVG01025722001' => 'vvi', 'HanXRQChr01g0010481' => 'han', 'HanXRQChr02g0053421' => 'han', 'HanXRQChr07g0201511' => 'han', 'HanXRQChr09g0250171' => 'han', 'HanXRQChr10g0312871' => 'han', 'HanXRQChr11g0327601' => 'han', 'HanXRQChr14g0454501' => 'han', 'Haze_17089' => 'cav', 'Haze_24132' => 'cav', 'Hma1.2p1_0757F.1_g213305' => 'hma', 'Hma1.2p1_0757F.1_g213310' => 'hma', 'Hma1.2p1_0998F.1_g246100' => 'hma', 'Hma1.2p1_1480F.1_g286050' => 'hma', 'HPP92_001492' => 'vpl', 'HPP92_006626' => 'vpl', 'HPP92_012600' => 'vpl', 'HPP92_018137' => 'vpl', 'HPP92_026000' => 'vpl', 'HPP92_027005' => 'vpl', 'Lalb_Chr01g0018721' => 'lal', 'Lalb_Chr02g0152101' => 'lal', 'Lalb_Chr03g0026501' => 'lal', 'Lalb_Chr04g0251121' => 'lal', 'Lalb_Chr04g0254011' => 'lal', 'Lalb_Chr10g0101041' => 'lal', 'Lalb_Chr10g0104651' => 'lal', 'Lalb_Chr15g0084661' => 'lal', 'Lalb_Chr17g0346301' => 'lal', 'Lalb_Chr18g0044821' => 'lal', 'Lalb_Chr18g0053201' => 'lal', 'Lalb_Chr19g0137921' => 'lal', 'Lalb_Chr20g0112631' => 'lal', 'Lalb_Chr25g0289021' => 'lal', 'Lj1g0014030' => 'lja', 'Lj1g0021078' => 'lja', 'Lj3g0004291' => 'lja', 'Lj3g0014912' => 'lja', 'Lj5g0008582' => 'lja', 'LjContig00141g0017499' => 'lja', 'Lsat_1_v5_gn_2_106661' => 'lsa', 'Lsat_1_v5_gn_2_118460' => 'lsa', 'Lsat_1_v5_gn_5_169241' => 'lsa', 'Lsat_1_v5_gn_6_25220' => 'lsa', 'Lsat_1_v5_gn_9_64901' => 'lsa', 'Manes.01G170700' => 'mes', 'Manes.02G130200' => 'mes', 'Manes.04G152500' => 'mes', 'Manes.07G117800' => 'mes', 'Manes.07G133164' => 'mes', 'Manes.08G009400' => 'mes', 'Manes.09G067380' => 'mes', 'Manes.10G028700' => 'mes', 'Manes.10G049900' => 'mes', 'MBI05_g29691_MAGBIO' => 'mbi', 'MBI14_g04657_MAGBIO' => 'mbi', 'MD01G1103800' => 'mdo', 'MD01G1136300' => 'mdo', 'MD03G1087500' => 'mdo', 'MD04G1094700' => 'mdo', 'MD07G1170600' => 'mdo', 'MD07G1201200' => 'mdo', 'MD09G1171200' => 'mdo', 'MD11G1096600' => 'mdo', 'MD12G1114900' => 'mdo', 'Medtr1g047840' => 'mtr', 'Medtr1g063830' => 'mtr', 'Medtr2g097570' => 'mtr', 'Medtr3g067980' => 'mtr', 'Medtr4g064520' => 'mtr', 'Medtr5g080260' => 'mtr', 'Medtr7g101850' => 'mtr', 'Medtr7g117490' => 'mtr', 'Medtr8g023610' => 'mtr', 'MELO3C019818.2' => 'cme', 'MELO3C020615.2' => 'cme', 'MELO3C021616.2' => 'cme', 'MELO3C023874.2' => 'cme', 'MELO3C024301.2' => 'cme', 'MELO3C025900.2' => 'cme', 'Migut.B01170' => 'egut', 'Migut.D00904' => 'egut', 'Migut.F01456' => 'egut', 'Migut.F01961' => 'egut', 'Migut.I01146' => 'egut', 'Migut.J00518' => 'egut', 'Migut.L01694' => 'egut', 'MSTRG.21203' => 'ama', 'Nn2g11165' => 'nnu', 'Nn2g11570' => 'nnu', 'Nn2g13402' => 'nnu', 'Nn2g13768' => 'nnu', 'Nn3g17551' => 'nnu', 'Nn6g31497' => 'nnu', 'Oeu012944.2' => 'oeu', 'Oeu045612.1' => 'oeu', 'Oeu053887.1' => 'oeu', 'Os01g0844200' => 'osa', 'Os01g0972300' => 'osa', 'Os03g0272900' => 'osa', 'Os05g0110200' => 'osa', 'Os05g0458200' => 'osa', 'Os12g0573600' => 'osa', 'PGR102G0519' => 'pgr', 'PGR119G2183' => 'pgr', 'PGSC0003DMG400006357' => 'stu', 'PGSC0003DMG400009157' => 'stu', 'Phvul.001G178700' => 'pvu', 'Phvul.001G233300' => 'pvu', 'Phvul.007G098400' => 'pvu', 'Phvul.007G098500' => 'pvu', 'Phvul.007G235700' => 'pvu', 'Phvul.008G191701' => 'pvu', 'Phvul.009G260600' => 'pvu', 'Phvul.010G121900' => 'pvu', 'Phvul.011G062700' => 'pvu', 'Phvul.L007243' => 'pvu', 'Potri.001G161200' => 'ptr', 'Potri.001G242800' => 'ptr', 'Potri.002G235101' => 'ptr', 'Potri.003G073900' => 'ptr', 'Potri.006G125600' => 'ptr', 'Potri.008G035900' => 'ptr', 'Potri.008G057800' => 'ptr', 'Potri.009G034300' => 'ptr', 'Potri.010G201700' => 'ptr', 'Potri.010G226250' => 'ptr', 'Prupe.2G209600' => 'ppe', 'Prupe.2G237800' => 'ppe', 'Prupe.3G029700' => 'ppe', 'Prupe.6G072200' => 'ppe', 'Prupe.6G233800' => 'ppe', 'Psat3g042400' => 'psa', 'PSO135G0377' => 'pso', 'PSO274G0001' => 'pso', 'PSO513G0025' => 'pso', 'QL08p060355' => 'qlo', 'RcHm_v2.0_Chr1g0362751' => 'rch', 'RcHm_v2.0_Chr1g0367921' => 'rch', 'RcHm_v2.0_Chr2g0148241' => 'rch', 'RcHm_v2.0_Chr3g0470051' => 'rch', 'RcHm_v2.0_Chr5g0065921' => 'rch', 'Rhsim01G0230800' => 'rsi', 'Rhsim03G0133500' => 'rsi', 'Sabra08G0042400' => 'sbr', 'SalBow3G1548' => 'sbo', 'SalBow6G2192' => 'sbo', 'SalBow6G6345' => 'sbo', 'SalBow7G1955' => 'sbo', 'Sc10g0001700' => 'sci', 'Sc12g0001300' => 'sci', 'Sc21g0005940' => 'sci', 'Sed0000866' => 'sed', 'Sed0002507' => 'sed', 'Sed0003934' => 'sed', 'Sed0008013' => 'sed', 'Sed0008951' => 'sed', 'Sed0009419' => 'sed', 'Sed0019804' => 'sed', 'Sed0020721' => 'sed', 'Sed0021325' => 'sed', 'Sed0022297' => 'sed', 'Sed0023003' => 'sed', 'SHI12464' => 'shi', 'Solyc06g076320.1' => 'sly', 'Sp4g21960' => 'spa', 'THA.LOC104810035' => 'tha', 'THA.LOC104810403' => 'tha', 'THA.LOC104822609' => 'tha', 'THA.LOC109116388' => 'tha', 'THA.LOC109117081' => 'tha', 'Thecc.06G132000' => 'tca', 'Thecc.09G317800' => 'tca', 'Thecc.10G036800' => 'tca', 'Thecc.10G082100' => 'tca', 'Thhalv10010948m.g' => 'esa', 'Thhalv10017695m.g' => 'esa', 'Thhalv10017949m.g' => 'esa', 'TPR.G15833' => 'tpr', 'TPR.G20214' => 'tpr', 'TPR.G23565' => 'tpr', 'TPR.G26464' => 'tpr', 'TPR.G3500' => 'tpr', 'TPR.G5599' => 'tpr', 'TPR.G9363' => 'tpr', 'TWI31G0218' => 'twi', 'TWI74G0876' => 'twi', 'TWI79G1693' => 'twi', 'unitig_746.g26724' => 'ugi', 'unitig_8.g4710' => 'ugi', 'unitig_899.g15255' => 'ugi', 'VMungo0720G3116' => 'vmu', 'Zm00001eb136340' => 'zma', 'Zm00001eb355880' => 'zma', 'Zm00001eb362230' => 'zma', 'Zm00001eb367930' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001415', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001415' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001415', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '444', 'num_species' => '80' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001415' ) ), 'genes' => array( 'A01p39330' => 'bna', 'A03p20360' => 'bna', 'A03p38770' => 'bna', 'A04p04410' => 'bna', 'A04p28260' => 'bna', 'A04p30340' => 'bna', 'A05p06700' => 'bna', 'A05p08830' => 'bna', 'A05p35030' => 'bna', 'A07p21460' => 'bna', 'A08p01440' => 'bna', 'A09p46240' => 'bna', 'A09p48520' => 'bna', 'A10p06020' => 'bna', 'Aa31LG5G22210' => 'aar', 'Actinidia02936' => 'ach', 'Ah.08g211680' => 'amhyb', 'Ah.08g219870' => 'amhyb', 'Ah.15g098480' => 'amhyb', 'AL1G62400' => 'aly', 'AL3G26700' => 'aly', 'AL4G23680' => 'aly', 'AL4G33230' => 'aly', 'AL4G37150' => 'aly', 'AL5G34120' => 'aly', 'AL5G36670' => 'aly', 'Aqoxy2G02269' => 'aox', 'Aqoxy7G04200' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CC2P36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6EZ89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7ANH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2C0P1' => 'arhy', 'AT1G53708' => 'ath', 'AT2G29125' => 'ath', 'AT2G36985' => 'ath', 'AT2G39705' => 'ath', 'AT3G14362' => 'ath', 'AT3G53232' => 'ath', 'AT3G55515' => 'ath', 'ATR0626G034' => 'atr', 'Atru.chr1.4181' => 'acertr', 'Atru.chr12.418' => 'acertr', 'Atru.chr3.3969' => 'acertr', 'BcaB01g00087' => 'bca', 'BcaB01g00298' => 'bca', 'BcaB01g00299' => 'bca', 'BcaB01g03804' => 'bca', 'BcaB02g08412' => 'bca', 'BcaB02g08413' => 'bca', 'BcaB02g09096' => 'bca', 'BcaB02g09311' => 'bca', 'BcaB06g28285' => 'bca', 'BcaB06g28286' => 'bca', 'BcaB06g28964' => 'bca', 'BcaB06g29109' => 'bca', 'BcaC01g05622' => 'bca', 'BcaC02g07426' => 'bca', 'BcaC02g07562' => 'bca', 'BcaC02g07563' => 'bca', 'BcaC02g07564' => 'bca', 'BcaC02g07565' => 'bca', 'BcaC02g08109' => 'bca', 'BcaC02g09763' => 'bca', 'BcaC02g11823' => 'bca', 'BcaC02g11824' => 'bca', 'BcaC02g12100' => 'bca', 'BcaC07g39683' => 'bca', 'BcaC07g39877' => 'bca', 'BcaC07g41995' => 'bca', 'BolC1t04969H' => 'bol', 'BolC3t14783H' => 'bol', 'BolC3t16958H' => 'bol', 'BolC3t21494H' => 'bol', 'BolC4t22402H' => 'bol', 'BolC4t22690H' => 'bol', 'BolC4t25114H' => 'bol', 'BolC4t28054H' => 'bol', 'BolC4t28246H' => 'bol', 'BolC5t33977H' => 'bol', 'BolC6t36025H' => 'bol', 'BolC8t50454H' => 'bol', 'BolC8t50708H' => 'bol', 'BolC8t52582H' => 'bol', 'BraA01t03976Z' => 'bra', 'BraA03t11281Z' => 'bra', 'BraA03t13025Z' => 'bra', 'BraA04t16154Z' => 'bra', 'BraA04t18474Z' => 'bra', 'BraA05t19637Z' => 'bra', 'BraA05t19850Z' => 'bra', 'BraA05t22317Z' => 'bra', 'BraA07t29833Z' => 'bra', 'BraA08t32195Z' => 'bra', 'BraA09t40087Z' => 'bra', 'BraA09t40304Z' => 'bra', 'BraA10t42864Z' => 'bra', 'C01p50150' => 'bna', 'C03p23940' => 'bna', 'C04p07830' => 'bna', 'C04p10960' => 'bna', 'C04p36850' => 'bna', 'C04p65620' => 'bna', 'C04p67490' => 'bna', 'C05p52990' => 'bna', 'C08p28460' => 'bna', 'C08p30820' => 'bna', 'C08p50550' => 'bna', 'CAN.G1366.20' => 'can', 'CAN.G790.46' => 'can', 'CAN.G900.45' => 'can', 'CANSAT54G2158' => 'cansat', 'CANSAT56G0089' => 'cansat', 'CANSAT56G2970' => 'cansat', 'CANSAT80G1980' => 'cansat', 'CARHR089420' => 'chi', 'CARHR134540' => 'chi', 'CARHR163060' => 'chi', 'CARHR165570' => 'chi', 'Carub.0001s4298' => 'cru', 'Carub.0003s1407' => 'cru', 'Carub.0004s1883' => 'cru', 'Carub.0004s2175' => 'cru', 'Carub.0005s1977' => 'cru', 'Carub.0005s2224' => 'cru', 'Ca_05883_v3' => 'car', 'Ca_23470_v3' => 'car', 'Cc01_g13180' => 'ccan', 'Cc02_g07600' => 'ccan', 'Cfa001452' => 'cfa', 'Cfa011527' => 'cfa', 'Ciclev10030229m.g' => 'ccl', 'Ciclev10033183m.g' => 'ccl', 'CiPaw.01G210100' => 'cil', 'CiPaw.01G269600' => 'cil', 'CiPaw.01G289500' => 'cil', 'CiPaw.02G172500' => 'cil', 'CiPaw.02G185400' => 'cil', 'CiPaw.10G130800' => 'cil', 'CiPaw.13G091000' => 'cil', 'CiPaw.14G067100' => 'cil', 'ClCG02G019980' => 'cla', 'ClCG03G001360' => 'cla', 'ClCG04G009250' => 'cla', 'ClCG07G003480' => 'cla', 'ClCG08G007660' => 'cla', 'ClCG09G019600' => 'cla', 'COL.COLO4_17147' => 'col', 'COL.COLO4_18559' => 'col', 'COL.COLO4_26977' => 'col', 'COL.COLO4_30888' => 'col', 'Cpa.g.sc157.2' => 'cpa', 'Cpa.g.sc81.113' => 'cpa', 'CsaV3_1G034460' => 'csa', 'CsaV3_4G003150' => 'csa', 'CsaV3_5G008210' => 'csa', 'CsaV3_5G026780' => 'csa', 'CsaV3_6G036630' => 'csa', 'CsaV3_6G039840' => 'csa', 'CsaV3_7G033880' => 'csa', 'CSS0013409' => 'camsi', 'CSS0014027' => 'camsi', 'CSS0026842' => 'camsi', 'CSS0027316' => 'camsi', 'DCAR_005958' => 'dca', 'DCAR_020825' => 'dca', 'DCAR_022634' => 'dca', 'DCAR_027603' => 'dca', 'Dinv37809' => 'din', 'Duzib114G0513' => 'dzi', 'Duzib128G0356' => 'dzi', 'Duzib128G1683' => 'dzi', 'Duzib150G0909' => 'dzi', 'Duzib168G2106' => 'dzi', 'Duzib170G0931' => 'dzi', 'Duzib192G0302' => 'dzi', 'ECA238G4842' => 'eca', 'EL10Ac7g16050' => 'bvu', 'Eucgr.J01236' => 'egr', 'FAN01G1035' => 'fan', 'FAN01G1619' => 'fan', 'FAN03G1064' => 'fan', 'FAN05G3971' => 'fan', 'FAN06G1409' => 'fan', 'FAN06G4365' => 'fan', 'FAN10G0897' => 'fan', 'FAN14G2263' => 'fan', 'FAN16G2514' => 'fan', 'Glyma.02G248900' => 'gma', 'Glyma.03G182700' => 'gma', 'Glyma.07G047000' => 'gma', 'Glyma.10G057200' => 'gma', 'Glyma.10G122700' => 'gma', 'Glyma.10G208400' => 'gma', 'Glyma.10G208500' => 'gma', 'Glyma.11G137600' => 'gma', 'Glyma.11G220000' => 'gma', 'Glyma.13G143700' => 'gma', 'Glyma.13G338000' => 'gma', 'Glyma.14G067500' => 'gma', 'Glyma.15G036400' => 'gma', 'Glyma.16G015200' => 'gma', 'Glyma.18G037400' => 'gma', 'Glyma.18G076400' => 'gma', 'Glyma.19G183200' => 'gma', 'Glyma.20G182200' => 'gma', 'Glyma.20G182300' => 'gma', 'Gohir.A04G072400' => 'ghi', 'Gohir.A05G093900' => 'ghi', 'Gohir.A05G142400' => 'ghi', 'Gohir.A05G293900' => 'ghi', 'Gohir.A05G348600' => 'ghi', 'Gohir.A05G411700' => 'ghi', 'Gohir.A06G142100' => 'ghi', 'Gohir.A09G147800' => 'ghi', 'Gohir.A10G049600' => 'ghi', 'Gohir.A10G203600' => 'ghi', 'Gohir.A10G220900' => 'ghi', 'Gohir.A11G324200' => 'ghi', 'Gohir.A13G018500' => 'ghi', 'Gohir.A13G227216' => 'ghi', 'Gohir.D04G004300' => 