Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001381', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '453', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p20070' => 'bna', 'A05p39070' => 'bna', 'A09p19780' => 'bna', 'A09p19940' => 'bna', 'Aa31LG1G21610' => 'aar', 'Aa31LG3G2420' => 'aar', 'Aa31LG5G21480' => 'aar', 'Aa31LG5G21490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.317' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3467' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2468' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2469' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2154' => 'aag', 'AL2G26550' => 'aly', 'AL3G21210' => 'aly', 'AL4G32470' => 'aly', 'AL6G13100' => 'aly', 'AL6G13110' => 'aly', 'AL6G13120' => 'aly', 'Aqoxy4G02820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5BA12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JV9UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B65H15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TAJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2ULVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9ZRDB' => 'arhy', 'AT2G36325' => 'ath', 'AT3G09930' => 'ath', 'AT5G03590' => 'ath', 'AT5G03600' => 'ath', 'AT5G03610' => 'ath', 'ATR0820G228' => 'atr', 'Atru.chr12.994' => 'acertr', 'Atru.chr12.995' => 'acertr', 'Atru.chr12.996' => 'acertr', 'Atru.chr8.1577' => 'acertr', 'Atru.chr8.1580' => 'acertr', 'Atru.chr8.1582' => 'acertr', 'AUR62028565' => 'cqu', 'AUR62033521' => 'cqu', 'BcaB01g03846' => 'bca', 'BcaB01g05797' => 'bca', 'BcaB05g21823' => 'bca', 'BcaB05g21824' => 'bca', 'BcaB05g21827' => 'bca', 'BcaB05g22918' => 'bca', 'BcaB07g31056' => 'bca', 'BcaB07g31070' => 'bca', 'BcaB07g31071' => 'bca', 'BcaC01g05664' => 'bca', 'BcaC03g12994' => 'bca', 'BcaC03g12995' => 'bca', 'BcaC03g12996' => 'bca', 'BcaC03g13004' => 'bca', 'BcaC03g13005' => 'bca', 'BcaC04g21977' => 'bca', 'BcaC04g21992' => 'bca', 'BcaC05g29509' => 'bca', 'BolC3t12717H' => 'bol', 'BolC3t14747H' => 'bol', 'BolC5t34467H' => 'bol', 'BolC9t55403H' => 'bol', 'BolC9t55423H' => 'bol', 'BraA02t04769Z' => 'bra', 'BraA03t11257Z' => 'bra', 'BraA05t22699Z' => 'bra', 'BraA09t37583Z' => 'bra', 'BraA09t37602Z' => 'bra', 'BraA09t37603Z' => 'bra', 'C02p01170' => 'bna', 'C03p01650' => 'bna', 'C03p23510' => 'bna', 'C05p58090' => 'bna', 'C09p25080' => 'bna', 'C09p25100' => 'bna', 'C09p25250' => 'bna', 'CAN.G397.36' => 'can', 'CAN.G730.42' => 'can', 'CANSAT56G0146' => 'cansat', 'CANSAT56G2150' => 'cansat', 'CANSAT56G4316' => 'cansat', 'CANSAT80G0513' => 'cansat', 'CARHR084460' => 'chi', 'CARHR209690' => 'chi', 'CARHR209700' => 'chi', 'CARHR209730' => 'chi', 'Carub.0002s1426' => 'cru', 'Carub.0003s0904' => 'cru', 'Carub.0004s1810' => 'cru', 'Carub.0006s0243' => 'cru', 'Carub.0006s0244' => 'cru', 'Carub.0006s0245' => 'cru', 'Carub.0006s0249' => 'cru', 'Carub.0006s0251' => 'cru', 'Carub.0006s0252' => 'cru', 'Ca_08985_v3' => 'car', 'Ca_22053_v3' => 'car', 'CBR_g31448' => 'cbr', 'Cc00_g18870' => 'ccan', 'Cc06_g05550' => 'ccan', 'CDE06G0997' => 'cde', 'CDE06G2052' => 'cde', 'CDE08G0500' => 'cde', 'Cfa016577' => 'cfa', 'Cfa016578' => 'cfa', 'Cfa016581' => 'cfa', 'Ciclev10011959m.g' => 'ccl', 'Ciclev10033495m.g' => 'ccl', 'Ciclev10033618m.g' => 'ccl', 'CiPaw.09G011200' => 'cil', 'CiPaw.09G011300' => 'cil', 'CiPaw.09G011500' => 'cil', 'CiPaw.10G007600' => 'cil', 'CiPaw.10G007700' => 'cil', 'CiPaw.10G007800' => 'cil', 'CiPaw.10G007900' => 'cil', 'CiPaw.10G008000' => 'cil', 'ClCG04G009910' => 'cla', 'ClCG04G009920' => 'cla', 'ClCG04G009930' => 'cla', 'ClCG10G019120' => 'cla', 'COL.COLO4_29779' => 'col', 'COL.COLO4_38595' => 'col', 'Cpa.g.sc5.47' => 'cpa', 'CsaV3_3G037140' => 'csa', 'CsaV3_6G040560' => 'csa', 'CsaV3_6G040570' => 'csa', 'CsaV3_6G040580' => 'csa', 'CSS0005027' => 'camsi', 'CSS0012848' => 'camsi', 'CSS0041359' => 'camsi', 'DCAR_009152' => 'dca', 'Dinv14518' => 'din', 'Dinv17089' => 'din', 'Dinv20787' => 'din', 