Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p39330 Brassica napus
A03p20360 Brassica napus
A03p38770 Brassica napus
A04p04410 Brassica napus
A04p28260 Brassica napus
A04p30340 Brassica napus
A05p06700 Brassica napus
A05p08830 Brassica napus
A05p35030 Brassica napus
A07p21460 Brassica napus
A08p01440 Brassica napus
A09p46240 Brassica napus
A09p48520 Brassica napus
A10p06020 Brassica napus
Aa31LG5G22210 Aethionema arabicum
Actinidia02936 Actinidia chinensis
Ah.08g211680 Amaranthus hybridus
Ah.08g219870 Amaranthus hybridus
Ah.15g098480 Amaranthus hybridus
AL1G62400 Arabidopsis lyrata
AL3G26700 Arabidopsis lyrata
AL4G23680 Arabidopsis lyrata
AL4G33230 Arabidopsis lyrata
AL4G37150 Arabidopsis lyrata
AL5G34120 Arabidopsis lyrata
AL5G36670 Arabidopsis lyrata
Aqoxy2G02269 Aquilegia oxysepala
Aqoxy7G04200 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CC2P36 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D6EZ89 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S2C0P1 Arachis hypogaea
AT1G53708 Arabidopsis thaliana
AT2G29125 Arabidopsis thaliana
AT2G36985 Arabidopsis thaliana
AT2G39705 Arabidopsis thaliana
AT3G14362 Arabidopsis thaliana
AT3G53232 Arabidopsis thaliana
AT3G55515 Arabidopsis thaliana
ATR0626G034 Amborella trichopoda
Atru.chr1.4181 Acer truncatum
Atru.chr12.418 Acer truncatum
Atru.chr3.3969 Acer truncatum
BcaB01g00087 Brassica carinata
BcaB01g00298 Brassica carinata
BcaB01g00299 Brassica carinata
BcaB01g03804 Brassica carinata
BcaB02g08412 Brassica carinata
BcaB02g08413 Brassica carinata
BcaB02g09096 Brassica carinata
BcaB02g09311 Brassica carinata
BcaB06g28285 Brassica carinata
BcaB06g28286 Brassica carinata
BcaB06g28964 Brassica carinata
BcaB06g29109 Brassica carinata
BcaC01g05622 Brassica carinata
BcaC02g07426 Brassica carinata
BcaC02g07562 Brassica carinata
BcaC02g07563 Brassica carinata
BcaC02g07564 Brassica carinata
BcaC02g07565 Brassica carinata
BcaC02g08109 Brassica carinata
BcaC02g09763 Brassica carinata
BcaC02g11823 Brassica carinata
BcaC02g11824 Brassica carinata
BcaC02g12100 Brassica carinata
BcaC07g39683 Brassica carinata
BcaC07g39877 Brassica carinata
BcaC07g41995 Brassica carinata
BolC1t04969H Brassica oleracea
BolC3t14783H Brassica oleracea
BolC3t16958H Brassica oleracea
BolC3t21494H Brassica oleracea
BolC4t22402H Brassica oleracea
BolC4t22690H Brassica oleracea
BolC4t25114H Brassica oleracea
BolC4t28054H Brassica oleracea
BolC4t28246H Brassica oleracea
BolC5t33977H Brassica oleracea
BolC6t36025H Brassica oleracea
BolC8t50454H Brassica oleracea
BolC8t50708H Brassica oleracea
BolC8t52582H Brassica oleracea
BraA01t03976Z Brassica rapa
BraA03t11281Z Brassica rapa
BraA03t13025Z Brassica rapa
BraA04t16154Z Brassica rapa
BraA04t18474Z Brassica rapa
BraA05t19637Z Brassica rapa
BraA05t19850Z Brassica rapa
BraA05t22317Z Brassica rapa
BraA07t29833Z Brassica rapa
BraA08t32195Z Brassica rapa
BraA09t40087Z Brassica rapa
BraA09t40304Z Brassica rapa
BraA10t42864Z Brassica rapa
C01p50150 Brassica napus
C03p23940 Brassica napus
C04p07830 Brassica napus
C04p10960 Brassica napus
C04p36850 Brassica napus
C04p65620 Brassica napus
C04p67490 Brassica napus
C05p52990 Brassica napus
C08p28460 Brassica napus
C08p30820 Brassica napus
C08p50550 Brassica napus
CAN.G1366.20 Capsicum annuum
CAN.G790.46 Capsicum annuum
CAN.G900.45 Capsicum annuum
CANSAT54G2158 Cannabis sativa
CANSAT56G0089 Cannabis sativa
CANSAT56G2970 Cannabis sativa
CANSAT80G1980 Cannabis sativa
CARHR089420 Cardamine hirsuta
CARHR134540 Cardamine hirsuta
CARHR163060 Cardamine hirsuta
CARHR165570 Cardamine hirsuta
Carub.0001s4298 Capsella rubella
Carub.0003s1407 Capsella rubella
Carub.0004s1883 Capsella rubella
Carub.0004s2175 Capsella rubella
Carub.0005s1977 Capsella rubella
Carub.0005s2224 Capsella rubella
Ca_05883_v3 Cicer arietinum L.