'ghi', 'Gohir.D04G063900' => 'ghi', 'Gohir.D04G111000' => 'ghi', 'Gohir.D05G094400' => 'ghi', 'Gohir.D05G144700' => 'ghi', 'Gohir.D05G294600' => 'ghi', 'Gohir.D06G147900' => 'ghi', 'Gohir.D09G143600' => 'ghi', 'Gohir.D10G050300' => 'ghi', 'Gohir.D10G211700' => 'ghi', 'Gohir.D10G233100' => 'ghi', 'Gohir.D11G343300' => 'ghi', 'Gohir.D13G019500' => 'ghi', 'Gohir.D13G232500' => 'ghi', 'Gorai.006G164900' => 'gra', 'Gorai.007G373400' => 'gra', 'Gorai.009G097500' => 'gra', 'Gorai.009G148600' => 'gra', 'Gorai.009G311300' => 'gra', 'Gorai.009G415100' => 'gra', 'Gorai.010G172400' => 'gra', 'Gorai.011G053800' => 'gra', 'Gorai.011G237600' => 'gra', 'Gorai.011G266700' => 'gra', 'Gorai.012G005500' => 'gra', 'Gorai.012G071500' => 'gra', 'Gorai.013G021600' => 'gra', 'Gorai.013G263300' => 'gra', 'GSVIVG01025722001' => 'vvi', 'HanXRQChr01g0010481' => 'han', 'HanXRQChr02g0053421' => 'han', 'HanXRQChr07g0201511' => 'han', 'HanXRQChr09g0250171' => 'han', 'HanXRQChr10g0312871' => 'han', 'HanXRQChr11g0327601' => 'han', 'HanXRQChr14g0454501' => 'han', 'Haze_17089' => 'cav', 'Haze_24132' => 'cav', 'Hma1.2p1_0757F.1_g213305' => 'hma', 'Hma1.2p1_0757F.1_g213310' => 'hma', 'Hma1.2p1_0998F.1_g246100' => 'hma', 'Hma1.2p1_1480F.1_g286050' => 'hma', 'HPP92_001492' => 'vpl', 'HPP92_006626' => 'vpl', 'HPP92_012600' => 'vpl', 'HPP92_018137' => 'vpl', 'HPP92_026000' => 'vpl', 'HPP92_027005' => 'vpl', 'Lalb_Chr01g0018721' => 'lal', 'Lalb_Chr02g0152101' => 'lal', 'Lalb_Chr03g0026501' => 'lal', 'Lalb_Chr04g0251121' => 'lal', 'Lalb_Chr04g0254011' => 'lal', 'Lalb_Chr10g0101041' => 'lal', 'Lalb_Chr10g0104651' => 'lal', 'Lalb_Chr15g0084661' => 'lal', 'Lalb_Chr17g0346301' => 'lal', 'Lalb_Chr18g0044821' => 'lal', 'Lalb_Chr18g0053201' => 'lal', 'Lalb_Chr19g0137921' => 'lal', 'Lalb_Chr20g0112631' => 'lal', 'Lalb_Chr25g0289021' => 'lal', 'Lj1g0014030' => 'lja', 'Lj1g0021078' => 'lja', 'Lj3g0004291' => 'lja', 'Lj3g0014912' => 'lja', 'Lj5g0008582' => 'lja', 'LjContig00141g0017499' => 'lja', 'Lsat_1_v5_gn_2_106661' => 'lsa', 'Lsat_1_v5_gn_2_118460' => 'lsa', 'Lsat_1_v5_gn_5_169241' => 'lsa', 'Lsat_1_v5_gn_6_25220' => 'lsa', 'Lsat_1_v5_gn_9_64901' => 'lsa', 'Manes.01G170700' => 'mes', 'Manes.02G130200' => 'mes', 'Manes.04G152500' => 'mes', 'Manes.07G117800' => 'mes', 'Manes.07G133164' => 'mes', 'Manes.08G009400' => 'mes', 'Manes.09G067380' => 'mes', 'Manes.10G028700' => 'mes', 'Manes.10G049900' => 'mes', 'MBI05_g29691_MAGBIO' => 'mbi', 'MBI14_g04657_MAGBIO' => 'mbi', 'MD01G1103800' => 'mdo', 'MD01G1136300' => 'mdo', 'MD03G1087500' => 'mdo', 'MD04G1094700' => 'mdo', 'MD07G1170600' => 'mdo', 'MD07G1201200' => 'mdo', 'MD09G1171200' => 'mdo', 'MD11G1096600' => 'mdo', 'MD12G1114900' => 'mdo', 'Medtr1g047840' => 'mtr', 'Medtr1g063830' => 'mtr', 'Medtr2g097570' => 'mtr', 'Medtr3g067980' => 'mtr', 'Medtr4g064520' => 'mtr', 'Medtr5g080260' => 'mtr', 'Medtr7g101850' => 'mtr', 'Medtr7g117490' => 'mtr', 'Medtr8g023610' => 'mtr', 'MELO3C019818.2' => 'cme', 'MELO3C020615.2' => 'cme', 'MELO3C021616.2' => 'cme', 'MELO3C023874.2' => 'cme', 'MELO3C024301.2' => 'cme', 'MELO3C025900.2' => 'cme', 'Migut.B01170' => 'egut', 'Migut.D00904' => 'egut', 'Migut.F01456' => 'egut', 'Migut.F01961' => 'egut', 'Migut.I01146' => 'egut', 'Migut.J00518' => 'egut', 'Migut.L01694' => 'egut', 'MSTRG.21203' => 'ama', 'Nn2g11165' => 'nnu', 'Nn2g11570' => 'nnu', 'Nn2g13402' => 'nnu', 'Nn2g13768' => 'nnu', 'Nn3g17551' => 'nnu', 'Nn6g31497' => 'nnu', 'Oeu012944.2' => 'oeu', 'Oeu045612.1' => 'oeu', 'Oeu053887.1' => 'oeu', 'Os01g0844200' => 'osa', 'Os01g0972300' => 'osa', 'Os03g0272900' => 'osa', 'Os05g0110200' => 'osa', 'Os05g0458200' => 'osa', 'Os12g0573600' => 'osa', 'PGR102G0519' => 'pgr', 'PGR119G2183' => 'pgr', 'PGSC0003DMG400006357' => 'stu', 'PGSC0003DMG400009157' => 'stu', 'Phvul.001G178700' => 'pvu', 'Phvul.001G233300' => 'pvu', 'Phvul.007G098400' => 'pvu', 'Phvul.007G098500' => 'pvu', 'Phvul.007G235700' => 'pvu', 'Phvul.008G191701' => 'pvu', 'Phvul.009G260600' => 'pvu', 'Phvul.010G121900' => 'pvu', 'Phvul.011G062700' => 'pvu', 'Phvul.L007243' => 'pvu', 'Potri.001G161200' => 'ptr', 'Potri.001G242800' => 'ptr', 'Potri.002G235101' => 'ptr', 'Potri.003G073900' => 'ptr', 'Potri.006G125600' => 'ptr', 'Potri.008G035900' => 'ptr', 'Potri.008G057800' => 'ptr', 'Potri.009G034300' => 'ptr', 'Potri.010G201700' => 'ptr', 'Potri.010G226250' => 'ptr', 'Prupe.2G209600' => 'ppe', 'Prupe.2G237800' => 'ppe', 'Prupe.3G029700' => 'ppe', 'Prupe.6G072200' => 'ppe', 'Prupe.6G233800' => 'ppe', 'Psat3g042400' => 'psa', 'PSO135G0377' => 'pso', 'PSO274G0001' => 'pso', 'PSO513G0025' => 'pso', 'QL08p060355' => 'qlo', 'RcHm_v2.0_Chr1g0362751' => 'rch', 'RcHm_v2.0_Chr1g0367921' => 'rch', 'RcHm_v2.0_Chr2g0148241' => 'rch', 'RcHm_v2.0_Chr3g0470051' => 'rch', 'RcHm_v2.0_Chr5g0065921' => 'rch', 'Rhsim01G0230800' => 'rsi', 'Rhsim03G0133500' => 'rsi', 'Sabra08G0042400' => 'sbr', 'SalBow3G1548' => 'sbo', 'SalBow6G2192' => 'sbo', 'SalBow6G6345' => 'sbo', 'SalBow7G1955' => 'sbo', 'Sc10g0001700' => 'sci', 'Sc12g0001300' => 'sci', 'Sc21g0005940' => 'sci', 'Sed0000866' => 'sed', 'Sed0002507' => 'sed', 'Sed0003934' => 'sed', 'Sed0008013' => 'sed', 'Sed0008951' => 'sed', 'Sed0009419' => 'sed', 'Sed0019804' => 'sed', 'Sed0020721' => 'sed', 'Sed0021325' => 'sed', 'Sed0022297' => 'sed', 'Sed0023003' => 'sed', 'SHI12464' => 'shi', 'Solyc06g076320.1' => 'sly', 'Sp4g21960' => 'spa', 'THA.LOC104810035' => 'tha', 'THA.LOC104810403' => 'tha', 'THA.LOC104822609' => 'tha', 'THA.LOC109116388' => 'tha', 'THA.LOC109117081' => 'tha', 'Thecc.06G132000' => 'tca', 'Thecc.09G317800' => 'tca', 'Thecc.10G036800' => 'tca', 'Thecc.10G082100' => 'tca', 'Thhalv10010948m.g' => 'esa', 'Thhalv10017695m.g' => 'esa', 'Thhalv10017949m.g' => 'esa', 'TPR.G15833' => 'tpr', 'TPR.G20214' => 'tpr', 'TPR.G23565' => 'tpr', 'TPR.G26464' => 'tpr', 'TPR.G3500' => 'tpr', 'TPR.G5599' => 'tpr', 'TPR.G9363' => 'tpr', 'TWI31G0218' => 'twi', 'TWI74G0876' => 'twi', 'TWI79G1693' => 'twi', 'unitig_746.g26724' => 'ugi', 'unitig_8.g4710' => 'ugi', 'unitig_899.g15255' => 'ugi', 'VMungo0720G3116' => 'vmu', 'Zm00001eb136340' => 'zma', 'Zm00001eb355880' => 'zma', 'Zm00001eb362230' => 'zma', 'Zm00001eb367930' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001415' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001415' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001415' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001415' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001415', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '444', 'num_species' => '80' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39330' => 'bna', 'A03p20360' => 'bna', 'A03p38770' => 'bna', 'A04p04410' => 'bna', 'A04p28260' => 'bna', 'A04p30340' => 'bna', 'A05p06700' => 'bna', 'A05p08830' => 'bna', 'A05p35030' => 'bna', 'A07p21460' => 'bna', 'A08p01440' => 'bna', 'A09p46240' => 'bna', 'A09p48520' => 'bna', 'A10p06020' => 'bna', 'Aa31LG5G22210' => 'aar', 'Actinidia02936' => 'ach', 'Ah.08g211680' => 'amhyb', 'Ah.08g219870' => 'amhyb', 'Ah.15g098480' => 'amhyb', 'AL1G62400' => 'aly', 'AL3G26700' => 'aly', 'AL4G23680' => 'aly', 'AL4G33230' => 'aly', 'AL4G37150' => 'aly', 'AL5G34120' => 'aly', 'AL5G36670' => 'aly', 'Aqoxy2G02269' => 'aox', 'Aqoxy7G04200' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CC2P36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6EZ89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7ANH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2C0P1' => 'arhy', 'AT1G53708' => 'ath', 'AT2G29125' => 'ath', 'AT2G36985' => 'ath', 'AT2G39705' => 'ath', 'AT3G14362' => 'ath', 'AT3G53232' => 'ath', 'AT3G55515' => 'ath', 'ATR0626G034' => 'atr', 'Atru.chr1.4181' => 'acertr', 'Atru.chr12.418' => 'acertr', 'Atru.chr3.3969' => 'acertr', 'BcaB01g00087' => 'bca', 'BcaB01g00298' => 'bca', 'BcaB01g00299' => 'bca', 'BcaB01g03804' => 'bca', 'BcaB02g08412' => 'bca', 'BcaB02g08413' => 'bca', 'BcaB02g09096' => 'bca', 'BcaB02g09311' => 'bca', 'BcaB06g28285' => 'bca', 'BcaB06g28286' => 'bca', 'BcaB06g28964' => 'bca', 'BcaB06g29109' => 'bca', 'BcaC01g05622' => 'bca', 'BcaC02g07426' => 'bca', 'BcaC02g07562' => 'bca', 'BcaC02g07563' => 'bca', 'BcaC02g07564' => 'bca', 'BcaC02g07565' => 'bca', 'BcaC02g08109' => 'bca', 'BcaC02g09763' => 'bca', 'BcaC02g11823' => 'bca', 'BcaC02g11824' => 'bca', 'BcaC02g12100' => 'bca', 'BcaC07g39683' => 'bca', 'BcaC07g39877' => 'bca', 'BcaC07g41995' => 'bca', 'BolC1t04969H' => 'bol', 'BolC3t14783H' => 'bol', 'BolC3t16958H' => 'bol', 'BolC3t21494H' => 'bol', 'BolC4t22402H' => 'bol', 'BolC4t22690H' => 'bol', 'BolC4t25114H' => 'bol', 'BolC4t28054H' => 'bol', 'BolC4t28246H' => 'bol', 'BolC5t33977H' => 'bol', 'BolC6t36025H' => 'bol', 'BolC8t50454H' => 'bol', 'BolC8t50708H' => 'bol', 'BolC8t52582H' => 'bol', 'BraA01t03976Z' => 'bra', 'BraA03t11281Z' => 'bra', 'BraA03t13025Z' => 'bra', 'BraA04t16154Z' => 'bra', 'BraA04t18474Z' => 'bra', 'BraA05t19637Z' => 'bra', 'BraA05t19850Z' => 'bra', 'BraA05t22317Z' => 'bra', 'BraA07t29833Z' => 'bra', 'BraA08t32195Z' => 'bra', 'BraA09t40087Z' => 'bra', 'BraA09t40304Z' => 'bra', 'BraA10t42864Z' => 'bra', 'C01p50150' => 'bna', 'C03p23940' => 'bna', 'C04p07830' => 'bna', 'C04p10960' => 'bna', 'C04p36850' => 'bna', 'C04p65620' => 'bna', 'C04p67490' => 'bna', 'C05p52990' => 'bna', 'C08p28460' => 'bna', 'C08p30820' => 'bna', 'C08p50550' => 'bna', 'CAN.G1366.20' => 'can', 'CAN.G790.46' => 'can', 'CAN.G900.45' => 'can', 'CANSAT54G2158' => 'cansat', 'CANSAT56G0089' => 'cansat', 'CANSAT56G2970' => 'cansat', 'CANSAT80G1980' => 'cansat', 'CARHR089420' => 'chi', 'CARHR134540' => 'chi', 'CARHR163060' => 'chi', 'CARHR165570' => 'chi', 'Carub.0001s4298' => 'cru', 'Carub.0003s1407' => 'cru', 'Carub.0004s1883' => 'cru', 'Carub.0004s2175' => 'cru', 'Carub.0005s1977' => 'cru', 'Carub.0005s2224' => 'cru', 'Ca_05883_v3' => 'car', 'Ca_23470_v3' => 'car', 'Cc01_g13180' => 'ccan', 'Cc02_g07600' => 'ccan', 'Cfa001452' => 'cfa', 'Cfa011527' => 'cfa', 'Ciclev10030229m.g' => 'ccl', 'Ciclev10033183m.g' => 'ccl', 'CiPaw.01G210100' => 'cil', 'CiPaw.01G269600' => 'cil', 'CiPaw.01G289500' => 'cil', 'CiPaw.02G172500' => 'cil', 'CiPaw.02G185400' => 'cil', 'CiPaw.10G130800' => 'cil', 'CiPaw.13G091000' => 'cil', 'CiPaw.14G067100' => 'cil', 'ClCG02G019980' => 'cla', 'ClCG03G001360' => 'cla', 'ClCG04G009250' => 'cla', 'ClCG07G003480' => 'cla', 'ClCG08G007660' => 'cla', 'ClCG09G019600' => 'cla', 'COL.COLO4_17147' => 'col', 'COL.COLO4_18559' => 'col', 'COL.COLO4_26977' => 'col', 'COL.COLO4_30888' => 'col', 'Cpa.g.sc157.2' => 'cpa', 'Cpa.g.sc81.113' => 'cpa', 'CsaV3_1G034460' => 'csa', 'CsaV3_4G003150' => 'csa', 'CsaV3_5G008210' => 'csa', 'CsaV3_5G026780' => 'csa', 'CsaV3_6G036630' => 'csa', 'CsaV3_6G039840' => 'csa', 'CsaV3_7G033880' => 'csa', 'CSS0013409' => 'camsi', 'CSS0014027' => 'camsi', 'CSS0026842' => 'camsi', 'CSS0027316' => 'camsi', 'DCAR_005958' => 'dca', 'DCAR_020825' => 'dca', 'DCAR_022634' => 'dca', 'DCAR_027603' => 'dca', 'Dinv37809' => 'din', 'Duzib114G0513' => 'dzi', 'Duzib128G0356' => 'dzi', 'Duzib128G1683' => 'dzi', 'Duzib150G0909' => 'dzi', 'Duzib168G2106' => 'dzi', 'Duzib170G0931' => 'dzi', 'Duzib192G0302' => 'dzi', 'ECA238G4842' => 'eca', 'EL10Ac7g16050' => 'bvu', 'Eucgr.J01236' => 'egr', 'FAN01G1035' => 'fan', 'FAN01G1619' => 'fan', 'FAN03G1064' => 'fan', 'FAN05G3971' => 'fan', 'FAN06G1409' => 'fan', 'FAN06G4365' => 'fan', 'FAN10G0897' => 'fan', 'FAN14G2263' => 'fan', 'FAN16G2514' => 'fan', 'Glyma.02G248900' => 'gma', 'Glyma.03G182700' => 'gma', 'Glyma.07G047000' => 'gma', 