'Dinv21225' => 'din', 'Dinv31665' => 'din', 'Duzib093G1251' => 'dzi', 'Duzib106G1088' => 'dzi', 'Duzib128G1491' => 'dzi', 'EL10Ac7g16946' => 'bvu', 'Eucgr.A01521' => 'egr', 'Eucgr.G02700' => 'egr', 'Eucgr.K02058' => 'egr', 'Eucgr.K02059' => 'egr', 'FAN01G0469' => 'fan', 'FAN02G2318' => 'fan', 'FAN02G2533' => 'fan', 'FAN02G2846' => 'fan', 'FAN03G0810' => 'fan', 'FAN06G0876' => 'fan', 'FAN10G0210' => 'fan', 'FAN14G2127' => 'fan', 'FAN14G3804' => 'fan', 'FAN14G4188' => 'fan', 'FAN14G4710' => 'fan', 'FvH4_6g18290' => 'fve', 'FvH4_6g18330' => 'fve', 'FvH4_6g18350' => 'fve', 'FvH4_7g05761' => 'fve', 'FvH4_7g05772' => 'fve', 'Glyma.03G193600' => 'gma', 'Glyma.06G251900' => 'gma', 'Glyma.10G070500' => 'gma', 'Glyma.10G203350' => 'gma', 'Glyma.13G152950' => 'gma', 'Glyma.19G193500' => 'gma', 'Gohir.A01G207400' => 'ghi', 'Gohir.A04G064400' => 'ghi', 'Gohir.A09G171000' => 'ghi', 'Gohir.A12G091400' => 'ghi', 'Gohir.D01G196900' => 'ghi', 'Gohir.D04G101800' => 'ghi', 'Gohir.D09G166700' => 'ghi', 'Gohir.D12G091300' => 'ghi', 'Gorai.002G241000' => 'gra', 'Gorai.006G188500' => 'gra', 'Gorai.008G098800' => 'gra', 'Gorai.009G405200' => 'gra', 'GSVIVG01011220001' => 'vvi', 'GSVIVG01011222001' => 'vvi', 'GSVIVG01011232001' => 'vvi', 'GSVIVG01011239001' => 'vvi', 'GSVIVG01011247001' => 'vvi', 'GSVIVG01033808001' => 'vvi', 'HanXRQChr02g0051281' => 'han', 'HanXRQChr02g0051441' => 'han', 'HanXRQChr08g0217821' => 'han', 'HanXRQChr09g0255881' => 'han', 'HanXRQChr13g0401951' => 'han', 'Haze_19574' => 'cav', 'Haze_19575' => 'cav', 'Haze_19581' => 'cav', 'Hma1.2p1_0084F.1_g043520' => 'hma', 'Hma1.2p1_0246F.1_g101630' => 'hma', 'Hund03970' => 'sun', 'Hund06775' => 'sun', 'Lalb_Chr01g0018251' => 'lal', 'Lalb_Chr02g0151481' => 'lal', 'Lalb_Chr02g0151491' => 'lal', 'Lalb_Chr02g0151501' => 'lal', 'Lalb_Chr02g0151511' => 'lal', 'Lalb_Chr02g0151521' => 'lal', 'Lalb_Chr02g0151531' => 'lal', 'Lalb_Chr02g0151541' => 'lal', 'Lalb_Chr02g0151551' => 'lal', 'Lalb_Chr02g0151561' => 'lal', 'Lalb_Chr02g0151571' => 'lal', 'Lalb_Chr02g0151581' => 'lal', 'Lalb_Chr02g0151591' => 'lal', 'Lalb_Chr02g0151601' => 'lal', 'Lalb_Chr02g0151611' => 'lal', 'Lalb_Chr02g0151621' => 'lal', 'Lalb_Chr02g0151631' => 'lal', 'Lalb_Chr02g0151691' => 'lal', 'Lalb_Chr02g0155031' => 'lal', 'Lalb_Chr21g0313291' => 'lal', 'Lalb_Chr25g0288511' => 'lal', 'Lj1g0011779' => 'lja', 'Lj1g0021660' => 'lja', 'Lj2A134T53' => 'lonja', 'Lj2C30T14' => 'lonja', 'Lj3A999G44' => 'lonja', 'Lj5g0008591' => 'lja', 'Lj5g0012510' => 'lja', 'Lj5g0016287' => 'lja', 'Lj5g0017834' => 'lja', 'Lj5g0024260' => 'lja', 'Lj5g0028235' => 'lja', 'Lsat_1_v5_gn_6_24301' => 'lsa', 'Lsat_1_v5_gn_8_23801' => 'lsa', 'Manes.08G023700' => 'mes', 'Manes.09G057000' => 'mes', 'Manes.10G057800' => 'mes', 'Mapoly0009s0242' => 'mpo', 'Mapoly0016s0185' => 'mpo', 'Mapoly0053s0104' => 'mpo', 'MBI17_g16885_MAGBIO' => 'mbi', 'MBI17_g16886_MAGBIO' => 'mbi', 'MD02G1255500' => 'mdo', 'MD07G1066000' => 'mdo', 'MD12G1022800' => 'mdo', 'MD14G1019600' => 'mdo', 'Medtr1g060490' => 'mtr', 'Medtr1g060500' => 'mtr', 'Medtr1g060520' => 'mtr', 'Medtr1g060530' => 'mtr', 'Medtr1g092690' => 'mtr', 'Medtr1g092710' => 'mtr', 'Medtr1g092740' => 'mtr', 'Medtr1g092750' => 'mtr', 'Medtr1g092760' => 'mtr', 'Medtr7g104220' => 'mtr', 'MELO3C009459.2' => 'cme', 'MELO3C024531.2' => 'cme', 'MELO3C024532.2' => 'cme', 'MELO3C024533.2' => 'cme', 'MELO3C024534.2' => 'cme', 'Migut.J01060' => 'egut', 'Migut.J01061' => 'egut', 'Migut.J01062' => 'egut', 'Migut.J01063' => 'egut', 'Migut.J01064' => 'egut', 'MSTRG.19247' => 'ama', 'MSTRG.5826' => 'ama', 'MSTRG.9099' => 'ama', 'Nitab4.5_0000794g0060' => 'nta', 'Nitab4.5_0001437g0200' => 'nta', 'Nitab4.5_0002400g0050' => 'nta', 'Nitab4.5_0010239g0010' => 'nta', 'Nn2g14091' => 'nnu', 'Nn2g14093' => 'nnu', 'Nn2g14096' => 'nnu', 'Nn2g14097' => 'nnu', 'Nn2g14098' => 'nnu', 'Nn2g14100' => 'nnu', 'Nn2g14101' => 'nnu', 'Nn6g34968' => 'nnu', 'Nn6g34969' => 'nnu', 'Nn6g34970' => 'nnu', 'Nn6g34971' => 