Ca_23470_v3 Cicer arietinum L.
Cc01_g13180 Coffea canephora
Cc02_g07600 Coffea canephora
Cfa001452 Carpinus fangiana
Cfa011527 Carpinus fangiana
Ciclev10030229m.g Citrus clementina
Ciclev10033183m.g Citrus clementina
CiPaw.01G210100 Carya illinoinensis
CiPaw.01G269600 Carya illinoinensis
CiPaw.01G289500 Carya illinoinensis
CiPaw.02G172500 Carya illinoinensis
CiPaw.02G185400 Carya illinoinensis
CiPaw.10G130800 Carya illinoinensis
CiPaw.13G091000 Carya illinoinensis
CiPaw.14G067100 Carya illinoinensis
ClCG02G019980 Citrullus lanatus
ClCG03G001360 Citrullus lanatus
ClCG04G009250 Citrullus lanatus
ClCG07G003480 Citrullus lanatus
ClCG08G007660 Citrullus lanatus
ClCG09G019600 Citrullus lanatus
COL.COLO4_17147 Corchorus olitorius
COL.COLO4_18559 Corchorus olitorius
COL.COLO4_26977 Corchorus olitorius
COL.COLO4_30888 Corchorus olitorius
Cpa.g.sc157.2 Carica papaya
Cpa.g.sc81.113 Carica papaya
CsaV3_1G034460 Cucumis sativus L.
CsaV3_4G003150 Cucumis sativus L.
CsaV3_5G008210 Cucumis sativus L.
CsaV3_5G026780 Cucumis sativus L.
CsaV3_6G036630 Cucumis sativus L.
CsaV3_6G039840 Cucumis sativus L.
CsaV3_7G033880 Cucumis sativus L.
CSS0013409 Camellia sinensis var. sinensis
CSS0014027 Camellia sinensis var. sinensis
CSS0026842 Camellia sinensis var. sinensis
CSS0027316 Camellia sinensis var. sinensis
DCAR_005958 Daucus carota
DCAR_020825 Daucus carota
DCAR_022634 Daucus carota
DCAR_027603 Daucus carota
Dinv37809 Davidia involucrata
Duzib114G0513 Durio zibethinus
Duzib128G0356 Durio zibethinus
Duzib128G1683 Durio zibethinus
Duzib150G0909 Durio zibethinus
Duzib168G2106 Durio zibethinus
Duzib170G0931 Durio zibethinus
Duzib192G0302 Durio zibethinus
ECA238G4842 Erigeron canadensis
EL10Ac7g16050 Beta vulgaris
Eucgr.J01236 Eucalyptus grandis
FAN01G1035 Fragaria x ananassa
FAN01G1619 Fragaria x ananassa
FAN03G1064 Fragaria x ananassa
FAN05G3971 Fragaria x ananassa
FAN06G1409 Fragaria x ananassa
FAN06G4365 Fragaria x ananassa
FAN10G0897 Fragaria x ananassa
FAN14G2263 Fragaria x ananassa
FAN16G2514 Fragaria x ananassa
Glyma.02G248900 Glycine max
Glyma.03G182700 Glycine max
Glyma.07G047000 Glycine max
Glyma.10G057200 Glycine max
Glyma.10G122700 Glycine max
Glyma.10G208400 Glycine max
Glyma.10G208500 Glycine max
Glyma.11G137600 Glycine max
Glyma.11G220000 Glycine max
Glyma.13G143700 Glycine max
Glyma.13G338000 Glycine max
Glyma.14G067500 Glycine max
Glyma.15G036400 Glycine max
Glyma.16G015200 Glycine max
Glyma.18G037400 Glycine max
Glyma.18G076400 Glycine max
Glyma.19G183200 Glycine max
Glyma.20G182200 Glycine max
Glyma.20G182300 Glycine max
Gohir.A04G072400 Gossypium hirsutum
Gohir.A05G093900 Gossypium hirsutum