'Glyma.10G057200' => 'gma', 'Glyma.10G122700' => 'gma', 'Glyma.10G208400' => 'gma', 'Glyma.10G208500' => 'gma', 'Glyma.11G137600' => 'gma', 'Glyma.11G220000' => 'gma', 'Glyma.13G143700' => 'gma', 'Glyma.13G338000' => 'gma', 'Glyma.14G067500' => 'gma', 'Glyma.15G036400' => 'gma', 'Glyma.16G015200' => 'gma', 'Glyma.18G037400' => 'gma', 'Glyma.18G076400' => 'gma', 'Glyma.19G183200' => 'gma', 'Glyma.20G182200' => 'gma', 'Glyma.20G182300' => 'gma', 'Gohir.A04G072400' => 'ghi', 'Gohir.A05G093900' => 'ghi', 'Gohir.A05G142400' => 'ghi', 'Gohir.A05G293900' => 'ghi', 'Gohir.A05G348600' => 'ghi', 'Gohir.A05G411700' => 'ghi', 'Gohir.A06G142100' => 'ghi', 'Gohir.A09G147800' => 'ghi', 'Gohir.A10G049600' => 'ghi', 'Gohir.A10G203600' => 'ghi', 'Gohir.A10G220900' => 'ghi', 'Gohir.A11G324200' => 'ghi', 'Gohir.A13G018500' => 'ghi', 'Gohir.A13G227216' => 'ghi', 'Gohir.D04G004300' => 'ghi', 'Gohir.D04G063900' => 'ghi', 'Gohir.D04G111000' => 'ghi', 'Gohir.D05G094400' => 'ghi', 'Gohir.D05G144700' => 'ghi', 'Gohir.D05G294600' => 'ghi', 'Gohir.D06G147900' => 'ghi', 'Gohir.D09G143600' => 'ghi', 'Gohir.D10G050300' => 'ghi', 'Gohir.D10G211700' => 'ghi', 'Gohir.D10G233100' => 'ghi', 'Gohir.D11G343300' => 'ghi', 'Gohir.D13G019500' => 'ghi', 'Gohir.D13G232500' => 'ghi', 'Gorai.006G164900' => 'gra', 'Gorai.007G373400' => 'gra', 'Gorai.009G097500' => 'gra', 'Gorai.009G148600' => 'gra', 'Gorai.009G311300' => 'gra', 'Gorai.009G415100' => 'gra', 'Gorai.010G172400' => 'gra', 'Gorai.011G053800' => 'gra', 'Gorai.011G237600' => 'gra', 'Gorai.011G266700' => 'gra', 'Gorai.012G005500' => 'gra', 'Gorai.012G071500' => 'gra', 'Gorai.013G021600' => 'gra', 'Gorai.013G263300' => 'gra', 'GSVIVG01025722001' => 'vvi', 'HanXRQChr01g0010481' => 'han', 'HanXRQChr02g0053421' => 'han', 'HanXRQChr07g0201511' => 'han', 'HanXRQChr09g0250171' => 'han', 'HanXRQChr10g0312871' => 'han', 'HanXRQChr11g0327601' => 'han', 'HanXRQChr14g0454501' => 'han', 'Haze_17089' => 'cav', 'Haze_24132' => 'cav', 'Hma1.2p1_0757F.1_g213305' => 'hma', 'Hma1.2p1_0757F.1_g213310' => 'hma', 'Hma1.2p1_0998F.1_g246100' => 'hma', 'Hma1.2p1_1480F.1_g286050' => 'hma', 'HPP92_001492' => 'vpl', 'HPP92_006626' => 'vpl', 'HPP92_012600' => 'vpl', 'HPP92_018137' => 'vpl', 'HPP92_026000' => 'vpl', 'HPP92_027005' => 'vpl', 'Lalb_Chr01g0018721' => 'lal', 'Lalb_Chr02g0152101' => 'lal', 'Lalb_Chr03g0026501' => 'lal', 'Lalb_Chr04g0251121' => 'lal', 'Lalb_Chr04g0254011' => 'lal', 'Lalb_Chr10g0101041' => 'lal', 'Lalb_Chr10g0104651' => 'lal', 'Lalb_Chr15g0084661' => 'lal', 'Lalb_Chr17g0346301' => 'lal', 'Lalb_Chr18g0044821' => 'lal', 'Lalb_Chr18g0053201' => 'lal', 'Lalb_Chr19g0137921' => 'lal', 'Lalb_Chr20g0112631' => 'lal', 'Lalb_Chr25g0289021' => 'lal', 'Lj1g0014030' => 'lja', 'Lj1g0021078' => 'lja', 'Lj3g0004291' => 'lja', 'Lj3g0014912' => 'lja', 'Lj5g0008582' => 'lja', 'LjContig00141g0017499' => 'lja', 'Lsat_1_v5_gn_2_106661' => 'lsa', 'Lsat_1_v5_gn_2_118460' => 'lsa', 'Lsat_1_v5_gn_5_169241' => 'lsa', 'Lsat_1_v5_gn_6_25220' => 'lsa', 'Lsat_1_v5_gn_9_64901' => 'lsa', 'Manes.01G170700' => 'mes', 'Manes.02G130200' => 'mes', 'Manes.04G152500' => 'mes', 'Manes.07G117800' => 'mes', 'Manes.07G133164' => 'mes', 'Manes.08G009400' => 'mes', 'Manes.09G067380' => 'mes', 'Manes.10G028700' => 'mes', 'Manes.10G049900' => 'mes', 'MBI05_g29691_MAGBIO' => 'mbi', 'MBI14_g04657_MAGBIO' => 'mbi', 'MD01G1103800' => 'mdo', 'MD01G1136300' => 'mdo', 'MD03G1087500' => 'mdo', 'MD04G1094700' => 'mdo', 'MD07G1170600' => 'mdo', 'MD07G1201200' => 'mdo', 'MD09G1171200' => 'mdo', 'MD11G1096600' => 'mdo', 'MD12G1114900' => 'mdo', 'Medtr1g047840' => 'mtr', 'Medtr1g063830' => 'mtr', 'Medtr2g097570' => 'mtr', 'Medtr3g067980' => 'mtr', 'Medtr4g064520' => 'mtr', 'Medtr5g080260' => 'mtr', 'Medtr7g101850' => 'mtr', 'Medtr7g117490' => 'mtr', 'Medtr8g023610' => 'mtr', 'MELO3C019818.2' => 'cme', 'MELO3C020615.2' => 'cme', 'MELO3C021616.2' => 'cme', 'MELO3C023874.2' => 'cme', 'MELO3C024301.2' => 'cme', 'MELO3C025900.2' => 'cme', 'Migut.B01170' => 'egut', 'Migut.D00904' => 'egut', 'Migut.F01456' => 'egut', 'Migut.F01961' => 'egut', 'Migut.I01146' => 'egut', 'Migut.J00518' => 'egut', 'Migut.L01694' => 'egut', 'MSTRG.21203' => 'ama', 'Nn2g11165' => 'nnu', 'Nn2g11570' => 'nnu', 'Nn2g13402' => 'nnu', 'Nn2g13768' => 'nnu', 'Nn3g17551' => 'nnu', 'Nn6g31497' => 'nnu', 'Oeu012944.2' => 'oeu', 'Oeu045612.1' => 'oeu', 'Oeu053887.1' => 'oeu', 'Os01g0844200' => 'osa', 'Os01g0972300' => 'osa', 'Os03g0272900' => 'osa', 'Os05g0110200' => 'osa', 'Os05g0458200' => 'osa', 'Os12g0573600' => 'osa', 'PGR102G0519' => 'pgr', 'PGR119G2183' => 'pgr', 'PGSC0003DMG400006357' => 'stu', 'PGSC0003DMG400009157' => 'stu', 'Phvul.001G178700' => 'pvu', 'Phvul.001G233300' => 'pvu', 'Phvul.007G098400' => 'pvu', 'Phvul.007G098500' => 'pvu', 'Phvul.007G235700' => 'pvu', 'Phvul.008G191701' => 'pvu', 'Phvul.009G260600' => 'pvu', 'Phvul.010G121900' => 'pvu', 'Phvul.011G062700' => 'pvu', 'Phvul.L007243' => 'pvu', 'Potri.001G161200' => 'ptr', 'Potri.001G242800' => 'ptr', 'Potri.002G235101' => 'ptr', 'Potri.003G073900' => 'ptr', 'Potri.006G125600' => 'ptr', 'Potri.008G035900' => 'ptr', 'Potri.008G057800' => 'ptr', 'Potri.009G034300' => 'ptr', 'Potri.010G201700' => 'ptr', 'Potri.010G226250' => 'ptr', 'Prupe.2G209600' => 'ppe', 'Prupe.2G237800' => 'ppe', 'Prupe.3G029700' => 'ppe', 'Prupe.6G072200' => 'ppe', 'Prupe.6G233800' => 'ppe', 'Psat3g042400' => 'psa', 'PSO135G0377' => 'pso', 'PSO274G0001' => 'pso', 'PSO513G0025' => 'pso', 'QL08p060355' => 'qlo', 'RcHm_v2.0_Chr1g0362751' => 'rch', 'RcHm_v2.0_Chr1g0367921' => 'rch', 'RcHm_v2.0_Chr2g0148241' => 'rch', 'RcHm_v2.0_Chr3g0470051' => 'rch', 'RcHm_v2.0_Chr5g0065921' => 'rch', 'Rhsim01G0230800' => 'rsi', 'Rhsim03G0133500' => 'rsi', 'Sabra08G0042400' => 'sbr', 'SalBow3G1548' => 'sbo', 'SalBow6G2192' => 'sbo', 'SalBow6G6345' => 'sbo', 'SalBow7G1955' => 'sbo', 'Sc10g0001700' => 'sci', 'Sc12g0001300' => 'sci', 'Sc21g0005940' => 'sci', 'Sed0000866' => 'sed', 'Sed0002507' => 'sed', 'Sed0003934' => 'sed', 'Sed0008013' => 'sed', 'Sed0008951' => 'sed', 'Sed0009419' => 'sed', 'Sed0019804' => 'sed', 'Sed0020721' => 'sed', 'Sed0021325' => 'sed', 'Sed0022297' => 'sed', 'Sed0023003' => 'sed', 'SHI12464' => 'shi', 'Solyc06g076320.1' => 'sly', 'Sp4g21960' => 'spa', 'THA.LOC104810035' => 'tha', 'THA.LOC104810403' => 'tha', 'THA.LOC104822609' => 'tha', 'THA.LOC109116388' => 'tha', 'THA.LOC109117081' => 'tha', 'Thecc.06G132000' => 'tca', 'Thecc.09G317800' => 'tca', 'Thecc.10G036800' => 'tca', 'Thecc.10G082100' => 'tca', 'Thhalv10010948m.g' => 'esa', 'Thhalv10017695m.g' => 'esa', 'Thhalv10017949m.g' => 'esa', 'TPR.G15833' => 'tpr', 'TPR.G20214' => 'tpr', 'TPR.G23565' => 'tpr', 'TPR.G26464' => 'tpr', 'TPR.G3500' => 'tpr', 'TPR.G5599' => 'tpr', 'TPR.G9363' => 'tpr', 'TWI31G0218' => 'twi', 'TWI74G0876' => 'twi', 'TWI79G1693' => 'twi', 'unitig_746.g26724' => 'ugi', 'unitig_8.g4710' => 'ugi', 'unitig_899.g15255' => 'ugi', 'VMungo0720G3116' => 'vmu', 'Zm00001eb136340' => 'zma', 'Zm00001eb355880' => 'zma', 'Zm00001eb362230' => 'zma', 'Zm00001eb367930' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001415', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001415' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001415', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '444', 'num_species' => '80' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001415' ) ), 'genes' => array( 'A01p39330' => 'bna', 'A03p20360' => 'bna', 'A03p38770' => 'bna', 'A04p04410' => 'bna', 'A04p28260' => 'bna', 'A04p30340' => 'bna', 'A05p06700' => 'bna', 'A05p08830' => 'bna', 'A05p35030' => 'bna', 'A07p21460' => 'bna', 'A08p01440' => 'bna', 'A09p46240' => 'bna', 'A09p48520' => 'bna', 'A10p06020' => 'bna', 'Aa31LG5G22210' => 'aar', 'Actinidia02936' => 'ach', 'Ah.08g211680' => 'amhyb', 'Ah.08g219870' => 'amhyb', 'Ah.15g098480' => 'amhyb', 'AL1G62400' => 'aly', 'AL3G26700' => 'aly', 'AL4G23680' => 'aly', 'AL4G33230' => 'aly', 'AL4G37150' => 'aly', 'AL5G34120' => 'aly', 'AL5G36670' => 'aly', 'Aqoxy2G02269' => 'aox', 'Aqoxy7G04200' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CC2P36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6EZ89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7ANH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2C0P1' => 'arhy', 'AT1G53708' => 'ath', 'AT2G29125' => 'ath', 'AT2G36985' => 'ath', 'AT2G39705' => 'ath', 'AT3G14362' => 'ath', 'AT3G53232' => 'ath', 'AT3G55515' => 'ath', 'ATR0626G034' => 'atr', 'Atru.chr1.4181' => 'acertr', 'Atru.chr12.418' => 'acertr', 'Atru.chr3.3969' => 'acertr', 'BcaB01g00087' => 'bca', 'BcaB01g00298' => 'bca', 'BcaB01g00299' => 'bca', 'BcaB01g03804' => 'bca', 'BcaB02g08412' => 'bca', 'BcaB02g08413' => 'bca', 'BcaB02g09096' => 'bca', 'BcaB02g09311' => 'bca', 'BcaB06g28285' => 'bca', 'BcaB06g28286' => 'bca', 'BcaB06g28964' => 'bca', 'BcaB06g29109' => 'bca', 'BcaC01g05622' => 'bca', 'BcaC02g07426' => 'bca', 'BcaC02g07562' => 'bca', 'BcaC02g07563' => 'bca', 'BcaC02g07564' => 'bca', 'BcaC02g07565' => 'bca', 'BcaC02g08109' => 'bca', 'BcaC02g09763' => 'bca', 'BcaC02g11823' => 'bca', 'BcaC02g11824' => 'bca', 'BcaC02g12100' => 'bca', 'BcaC07g39683' => 'bca', 'BcaC07g39877' => 'bca', 'BcaC07g41995' => 'bca', 'BolC1t04969H' => 'bol', 'BolC3t14783H' => 'bol', 'BolC3t16958H' => 'bol', 'BolC3t21494H' => 'bol', 'BolC4t22402H' => 'bol', 'BolC4t22690H' => 'bol', 'BolC4t25114H' => 'bol', 'BolC4t28054H' => 'bol', 'BolC4t28246H' => 'bol', 'BolC5t33977H' => 'bol', 'BolC6t36025H' => 'bol', 'BolC8t50454H' => 'bol', 'BolC8t50708H' => 'bol', 'BolC8t52582H' => 'bol', 'BraA01t03976Z' => 'bra', 'BraA03t11281Z' => 'bra', 'BraA03t13025Z' => 'bra', 'BraA04t16154Z' => 'bra', 'BraA04t18474Z' => 'bra', 'BraA05t19637Z' => 'bra', 'BraA05t19850Z' => 'bra', 'BraA05t22317Z' => 'bra', 'BraA07t29833Z' => 'bra', 'BraA08t32195Z' => 'bra', 'BraA09t40087Z' => 'bra', 'BraA09t40304Z' => 'bra', 'BraA10t42864Z' => 'bra', 'C01p50150' => 'bna', 'C03p23940' => 'bna', 'C04p07830' => 'bna', 'C04p10960' => 'bna', 'C04p36850' => 'bna', 'C04p65620' => 'bna', 'C04p67490' => 'bna', 'C05p52990' => 'bna', 'C08p28460' => 'bna', 'C08p30820' => 'bna', 'C08p50550' => 'bna', 'CAN.G1366.20' => 'can', 'CAN.G790.46' => 'can', 'CAN.G900.45' => 'can', 'CANSAT54G2158' => 'cansat', 'CANSAT56G0089' => 'cansat', 'CANSAT56G2970' => 'cansat', 'CANSAT80G1980' => 'cansat', 'CARHR089420' => 'chi', 'CARHR134540' => 'chi', 'CARHR163060' => 'chi', 'CARHR165570' => 'chi', 'Carub.0001s4298' => 'cru', 'Carub.0003s1407' => 'cru', 'Carub.0004s1883' => 'cru', 'Carub.0004s2175' => 'cru', 'Carub.0005s1977' => 'cru', 'Carub.0005s2224' => 'cru', 'Ca_05883_v3' => 'car', 'Ca_23470_v3' => 'car', 'Cc01_g13180' => 'ccan', 'Cc02_g07600' => 'ccan', 'Cfa001452' => 'cfa', 'Cfa011527' => 'cfa', 'Ciclev10030229m.g' => 'ccl', 'Ciclev10033183m.g' => 'ccl', 'CiPaw.01G210100' => 'cil', 'CiPaw.01G269600' => 'cil', 'CiPaw.01G289500' => 'cil', 'CiPaw.02G172500' => 'cil', 'CiPaw.02G185400' => 'cil', 'CiPaw.10G130800' => 'cil', 'CiPaw.13G091000' => 'cil', 'CiPaw.14G067100' => 'cil', 'ClCG02G019980' => 'cla', 'ClCG03G001360' => 'cla', 'ClCG04G009250' => 'cla', 'ClCG07G003480' => 'cla', 'ClCG08G007660' => 'cla', 'ClCG09G019600' => 'cla', 'COL.COLO4_17147' => 'col', 'COL.COLO4_18559' => 'col', 'COL.COLO4_26977' => 'col', 'COL.COLO4_30888' => 'col', 'Cpa.g.sc157.2' => 'cpa', 'Cpa.g.sc81.113' => 'cpa', 'CsaV3_1G034460' => 'csa', 'CsaV3_4G003150' => 'csa', 'CsaV3_5G008210' => 'csa', 'CsaV3_5G026780' => 'csa', 'CsaV3_6G036630' => 'csa', 'CsaV3_6G039840' => 'csa', 