'nnu', 'Nn6g34974' => 'nnu', 'Oeu026189.1' => 'oeu', 'Oeu030895.1' => 'oeu', 'Oeu056912.1' => 'oeu', 'Os04g0650200' => 'osa', 'Os09g0567800' => 'osa', 'Peaxi162Scf00036g00217' => 'pax', 'Peaxi162Scf00173g00091' => 'pax', 'PGR004G0732' => 'pgr', 'PGR142G0098' => 'pgr', 'PGR142G1676' => 'pgr', 'PGR142G2526' => 'pgr', 'PGR142G3811' => 'pgr', 'PGR142G4029' => 'pgr', 'PGSC0003DMG400008961' => 'stu', 'PGSC0003DMG400019470' => 'stu', 'Phvul.001G188600' => 'pvu', 'Phvul.007G103600' => 'pvu', 'Phvul.007G103700' => 'pvu', 'Phvul.007G228600' => 'pvu', 'Potri.001G406500' => 'ptr', 'Potri.005G053100' => 'ptr', 'Potri.010G230100' => 'ptr', 'Potri.010G236800' => 'ptr', 'Potri.010G236951' => 'ptr', 'Potri.010G237000' => 'ptr', 'Pp3c10_5750' => 'ppa', 'Pp3c11_12330' => 'ppa', 'Pp3c14_4080' => 'ppa', 'Pp3c1_16800' => 'ppa', 'Pp3c1_2040' => 'ppa', 'Pp3c1_22780' => 'ppa', 'Pp3c2_17490' => 'ppa', 'Pp3c2_23550' => 'ppa', 'Pp3c2_30910' => 'ppa', 'Pp3c2_33980' => 'ppa', 'Pp3c6_1880' => 'ppa', 'Pp3c7_22870' => 'ppa', 'Prupe.2G080100' => 'ppe', 'Prupe.2G080200' => 'ppe', 'Prupe.2G080500' => 'ppe', 'Prupe.2G080800' => 'ppe', 'Prupe.2G081000' => 'ppe', 'Prupe.7G114000' => 'ppe', 'Psat0s1572g0040' => 'psa', 'Psat0s3683g0040' => 'psa', 'Psat0s3683g0080' => 'psa', 'Psat3g034560' => 'psa', 'Psat3g053480' => 'psa', 'Psat6g081800' => 'psa', 'Psat6g081880' => 'psa', 'Psat6g177360' => 'psa', 'Psat6g177400' => 'psa', 'Psat6g177440' => 'psa', 'Psat6g177520' => 'psa', 'PSO339G1207' => 'pso', 'PSO339G1693' => 'pso', 'PSO339G3644' => 'pso', 'PSO384G1098' => 'pso', 'PSO384G2006' => 'pso', 'PSO384G2773' => 'pso', 'PSO384G2987' => 'pso', 'PSO425G0023' => 'pso', 'PSO425G0031' => 'pso', 'PSO425G0053' => 'pso', 'QL04p048518' => 'qlo', 'QL07p039494' => 'qlo', 'QL07p039507' => 'qlo', 'QL07p039525' => 'qlo', 'RcHm_v2.0_Chr1g0332821' => 'rch', 'RcHm_v2.0_Chr1g0332841' => 'rch', 'RcHm_v2.0_Chr3g0472731' => 'rch', 'RcHm_v2.0_Chr3g0472801' => 'rch', 'RcHm_v2.0_Chr3g0472831' => 'rch', 'Rhsim03G0077500' => 'rsi', 'Rhsim03G0077600' => 'rsi', 'Rhsim03G0077800' => 'rsi', 'Rhsim03G0077900' => 'rsi', 'Rhsim03G0079700' => 'rsi', 'Rhsim03G0101300' => 'rsi', 'Sabra10G0178500' => 'sbr', 'Sabra10G0183700' => 'sbr', 'Sabra10G0183900' => 'sbr', 'Sabra10G0184100' => 'sbr', 'Sabra10G0184300' => 'sbr', 'Sabra10G0184600' => 'sbr', 'Sabra10G0184700' => 'sbr', 'Sabra10G0184800' => 'sbr', 'Sabra10G0185100' => 'sbr', 'Sabra10G0185200' => 'sbr', 'Sabra10G0185300' => 'sbr', 'Sabra10G0185400' => 'sbr', 'Sabra10G0185500' => 'sbr', 'Sabra16G0267900' => 'sbr', 'Sabra16G0269800' => 'sbr', 'Sabra16G0270000' => 'sbr', 'Sabra16G0270100' => 'sbr', 'SalBow3G0308' => 'sbo', 'SalBow6G3537' => 'sbo', 'Sc02g0000990' => 'sci', 'Sc09g0005500' => 'sci', 'Sed0002253' => 'sed', 'Sed0005197' => 'sed', 'Sed0018050' => 'sed', 'Sed0018556' => 'sed', 'SEGI_10490' => 'sgi', 'SEGI_10505' => 'sgi', 'SEGI_11525' => 'sgi', 'SEGI_12869' => 'sgi', 'SEGI_15309' => 'sgi', 'SEGI_17967' => 'sgi', 'SEGI_18743' => 'sgi', 'SEGI_23111' => 'sgi', 'SEGI_23899' => 'sgi', 'SEGI_24400' => 'sgi', 'SEGI_25685' => 'sgi', 'SEGI_25938' => 'sgi', 'SEGI_27429' => 'sgi', 'SEGI_32829' => 'sgi', 'SEGI_36021' => 'sgi', 'SEGI_36818' => 'sgi', 'SEGI_39508' => 'sgi', 'SGA_v2.0_scaffold13G06760' => 'sas', 'SGA_v2.0_scaffold75G24763' => 'sas', 'SHI21297' => 'shi', 'Solyc11g007180.3' => 'sly', 'Sopen09g004460' => 'spe', 'Sopen11g003100' => 'spe', 'Sp2g03340' => 'spa', 'Sp2g07320' => 'spa', 'Sp3g08290' => 'spa', 'Sp4g18570' => 'spa', 'Sp6g39140' => 'spa', 'Sp6g39150' => 'spa', 'Sp6g39160' => 'spa', 'SpUn0101_0040' => 'spa', 'TAR633G0764' => 'tar', 'TAR636G3325' => 'tar', 'THA.LOC104826927' => 'tha', 'THA.LOC104827516' => 'tha', 'Thecc.05G085700' => 'tca', 'Thhalv10013924m.g' => 'esa', 'Thhalv10013966m.g' => 'esa', 'Thhalv10022090m.g' => 'esa', 'Thhalv10024112m.g' => 'esa', 'TPR.G11005' => 'tpr', 'TPR.G18682' => 'tpr', 'TPR.G18685' => 'tpr', 'TPR.G18701' => 'tpr', 'TPR.G18703' => 'tpr', 'TPR.G19524' => 'tpr', 