Gohir.A05G142400 Gossypium hirsutum
Gohir.A05G293900 Gossypium hirsutum
Gohir.A05G348600 Gossypium hirsutum
Gohir.A05G411700 Gossypium hirsutum
Gohir.A06G142100 Gossypium hirsutum
Gohir.A09G147800 Gossypium hirsutum
Gohir.A10G049600 Gossypium hirsutum
Gohir.A10G203600 Gossypium hirsutum
Gohir.A10G220900 Gossypium hirsutum
Gohir.A11G324200 Gossypium hirsutum
Gohir.A13G018500 Gossypium hirsutum
Gohir.A13G227216 Gossypium hirsutum
Gohir.D04G004300 Gossypium hirsutum
Gohir.D04G063900 Gossypium hirsutum
Gohir.D04G111000 Gossypium hirsutum
Gohir.D05G094400 Gossypium hirsutum
Gohir.D05G144700 Gossypium hirsutum
Gohir.D05G294600 Gossypium hirsutum
Gohir.D06G147900 Gossypium hirsutum
Gohir.D09G143600 Gossypium hirsutum
Gohir.D10G050300 Gossypium hirsutum
Gohir.D10G211700 Gossypium hirsutum
Gohir.D10G233100 Gossypium hirsutum
Gohir.D11G343300 Gossypium hirsutum
Gohir.D13G019500 Gossypium hirsutum
Gohir.D13G232500 Gossypium hirsutum
Gorai.006G164900 Gossypium raimondii
Gorai.007G373400 Gossypium raimondii
Gorai.009G097500 Gossypium raimondii
Gorai.009G148600 Gossypium raimondii
Gorai.009G311300 Gossypium raimondii
Gorai.009G415100 Gossypium raimondii
Gorai.010G172400 Gossypium raimondii
Gorai.011G053800 Gossypium raimondii
Gorai.011G237600 Gossypium raimondii
Gorai.011G266700 Gossypium raimondii
Gorai.012G005500 Gossypium raimondii
Gorai.012G071500 Gossypium raimondii
Gorai.013G021600 Gossypium raimondii
Gorai.013G263300 Gossypium raimondii
GSVIVG01025722001 Vitis vinifera
HanXRQChr01g0010481 Helianthus annuus
HanXRQChr02g0053421 Helianthus annuus
HanXRQChr07g0201511 Helianthus annuus
HanXRQChr09g0250171 Helianthus annuus
HanXRQChr10g0312871 Helianthus annuus
HanXRQChr11g0327601 Helianthus annuus
HanXRQChr14g0454501 Helianthus annuus
Haze_17089 Corylus avellana
Haze_24132 Corylus avellana
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla
HPP92_001492 Vanilla planifolia
HPP92_006626 Vanilla planifolia
HPP92_012600 Vanilla planifolia
HPP92_018137 Vanilla planifolia
HPP92_026000 Vanilla planifolia
HPP92_027005 Vanilla planifolia
Lalb_Chr01g0018721 Lupinus albus
Lalb_Chr02g0152101 Lupinus albus
Lalb_Chr03g0026501 Lupinus albus
Lalb_Chr04g0251121 Lupinus albus
Lalb_Chr04g0254011 Lupinus albus
Lalb_Chr10g0101041 Lupinus albus
Lalb_Chr10g0104651 Lupinus albus
Lalb_Chr15g0084661 Lupinus albus
Lalb_Chr17g0346301 Lupinus albus
Lalb_Chr18g0044821 Lupinus albus
Lalb_Chr18g0053201 Lupinus albus
Lalb_Chr19g0137921 Lupinus albus
Lalb_Chr20g0112631 Lupinus albus
Lalb_Chr25g0289021 Lupinus albus
Lj1g0014030 Lotus japonicus
Lj1g0021078 Lotus japonicus
Lj3g0004291 Lotus japonicus