'CsaV3_7G033880' => 'csa', 'CSS0013409' => 'camsi', 'CSS0014027' => 'camsi', 'CSS0026842' => 'camsi', 'CSS0027316' => 'camsi', 'DCAR_005958' => 'dca', 'DCAR_020825' => 'dca', 'DCAR_022634' => 'dca', 'DCAR_027603' => 'dca', 'Dinv37809' => 'din', 'Duzib114G0513' => 'dzi', 'Duzib128G0356' => 'dzi', 'Duzib128G1683' => 'dzi', 'Duzib150G0909' => 'dzi', 'Duzib168G2106' => 'dzi', 'Duzib170G0931' => 'dzi', 'Duzib192G0302' => 'dzi', 'ECA238G4842' => 'eca', 'EL10Ac7g16050' => 'bvu', 'Eucgr.J01236' => 'egr', 'FAN01G1035' => 'fan', 'FAN01G1619' => 'fan', 'FAN03G1064' => 'fan', 'FAN05G3971' => 'fan', 'FAN06G1409' => 'fan', 'FAN06G4365' => 'fan', 'FAN10G0897' => 'fan', 'FAN14G2263' => 'fan', 'FAN16G2514' => 'fan', 'Glyma.02G248900' => 'gma', 'Glyma.03G182700' => 'gma', 'Glyma.07G047000' => 'gma', 'Glyma.10G057200' => 'gma', 'Glyma.10G122700' => 'gma', 'Glyma.10G208400' => 'gma', 'Glyma.10G208500' => 'gma', 'Glyma.11G137600' => 'gma', 'Glyma.11G220000' => 'gma', 'Glyma.13G143700' => 'gma', 'Glyma.13G338000' => 'gma', 'Glyma.14G067500' => 'gma', 'Glyma.15G036400' => 'gma', 'Glyma.16G015200' => 'gma', 'Glyma.18G037400' => 'gma', 'Glyma.18G076400' => 'gma', 'Glyma.19G183200' => 'gma', 'Glyma.20G182200' => 'gma', 'Glyma.20G182300' => 'gma', 'Gohir.A04G072400' => 'ghi', 'Gohir.A05G093900' => 'ghi', 'Gohir.A05G142400' => 'ghi', 'Gohir.A05G293900' => 'ghi', 'Gohir.A05G348600' => 'ghi', 'Gohir.A05G411700' => 'ghi', 'Gohir.A06G142100' => 'ghi', 'Gohir.A09G147800' => 'ghi', 'Gohir.A10G049600' => 'ghi', 'Gohir.A10G203600' => 'ghi', 'Gohir.A10G220900' => 'ghi', 'Gohir.A11G324200' => 'ghi', 'Gohir.A13G018500' => 'ghi', 'Gohir.A13G227216' => 'ghi', 'Gohir.D04G004300' => 'ghi', 'Gohir.D04G063900' => 'ghi', 'Gohir.D04G111000' => 'ghi', 'Gohir.D05G094400' => 'ghi', 'Gohir.D05G144700' => 'ghi', 'Gohir.D05G294600' => 'ghi', 'Gohir.D06G147900' => 'ghi', 'Gohir.D09G143600' => 'ghi', 'Gohir.D10G050300' => 'ghi', 'Gohir.D10G211700' => 'ghi', 'Gohir.D10G233100' => 'ghi', 'Gohir.D11G343300' => 'ghi', 'Gohir.D13G019500' => 'ghi', 'Gohir.D13G232500' => 'ghi', 'Gorai.006G164900' => 'gra', 'Gorai.007G373400' => 'gra', 'Gorai.009G097500' => 'gra', 'Gorai.009G148600' => 'gra', 'Gorai.009G311300' => 'gra', 'Gorai.009G415100' => 'gra', 'Gorai.010G172400' => 'gra', 'Gorai.011G053800' => 'gra', 'Gorai.011G237600' => 'gra', 'Gorai.011G266700' => 'gra', 'Gorai.012G005500' => 'gra', 'Gorai.012G071500' => 'gra', 'Gorai.013G021600' => 'gra', 'Gorai.013G263300' => 'gra', 'GSVIVG01025722001' => 'vvi', 'HanXRQChr01g0010481' => 'han', 'HanXRQChr02g0053421' => 'han', 'HanXRQChr07g0201511' => 'han', 'HanXRQChr09g0250171' => 'han', 'HanXRQChr10g0312871' => 'han', 'HanXRQChr11g0327601' => 'han', 'HanXRQChr14g0454501' => 'han', 'Haze_17089' => 'cav', 'Haze_24132' => 'cav', 'Hma1.2p1_0757F.1_g213305' => 'hma', 'Hma1.2p1_0757F.1_g213310' => 'hma', 'Hma1.2p1_0998F.1_g246100' => 'hma', 'Hma1.2p1_1480F.1_g286050' => 'hma', 'HPP92_001492' => 'vpl', 'HPP92_006626' => 'vpl', 'HPP92_012600' => 'vpl', 'HPP92_018137' => 'vpl', 'HPP92_026000' => 'vpl', 'HPP92_027005' => 'vpl', 'Lalb_Chr01g0018721' => 'lal', 'Lalb_Chr02g0152101' => 'lal', 'Lalb_Chr03g0026501' => 'lal', 'Lalb_Chr04g0251121' => 'lal', 'Lalb_Chr04g0254011' => 'lal', 'Lalb_Chr10g0101041' => 'lal', 'Lalb_Chr10g0104651' => 'lal', 'Lalb_Chr15g0084661' => 'lal', 'Lalb_Chr17g0346301' => 'lal', 'Lalb_Chr18g0044821' => 'lal', 'Lalb_Chr18g0053201' => 'lal', 'Lalb_Chr19g0137921' => 'lal', 'Lalb_Chr20g0112631' => 'lal', 'Lalb_Chr25g0289021' => 'lal', 'Lj1g0014030' => 'lja', 'Lj1g0021078' => 'lja', 'Lj3g0004291' => 'lja', 'Lj3g0014912' => 'lja', 'Lj5g0008582' => 'lja', 'LjContig00141g0017499' => 'lja', 'Lsat_1_v5_gn_2_106661' => 'lsa', 'Lsat_1_v5_gn_2_118460' => 'lsa', 'Lsat_1_v5_gn_5_169241' => 'lsa', 'Lsat_1_v5_gn_6_25220' => 'lsa', 'Lsat_1_v5_gn_9_64901' => 'lsa', 'Manes.01G170700' => 'mes', 'Manes.02G130200' => 'mes', 'Manes.04G152500' => 'mes', 'Manes.07G117800' => 'mes', 'Manes.07G133164' => 'mes', 'Manes.08G009400' => 'mes', 'Manes.09G067380' => 'mes', 'Manes.10G028700' => 'mes', 'Manes.10G049900' => 'mes', 'MBI05_g29691_MAGBIO' => 'mbi', 'MBI14_g04657_MAGBIO' => 'mbi', 'MD01G1103800' => 'mdo', 'MD01G1136300' => 'mdo', 'MD03G1087500' => 'mdo', 'MD04G1094700' => 'mdo', 'MD07G1170600' => 'mdo', 'MD07G1201200' => 'mdo', 'MD09G1171200' => 'mdo', 'MD11G1096600' => 'mdo', 'MD12G1114900' => 'mdo', 'Medtr1g047840' => 'mtr', 'Medtr1g063830' => 'mtr', 'Medtr2g097570' => 'mtr', 'Medtr3g067980' => 'mtr', 'Medtr4g064520' => 'mtr', 'Medtr5g080260' => 'mtr', 'Medtr7g101850' => 'mtr', 'Medtr7g117490' => 'mtr', 'Medtr8g023610' => 'mtr', 'MELO3C019818.2' => 'cme', 'MELO3C020615.2' => 'cme', 'MELO3C021616.2' => 'cme', 'MELO3C023874.2' => 'cme', 'MELO3C024301.2' => 'cme', 'MELO3C025900.2' => 'cme', 'Migut.B01170' => 'egut', 'Migut.D00904' => 'egut', 'Migut.F01456' => 'egut', 'Migut.F01961' => 'egut', 'Migut.I01146' => 'egut', 'Migut.J00518' => 'egut', 'Migut.L01694' => 'egut', 'MSTRG.21203' => 'ama', 'Nn2g11165' => 'nnu', 'Nn2g11570' => 'nnu', 'Nn2g13402' => 'nnu', 'Nn2g13768' => 'nnu', 'Nn3g17551' => 'nnu', 'Nn6g31497' => 'nnu', 'Oeu012944.2' => 'oeu', 'Oeu045612.1' => 'oeu', 'Oeu053887.1' => 'oeu', 'Os01g0844200' => 'osa', 'Os01g0972300' => 'osa', 'Os03g0272900' => 'osa', 'Os05g0110200' => 'osa', 'Os05g0458200' => 'osa', 'Os12g0573600' => 'osa', 'PGR102G0519' => 'pgr', 'PGR119G2183' => 'pgr', 'PGSC0003DMG400006357' => 'stu', 'PGSC0003DMG400009157' => 'stu', 'Phvul.001G178700' => 'pvu', 'Phvul.001G233300' => 'pvu', 'Phvul.007G098400' => 'pvu', 'Phvul.007G098500' => 'pvu', 'Phvul.007G235700' => 'pvu', 'Phvul.008G191701' => 'pvu', 'Phvul.009G260600' => 'pvu', 'Phvul.010G121900' => 'pvu', 'Phvul.011G062700' => 'pvu', 'Phvul.L007243' => 'pvu', 'Potri.001G161200' => 'ptr', 'Potri.001G242800' => 'ptr', 'Potri.002G235101' => 'ptr', 'Potri.003G073900' => 'ptr', 'Potri.006G125600' => 'ptr', 'Potri.008G035900' => 'ptr', 'Potri.008G057800' => 'ptr', 'Potri.009G034300' => 'ptr', 'Potri.010G201700' => 'ptr', 'Potri.010G226250' => 'ptr', 'Prupe.2G209600' => 'ppe', 'Prupe.2G237800' => 'ppe', 'Prupe.3G029700' => 'ppe', 'Prupe.6G072200' => 'ppe', 'Prupe.6G233800' => 'ppe', 'Psat3g042400' => 'psa', 'PSO135G0377' => 'pso', 'PSO274G0001' => 'pso', 'PSO513G0025' => 'pso', 'QL08p060355' => 'qlo', 'RcHm_v2.0_Chr1g0362751' => 'rch', 'RcHm_v2.0_Chr1g0367921' => 'rch', 'RcHm_v2.0_Chr2g0148241' => 'rch', 'RcHm_v2.0_Chr3g0470051' => 'rch', 'RcHm_v2.0_Chr5g0065921' => 'rch', 'Rhsim01G0230800' => 'rsi', 'Rhsim03G0133500' => 'rsi', 'Sabra08G0042400' => 'sbr', 'SalBow3G1548' => 'sbo', 'SalBow6G2192' => 'sbo', 'SalBow6G6345' => 'sbo', 'SalBow7G1955' => 'sbo', 'Sc10g0001700' => 'sci', 'Sc12g0001300' => 'sci', 'Sc21g0005940' => 'sci', 'Sed0000866' => 'sed', 'Sed0002507' => 'sed', 'Sed0003934' => 'sed', 'Sed0008013' => 'sed', 'Sed0008951' => 'sed', 'Sed0009419' => 'sed', 'Sed0019804' => 'sed', 'Sed0020721' => 'sed', 'Sed0021325' => 'sed', 'Sed0022297' => 'sed', 'Sed0023003' => 'sed', 'SHI12464' => 'shi', 'Solyc06g076320.1' => 'sly', 'Sp4g21960' => 'spa', 'THA.LOC104810035' => 'tha', 'THA.LOC104810403' => 'tha', 'THA.LOC104822609' => 'tha', 'THA.LOC109116388' => 'tha', 'THA.LOC109117081' => 'tha', 'Thecc.06G132000' => 'tca', 'Thecc.09G317800' => 'tca', 'Thecc.10G036800' => 'tca', 'Thecc.10G082100' => 'tca', 'Thhalv10010948m.g' => 'esa', 'Thhalv10017695m.g' => 'esa', 'Thhalv10017949m.g' => 'esa', 'TPR.G15833' => 'tpr', 'TPR.G20214' => 'tpr', 'TPR.G23565' => 'tpr', 'TPR.G26464' => 'tpr', 'TPR.G3500' => 'tpr', 'TPR.G5599' => 'tpr', 'TPR.G9363' => 'tpr', 'TWI31G0218' => 'twi', 'TWI74G0876' => 'twi', 'TWI79G1693' => 'twi', 'unitig_746.g26724' => 'ugi', 'unitig_8.g4710' => 'ugi', 'unitig_899.g15255' => 'ugi', 'VMungo0720G3116' => 'vmu', 'Zm00001eb136340' => 'zma', 'Zm00001eb355880' => 'zma', 'Zm00001eb362230' => 'zma', 'Zm00001eb367930' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001415' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001415' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001415' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001415' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001415', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '444', 'num_species' => '80' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39330' => 'bna', 'A03p20360' => 'bna', 'A03p38770' => 'bna', 'A04p04410' => 'bna', 'A04p28260' => 'bna', 'A04p30340' => 'bna', 'A05p06700' => 'bna', 'A05p08830' => 'bna', 'A05p35030' => 'bna', 'A07p21460' => 'bna', 'A08p01440' => 'bna', 'A09p46240' => 'bna', 'A09p48520' => 'bna', 'A10p06020' => 'bna', 'Aa31LG5G22210' => 'aar', 'Actinidia02936' => 'ach', 'Ah.08g211680' => 'amhyb', 'Ah.08g219870' => 'amhyb', 'Ah.15g098480' => 'amhyb', 'AL1G62400' => 'aly', 'AL3G26700' => 'aly', 'AL4G23680' => 'aly', 'AL4G33230' => 'aly', 'AL4G37150' => 'aly', 'AL5G34120' => 'aly', 'AL5G36670' => 'aly', 'Aqoxy2G02269' => 'aox', 'Aqoxy7G04200' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CC2P36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6EZ89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7ANH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2C0P1' => 'arhy', 'AT1G53708' => 'ath', 'AT2G29125' => 'ath', 'AT2G36985' => 'ath', 'AT2G39705' => 'ath', 'AT3G14362' => 'ath', 'AT3G53232' => 'ath', 'AT3G55515' => 'ath', 'ATR0626G034' => 'atr', 'Atru.chr1.4181' => 'acertr', 'Atru.chr12.418' => 'acertr', 'Atru.chr3.3969' => 'acertr', 'BcaB01g00087' => 'bca', 'BcaB01g00298' => 'bca', 'BcaB01g00299' => 'bca', 'BcaB01g03804' => 'bca', 'BcaB02g08412' => 'bca', 'BcaB02g08413' => 'bca', 'BcaB02g09096' => 'bca', 'BcaB02g09311' => 'bca', 'BcaB06g28285' => 'bca', 'BcaB06g28286' => 'bca', 'BcaB06g28964' => 'bca', 'BcaB06g29109' => 'bca', 'BcaC01g05622' => 'bca', 'BcaC02g07426' => 'bca', 'BcaC02g07562' => 'bca', 'BcaC02g07563' => 'bca', 'BcaC02g07564' => 'bca', 'BcaC02g07565' => 'bca', 'BcaC02g08109' => 'bca', 'BcaC02g09763' => 'bca', 'BcaC02g11823' => 'bca', 'BcaC02g11824' => 'bca', 'BcaC02g12100' => 'bca', 'BcaC07g39683' => 'bca', 'BcaC07g39877' => 'bca', 'BcaC07g41995' => 'bca', 'BolC1t04969H' => 'bol', 'BolC3t14783H' => 'bol', 'BolC3t16958H' => 'bol', 'BolC3t21494H' => 'bol', 'BolC4t22402H' => 'bol', 'BolC4t22690H' => 'bol', 'BolC4t25114H' => 'bol', 'BolC4t28054H' => 'bol', 'BolC4t28246H' => 'bol', 'BolC5t33977H' => 'bol', 'BolC6t36025H' => 'bol', 'BolC8t50454H' => 'bol', 'BolC8t50708H' => 'bol', 'BolC8t52582H' => 'bol', 'BraA01t03976Z' => 'bra', 'BraA03t11281Z' => 'bra', 'BraA03t13025Z' => 'bra', 'BraA04t16154Z' => 'bra', 'BraA04t18474Z' => 'bra', 'BraA05t19637Z' => 'bra', 'BraA05t19850Z' => 'bra', 'BraA05t22317Z' => 'bra', 'BraA07t29833Z' => 'bra', 'BraA08t32195Z' => 'bra', 'BraA09t40087Z' => 'bra', 'BraA09t40304Z' => 'bra', 'BraA10t42864Z' => 'bra', 'C01p50150' => 'bna', 'C03p23940' => 'bna', 'C04p07830' => 'bna', 'C04p10960' => 'bna', 'C04p36850' => 'bna', 'C04p65620' => 'bna', 'C04p67490' => 'bna', 'C05p52990' => 'bna', 'C08p28460' => 'bna', 'C08p30820' => 'bna', 'C08p50550' => 'bna', 'CAN.G1366.20' => 'can', 'CAN.G790.46' => 'can', 'CAN.G900.45' => 'can', 'CANSAT54G2158' => 'cansat', 'CANSAT56G0089' => 'cansat', 'CANSAT56G2970' => 'cansat', 'CANSAT80G1980' => 'cansat', 'CARHR089420' => 'chi', 'CARHR134540' => 'chi', 'CARHR163060' => 'chi', 'CARHR165570' => 'chi', 'Carub.0001s4298' => 'cru', 'Carub.0003s1407' => 'cru', 'Carub.0004s1883' => 'cru', 'Carub.0004s2175' => 'cru', 'Carub.0005s1977' => 'cru', 'Carub.0005s2224' => 'cru', 'Ca_05883_v3' => 'car', 