'TPR.G32995' => 'tpr', 'TPR.G35427' => 'tpr', 'TWI15G0335' => 'twi', 'TWI38G1588' => 'twi', 'TWI38G1650' => 'twi', 'TWI38G2041' => 'twi', 'TWI53G1983' => 'twi', 'TWI63G0365' => 'twi', 'TWI63G1599' => 'twi', 'TWI74G0331' => 'twi', 'unitig_22.g5123' => 'ugi', 'unitig_22.g5124' => 'ugi', 'vmacro07391' => 'vma', 'vmacro07392' => 'vma', 'vmacro07393' => 'vma', 'vmacro23531' => 'vma', 'VMungo0720G0574' => 'vmu', 'VMungo0720G0666' => 'vmu', 'VMungo0720G1711' => 'vmu', 'VMungo1383G0419' => 'vmu', 'Zm00001eb121580' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001381', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001381' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001381', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '453', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001381' ) ), 'genes' => array( 'A03p20070' => 'bna', 'A05p39070' => 'bna', 'A09p19780' => 'bna', 'A09p19940' => 'bna', 'Aa31LG1G21610' => 'aar', 'Aa31LG3G2420' => 'aar', 'Aa31LG5G21480' => 'aar', 'Aa31LG5G21490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.317' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3467' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2468' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2469' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2154' => 'aag', 'AL2G26550' => 'aly', 'AL3G21210' => 'aly', 'AL4G32470' => 'aly', 'AL6G13100' => 'aly', 'AL6G13110' => 'aly', 'AL6G13120' => 'aly', 'Aqoxy4G02820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5BA12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JV9UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B65H15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TAJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2ULVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9ZRDB' => 'arhy', 'AT2G36325' => 'ath', 'AT3G09930' => 'ath', 'AT5G03590' => 'ath', 'AT5G03600' => 'ath', 'AT5G03610' => 'ath', 'ATR0820G228' => 'atr', 'Atru.chr12.994' => 'acertr', 'Atru.chr12.995' => 'acertr', 'Atru.chr12.996' => 'acertr', 'Atru.chr8.1577' => 'acertr', 'Atru.chr8.1580' => 'acertr', 'Atru.chr8.1582' => 'acertr', 'AUR62028565' => 'cqu', 'AUR62033521' => 'cqu', 'BcaB01g03846' => 'bca', 'BcaB01g05797' => 'bca', 'BcaB05g21823' => 'bca', 'BcaB05g21824' => 'bca', 'BcaB05g21827' => 'bca', 'BcaB05g22918' => 'bca', 'BcaB07g31056' => 'bca', 'BcaB07g31070' => 'bca', 'BcaB07g31071' => 'bca', 'BcaC01g05664' => 'bca', 'BcaC03g12994' => 'bca', 'BcaC03g12995' => 'bca', 'BcaC03g12996' => 'bca', 'BcaC03g13004' => 'bca', 'BcaC03g13005' => 'bca', 'BcaC04g21977' => 'bca', 'BcaC04g21992' => 'bca', 'BcaC05g29509' => 'bca', 'BolC3t12717H' => 'bol', 'BolC3t14747H' => 'bol', 'BolC5t34467H' => 'bol', 'BolC9t55403H' => 'bol', 'BolC9t55423H' => 'bol', 'BraA02t04769Z' => 'bra', 'BraA03t11257Z' => 'bra', 'BraA05t22699Z' => 'bra', 'BraA09t37583Z' => 'bra', 'BraA09t37602Z' => 'bra', 'BraA09t37603Z' => 'bra', 'C02p01170' => 'bna', 'C03p01650' => 'bna', 'C03p23510' => 'bna', 'C05p58090' => 'bna', 'C09p25080' => 'bna', 'C09p25100' => 'bna', 'C09p25250' => 'bna', 'CAN.G397.36' => 'can', 'CAN.G730.42' => 'can', 'CANSAT56G0146' => 'cansat', 'CANSAT56G2150' => 'cansat', 'CANSAT56G4316' => 'cansat', 'CANSAT80G0513' => 'cansat', 'CARHR084460' => 'chi', 'CARHR209690' => 'chi', 'CARHR209700' => 'chi', 'CARHR209730' => 'chi', 'Carub.0002s1426' => 'cru', 'Carub.0003s0904' => 'cru', 'Carub.0004s1810' => 'cru', 'Carub.0006s0243' => 'cru', 'Carub.0006s0244' => 'cru', 'Carub.0006s0245' => 'cru', 'Carub.0006s0249' => 'cru', 'Carub.0006s0251' => 'cru', 'Carub.0006s0252' => 'cru', 'Ca_08985_v3' => 'car', 'Ca_22053_v3' => 'car', 'CBR_g31448' => 'cbr', 'Cc00_g18870' => 'ccan', 'Cc06_g05550' => 'ccan', 'CDE06G0997' => 'cde', 'CDE06G2052' => 'cde', 'CDE08G0500' => 'cde', 'Cfa016577' => 'cfa', 'Cfa016578' => 'cfa', 'Cfa016581' => 'cfa', 'Ciclev10011959m.g' => 'ccl', 'Ciclev10033495m.g' => 'ccl', 'Ciclev10033618m.g' => 'ccl', 'CiPaw.09G011200' => 'cil', 