Lj3g0014912 Lotus japonicus
Lj5g0008582 Lotus japonicus
LjContig00141g0017499 Lotus japonicus
Lsat_1_v5_gn_2_106661 Lactuca sativa
Lsat_1_v5_gn_2_118460 Lactuca sativa
Lsat_1_v5_gn_5_169241 Lactuca sativa
Lsat_1_v5_gn_6_25220 Lactuca sativa
Lsat_1_v5_gn_9_64901 Lactuca sativa
Manes.01G170700 Manihot esculenta
Manes.02G130200 Manihot esculenta
Manes.04G152500 Manihot esculenta
Manes.07G117800 Manihot esculenta
Manes.07G133164 Manihot esculenta
Manes.08G009400 Manihot esculenta
Manes.09G067380 Manihot esculenta
Manes.10G028700 Manihot esculenta
Manes.10G049900 Manihot esculenta
MBI05_g29691_MAGBIO Magnolia biondii
MBI14_g04657_MAGBIO Magnolia biondii
MD01G1103800 Malus domestica
MD01G1136300 Malus domestica
MD03G1087500 Malus domestica
MD04G1094700 Malus domestica
MD07G1170600 Malus domestica
MD07G1201200 Malus domestica
MD09G1171200 Malus domestica
MD11G1096600 Malus domestica
MD12G1114900 Malus domestica
Medtr1g047840 Medicago truncatula
Medtr1g063830 Medicago truncatula
Medtr2g097570 Medicago truncatula
Medtr3g067980 Medicago truncatula
Medtr4g064520 Medicago truncatula
Medtr5g080260 Medicago truncatula
Medtr7g101850 Medicago truncatula
Medtr7g117490 Medicago truncatula
Medtr8g023610 Medicago truncatula
MELO3C019818.2 Cucumis melo
MELO3C020615.2 Cucumis melo
MELO3C021616.2 Cucumis melo
MELO3C023874.2 Cucumis melo
MELO3C024301.2 Cucumis melo
MELO3C025900.2 Cucumis melo
Migut.B01170 Erythranthe guttata
Migut.D00904 Erythranthe guttata
Migut.F01456 Erythranthe guttata
Migut.F01961 Erythranthe guttata
Migut.I01146 Erythranthe guttata
Migut.J00518 Erythranthe guttata
Migut.L01694 Erythranthe guttata
MSTRG.21203 Avicennia marina
Nn2g11165 Nelumbo nucifera
Nn2g11570 Nelumbo nucifera
Nn2g13402 Nelumbo nucifera
Nn2g13768 Nelumbo nucifera
Nn3g17551 Nelumbo nucifera
Nn6g31497 Nelumbo nucifera
Oeu012944.2 Olea europaea
Oeu045612.1 Olea europaea
Oeu053887.1 Olea europaea
Os01g0844200 Oryza sativa ssp. japonica
Os01g0972300 Oryza sativa ssp. japonica
Os03g0272900 Oryza sativa ssp. japonica
Os05g0110200 Oryza sativa ssp. japonica
Os05g0458200 Oryza sativa ssp. japonica
Os12g0573600 Oryza sativa ssp. japonica
PGR102G0519 Punica granatum
PGR119G2183 Punica granatum
PGSC0003DMG400006357 Solanum tuberosum
PGSC0003DMG400009157 Solanum tuberosum
Phvul.001G178700 Phaseolus vulgaris
Phvul.001G233300 Phaseolus vulgaris
Phvul.007G098400 Phaseolus vulgaris
Phvul.007G098500 Phaseolus vulgaris
Phvul.007G235700 Phaseolus vulgaris
Phvul.008G191701 Phaseolus vulgaris
Phvul.009G260600 Phaseolus vulgaris
Phvul.010G121900 Phaseolus vulgaris
Phvul.011G062700 Phaseolus vulgaris
Phvul.L007243 Phaseolus vulgaris