'Ca_23470_v3' => 'car', 'Cc01_g13180' => 'ccan', 'Cc02_g07600' => 'ccan', 'Cfa001452' => 'cfa', 'Cfa011527' => 'cfa', 'Ciclev10030229m.g' => 'ccl', 'Ciclev10033183m.g' => 'ccl', 'CiPaw.01G210100' => 'cil', 'CiPaw.01G269600' => 'cil', 'CiPaw.01G289500' => 'cil', 'CiPaw.02G172500' => 'cil', 'CiPaw.02G185400' => 'cil', 'CiPaw.10G130800' => 'cil', 'CiPaw.13G091000' => 'cil', 'CiPaw.14G067100' => 'cil', 'ClCG02G019980' => 'cla', 'ClCG03G001360' => 'cla', 'ClCG04G009250' => 'cla', 'ClCG07G003480' => 'cla', 'ClCG08G007660' => 'cla', 'ClCG09G019600' => 'cla', 'COL.COLO4_17147' => 'col', 'COL.COLO4_18559' => 'col', 'COL.COLO4_26977' => 'col', 'COL.COLO4_30888' => 'col', 'Cpa.g.sc157.2' => 'cpa', 'Cpa.g.sc81.113' => 'cpa', 'CsaV3_1G034460' => 'csa', 'CsaV3_4G003150' => 'csa', 'CsaV3_5G008210' => 'csa', 'CsaV3_5G026780' => 'csa', 'CsaV3_6G036630' => 'csa', 'CsaV3_6G039840' => 'csa', 'CsaV3_7G033880' => 'csa', 'CSS0013409' => 'camsi', 'CSS0014027' => 'camsi', 'CSS0026842' => 'camsi', 'CSS0027316' => 'camsi', 'DCAR_005958' => 'dca', 'DCAR_020825' => 'dca', 'DCAR_022634' => 'dca', 'DCAR_027603' => 'dca', 'Dinv37809' => 'din', 'Duzib114G0513' => 'dzi', 'Duzib128G0356' => 'dzi', 'Duzib128G1683' => 'dzi', 'Duzib150G0909' => 'dzi', 'Duzib168G2106' => 'dzi', 'Duzib170G0931' => 'dzi', 'Duzib192G0302' => 'dzi', 'ECA238G4842' => 'eca', 'EL10Ac7g16050' => 'bvu', 'Eucgr.J01236' => 'egr', 'FAN01G1035' => 'fan', 'FAN01G1619' => 'fan', 'FAN03G1064' => 'fan', 'FAN05G3971' => 'fan', 'FAN06G1409' => 'fan', 'FAN06G4365' => 'fan', 'FAN10G0897' => 'fan', 'FAN14G2263' => 'fan', 'FAN16G2514' => 'fan', 'Glyma.02G248900' => 'gma', 'Glyma.03G182700' => 'gma', 'Glyma.07G047000' => 'gma', 'Glyma.10G057200' => 'gma', 'Glyma.10G122700' => 'gma', 'Glyma.10G208400' => 'gma', 'Glyma.10G208500' => 'gma', 'Glyma.11G137600' => 'gma', 'Glyma.11G220000' => 'gma', 'Glyma.13G143700' => 'gma', 'Glyma.13G338000' => 'gma', 'Glyma.14G067500' => 'gma', 'Glyma.15G036400' => 'gma', 'Glyma.16G015200' => 'gma', 'Glyma.18G037400' => 'gma', 'Glyma.18G076400' => 'gma', 'Glyma.19G183200' => 'gma', 'Glyma.20G182200' => 'gma', 'Glyma.20G182300' => 'gma', 'Gohir.A04G072400' => 'ghi', 'Gohir.A05G093900' => 'ghi', 'Gohir.A05G142400' => 'ghi', 'Gohir.A05G293900' => 'ghi', 'Gohir.A05G348600' => 'ghi', 'Gohir.A05G411700' => 'ghi', 'Gohir.A06G142100' => 'ghi', 'Gohir.A09G147800' => 'ghi', 'Gohir.A10G049600' => 'ghi', 'Gohir.A10G203600' => 'ghi', 'Gohir.A10G220900' => 'ghi', 'Gohir.A11G324200' => 'ghi', 'Gohir.A13G018500' => 'ghi', 'Gohir.A13G227216' => 'ghi', 'Gohir.D04G004300' => 'ghi', 'Gohir.D04G063900' => 'ghi', 'Gohir.D04G111000' => 'ghi', 'Gohir.D05G094400' => 'ghi', 'Gohir.D05G144700' => 'ghi', 'Gohir.D05G294600' => 'ghi', 'Gohir.D06G147900' => 'ghi', 'Gohir.D09G143600' => 'ghi', 'Gohir.D10G050300' => 'ghi', 'Gohir.D10G211700' => 'ghi', 'Gohir.D10G233100' => 'ghi', 'Gohir.D11G343300' => 'ghi', 'Gohir.D13G019500' => 'ghi', 'Gohir.D13G232500' => 'ghi', 'Gorai.006G164900' => 'gra', 'Gorai.007G373400' => 'gra', 'Gorai.009G097500' => 'gra', 'Gorai.009G148600' => 'gra', 'Gorai.009G311300' => 'gra', 'Gorai.009G415100' => 'gra', 'Gorai.010G172400' => 'gra', 'Gorai.011G053800' => 'gra', 'Gorai.011G237600' => 'gra', 'Gorai.011G266700' => 'gra', 'Gorai.012G005500' => 'gra', 'Gorai.012G071500' => 'gra', 'Gorai.013G021600' => 'gra', 'Gorai.013G263300' => 'gra', 'GSVIVG01025722001' => 'vvi', 'HanXRQChr01g0010481' => 'han', 'HanXRQChr02g0053421' => 'han', 'HanXRQChr07g0201511' => 'han', 'HanXRQChr09g0250171' => 'han', 'HanXRQChr10g0312871' => 'han', 'HanXRQChr11g0327601' => 'han', 'HanXRQChr14g0454501' => 'han', 'Haze_17089' => 'cav', 'Haze_24132' => 'cav', 'Hma1.2p1_0757F.1_g213305' => 'hma', 'Hma1.2p1_0757F.1_g213310' => 'hma', 'Hma1.2p1_0998F.1_g246100' => 'hma', 'Hma1.2p1_1480F.1_g286050' => 'hma', 'HPP92_001492' => 'vpl', 'HPP92_006626' => 'vpl', 'HPP92_012600' => 'vpl', 'HPP92_018137' => 'vpl', 'HPP92_026000' => 'vpl', 'HPP92_027005' => 'vpl', 'Lalb_Chr01g0018721' => 'lal', 'Lalb_Chr02g0152101' => 'lal', 'Lalb_Chr03g0026501' => 'lal', 'Lalb_Chr04g0251121' => 'lal', 'Lalb_Chr04g0254011' => 'lal', 'Lalb_Chr10g0101041' => 'lal', 'Lalb_Chr10g0104651' => 'lal', 'Lalb_Chr15g0084661' => 'lal', 'Lalb_Chr17g0346301' => 'lal', 'Lalb_Chr18g0044821' => 'lal', 'Lalb_Chr18g0053201' => 'lal', 'Lalb_Chr19g0137921' => 'lal', 'Lalb_Chr20g0112631' => 'lal', 'Lalb_Chr25g0289021' => 'lal', 'Lj1g0014030' => 'lja', 'Lj1g0021078' => 'lja', 'Lj3g0004291' => 'lja', 'Lj3g0014912' => 'lja', 'Lj5g0008582' => 'lja', 'LjContig00141g0017499' => 'lja', 'Lsat_1_v5_gn_2_106661' => 'lsa', 'Lsat_1_v5_gn_2_118460' => 'lsa', 'Lsat_1_v5_gn_5_169241' => 'lsa', 'Lsat_1_v5_gn_6_25220' => 'lsa', 'Lsat_1_v5_gn_9_64901' => 'lsa', 'Manes.01G170700' => 'mes', 'Manes.02G130200' => 'mes', 'Manes.04G152500' => 'mes', 'Manes.07G117800' => 'mes', 'Manes.07G133164' => 'mes', 'Manes.08G009400' => 'mes', 'Manes.09G067380' => 'mes', 'Manes.10G028700' => 'mes', 'Manes.10G049900' => 'mes', 'MBI05_g29691_MAGBIO' => 'mbi', 'MBI14_g04657_MAGBIO' => 'mbi', 'MD01G1103800' => 'mdo', 'MD01G1136300' => 'mdo', 'MD03G1087500' => 'mdo', 'MD04G1094700' => 'mdo', 'MD07G1170600' => 'mdo', 'MD07G1201200' => 'mdo', 'MD09G1171200' => 'mdo', 'MD11G1096600' => 'mdo', 'MD12G1114900' => 'mdo', 'Medtr1g047840' => 'mtr', 'Medtr1g063830' => 'mtr', 'Medtr2g097570' => 'mtr', 'Medtr3g067980' => 'mtr', 'Medtr4g064520' => 'mtr', 'Medtr5g080260' => 'mtr', 'Medtr7g101850' => 'mtr', 'Medtr7g117490' => 'mtr', 'Medtr8g023610' => 'mtr', 'MELO3C019818.2' => 'cme', 'MELO3C020615.2' => 'cme', 'MELO3C021616.2' => 'cme', 'MELO3C023874.2' => 'cme', 'MELO3C024301.2' => 'cme', 'MELO3C025900.2' => 'cme', 'Migut.B01170' => 'egut', 'Migut.D00904' => 'egut', 'Migut.F01456' => 'egut', 'Migut.F01961' => 'egut', 'Migut.I01146' => 'egut', 'Migut.J00518' => 'egut', 'Migut.L01694' => 'egut', 'MSTRG.21203' => 'ama', 'Nn2g11165' => 'nnu', 'Nn2g11570' => 'nnu', 'Nn2g13402' => 'nnu', 'Nn2g13768' => 'nnu', 'Nn3g17551' => 'nnu', 'Nn6g31497' => 'nnu', 'Oeu012944.2' => 'oeu', 'Oeu045612.1' => 'oeu', 'Oeu053887.1' => 'oeu', 'Os01g0844200' => 'osa', 'Os01g0972300' => 'osa', 'Os03g0272900' => 'osa', 'Os05g0110200' => 'osa', 'Os05g0458200' => 'osa', 'Os12g0573600' => 'osa', 'PGR102G0519' => 'pgr', 'PGR119G2183' => 'pgr', 'PGSC0003DMG400006357' => 'stu', 'PGSC0003DMG400009157' => 'stu', 'Phvul.001G178700' => 'pvu', 'Phvul.001G233300' => 'pvu', 'Phvul.007G098400' => 'pvu', 'Phvul.007G098500' => 'pvu', 'Phvul.007G235700' => 'pvu', 'Phvul.008G191701' => 'pvu', 'Phvul.009G260600' => 'pvu', 'Phvul.010G121900' => 'pvu', 'Phvul.011G062700' => 'pvu', 'Phvul.L007243' => 'pvu', 'Potri.001G161200' => 'ptr', 'Potri.001G242800' => 'ptr', 'Potri.002G235101' => 'ptr', 'Potri.003G073900' => 'ptr', 'Potri.006G125600' => 'ptr', 'Potri.008G035900' => 'ptr', 'Potri.008G057800' => 'ptr', 'Potri.009G034300' => 'ptr', 'Potri.010G201700' => 'ptr', 'Potri.010G226250' => 'ptr', 'Prupe.2G209600' => 'ppe', 'Prupe.2G237800' => 'ppe', 'Prupe.3G029700' => 'ppe', 'Prupe.6G072200' => 'ppe', 'Prupe.6G233800' => 'ppe', 'Psat3g042400' => 'psa', 'PSO135G0377' => 'pso', 'PSO274G0001' => 'pso', 'PSO513G0025' => 'pso', 'QL08p060355' => 'qlo', 'RcHm_v2.0_Chr1g0362751' => 'rch', 'RcHm_v2.0_Chr1g0367921' => 'rch', 'RcHm_v2.0_Chr2g0148241' => 'rch', 'RcHm_v2.0_Chr3g0470051' => 'rch', 'RcHm_v2.0_Chr5g0065921' => 'rch', 'Rhsim01G0230800' => 'rsi', 'Rhsim03G0133500' => 'rsi', 'Sabra08G0042400' => 'sbr', 'SalBow3G1548' => 'sbo', 'SalBow6G2192' => 'sbo', 'SalBow6G6345' => 'sbo', 'SalBow7G1955' => 'sbo', 'Sc10g0001700' => 'sci', 'Sc12g0001300' => 'sci', 'Sc21g0005940' => 'sci', 'Sed0000866' => 'sed', 'Sed0002507' => 'sed', 'Sed0003934' => 'sed', 'Sed0008013' => 'sed', 'Sed0008951' => 'sed', 'Sed0009419' => 'sed', 'Sed0019804' => 'sed', 'Sed0020721' => 'sed', 'Sed0021325' => 'sed', 'Sed0022297' => 'sed', 'Sed0023003' => 'sed', 'SHI12464' => 'shi', 'Solyc06g076320.1' => 'sly', 'Sp4g21960' => 'spa', 'THA.LOC104810035' => 'tha', 'THA.LOC104810403' => 'tha', 'THA.LOC104822609' => 'tha', 'THA.LOC109116388' => 'tha', 'THA.LOC109117081' => 'tha', 'Thecc.06G132000' => 'tca', 'Thecc.09G317800' => 'tca', 'Thecc.10G036800' => 'tca', 'Thecc.10G082100' => 'tca', 'Thhalv10010948m.g' => 'esa', 'Thhalv10017695m.g' => 'esa', 'Thhalv10017949m.g' => 'esa', 'TPR.G15833' => 'tpr', 'TPR.G20214' => 'tpr', 'TPR.G23565' => 'tpr', 'TPR.G26464' => 'tpr', 'TPR.G3500' => 'tpr', 'TPR.G5599' => 'tpr', 'TPR.G9363' => 'tpr', 'TWI31G0218' => 'twi', 'TWI74G0876' => 'twi', 'TWI79G1693' => 'twi', 'unitig_746.g26724' => 'ugi', 'unitig_8.g4710' => 'ugi', 'unitig_899.g15255' => 'ugi', 'VMungo0720G3116' => 'vmu', 'Zm00001eb136340' => 'zma', 'Zm00001eb355880' => 'zma', 'Zm00001eb362230' => 'zma', 'Zm00001eb367930' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001415', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001415' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001415', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '444', 'num_species' => '80' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001415' ) ), 'genes' => array( 'A01p39330' => 'bna', 'A03p20360' => 'bna', 'A03p38770' => 'bna', 'A04p04410' => 'bna', 'A04p28260' => 'bna', 'A04p30340' => 'bna', 'A05p06700' => 'bna', 'A05p08830' => 'bna', 'A05p35030' => 'bna', 'A07p21460' => 'bna', 'A08p01440' => 'bna', 'A09p46240' => 'bna', 'A09p48520' => 'bna', 'A10p06020' => 'bna', 'Aa31LG5G22210' => 'aar', 'Actinidia02936' => 'ach', 'Ah.08g211680' => 'amhyb', 'Ah.08g219870' => 'amhyb', 'Ah.15g098480' => 'amhyb', 'AL1G62400' => 'aly', 'AL3G26700' => 'aly', 'AL4G23680' => 'aly', 'AL4G33230' => 'aly', 'AL4G37150' => 'aly', 'AL5G34120' => 'aly', 'AL5G36670' => 'aly', 'Aqoxy2G02269' => 'aox', 'Aqoxy7G04200' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CC2P36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6EZ89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7ANH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2C0P1' => 'arhy', 'AT1G53708' => 'ath', 'AT2G29125' => 'ath', 'AT2G36985' => 'ath', 'AT2G39705' => 'ath', 'AT3G14362' => 'ath', 'AT3G53232' => 'ath', 'AT3G55515' => 'ath', 'ATR0626G034' => 'atr', 'Atru.chr1.4181' => 'acertr', 'Atru.chr12.418' => 'acertr', 'Atru.chr3.3969' => 'acertr', 'BcaB01g00087' => 'bca', 'BcaB01g00298' => 'bca', 'BcaB01g00299' => 'bca', 'BcaB01g03804' => 'bca', 'BcaB02g08412' => 'bca', 'BcaB02g08413' => 'bca', 'BcaB02g09096' => 'bca', 'BcaB02g09311' => 'bca', 'BcaB06g28285' => 'bca', 'BcaB06g28286' => 'bca', 'BcaB06g28964' => 'bca', 'BcaB06g29109' => 'bca', 'BcaC01g05622' => 'bca', 'BcaC02g07426' => 'bca', 'BcaC02g07562' => 'bca', 'BcaC02g07563' => 'bca', 'BcaC02g07564' => 'bca', 'BcaC02g07565' => 'bca', 'BcaC02g08109' => 'bca', 'BcaC02g09763' => 'bca', 'BcaC02g11823' => 'bca', 'BcaC02g11824' => 'bca', 'BcaC02g12100' => 'bca', 'BcaC07g39683' => 'bca', 'BcaC07g39877' => 'bca', 'BcaC07g41995' => 'bca', 'BolC1t04969H' => 'bol', 'BolC3t14783H' => 'bol', 'BolC3t16958H' => 'bol', 'BolC3t21494H' => 'bol', 'BolC4t22402H' => 'bol', 'BolC4t22690H' => 'bol', 'BolC4t25114H' => 'bol', 'BolC4t28054H' => 'bol', 'BolC4t28246H' => 'bol', 'BolC5t33977H' => 'bol', 'BolC6t36025H' => 'bol', 'BolC8t50454H' => 'bol', 'BolC8t50708H' => 'bol', 'BolC8t52582H' => 'bol', 'BraA01t03976Z' => 'bra', 'BraA03t11281Z' => 'bra', 'BraA03t13025Z' => 'bra', 'BraA04t16154Z' => 'bra', 'BraA04t18474Z' => 'bra', 'BraA05t19637Z' => 'bra', 'BraA05t19850Z' => 'bra', 'BraA05t22317Z' => 'bra', 'BraA07t29833Z' => 'bra', 'BraA08t32195Z' => 'bra', 