'CiPaw.09G011300' => 'cil', 'CiPaw.09G011500' => 'cil', 'CiPaw.10G007600' => 'cil', 'CiPaw.10G007700' => 'cil', 'CiPaw.10G007800' => 'cil', 'CiPaw.10G007900' => 'cil', 'CiPaw.10G008000' => 'cil', 'ClCG04G009910' => 'cla', 'ClCG04G009920' => 'cla', 'ClCG04G009930' => 'cla', 'ClCG10G019120' => 'cla', 'COL.COLO4_29779' => 'col', 'COL.COLO4_38595' => 'col', 'Cpa.g.sc5.47' => 'cpa', 'CsaV3_3G037140' => 'csa', 'CsaV3_6G040560' => 'csa', 'CsaV3_6G040570' => 'csa', 'CsaV3_6G040580' => 'csa', 'CSS0005027' => 'camsi', 'CSS0012848' => 'camsi', 'CSS0041359' => 'camsi', 'DCAR_009152' => 'dca', 'Dinv14518' => 'din', 'Dinv17089' => 'din', 'Dinv20787' => 'din', 'Dinv21225' => 'din', 'Dinv31665' => 'din', 'Duzib093G1251' => 'dzi', 'Duzib106G1088' => 'dzi', 'Duzib128G1491' => 'dzi', 'EL10Ac7g16946' => 'bvu', 'Eucgr.A01521' => 'egr', 'Eucgr.G02700' => 'egr', 'Eucgr.K02058' => 'egr', 'Eucgr.K02059' => 'egr', 'FAN01G0469' => 'fan', 'FAN02G2318' => 'fan', 'FAN02G2533' => 'fan', 'FAN02G2846' => 'fan', 'FAN03G0810' => 'fan', 'FAN06G0876' => 'fan', 'FAN10G0210' => 'fan', 'FAN14G2127' => 'fan', 'FAN14G3804' => 'fan', 'FAN14G4188' => 'fan', 'FAN14G4710' => 'fan', 'FvH4_6g18290' => 'fve', 'FvH4_6g18330' => 'fve', 'FvH4_6g18350' => 'fve', 'FvH4_7g05761' => 'fve', 'FvH4_7g05772' => 'fve', 'Glyma.03G193600' => 'gma', 'Glyma.06G251900' => 'gma', 'Glyma.10G070500' => 'gma', 'Glyma.10G203350' => 'gma', 'Glyma.13G152950' => 'gma', 'Glyma.19G193500' => 'gma', 'Gohir.A01G207400' => 'ghi', 'Gohir.A04G064400' => 'ghi', 'Gohir.A09G171000' => 'ghi', 'Gohir.A12G091400' => 'ghi', 'Gohir.D01G196900' => 'ghi', 'Gohir.D04G101800' => 'ghi', 'Gohir.D09G166700' => 'ghi', 'Gohir.D12G091300' => 'ghi', 'Gorai.002G241000' => 'gra', 'Gorai.006G188500' => 'gra', 'Gorai.008G098800' => 'gra', 'Gorai.009G405200' => 'gra', 'GSVIVG01011220001' => 'vvi', 'GSVIVG01011222001' => 'vvi', 'GSVIVG01011232001' => 'vvi', 'GSVIVG01011239001' => 'vvi', 'GSVIVG01011247001' => 'vvi', 'GSVIVG01033808001' => 'vvi', 'HanXRQChr02g0051281' => 'han', 'HanXRQChr02g0051441' => 'han', 'HanXRQChr08g0217821' => 'han', 'HanXRQChr09g0255881' => 'han', 'HanXRQChr13g0401951' => 'han', 'Haze_19574' => 'cav', 'Haze_19575' => 'cav', 'Haze_19581' => 'cav', 'Hma1.2p1_0084F.1_g043520' => 'hma', 'Hma1.2p1_0246F.1_g101630' => 'hma', 'Hund03970' => 'sun', 'Hund06775' => 'sun', 'Lalb_Chr01g0018251' => 'lal', 'Lalb_Chr02g0151481' => 'lal', 'Lalb_Chr02g0151491' => 'lal', 'Lalb_Chr02g0151501' => 'lal', 'Lalb_Chr02g0151511' => 'lal', 'Lalb_Chr02g0151521' => 'lal', 'Lalb_Chr02g0151531' => 'lal', 'Lalb_Chr02g0151541' => 'lal', 'Lalb_Chr02g0151551' => 'lal', 'Lalb_Chr02g0151561' => 'lal', 'Lalb_Chr02g0151571' => 'lal', 'Lalb_Chr02g0151581' => 'lal', 'Lalb_Chr02g0151591' => 'lal', 'Lalb_Chr02g0151601' => 'lal', 'Lalb_Chr02g0151611' => 'lal', 'Lalb_Chr02g0151621' => 'lal', 'Lalb_Chr02g0151631' => 'lal', 'Lalb_Chr02g0151691' => 'lal', 'Lalb_Chr02g0155031' => 'lal', 'Lalb_Chr21g0313291' => 'lal', 'Lalb_Chr25g0288511' => 'lal', 'Lj1g0011779' => 'lja', 'Lj1g0021660' => 'lja', 'Lj2A134T53' => 'lonja', 'Lj2C30T14' => 'lonja', 'Lj3A999G44' => 'lonja', 'Lj5g0008591' => 'lja', 'Lj5g0012510' => 'lja', 'Lj5g0016287' => 'lja', 'Lj5g0017834' => 'lja', 'Lj5g0024260' => 'lja', 'Lj5g0028235' => 'lja', 'Lsat_1_v5_gn_6_24301' => 'lsa', 'Lsat_1_v5_gn_8_23801' => 'lsa', 'Manes.08G023700' => 'mes', 'Manes.09G057000' => 'mes', 'Manes.10G057800' => 'mes', 'Mapoly0009s0242' => 'mpo', 'Mapoly0016s0185' => 'mpo', 'Mapoly0053s0104' => 'mpo', 'MBI17_g16885_MAGBIO' => 'mbi', 'MBI17_g16886_MAGBIO' => 'mbi', 'MD02G1255500' => 'mdo', 'MD07G1066000' => 'mdo', 'MD12G1022800' => 'mdo', 'MD14G1019600' => 'mdo', 'Medtr1g060490' => 'mtr', 'Medtr1g060500' => 'mtr', 'Medtr1g060520' => 'mtr', 'Medtr1g060530' => 'mtr', 'Medtr1g092690' => 'mtr', 'Medtr1g092710' => 'mtr', 'Medtr1g092740' => 'mtr', 'Medtr1g092750' => 'mtr', 'Medtr1g092760' => 'mtr', 'Medtr7g104220' => 'mtr', 'MELO3C009459.2' => 'cme', 'MELO3C024531.2' => 