Potri.001G161200 Populus trichocarpa
Potri.001G242800 Populus trichocarpa
Potri.002G235101 Populus trichocarpa
Potri.003G073900 Populus trichocarpa
Potri.006G125600 Populus trichocarpa
Potri.008G035900 Populus trichocarpa
Potri.008G057800 Populus trichocarpa
Potri.009G034300 Populus trichocarpa
Potri.010G201700 Populus trichocarpa
Potri.010G226250 Populus trichocarpa
Prupe.2G209600 Prunus persica
Prupe.2G237800 Prunus persica
Prupe.3G029700 Prunus persica
Prupe.6G072200 Prunus persica
Prupe.6G233800 Prunus persica
Psat3g042400 Pisum sativum
PSO135G0377 Papaver somniferum
PSO274G0001 Papaver somniferum
PSO513G0025 Papaver somniferum
QL08p060355 Quercus lobata
RcHm_v2.0_Chr1g0362751 Rosa chinensis
RcHm_v2.0_Chr1g0367921 Rosa chinensis
RcHm_v2.0_Chr2g0148241 Rosa chinensis
RcHm_v2.0_Chr3g0470051 Rosa chinensis
RcHm_v2.0_Chr5g0065921 Rosa chinensis
Rhsim01G0230800 Rhododendron simsii
Rhsim03G0133500 Rhododendron simsii
Sabra08G0042400 Salix brachista
SalBow3G1548 Salvia bowleyana
SalBow6G2192 Salvia bowleyana
SalBow6G6345 Salvia bowleyana
SalBow7G1955 Salvia bowleyana
Sc10g0001700 Simmondsia chinensis
Sc12g0001300 Simmondsia chinensis
Sc21g0005940 Simmondsia chinensis
Sed0000866 Sechium edule
Sed0002507 Sechium edule
Sed0003934 Sechium edule
Sed0008013 Sechium edule
Sed0008951 Sechium edule
Sed0009419 Sechium edule
Sed0019804 Sechium edule
Sed0020721 Sechium edule
Sed0021325 Sechium edule
Sed0022297 Sechium edule
Sed0023003 Sechium edule
SHI12464 Sapria himalayana
Solyc06g076320.1 Solanum lycopersicum
Sp4g21960 Schrenkiella parvula
THA.LOC104810035 Tarenaya hassleriana
THA.LOC104810403 Tarenaya hassleriana
THA.LOC104822609 Tarenaya hassleriana
THA.LOC109116388 Tarenaya hassleriana
THA.LOC109117081 Tarenaya hassleriana
Thecc.06G132000 Theobroma cacao
Thecc.09G317800 Theobroma cacao
Thecc.10G036800 Theobroma cacao
Thecc.10G082100 Theobroma cacao
Thhalv10010948m.g Eutrema salsugineum
Thhalv10017695m.g Eutrema salsugineum
Thhalv10017949m.g Eutrema salsugineum
TPR.G15833 Trifolium pratense
TPR.G20214 Trifolium pratense
TPR.G23565 Trifolium pratense
TPR.G26464 Trifolium pratense
TPR.G3500 Trifolium pratense
TPR.G5599 Trifolium pratense
TPR.G9363 Trifolium pratense
TWI31G0218 Tripterygium wilfordii
TWI74G0876 Tripterygium wilfordii
TWI79G1693 Tripterygium wilfordii
unitig_746.g26724 Utricularia gibba
unitig_8.g4710 Utricularia gibba
unitig_899.g15255 Utricularia gibba
VMungo0720G3116 Vigna mungo
Zm00001eb136340 Zea mays
Zm00001eb355880 Zea mays
Zm00001eb362230 Zea mays
Zm00001eb367930 Zea mays

User provided reference genes

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