'BraA09t40087Z' => 'bra', 'BraA09t40304Z' => 'bra', 'BraA10t42864Z' => 'bra', 'C01p50150' => 'bna', 'C03p23940' => 'bna', 'C04p07830' => 'bna', 'C04p10960' => 'bna', 'C04p36850' => 'bna', 'C04p65620' => 'bna', 'C04p67490' => 'bna', 'C05p52990' => 'bna', 'C08p28460' => 'bna', 'C08p30820' => 'bna', 'C08p50550' => 'bna', 'CAN.G1366.20' => 'can', 'CAN.G790.46' => 'can', 'CAN.G900.45' => 'can', 'CANSAT54G2158' => 'cansat', 'CANSAT56G0089' => 'cansat', 'CANSAT56G2970' => 'cansat', 'CANSAT80G1980' => 'cansat', 'CARHR089420' => 'chi', 'CARHR134540' => 'chi', 'CARHR163060' => 'chi', 'CARHR165570' => 'chi', 'Carub.0001s4298' => 'cru', 'Carub.0003s1407' => 'cru', 'Carub.0004s1883' => 'cru', 'Carub.0004s2175' => 'cru', 'Carub.0005s1977' => 'cru', 'Carub.0005s2224' => 'cru', 'Ca_05883_v3' => 'car', 'Ca_23470_v3' => 'car', 'Cc01_g13180' => 'ccan', 'Cc02_g07600' => 'ccan', 'Cfa001452' => 'cfa', 'Cfa011527' => 'cfa', 'Ciclev10030229m.g' => 'ccl', 'Ciclev10033183m.g' => 'ccl', 'CiPaw.01G210100' => 'cil', 'CiPaw.01G269600' => 'cil', 'CiPaw.01G289500' => 'cil', 'CiPaw.02G172500' => 'cil', 'CiPaw.02G185400' => 'cil', 'CiPaw.10G130800' => 'cil', 'CiPaw.13G091000' => 'cil', 'CiPaw.14G067100' => 'cil', 'ClCG02G019980' => 'cla', 'ClCG03G001360' => 'cla', 'ClCG04G009250' => 'cla', 'ClCG07G003480' => 'cla', 'ClCG08G007660' => 'cla', 'ClCG09G019600' => 'cla', 'COL.COLO4_17147' => 'col', 'COL.COLO4_18559' => 'col', 'COL.COLO4_26977' => 'col', 'COL.COLO4_30888' => 'col', 'Cpa.g.sc157.2' => 'cpa', 'Cpa.g.sc81.113' => 'cpa', 'CsaV3_1G034460' => 'csa', 'CsaV3_4G003150' => 'csa', 'CsaV3_5G008210' => 'csa', 'CsaV3_5G026780' => 'csa', 'CsaV3_6G036630' => 'csa', 'CsaV3_6G039840' => 'csa', 'CsaV3_7G033880' => 'csa', 'CSS0013409' => 'camsi', 'CSS0014027' => 'camsi', 'CSS0026842' => 'camsi', 'CSS0027316' => 'camsi', 'DCAR_005958' => 'dca', 'DCAR_020825' => 'dca', 'DCAR_022634' => 'dca', 'DCAR_027603' => 'dca', 'Dinv37809' => 'din', 'Duzib114G0513' => 'dzi', 'Duzib128G0356' => 'dzi', 'Duzib128G1683' => 'dzi', 'Duzib150G0909' => 'dzi', 'Duzib168G2106' => 'dzi', 'Duzib170G0931' => 'dzi', 'Duzib192G0302' => 'dzi', 'ECA238G4842' => 'eca', 'EL10Ac7g16050' => 'bvu', 'Eucgr.J01236' => 'egr', 'FAN01G1035' => 'fan', 'FAN01G1619' => 'fan', 'FAN03G1064' => 'fan', 'FAN05G3971' => 'fan', 'FAN06G1409' => 'fan', 'FAN06G4365' => 'fan', 'FAN10G0897' => 'fan', 'FAN14G2263' => 'fan', 'FAN16G2514' => 'fan', 'Glyma.02G248900' => 'gma', 'Glyma.03G182700' => 'gma', 'Glyma.07G047000' => 'gma', 'Glyma.10G057200' => 'gma', 'Glyma.10G122700' => 'gma', 'Glyma.10G208400' => 'gma', 'Glyma.10G208500' => 'gma', 'Glyma.11G137600' => 'gma', 'Glyma.11G220000' => 'gma', 'Glyma.13G143700' => 'gma', 'Glyma.13G338000' => 'gma', 'Glyma.14G067500' => 'gma', 'Glyma.15G036400' => 'gma', 'Glyma.16G015200' => 'gma', 'Glyma.18G037400' => 'gma', 'Glyma.18G076400' => 'gma', 'Glyma.19G183200' => 'gma', 'Glyma.20G182200' => 'gma', 'Glyma.20G182300' => 'gma', 'Gohir.A04G072400' => 'ghi', 'Gohir.A05G093900' => 'ghi', 'Gohir.A05G142400' => 'ghi', 'Gohir.A05G293900' => 'ghi', 'Gohir.A05G348600' => 'ghi', 'Gohir.A05G411700' => 'ghi', 'Gohir.A06G142100' => 'ghi', 'Gohir.A09G147800' => 'ghi', 'Gohir.A10G049600' => 'ghi', 'Gohir.A10G203600' => 'ghi', 'Gohir.A10G220900' => 'ghi', 'Gohir.A11G324200' => 'ghi', 'Gohir.A13G018500' => 'ghi', 'Gohir.A13G227216' => 'ghi', 'Gohir.D04G004300' => 'ghi', 'Gohir.D04G063900' => 'ghi', 'Gohir.D04G111000' => 'ghi', 'Gohir.D05G094400' => 'ghi', 'Gohir.D05G144700' => 'ghi', 'Gohir.D05G294600' => 'ghi', 'Gohir.D06G147900' => 'ghi', 'Gohir.D09G143600' => 'ghi', 'Gohir.D10G050300' => 'ghi', 'Gohir.D10G211700' => 'ghi', 'Gohir.D10G233100' => 'ghi', 'Gohir.D11G343300' => 'ghi', 'Gohir.D13G019500' => 'ghi', 'Gohir.D13G232500' => 'ghi', 'Gorai.006G164900' => 'gra', 'Gorai.007G373400' => 'gra', 'Gorai.009G097500' => 'gra', 'Gorai.009G148600' => 'gra', 'Gorai.009G311300' => 'gra', 'Gorai.009G415100' => 'gra', 'Gorai.010G172400' => 'gra', 'Gorai.011G053800' => 'gra', 'Gorai.011G237600' => 'gra', 'Gorai.011G266700' => 'gra', 'Gorai.012G005500' => 'gra', 'Gorai.012G071500' => 'gra', 'Gorai.013G021600' => 'gra', 'Gorai.013G263300' => 'gra', 'GSVIVG01025722001' => 'vvi', 'HanXRQChr01g0010481' => 'han', 'HanXRQChr02g0053421' => 'han', 'HanXRQChr07g0201511' => 'han', 'HanXRQChr09g0250171' => 'han', 'HanXRQChr10g0312871' => 'han', 'HanXRQChr11g0327601' => 'han', 'HanXRQChr14g0454501' => 'han', 'Haze_17089' => 'cav', 'Haze_24132' => 'cav', 'Hma1.2p1_0757F.1_g213305' => 'hma', 'Hma1.2p1_0757F.1_g213310' => 'hma', 'Hma1.2p1_0998F.1_g246100' => 'hma', 'Hma1.2p1_1480F.1_g286050' => 'hma', 'HPP92_001492' => 'vpl', 'HPP92_006626' => 'vpl', 'HPP92_012600' => 'vpl', 'HPP92_018137' => 'vpl', 'HPP92_026000' => 'vpl', 'HPP92_027005' => 'vpl', 'Lalb_Chr01g0018721' => 'lal', 'Lalb_Chr02g0152101' => 'lal', 'Lalb_Chr03g0026501' => 'lal', 'Lalb_Chr04g0251121' => 'lal', 'Lalb_Chr04g0254011' => 'lal', 'Lalb_Chr10g0101041' => 'lal', 'Lalb_Chr10g0104651' => 'lal', 'Lalb_Chr15g0084661' => 'lal', 'Lalb_Chr17g0346301' => 'lal', 'Lalb_Chr18g0044821' => 'lal', 'Lalb_Chr18g0053201' => 'lal', 'Lalb_Chr19g0137921' => 'lal', 'Lalb_Chr20g0112631' => 'lal', 'Lalb_Chr25g0289021' => 'lal', 'Lj1g0014030' => 'lja', 'Lj1g0021078' => 'lja', 'Lj3g0004291' => 'lja', 'Lj3g0014912' => 'lja', 'Lj5g0008582' => 'lja', 'LjContig00141g0017499' => 'lja', 'Lsat_1_v5_gn_2_106661' => 'lsa', 'Lsat_1_v5_gn_2_118460' => 'lsa', 'Lsat_1_v5_gn_5_169241' => 'lsa', 'Lsat_1_v5_gn_6_25220' => 'lsa', 'Lsat_1_v5_gn_9_64901' => 'lsa', 'Manes.01G170700' => 'mes', 'Manes.02G130200' => 'mes', 'Manes.04G152500' => 'mes', 'Manes.07G117800' => 'mes', 'Manes.07G133164' => 'mes', 'Manes.08G009400' => 'mes', 'Manes.09G067380' => 'mes', 'Manes.10G028700' => 'mes', 'Manes.10G049900' => 'mes', 'MBI05_g29691_MAGBIO' => 'mbi', 'MBI14_g04657_MAGBIO' => 'mbi', 'MD01G1103800' => 'mdo', 'MD01G1136300' => 'mdo', 'MD03G1087500' => 'mdo', 'MD04G1094700' => 'mdo', 'MD07G1170600' => 'mdo', 'MD07G1201200' => 'mdo', 'MD09G1171200' => 'mdo', 'MD11G1096600' => 'mdo', 'MD12G1114900' => 'mdo', 'Medtr1g047840' => 'mtr', 'Medtr1g063830' => 'mtr', 'Medtr2g097570' => 'mtr', 'Medtr3g067980' => 'mtr', 'Medtr4g064520' => 'mtr', 'Medtr5g080260' => 'mtr', 'Medtr7g101850' => 'mtr', 'Medtr7g117490' => 'mtr', 'Medtr8g023610' => 'mtr', 'MELO3C019818.2' => 'cme', 'MELO3C020615.2' => 'cme', 'MELO3C021616.2' => 'cme', 'MELO3C023874.2' => 'cme', 'MELO3C024301.2' => 'cme', 'MELO3C025900.2' => 'cme', 'Migut.B01170' => 'egut', 'Migut.D00904' => 'egut', 'Migut.F01456' => 'egut', 'Migut.F01961' => 'egut', 'Migut.I01146' => 'egut', 'Migut.J00518' => 'egut', 'Migut.L01694' => 'egut', 'MSTRG.21203' => 'ama', 'Nn2g11165' => 'nnu', 'Nn2g11570' => 'nnu', 'Nn2g13402' => 'nnu', 'Nn2g13768' => 'nnu', 'Nn3g17551' => 'nnu', 'Nn6g31497' => 'nnu', 'Oeu012944.2' => 'oeu', 'Oeu045612.1' => 'oeu', 'Oeu053887.1' => 'oeu', 'Os01g0844200' => 'osa', 'Os01g0972300' => 'osa', 'Os03g0272900' => 'osa', 'Os05g0110200' => 'osa', 'Os05g0458200' => 'osa', 'Os12g0573600' => 'osa', 'PGR102G0519' => 'pgr', 'PGR119G2183' => 'pgr', 'PGSC0003DMG400006357' => 'stu', 'PGSC0003DMG400009157' => 'stu', 'Phvul.001G178700' => 'pvu', 'Phvul.001G233300' => 'pvu', 'Phvul.007G098400' => 'pvu', 'Phvul.007G098500' => 'pvu', 'Phvul.007G235700' => 'pvu', 'Phvul.008G191701' => 'pvu', 'Phvul.009G260600' => 'pvu', 'Phvul.010G121900' => 'pvu', 'Phvul.011G062700' => 'pvu', 'Phvul.L007243' => 'pvu', 'Potri.001G161200' => 'ptr', 'Potri.001G242800' => 'ptr', 'Potri.002G235101' => 'ptr', 'Potri.003G073900' => 'ptr', 'Potri.006G125600' => 'ptr', 'Potri.008G035900' => 'ptr', 'Potri.008G057800' => 'ptr', 'Potri.009G034300' => 'ptr', 'Potri.010G201700' => 'ptr', 'Potri.010G226250' => 'ptr', 'Prupe.2G209600' => 'ppe', 'Prupe.2G237800' => 'ppe', 'Prupe.3G029700' => 'ppe', 'Prupe.6G072200' => 'ppe', 'Prupe.6G233800' => 'ppe', 'Psat3g042400' => 'psa', 'PSO135G0377' => 'pso', 'PSO274G0001' => 'pso', 'PSO513G0025' => 'pso', 'QL08p060355' => 'qlo', 'RcHm_v2.0_Chr1g0362751' => 'rch', 'RcHm_v2.0_Chr1g0367921' => 'rch', 'RcHm_v2.0_Chr2g0148241' => 'rch', 'RcHm_v2.0_Chr3g0470051' => 'rch', 'RcHm_v2.0_Chr5g0065921' => 'rch', 'Rhsim01G0230800' => 'rsi', 'Rhsim03G0133500' => 'rsi', 'Sabra08G0042400' => 'sbr', 'SalBow3G1548' => 'sbo', 'SalBow6G2192' => 'sbo', 'SalBow6G6345' => 'sbo', 'SalBow7G1955' => 'sbo', 'Sc10g0001700' => 'sci', 'Sc12g0001300' => 'sci', 'Sc21g0005940' => 'sci', 'Sed0000866' => 'sed', 'Sed0002507' => 'sed', 'Sed0003934' => 'sed', 'Sed0008013' => 'sed', 'Sed0008951' => 'sed', 'Sed0009419' => 'sed', 'Sed0019804' => 'sed', 'Sed0020721' => 'sed', 'Sed0021325' => 'sed', 'Sed0022297' => 'sed', 'Sed0023003' => 'sed', 'SHI12464' => 'shi', 'Solyc06g076320.1' => 'sly', 'Sp4g21960' => 'spa', 'THA.LOC104810035' => 'tha', 'THA.LOC104810403' => 'tha', 'THA.LOC104822609' => 'tha', 'THA.LOC109116388' => 'tha', 'THA.LOC109117081' => 'tha', 'Thecc.06G132000' => 'tca', 'Thecc.09G317800' => 'tca', 'Thecc.10G036800' => 'tca', 'Thecc.10G082100' => 'tca', 'Thhalv10010948m.g' => 'esa', 'Thhalv10017695m.g' => 'esa', 'Thhalv10017949m.g' => 'esa', 'TPR.G15833' => 'tpr', 'TPR.G20214' => 'tpr', 'TPR.G23565' => 'tpr', 'TPR.G26464' => 'tpr', 'TPR.G3500' => 'tpr', 'TPR.G5599' => 'tpr', 'TPR.G9363' => 'tpr', 'TWI31G0218' => 'twi', 'TWI74G0876' => 'twi', 'TWI79G1693' => 'twi', 'unitig_746.g26724' => 'ugi', 'unitig_8.g4710' => 'ugi', 'unitig_899.g15255' => 'ugi', 'VMungo0720G3116' => 'vmu', 'Zm00001eb136340' => 'zma', 'Zm00001eb355880' => 'zma', 'Zm00001eb362230' => 'zma', 'Zm00001eb367930' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001415' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001415' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001415' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001415' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001415', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '444', 'num_species' => '80' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39330' => 'bna', 'A03p20360' => 'bna', 'A03p38770' => 'bna', 'A04p04410' => 'bna', 'A04p28260' => 'bna', 'A04p30340' => 'bna', 'A05p06700' => 'bna', 'A05p08830' => 'bna', 'A05p35030' => 'bna', 'A07p21460' => 'bna', 'A08p01440' => 'bna', 'A09p46240' => 'bna', 'A09p48520' => 'bna', 'A10p06020' => 'bna', 'Aa31LG5G22210' => 'aar', 'Actinidia02936' => 'ach', 'Ah.08g211680' => 'amhyb', 'Ah.08g219870' => 'amhyb', 'Ah.15g098480' => 'amhyb', 'AL1G62400' => 'aly', 'AL3G26700' => 'aly', 'AL4G23680' => 'aly', 'AL4G33230' => 'aly', 'AL4G37150' => 'aly', 'AL5G34120' => 'aly', 'AL5G36670' => 'aly', 'Aqoxy2G02269' => 'aox', 'Aqoxy7G04200' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CC2P36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6EZ89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7ANH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2C0P1' => 'arhy', 'AT1G53708' => 'ath', 'AT2G29125' => 'ath', 'AT2G36985' => 'ath', 'AT2G39705' => 'ath', 'AT3G14362' => 'ath', 'AT3G53232' => 'ath', 'AT3G55515' => 'ath', 'ATR0626G034' => 'atr', 'Atru.chr1.4181' => 'acertr', 'Atru.chr12.418' => 'acertr', 'Atru.chr3.3969' => 'acertr', 'BcaB01g00087' => 'bca', 'BcaB01g00298' => 'bca', 'BcaB01g00299' => 'bca', 'BcaB01g03804' => 'bca', 'BcaB02g08412' => 'bca', 'BcaB02g08413' => 'bca', 'BcaB02g09096' => 'bca', 'BcaB02g09311' => 'bca', 'BcaB06g28285' => 'bca', 'BcaB06g28286' => 'bca', 'BcaB06g28964' => 'bca', 'BcaB06g29109' => 'bca', 'BcaC01g05622' => 'bca', 'BcaC02g07426' => 'bca', 'BcaC02g07562' => 'bca', 'BcaC02g07563' => 