'cme', 'MELO3C024532.2' => 'cme', 'MELO3C024533.2' => 'cme', 'MELO3C024534.2' => 'cme', 'Migut.J01060' => 'egut', 'Migut.J01061' => 'egut', 'Migut.J01062' => 'egut', 'Migut.J01063' => 'egut', 'Migut.J01064' => 'egut', 'MSTRG.19247' => 'ama', 'MSTRG.5826' => 'ama', 'MSTRG.9099' => 'ama', 'Nitab4.5_0000794g0060' => 'nta', 'Nitab4.5_0001437g0200' => 'nta', 'Nitab4.5_0002400g0050' => 'nta', 'Nitab4.5_0010239g0010' => 'nta', 'Nn2g14091' => 'nnu', 'Nn2g14093' => 'nnu', 'Nn2g14096' => 'nnu', 'Nn2g14097' => 'nnu', 'Nn2g14098' => 'nnu', 'Nn2g14100' => 'nnu', 'Nn2g14101' => 'nnu', 'Nn6g34968' => 'nnu', 'Nn6g34969' => 'nnu', 'Nn6g34970' => 'nnu', 'Nn6g34971' => 'nnu', 'Nn6g34974' => 'nnu', 'Oeu026189.1' => 'oeu', 'Oeu030895.1' => 'oeu', 'Oeu056912.1' => 'oeu', 'Os04g0650200' => 'osa', 'Os09g0567800' => 'osa', 'Peaxi162Scf00036g00217' => 'pax', 'Peaxi162Scf00173g00091' => 'pax', 'PGR004G0732' => 'pgr', 'PGR142G0098' => 'pgr', 'PGR142G1676' => 'pgr', 'PGR142G2526' => 'pgr', 'PGR142G3811' => 'pgr', 'PGR142G4029' => 'pgr', 'PGSC0003DMG400008961' => 'stu', 'PGSC0003DMG400019470' => 'stu', 'Phvul.001G188600' => 'pvu', 'Phvul.007G103600' => 'pvu', 'Phvul.007G103700' => 'pvu', 'Phvul.007G228600' => 'pvu', 'Potri.001G406500' => 'ptr', 'Potri.005G053100' => 'ptr', 'Potri.010G230100' => 'ptr', 'Potri.010G236800' => 'ptr', 'Potri.010G236951' => 'ptr', 'Potri.010G237000' => 'ptr', 'Pp3c10_5750' => 'ppa', 'Pp3c11_12330' => 'ppa', 'Pp3c14_4080' => 'ppa', 'Pp3c1_16800' => 'ppa', 'Pp3c1_2040' => 'ppa', 'Pp3c1_22780' => 'ppa', 'Pp3c2_17490' => 'ppa', 'Pp3c2_23550' => 'ppa', 'Pp3c2_30910' => 'ppa', 'Pp3c2_33980' => 'ppa', 'Pp3c6_1880' => 'ppa', 'Pp3c7_22870' => 'ppa', 'Prupe.2G080100' => 'ppe', 'Prupe.2G080200' => 'ppe', 'Prupe.2G080500' => 'ppe', 'Prupe.2G080800' => 'ppe', 'Prupe.2G081000' => 'ppe', 'Prupe.7G114000' => 'ppe', 'Psat0s1572g0040' => 'psa', 'Psat0s3683g0040' => 'psa', 'Psat0s3683g0080' => 'psa', 'Psat3g034560' => 'psa', 'Psat3g053480' => 'psa', 'Psat6g081800' => 'psa', 'Psat6g081880' => 'psa', 'Psat6g177360' => 'psa', 'Psat6g177400' => 'psa', 'Psat6g177440' => 'psa', 'Psat6g177520' => 'psa', 'PSO339G1207' => 'pso', 'PSO339G1693' => 'pso', 'PSO339G3644' => 'pso', 'PSO384G1098' => 'pso', 'PSO384G2006' => 'pso', 'PSO384G2773' => 'pso', 'PSO384G2987' => 'pso', 'PSO425G0023' => 'pso', 'PSO425G0031' => 'pso', 'PSO425G0053' => 'pso', 'QL04p048518' => 'qlo', 'QL07p039494' => 'qlo', 'QL07p039507' => 'qlo', 'QL07p039525' => 'qlo', 'RcHm_v2.0_Chr1g0332821' => 'rch', 'RcHm_v2.0_Chr1g0332841' => 'rch', 'RcHm_v2.0_Chr3g0472731' => 'rch', 'RcHm_v2.0_Chr3g0472801' => 'rch', 'RcHm_v2.0_Chr3g0472831' => 'rch', 'Rhsim03G0077500' => 'rsi', 'Rhsim03G0077600' => 'rsi', 'Rhsim03G0077800' => 'rsi', 'Rhsim03G0077900' => 'rsi', 'Rhsim03G0079700' => 'rsi', 'Rhsim03G0101300' => 'rsi', 'Sabra10G0178500' => 'sbr', 'Sabra10G0183700' => 'sbr', 'Sabra10G0183900' => 'sbr', 'Sabra10G0184100' => 'sbr', 'Sabra10G0184300' => 'sbr', 'Sabra10G0184600' => 'sbr', 'Sabra10G0184700' => 'sbr', 'Sabra10G0184800' => 'sbr', 'Sabra10G0185100' => 'sbr', 'Sabra10G0185200' => 'sbr', 'Sabra10G0185300' => 'sbr', 'Sabra10G0185400' => 'sbr', 'Sabra10G0185500' => 'sbr', 'Sabra16G0267900' => 'sbr', 'Sabra16G0269800' => 'sbr', 'Sabra16G0270000' => 'sbr', 'Sabra16G0270100' => 'sbr', 'SalBow3G0308' => 'sbo', 'SalBow6G3537' => 'sbo', 'Sc02g0000990' => 'sci', 'Sc09g0005500' => 'sci', 'Sed0002253' => 'sed', 'Sed0005197' => 'sed', 'Sed0018050' => 'sed', 'Sed0018556' => 'sed', 'SEGI_10490' => 'sgi', 'SEGI_10505' => 'sgi', 'SEGI_11525' => 'sgi', 'SEGI_12869' => 'sgi', 'SEGI_15309' => 'sgi', 'SEGI_17967' => 'sgi', 'SEGI_18743' => 'sgi', 'SEGI_23111' => 'sgi', 'SEGI_23899' => 'sgi', 'SEGI_24400' => 'sgi', 'SEGI_25685' => 'sgi', 'SEGI_25938' => 'sgi', 'SEGI_27429' => 'sgi', 'SEGI_32829' => 'sgi', 'SEGI_36021' => 'sgi', 'SEGI_36818' => 'sgi', 'SEGI_39508' => 'sgi', 'SGA_v2.0_scaffold13G06760' => 'sas', 'SGA_v2.0_scaffold75G24763' => 'sas', 'SHI21297' => 'shi', 'Solyc11g007180.3' => 'sly', 'Sopen09g004460' => 'spe', 'Sopen11g003100' => 'spe', 'Sp2g03340' => 'spa', 'Sp2g07320' => 'spa', 'Sp3g08290' => 'spa', 'Sp4g18570' => 'spa', 'Sp6g39140' => 'spa', 'Sp6g39150' => 'spa', 'Sp6g39160' => 'spa', 'SpUn0101_0040' => 'spa', 'TAR633G0764' => 'tar', 'TAR636G3325' => 'tar', 'THA.LOC104826927' => 'tha', 'THA.LOC104827516' => 'tha', 'Thecc.05G085700' => 'tca', 'Thhalv10013924m.g' => 'esa', 'Thhalv10013966m.g' => 'esa', 'Thhalv10022090m.g' => 'esa', 'Thhalv10024112m.g' => 'esa', 'TPR.G11005' => 'tpr', 'TPR.G18682' => 'tpr', 'TPR.G18685' => 'tpr', 'TPR.G18701' => 'tpr', 'TPR.G18703' => 'tpr', 'TPR.G19524' => 'tpr', 'TPR.G32995' => 'tpr', 'TPR.G35427' => 'tpr', 'TWI15G0335' => 'twi', 'TWI38G1588' => 'twi', 'TWI38G1650' => 'twi', 'TWI38G2041' => 'twi', 'TWI53G1983' => 'twi', 'TWI63G0365' => 'twi', 'TWI63G1599' => 'twi', 'TWI74G0331' => 'twi', 'unitig_22.g5123' => 'ugi', 'unitig_22.g5124' => 'ugi', 'vmacro07391' => 'vma', 'vmacro07392' => 'vma', 'vmacro07393' => 'vma', 'vmacro23531' => 'vma', 'VMungo0720G0574' => 'vmu', 'VMungo0720G0666' => 'vmu', 'VMungo0720G1711' => 'vmu', 'VMungo1383G0419' => 'vmu', 'Zm00001eb121580' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001381' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001381' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001381' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001381' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001381', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '453', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p20070' => 'bna', 'A05p39070' => 'bna', 'A09p19780' => 'bna', 'A09p19940' => 'bna', 'Aa31LG1G21610' => 'aar', 'Aa31LG3G2420' => 'aar', 'Aa31LG5G21480' => 'aar', 'Aa31LG5G21490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.317' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3467' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2468' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2469' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2154' => 'aag', 'AL2G26550' => 'aly', 'AL3G21210' => 'aly', 'AL4G32470' => 'aly', 'AL6G13100' => 'aly', 'AL6G13110' => 'aly', 'AL6G13120' => 'aly', 'Aqoxy4G02820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5BA12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JV9UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B65H15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TAJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2ULVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9ZRDB' => 'arhy', 'AT2G36325' => 'ath', 'AT3G09930' => 'ath', 'AT5G03590' => 'ath', 'AT5G03600' => 'ath', 'AT5G03610' => 'ath', 'ATR0820G228' => 'atr', 'Atru.chr12.994' => 'acertr', 'Atru.chr12.995' => 'acertr', 'Atru.chr12.996' => 'acertr', 'Atru.chr8.1577' => 'acertr', 'Atru.chr8.1580' => 'acertr', 'Atru.chr8.1582' => 'acertr', 'AUR62028565' => 'cqu', 'AUR62033521' => 'cqu', 'BcaB01g03846' => 'bca', 'BcaB01g05797' => 'bca', 'BcaB05g21823' => 'bca', 'BcaB05g21824' => 'bca', 'BcaB05g21827' => 'bca', 'BcaB05g22918' => 'bca', 'BcaB07g31056' => 'bca', 'BcaB07g31070' => 'bca', 'BcaB07g31071' => 'bca', 'BcaC01g05664' => 'bca', 'BcaC03g12994' => 'bca', 'BcaC03g12995' => 'bca', 'BcaC03g12996' => 'bca', 'BcaC03g13004' => 'bca', 'BcaC03g13005' => 'bca', 'BcaC04g21977' => 'bca', 'BcaC04g21992' => 'bca', 'BcaC05g29509' => 'bca', 'BolC3t12717H' => 'bol', 'BolC3t14747H' => 'bol', 'BolC5t34467H' => 'bol', 'BolC9t55403H' => 'bol', 'BolC9t55423H' => 'bol', 'BraA02t04769Z' => 'bra', 'BraA03t11257Z' => 'bra', 'BraA05t22699Z' => 'bra', 'BraA09t37583Z' => 'bra', 'BraA09t37602Z' => 'bra', 'BraA09t37603Z' => 'bra', 'C02p01170' => 'bna', 'C03p01650' => 'bna', 'C03p23510' => 'bna', 'C05p58090' => 'bna', 'C09p25080' => 'bna', 'C09p25100' => 'bna', 'C09p25250' => 'bna', 'CAN.G397.36' => 'can', 'CAN.G730.42' => 'can', 'CANSAT56G0146' => 'cansat', 'CANSAT56G2150' => 'cansat', 'CANSAT56G4316' => 'cansat', 