'bca', 'BcaC02g07564' => 'bca', 'BcaC02g07565' => 'bca', 'BcaC02g08109' => 'bca', 'BcaC02g09763' => 'bca', 'BcaC02g11823' => 'bca', 'BcaC02g11824' => 'bca', 'BcaC02g12100' => 'bca', 'BcaC07g39683' => 'bca', 'BcaC07g39877' => 'bca', 'BcaC07g41995' => 'bca', 'BolC1t04969H' => 'bol', 'BolC3t14783H' => 'bol', 'BolC3t16958H' => 'bol', 'BolC3t21494H' => 'bol', 'BolC4t22402H' => 'bol', 'BolC4t22690H' => 'bol', 'BolC4t25114H' => 'bol', 'BolC4t28054H' => 'bol', 'BolC4t28246H' => 'bol', 'BolC5t33977H' => 'bol', 'BolC6t36025H' => 'bol', 'BolC8t50454H' => 'bol', 'BolC8t50708H' => 'bol', 'BolC8t52582H' => 'bol', 'BraA01t03976Z' => 'bra', 'BraA03t11281Z' => 'bra', 'BraA03t13025Z' => 'bra', 'BraA04t16154Z' => 'bra', 'BraA04t18474Z' => 'bra', 'BraA05t19637Z' => 'bra', 'BraA05t19850Z' => 'bra', 'BraA05t22317Z' => 'bra', 'BraA07t29833Z' => 'bra', 'BraA08t32195Z' => 'bra', 'BraA09t40087Z' => 'bra', 'BraA09t40304Z' => 'bra', 'BraA10t42864Z' => 'bra', 'C01p50150' => 'bna', 'C03p23940' => 'bna', 'C04p07830' => 'bna', 'C04p10960' => 'bna', 'C04p36850' => 'bna', 'C04p65620' => 'bna', 'C04p67490' => 'bna', 'C05p52990' => 'bna', 'C08p28460' => 'bna', 'C08p30820' => 'bna', 'C08p50550' => 'bna', 'CAN.G1366.20' => 'can', 'CAN.G790.46' => 'can', 'CAN.G900.45' => 'can', 'CANSAT54G2158' => 'cansat', 'CANSAT56G0089' => 'cansat', 'CANSAT56G2970' => 'cansat', 'CANSAT80G1980' => 'cansat', 'CARHR089420' => 'chi', 'CARHR134540' => 'chi', 'CARHR163060' => 'chi', 'CARHR165570' => 'chi', 'Carub.0001s4298' => 'cru', 'Carub.0003s1407' => 'cru', 'Carub.0004s1883' => 'cru', 'Carub.0004s2175' => 'cru', 'Carub.0005s1977' => 'cru', 'Carub.0005s2224' => 'cru', 'Ca_05883_v3' => 'car', 'Ca_23470_v3' => 'car', 'Cc01_g13180' => 'ccan', 'Cc02_g07600' => 'ccan', 'Cfa001452' => 'cfa', 'Cfa011527' => 'cfa', 'Ciclev10030229m.g' => 'ccl', 'Ciclev10033183m.g' => 'ccl', 'CiPaw.01G210100' => 'cil', 'CiPaw.01G269600' => 'cil', 'CiPaw.01G289500' => 'cil', 'CiPaw.02G172500' => 'cil', 'CiPaw.02G185400' => 'cil', 'CiPaw.10G130800' => 'cil', 'CiPaw.13G091000' => 'cil', 'CiPaw.14G067100' => 'cil', 'ClCG02G019980' => 'cla', 'ClCG03G001360' => 'cla', 'ClCG04G009250' => 'cla', 'ClCG07G003480' => 'cla', 'ClCG08G007660' => 'cla', 'ClCG09G019600' => 'cla', 'COL.COLO4_17147' => 'col', 'COL.COLO4_18559' => 'col', 'COL.COLO4_26977' => 'col', 'COL.COLO4_30888' => 'col', 'Cpa.g.sc157.2' => 'cpa', 'Cpa.g.sc81.113' => 'cpa', 'CsaV3_1G034460' => 'csa', 'CsaV3_4G003150' => 'csa', 'CsaV3_5G008210' => 'csa', 'CsaV3_5G026780' => 'csa', 'CsaV3_6G036630' => 'csa', 'CsaV3_6G039840' => 'csa', 'CsaV3_7G033880' => 'csa', 'CSS0013409' => 'camsi', 'CSS0014027' => 'camsi', 'CSS0026842' => 'camsi', 'CSS0027316' => 'camsi', 'DCAR_005958' => 'dca', 'DCAR_020825' => 'dca', 'DCAR_022634' => 'dca', 'DCAR_027603' => 'dca', 'Dinv37809' => 'din', 'Duzib114G0513' => 'dzi', 'Duzib128G0356' => 'dzi', 'Duzib128G1683' => 'dzi', 'Duzib150G0909' => 'dzi', 'Duzib168G2106' => 'dzi', 'Duzib170G0931' => 'dzi', 'Duzib192G0302' => 'dzi', 'ECA238G4842' => 'eca', 'EL10Ac7g16050' => 'bvu', 'Eucgr.J01236' => 'egr', 'FAN01G1035' => 'fan', 'FAN01G1619' => 'fan', 'FAN03G1064' => 'fan', 'FAN05G3971' => 'fan', 'FAN06G1409' => 'fan', 'FAN06G4365' => 'fan', 'FAN10G0897' => 'fan', 'FAN14G2263' => 'fan', 'FAN16G2514' => 'fan', 'Glyma.02G248900' => 'gma', 'Glyma.03G182700' => 'gma', 'Glyma.07G047000' => 'gma', 'Glyma.10G057200' => 'gma', 'Glyma.10G122700' => 'gma', 'Glyma.10G208400' => 'gma', 'Glyma.10G208500' => 'gma', 'Glyma.11G137600' => 'gma', 'Glyma.11G220000' => 'gma', 'Glyma.13G143700' => 'gma', 'Glyma.13G338000' => 'gma', 'Glyma.14G067500' => 'gma', 'Glyma.15G036400' => 'gma', 'Glyma.16G015200' => 'gma', 'Glyma.18G037400' => 'gma', 'Glyma.18G076400' => 'gma', 'Glyma.19G183200' => 'gma', 'Glyma.20G182200' => 'gma', 'Glyma.20G182300' => 'gma', 'Gohir.A04G072400' => 'ghi', 'Gohir.A05G093900' => 'ghi', 'Gohir.A05G142400' => 'ghi', 'Gohir.A05G293900' => 'ghi', 'Gohir.A05G348600' => 'ghi', 'Gohir.A05G411700' => 'ghi', 'Gohir.A06G142100' => 'ghi', 'Gohir.A09G147800' => 'ghi', 'Gohir.A10G049600' => 'ghi', 'Gohir.A10G203600' => 'ghi', 'Gohir.A10G220900' => 'ghi', 'Gohir.A11G324200' => 'ghi', 'Gohir.A13G018500' => 'ghi', 'Gohir.A13G227216' => 'ghi', 'Gohir.D04G004300' => 'ghi', 'Gohir.D04G063900' => 'ghi', 'Gohir.D04G111000' => 'ghi', 'Gohir.D05G094400' => 'ghi', 'Gohir.D05G144700' => 'ghi', 'Gohir.D05G294600' => 'ghi', 'Gohir.D06G147900' => 'ghi', 'Gohir.D09G143600' => 'ghi', 'Gohir.D10G050300' => 'ghi', 'Gohir.D10G211700' => 'ghi', 'Gohir.D10G233100' => 'ghi', 'Gohir.D11G343300' => 'ghi', 'Gohir.D13G019500' => 'ghi', 'Gohir.D13G232500' => 'ghi', 'Gorai.006G164900' => 'gra', 'Gorai.007G373400' => 'gra', 'Gorai.009G097500' => 'gra', 'Gorai.009G148600' => 'gra', 'Gorai.009G311300' => 'gra', 'Gorai.009G415100' => 'gra', 'Gorai.010G172400' => 'gra', 'Gorai.011G053800' => 'gra', 'Gorai.011G237600' => 'gra', 'Gorai.011G266700' => 'gra', 'Gorai.012G005500' => 'gra', 'Gorai.012G071500' => 'gra', 'Gorai.013G021600' => 'gra', 'Gorai.013G263300' => 'gra', 'GSVIVG01025722001' => 'vvi', 'HanXRQChr01g0010481' => 'han', 'HanXRQChr02g0053421' => 'han', 'HanXRQChr07g0201511' => 'han', 'HanXRQChr09g0250171' => 'han', 'HanXRQChr10g0312871' => 'han', 'HanXRQChr11g0327601' => 'han', 'HanXRQChr14g0454501' => 'han', 'Haze_17089' => 'cav', 'Haze_24132' => 'cav', 'Hma1.2p1_0757F.1_g213305' => 'hma', 'Hma1.2p1_0757F.1_g213310' => 'hma', 'Hma1.2p1_0998F.1_g246100' => 'hma', 'Hma1.2p1_1480F.1_g286050' => 'hma', 'HPP92_001492' => 'vpl', 'HPP92_006626' => 'vpl', 'HPP92_012600' => 'vpl', 'HPP92_018137' => 'vpl', 'HPP92_026000' => 'vpl', 'HPP92_027005' => 'vpl', 'Lalb_Chr01g0018721' => 'lal', 'Lalb_Chr02g0152101' => 'lal', 'Lalb_Chr03g0026501' => 'lal', 'Lalb_Chr04g0251121' => 'lal', 'Lalb_Chr04g0254011' => 'lal', 'Lalb_Chr10g0101041' => 'lal', 'Lalb_Chr10g0104651' => 'lal', 'Lalb_Chr15g0084661' => 'lal', 'Lalb_Chr17g0346301' => 'lal', 'Lalb_Chr18g0044821' => 'lal', 'Lalb_Chr18g0053201' => 'lal', 'Lalb_Chr19g0137921' => 'lal', 'Lalb_Chr20g0112631' => 'lal', 'Lalb_Chr25g0289021' => 'lal', 'Lj1g0014030' => 'lja', 'Lj1g0021078' => 'lja', 'Lj3g0004291' => 'lja', 'Lj3g0014912' => 'lja', 'Lj5g0008582' => 'lja', 'LjContig00141g0017499' => 'lja', 'Lsat_1_v5_gn_2_106661' => 'lsa', 'Lsat_1_v5_gn_2_118460' => 'lsa', 'Lsat_1_v5_gn_5_169241' => 'lsa', 'Lsat_1_v5_gn_6_25220' => 'lsa', 'Lsat_1_v5_gn_9_64901' => 'lsa', 'Manes.01G170700' => 'mes', 'Manes.02G130200' => 'mes', 'Manes.04G152500' => 'mes', 'Manes.07G117800' => 'mes', 'Manes.07G133164' => 'mes', 'Manes.08G009400' => 'mes', 'Manes.09G067380' => 'mes', 'Manes.10G028700' => 'mes', 'Manes.10G049900' => 'mes', 'MBI05_g29691_MAGBIO' => 'mbi', 'MBI14_g04657_MAGBIO' => 'mbi', 'MD01G1103800' => 'mdo', 'MD01G1136300' => 'mdo', 'MD03G1087500' => 'mdo', 'MD04G1094700' => 'mdo', 'MD07G1170600' => 'mdo', 'MD07G1201200' => 'mdo', 'MD09G1171200' => 'mdo', 'MD11G1096600' => 'mdo', 'MD12G1114900' => 'mdo', 'Medtr1g047840' => 'mtr', 'Medtr1g063830' => 'mtr', 'Medtr2g097570' => 'mtr', 'Medtr3g067980' => 'mtr', 'Medtr4g064520' => 'mtr', 'Medtr5g080260' => 'mtr', 'Medtr7g101850' => 'mtr', 'Medtr7g117490' => 'mtr', 'Medtr8g023610' => 'mtr', 'MELO3C019818.2' => 'cme', 'MELO3C020615.2' => 'cme', 'MELO3C021616.2' => 'cme', 'MELO3C023874.2' => 'cme', 'MELO3C024301.2' => 'cme', 'MELO3C025900.2' => 'cme', 'Migut.B01170' => 'egut', 'Migut.D00904' => 'egut', 'Migut.F01456' => 'egut', 'Migut.F01961' => 'egut', 'Migut.I01146' => 'egut', 'Migut.J00518' => 'egut', 'Migut.L01694' => 'egut', 'MSTRG.21203' => 'ama', 'Nn2g11165' => 'nnu', 'Nn2g11570' => 'nnu', 'Nn2g13402' => 'nnu', 'Nn2g13768' => 'nnu', 'Nn3g17551' => 'nnu', 'Nn6g31497' => 'nnu', 'Oeu012944.2' => 'oeu', 'Oeu045612.1' => 'oeu', 'Oeu053887.1' => 'oeu', 'Os01g0844200' => 'osa', 'Os01g0972300' => 'osa', 'Os03g0272900' => 'osa', 'Os05g0110200' => 'osa', 'Os05g0458200' => 'osa', 'Os12g0573600' => 'osa', 'PGR102G0519' => 'pgr', 'PGR119G2183' => 'pgr', 'PGSC0003DMG400006357' => 'stu', 'PGSC0003DMG400009157' => 'stu', 'Phvul.001G178700' => 'pvu', 'Phvul.001G233300' => 'pvu', 'Phvul.007G098400' => 'pvu', 'Phvul.007G098500' => 'pvu', 'Phvul.007G235700' => 'pvu', 'Phvul.008G191701' => 'pvu', 'Phvul.009G260600' => 'pvu', 'Phvul.010G121900' => 'pvu', 'Phvul.011G062700' => 'pvu', 'Phvul.L007243' => 'pvu', 'Potri.001G161200' => 'ptr', 'Potri.001G242800' => 'ptr', 'Potri.002G235101' => 'ptr', 'Potri.003G073900' => 'ptr', 'Potri.006G125600' => 'ptr', 'Potri.008G035900' => 'ptr', 'Potri.008G057800' => 'ptr', 'Potri.009G034300' => 'ptr', 'Potri.010G201700' => 'ptr', 'Potri.010G226250' => 'ptr', 'Prupe.2G209600' => 'ppe', 'Prupe.2G237800' => 'ppe', 'Prupe.3G029700' => 'ppe', 'Prupe.6G072200' => 'ppe', 'Prupe.6G233800' => 'ppe', 'Psat3g042400' => 'psa', 'PSO135G0377' => 'pso', 'PSO274G0001' => 'pso', 'PSO513G0025' => 'pso', 'QL08p060355' => 'qlo', 'RcHm_v2.0_Chr1g0362751' => 'rch', 'RcHm_v2.0_Chr1g0367921' => 'rch', 'RcHm_v2.0_Chr2g0148241' => 'rch', 'RcHm_v2.0_Chr3g0470051' => 'rch', 'RcHm_v2.0_Chr5g0065921' => 'rch', 'Rhsim01G0230800' => 'rsi', 'Rhsim03G0133500' => 'rsi', 'Sabra08G0042400' => 'sbr', 'SalBow3G1548' => 'sbo', 'SalBow6G2192' => 'sbo', 'SalBow6G6345' => 'sbo', 'SalBow7G1955' => 'sbo', 'Sc10g0001700' => 'sci', 'Sc12g0001300' => 'sci', 'Sc21g0005940' => 'sci', 'Sed0000866' => 'sed', 'Sed0002507' => 'sed', 'Sed0003934' => 'sed', 'Sed0008013' => 'sed', 'Sed0008951' => 'sed', 'Sed0009419' => 'sed', 'Sed0019804' => 'sed', 'Sed0020721' => 'sed', 'Sed0021325' => 'sed', 'Sed0022297' => 'sed', 'Sed0023003' => 'sed', 'SHI12464' => 'shi', 'Solyc06g076320.1' => 'sly', 'Sp4g21960' => 'spa', 'THA.LOC104810035' => 'tha', 'THA.LOC104810403' => 'tha', 'THA.LOC104822609' => 'tha', 'THA.LOC109116388' => 'tha', 'THA.LOC109117081' => 'tha', 'Thecc.06G132000' => 'tca', 'Thecc.09G317800' => 'tca', 'Thecc.10G036800' => 'tca', 'Thecc.10G082100' => 'tca', 'Thhalv10010948m.g' => 'esa', 'Thhalv10017695m.g' => 'esa', 'Thhalv10017949m.g' => 'esa', 'TPR.G15833' => 'tpr', 'TPR.G20214' => 'tpr', 'TPR.G23565' => 'tpr', 'TPR.G26464' => 'tpr', 'TPR.G3500' => 'tpr', 'TPR.G5599' => 'tpr', 'TPR.G9363' => 'tpr', 'TWI31G0218' => 'twi', 'TWI74G0876' => 'twi', 'TWI79G1693' => 'twi', 'unitig_746.g26724' => 'ugi', 'unitig_8.g4710' => 'ugi', 'unitig_899.g15255' => 'ugi', 'VMungo0720G3116' => 'vmu', 'Zm00001eb136340' => 'zma', 'Zm00001eb355880' => 'zma', 'Zm00001eb362230' => 'zma', 'Zm00001eb367930' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001415', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001415' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001415', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '444', 'num_species' => '80' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001415' ) ), 'genes' => array( 'A01p39330' => 'bna', 'A03p20360' => 'bna', 'A03p38770' => 'bna', 'A04p04410' => 'bna', 'A04p28260' => 'bna', 'A04p30340' => 'bna', 'A05p06700' => 'bna', 'A05p08830' => 'bna', 'A05p35030' => 'bna', 'A07p21460' => 'bna', 'A08p01440' => 'bna', 'A09p46240' => 'bna', 'A09p48520' => 'bna', 'A10p06020' => 'bna', 'Aa31LG5G22210' => 'aar', 'Actinidia02936' => 'ach', 'Ah.08g211680' => 'amhyb', 'Ah.08g219870' => 'amhyb', 'Ah.15g098480' => 'amhyb', 'AL1G62400' => 'aly', 'AL3G26700' => 'aly', 'AL4G23680' => 'aly', 'AL4G33230' => 'aly', 'AL4G37150' => 'aly', 'AL5G34120' => 'aly', 'AL5G36670' => 'aly', 'Aqoxy2G02269' => 'aox', 'Aqoxy7G04200' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CC2P36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6EZ89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7ANH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2C0P1' => 'arhy', 'AT1G53708' => 'ath', 'AT2G29125' => 'ath', 'AT2G36985' => 'ath', 'AT2G39705' => 'ath', 'AT3G14362' => 'ath', 'AT3G53232' => 'ath', 'AT3G55515' => 'ath', 'ATR0626G034' => 'atr', 'Atru.chr1.4181' => 'acertr', 'Atru.chr12.418' => 'acertr', 'Atru.chr3.3969' => 'acertr', 'BcaB01g00087' => 'bca', 'BcaB01g00298' => 'bca', 'BcaB01g00299' => 'bca', 'BcaB01g03804' => 'bca', 'BcaB02g08412' => 'bca', 'BcaB02g08413' => 'bca', 'BcaB02g09096' => 'bca', 'BcaB02g09311' => 'bca', 'BcaB06g28285' => 'bca', 'BcaB06g28286' => 'bca', 'BcaB06g28964' => 'bca', 'BcaB06g29109' => 'bca', 'BcaC01g05622' => 'bca', 'BcaC02g07426' => 'bca', 'BcaC02g07562' => 'bca', 'BcaC02g07563' => 'bca', 'BcaC02g07564' => 'bca', 'BcaC02g07565' => 'bca', 'BcaC02g08109' => 'bca', 'BcaC02g09763' => 'bca', 'BcaC02g11823' => 'bca', 'BcaC02g11824' => 'bca', 'BcaC02g12100' => 'bca', 'BcaC07g39683' => 'bca', 'BcaC07g39877' => 'bca', 'BcaC07g41995' => 'bca', 'BolC1t04969H' => 'bol', 'BolC3t14783H' => 'bol', 'BolC3t16958H' => 'bol', 'BolC3t21494H' => 'bol', 'BolC4t22402H' => 'bol', 'BolC4t22690H' => 'bol', 'BolC4t25114H' => 'bol', 'BolC4t28054H' => 'bol', 'BolC4t28246H' => 'bol', 'BolC5t33977H' => 'bol', 'BolC6t36025H' => 'bol', 'BolC8t50454H' => 'bol', 'BolC8t50708H' => 'bol', 'BolC8t52582H' => 'bol', 'BraA01t03976Z' => 'bra', 'BraA03t11281Z' => 'bra', 'BraA03t13025Z' => 'bra', 'BraA04t16154Z' => 'bra', 'BraA04t18474Z' => 'bra', 'BraA05t19637Z' => 'bra', 'BraA05t19850Z' => 'bra', 'BraA05t22317Z' => 'bra', 'BraA07t29833Z' => 'bra', 'BraA08t32195Z' => 'bra', 'BraA09t40087Z' => 'bra', 'BraA09t40304Z' => 'bra', 'BraA10t42864Z' => 'bra', 'C01p50150' => 'bna', 'C03p23940' => 'bna', 'C04p07830' => 'bna', 'C04p10960' => 'bna', 'C04p36850' => 'bna', 'C04p65620' => 'bna', 'C04p67490' => 'bna', 'C05p52990' => 'bna', 'C08p28460' => 'bna', 'C08p30820' => 'bna', 'C08p50550' => 'bna', 'CAN.G1366.20' => 'can', 'CAN.G790.46' => 'can', 'CAN.G900.45' => 'can', 'CANSAT54G2158' => 'cansat', 'CANSAT56G0089' => 'cansat', 'CANSAT56G2970' => 'cansat', 'CANSAT80G1980' => 'cansat', 'CARHR089420' => 'chi', 'CARHR134540' => 'chi', 'CARHR163060' => 'chi', 'CARHR165570' => 'chi', 'Carub.0001s4298' => 'cru', 'Carub.0003s1407' => 'cru', 'Carub.0004s1883' => 'cru', 'Carub.0004s2175' => 'cru', 'Carub.0005s1977' => 'cru', 'Carub.0005s2224' => 'cru', 'Ca_05883_v3' => 'car', 'Ca_23470_v3' => 'car', 'Cc01_g13180' => 'ccan', 'Cc02_g07600' => 'ccan', 'Cfa001452' => 'cfa', 'Cfa011527' => 'cfa', 'Ciclev10030229m.g' => 'ccl', 'Ciclev10033183m.g' => 'ccl', 'CiPaw.01G210100' => 'cil', 'CiPaw.01G269600' => 'cil', 'CiPaw.01G289500' => 'cil', 'CiPaw.02G172500' => 'cil', 'CiPaw.02G185400' => 'cil', 'CiPaw.10G130800' => 'cil', 'CiPaw.13G091000' => 'cil', 'CiPaw.14G067100' => 'cil', 'ClCG02G019980' => 'cla', 'ClCG03G001360' => 'cla', 'ClCG04G009250' => 'cla', 'ClCG07G003480' => 'cla', 'ClCG08G007660' => 'cla', 'ClCG09G019600' => 'cla', 'COL.COLO4_17147' => 'col', 'COL.COLO4_18559' => 'col', 'COL.COLO4_26977' => 'col', 'COL.COLO4_30888' => 'col', 'Cpa.g.sc157.2' => 'cpa', 'Cpa.g.sc81.113' => 'cpa', 'CsaV3_1G034460' => 'csa', 'CsaV3_4G003150' => 'csa', 'CsaV3_5G008210' => 'csa', 'CsaV3_5G026780' => 'csa', 'CsaV3_6G036630' => 'csa', 'CsaV3_6G039840' => 'csa', 'CsaV3_7G033880' => 'csa', 'CSS0013409' => 'camsi', 'CSS0014027' => 'camsi', 'CSS0026842' => 'camsi', 'CSS0027316' => 'camsi', 'DCAR_005958' => 'dca', 'DCAR_020825' => 'dca', 'DCAR_022634' => 'dca', 'DCAR_027603' => 'dca', 'Dinv37809' => 'din', 'Duzib114G0513' => 'dzi', 'Duzib128G0356' => 'dzi', 'Duzib128G1683' => 'dzi', 'Duzib150G0909' => 'dzi', 'Duzib168G2106' => 'dzi', 'Duzib170G0931' => 'dzi', 'Duzib192G0302' => 'dzi', 'ECA238G4842' => 'eca', 'EL10Ac7g16050' => 'bvu', 'Eucgr.J01236' => 'egr', 'FAN01G1035' => 'fan', 'FAN01G1619' => 'fan', 'FAN03G1064' => 'fan', 'FAN05G3971' => 'fan', 'FAN06G1409' => 'fan', 'FAN06G4365' => 'fan', 'FAN10G0897' => 'fan', 'FAN14G2263' => 'fan', 'FAN16G2514' => 'fan', 'Glyma.02G248900' => 'gma', 'Glyma.03G182700' => 'gma', 'Glyma.07G047000' => 'gma', 'Glyma.10G057200' => 'gma', 'Glyma.10G122700' => 'gma', 'Glyma.10G208400' => 'gma', 'Glyma.10G208500' => 'gma', 'Glyma.11G137600' => 'gma', 'Glyma.11G220000' => 'gma', 'Glyma.13G143700' => 'gma', 'Glyma.13G338000' => 'gma', 'Glyma.14G067500' => 'gma', 'Glyma.15G036400' => 'gma', 'Glyma.16G015200' => 'gma', 'Glyma.18G037400' => 'gma', 'Glyma.18G076400' => 'gma', 'Glyma.19G183200' => 'gma', 'Glyma.20G182200' => 'gma', 'Glyma.20G182300' => 'gma', 'Gohir.A04G072400' => 'ghi', 'Gohir.A05G093900' => 'ghi', 'Gohir.A05G142400' => 'ghi', 'Gohir.A05G293900' => 'ghi', 'Gohir.A05G348600' => 'ghi', 'Gohir.A05G411700' => 'ghi', 'Gohir.A06G142100' => 'ghi', 'Gohir.A09G147800' => 'ghi', 'Gohir.A10G049600' => 'ghi', 'Gohir.A10G203600' => 'ghi', 'Gohir.A10G220900' => 'ghi', 'Gohir.A11G324200' => 'ghi', 'Gohir.A13G018500' => 'ghi', 'Gohir.A13G227216' => 'ghi', 'Gohir.D04G004300' => 'ghi', 'Gohir.D04G063900' => 'ghi', 'Gohir.D04G111000' => 'ghi', 'Gohir.D05G094400' => 'ghi', 'Gohir.D05G144700' => 'ghi', 'Gohir.D05G294600' => 'ghi', 'Gohir.D06G147900' => 'ghi', 'Gohir.D09G143600' => 'ghi', 'Gohir.D10G050300' => 'ghi', 'Gohir.D10G211700' => 'ghi', 'Gohir.D10G233100' => 'ghi', 'Gohir.D11G343300' => 'ghi', 'Gohir.D13G019500' => 'ghi', 'Gohir.D13G232500' => 'ghi', 'Gorai.006G164900' => 'gra', 'Gorai.007G373400' => 'gra', 'Gorai.009G097500' => 'gra', 'Gorai.009G148600' => 'gra', 'Gorai.009G311300' => 'gra', 'Gorai.009G415100' => 'gra', 'Gorai.010G172400' => 'gra', 'Gorai.011G053800' => 'gra', 'Gorai.011G237600' => 'gra', 'Gorai.011G266700' => 'gra', 'Gorai.012G005500' => 'gra', 'Gorai.012G071500' => 'gra', 'Gorai.013G021600' => 'gra', 'Gorai.013G263300' => 'gra', 'GSVIVG01025722001' => 'vvi', 'HanXRQChr01g0010481' => 'han', 'HanXRQChr02g0053421' => 'han', 'HanXRQChr07g0201511' => 'han', 'HanXRQChr09g0250171' => 'han', 'HanXRQChr10g0312871' => 'han', 'HanXRQChr11g0327601' => 'han', 'HanXRQChr14g0454501' => 'han', 'Haze_17089' => 'cav', 'Haze_24132' => 'cav', 'Hma1.2p1_0757F.1_g213305' => 'hma', 'Hma1.2p1_0757F.1_g213310' => 'hma', 'Hma1.2p1_0998F.1_g246100' => 'hma', 'Hma1.2p1_1480F.1_g286050' => 'hma', 'HPP92_001492' => 'vpl', 'HPP92_006626' => 'vpl', 'HPP92_012600' => 'vpl', 'HPP92_018137' => 'vpl', 'HPP92_026000' => 'vpl', 'HPP92_027005' => 'vpl', 'Lalb_Chr01g0018721' => 'lal', 'Lalb_Chr02g0152101' => 'lal', 'Lalb_Chr03g0026501' => 'lal', 'Lalb_Chr04g0251121' => 'lal', 'Lalb_Chr04g0254011' => 'lal', 'Lalb_Chr10g0101041' => 'lal', 'Lalb_Chr10g0104651' => 'lal', 'Lalb_Chr15g0084661' => 'lal', 'Lalb_Chr17g0346301' => 'lal', 'Lalb_Chr18g0044821' => 'lal', 'Lalb_Chr18g0053201' => 'lal', 'Lalb_Chr19g0137921' => 'lal', 'Lalb_Chr20g0112631' => 'lal', 'Lalb_Chr25g0289021' => 'lal', 'Lj1g0014030' => 'lja', 'Lj1g0021078' => 'lja', 'Lj3g0004291' => 'lja', 'Lj3g0014912' => 'lja', 'Lj5g0008582' => 'lja', 'LjContig00141g0017499' => 'lja', 'Lsat_1_v5_gn_2_106661' => 'lsa', 'Lsat_1_v5_gn_2_118460' => 'lsa', 'Lsat_1_v5_gn_5_169241' => 'lsa', 'Lsat_1_v5_gn_6_25220' => 'lsa', 'Lsat_1_v5_gn_9_64901' => 'lsa', 'Manes.01G170700' => 'mes', 'Manes.02G130200' => 'mes', 'Manes.04G152500' => 'mes', 'Manes.07G117800' => 'mes', 'Manes.07G133164' => 'mes', 'Manes.08G009400' => 'mes', 'Manes.09G067380' => 'mes', 'Manes.10G028700' => 'mes', 'Manes.10G049900' => 'mes', 'MBI05_g29691_MAGBIO' => 'mbi', 'MBI14_g04657_MAGBIO' => 'mbi', 'MD01G1103800' => 'mdo', 'MD01G1136300' => 'mdo', 'MD03G1087500' => 'mdo', 'MD04G1094700' => 'mdo', 'MD07G1170600' => 'mdo', 'MD07G1201200' => 'mdo', 'MD09G1171200' => 'mdo', 'MD11G1096600' => 'mdo', 'MD12G1114900' => 'mdo', 'Medtr1g047840' => 'mtr', 'Medtr1g063830' => 'mtr', 'Medtr2g097570' => 'mtr', 'Medtr3g067980' => 'mtr', 'Medtr4g064520' => 'mtr', 'Medtr5g080260' => 'mtr', 'Medtr7g101850' => 'mtr', 'Medtr7g117490' => 'mtr', 'Medtr8g023610' => 'mtr', 'MELO3C019818.2' => 'cme', 'MELO3C020615.2' => 'cme', 'MELO3C021616.2' => 'cme', 'MELO3C023874.2' => 'cme', 'MELO3C024301.2' => 'cme', 'MELO3C025900.2' => 'cme', 'Migut.B01170' => 'egut', 'Migut.D00904' => 'egut', 'Migut.F01456' => 'egut', 'Migut.F01961' => 'egut', 'Migut.I01146' => 'egut', 'Migut.J00518' => 'egut', 'Migut.L01694' => 'egut', 'MSTRG.21203' => 'ama', 'Nn2g11165' => 'nnu', 'Nn2g11570' => 'nnu', 'Nn2g13402' => 'nnu', 'Nn2g13768' => 'nnu', 'Nn3g17551' => 'nnu', 'Nn6g31497' => 'nnu', 'Oeu012944.2' => 'oeu', 'Oeu045612.1' => 'oeu', 'Oeu053887.1' => 'oeu', 'Os01g0844200' => 'osa', 'Os01g0972300' => 'osa', 'Os03g0272900' => 'osa', 'Os05g0110200' => 'osa', 'Os05g0458200' => 'osa', 'Os12g0573600' => 'osa', 'PGR102G0519' => 'pgr', 'PGR119G2183' => 'pgr', 'PGSC0003DMG400006357' => 'stu', 'PGSC0003DMG400009157' => 'stu', 'Phvul.001G178700' => 'pvu', 'Phvul.001G233300' => 'pvu', 'Phvul.007G098400' => 'pvu', 'Phvul.007G098500' => 'pvu', 'Phvul.007G235700' => 'pvu', 'Phvul.008G191701' => 'pvu', 'Phvul.009G260600' => 'pvu', 'Phvul.010G121900' => 'pvu', 'Phvul.011G062700' => 'pvu', 'Phvul.L007243' => 'pvu', 'Potri.001G161200' => 'ptr', 'Potri.001G242800' => 'ptr', 'Potri.002G235101' => 'ptr', 'Potri.003G073900' => 'ptr', 'Potri.006G125600' => 'ptr', 'Potri.008G035900' => 'ptr', 'Potri.008G057800' => 'ptr', 'Potri.009G034300' => 'ptr', 'Potri.010G201700' => 'ptr', 'Potri.010G226250' => 'ptr', 'Prupe.2G209600' => 'ppe', 'Prupe.2G237800' => 'ppe', 'Prupe.3G029700' => 'ppe', 'Prupe.6G072200' => 'ppe', 'Prupe.6G233800' => 'ppe', 'Psat3g042400' => 'psa', 'PSO135G0377' => 'pso', 'PSO274G0001' => 'pso', 'PSO513G0025' => 'pso', 'QL08p060355' => 'qlo', 'RcHm_v2.0_Chr1g0362751' => 'rch', 'RcHm_v2.0_Chr1g0367921' => 'rch', 'RcHm_v2.0_Chr2g0148241' => 'rch', 'RcHm_v2.0_Chr3g0470051' => 'rch', 'RcHm_v2.0_Chr5g0065921' => 'rch', 'Rhsim01G0230800' => 'rsi', 'Rhsim03G0133500' => 'rsi', 'Sabra08G0042400' => 'sbr', 'SalBow3G1548' => 'sbo', 'SalBow6G2192' => 'sbo', 'SalBow6G6345' => 'sbo', 'SalBow7G1955' => 'sbo', 'Sc10g0001700' => 'sci', 'Sc12g0001300' => 'sci', 'Sc21g0005940' => 'sci', 'Sed0000866' => 'sed', 'Sed0002507' => 'sed', 'Sed0003934' => 'sed', 'Sed0008013' => 'sed', 'Sed0008951' => 'sed', 'Sed0009419' => 'sed', 'Sed0019804' => 'sed', 'Sed0020721' => 'sed', 'Sed0021325' => 'sed', 'Sed0022297' => 'sed', 'Sed0023003' => 'sed', 'SHI12464' => 'shi', 'Solyc06g076320.1' => 'sly', 'Sp4g21960' => 'spa', 'THA.LOC104810035' => 'tha', 'THA.LOC104810403' => 'tha', 'THA.LOC104822609' => 'tha', 'THA.LOC109116388' => 'tha', 'THA.LOC109117081' => 'tha', 'Thecc.06G132000' => 'tca', 'Thecc.09G317800' => 'tca', 'Thecc.10G036800' => 'tca', 'Thecc.10G082100' => 'tca', 'Thhalv10010948m.g' => 'esa', 'Thhalv10017695m.g' => 'esa', 'Thhalv10017949m.g' => 'esa', 'TPR.G15833' => 'tpr', 'TPR.G20214' => 'tpr', 'TPR.G23565' => 'tpr', 'TPR.G26464' => 'tpr', 'TPR.G3500' => 'tpr', 'TPR.G5599' => 'tpr', 'TPR.G9363' => 'tpr', 'TWI31G0218' => 'twi', 'TWI74G0876' => 'twi', 'TWI79G1693' => 'twi', 'unitig_746.g26724' => 'ugi', 'unitig_8.g4710' => 'ugi', 'unitig_899.g15255' => 'ugi', 'VMungo0720G3116' => 'vmu', 'Zm00001eb136340' => 'zma', 'Zm00001eb355880' => 'zma', 'Zm00001eb362230' => 'zma', 'Zm00001eb367930' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001415' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001415' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001415' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001415' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151