'CANSAT80G0513' => 'cansat', 'CARHR084460' => 'chi', 'CARHR209690' => 'chi', 'CARHR209700' => 'chi', 'CARHR209730' => 'chi', 'Carub.0002s1426' => 'cru', 'Carub.0003s0904' => 'cru', 'Carub.0004s1810' => 'cru', 'Carub.0006s0243' => 'cru', 'Carub.0006s0244' => 'cru', 'Carub.0006s0245' => 'cru', 'Carub.0006s0249' => 'cru', 'Carub.0006s0251' => 'cru', 'Carub.0006s0252' => 'cru', 'Ca_08985_v3' => 'car', 'Ca_22053_v3' => 'car', 'CBR_g31448' => 'cbr', 'Cc00_g18870' => 'ccan', 'Cc06_g05550' => 'ccan', 'CDE06G0997' => 'cde', 'CDE06G2052' => 'cde', 'CDE08G0500' => 'cde', 'Cfa016577' => 'cfa', 'Cfa016578' => 'cfa', 'Cfa016581' => 'cfa', 'Ciclev10011959m.g' => 'ccl', 'Ciclev10033495m.g' => 'ccl', 'Ciclev10033618m.g' => 'ccl', 'CiPaw.09G011200' => 'cil', 'CiPaw.09G011300' => 'cil', 'CiPaw.09G011500' => 'cil', 'CiPaw.10G007600' => 'cil', 'CiPaw.10G007700' => 'cil', 'CiPaw.10G007800' => 'cil', 'CiPaw.10G007900' => 'cil', 'CiPaw.10G008000' => 'cil', 'ClCG04G009910' => 'cla', 'ClCG04G009920' => 'cla', 'ClCG04G009930' => 'cla', 'ClCG10G019120' => 'cla', 'COL.COLO4_29779' => 'col', 'COL.COLO4_38595' => 'col', 'Cpa.g.sc5.47' => 'cpa', 'CsaV3_3G037140' => 'csa', 'CsaV3_6G040560' => 'csa', 'CsaV3_6G040570' => 'csa', 'CsaV3_6G040580' => 'csa', 'CSS0005027' => 'camsi', 'CSS0012848' => 'camsi', 'CSS0041359' => 'camsi', 'DCAR_009152' => 'dca', 'Dinv14518' => 'din', 'Dinv17089' => 'din', 'Dinv20787' => 'din', 'Dinv21225' => 'din', 'Dinv31665' => 'din', 'Duzib093G1251' => 'dzi', 'Duzib106G1088' => 'dzi', 'Duzib128G1491' => 'dzi', 'EL10Ac7g16946' => 'bvu', 'Eucgr.A01521' => 'egr', 'Eucgr.G02700' => 'egr', 'Eucgr.K02058' => 'egr', 'Eucgr.K02059' => 'egr', 'FAN01G0469' => 'fan', 'FAN02G2318' => 'fan', 'FAN02G2533' => 'fan', 'FAN02G2846' => 'fan', 'FAN03G0810' => 'fan', 'FAN06G0876' => 'fan', 'FAN10G0210' => 'fan', 'FAN14G2127' => 'fan', 'FAN14G3804' => 'fan', 'FAN14G4188' => 'fan', 'FAN14G4710' => 'fan', 'FvH4_6g18290' => 'fve', 'FvH4_6g18330' => 'fve', 'FvH4_6g18350' => 'fve', 'FvH4_7g05761' => 'fve', 'FvH4_7g05772' => 'fve', 'Glyma.03G193600' => 'gma', 'Glyma.06G251900' => 'gma', 'Glyma.10G070500' => 'gma', 'Glyma.10G203350' => 'gma', 'Glyma.13G152950' => 'gma', 'Glyma.19G193500' => 'gma', 'Gohir.A01G207400' => 'ghi', 'Gohir.A04G064400' => 'ghi', 'Gohir.A09G171000' => 'ghi', 'Gohir.A12G091400' => 'ghi', 'Gohir.D01G196900' => 'ghi', 'Gohir.D04G101800' => 'ghi', 'Gohir.D09G166700' => 'ghi', 'Gohir.D12G091300' => 'ghi', 'Gorai.002G241000' => 'gra', 'Gorai.006G188500' => 'gra', 'Gorai.008G098800' => 'gra', 'Gorai.009G405200' => 'gra', 'GSVIVG01011220001' => 'vvi', 'GSVIVG01011222001' => 'vvi', 'GSVIVG01011232001' => 'vvi', 'GSVIVG01011239001' => 'vvi', 'GSVIVG01011247001' => 'vvi', 'GSVIVG01033808001' => 'vvi', 'HanXRQChr02g0051281' => 'han', 'HanXRQChr02g0051441' => 'han', 'HanXRQChr08g0217821' => 'han', 'HanXRQChr09g0255881' => 'han', 'HanXRQChr13g0401951' => 'han', 'Haze_19574' => 'cav', 'Haze_19575' => 'cav', 'Haze_19581' => 'cav', 'Hma1.2p1_0084F.1_g043520' => 'hma', 'Hma1.2p1_0246F.1_g101630' => 'hma', 'Hund03970' => 'sun', 'Hund06775' => 'sun', 'Lalb_Chr01g0018251' => 'lal', 'Lalb_Chr02g0151481' => 'lal', 'Lalb_Chr02g0151491' => 'lal', 'Lalb_Chr02g0151501' => 'lal', 'Lalb_Chr02g0151511' => 'lal', 'Lalb_Chr02g0151521' => 'lal', 'Lalb_Chr02g0151531' => 'lal', 'Lalb_Chr02g0151541' => 'lal', 'Lalb_Chr02g0151551' => 'lal', 'Lalb_Chr02g0151561' => 'lal', 'Lalb_Chr02g0151571' => 'lal', 'Lalb_Chr02g0151581' => 'lal', 'Lalb_Chr02g0151591' => 'lal', 'Lalb_Chr02g0151601' => 'lal', 'Lalb_Chr02g0151611' => 'lal', 'Lalb_Chr02g0151621' => 'lal', 'Lalb_Chr02g0151631' => 'lal', 'Lalb_Chr02g0151691' => 'lal', 'Lalb_Chr02g0155031' => 'lal', 'Lalb_Chr21g0313291' => 'lal', 'Lalb_Chr25g0288511' => 'lal', 'Lj1g0011779' => 'lja', 'Lj1g0021660' => 'lja', 'Lj2A134T53' => 'lonja', 'Lj2C30T14' => 'lonja', 'Lj3A999G44' => 'lonja', 'Lj5g0008591' => 'lja', 'Lj5g0012510' => 'lja', 'Lj5g0016287' => 'lja', 'Lj5g0017834' => 'lja', 'Lj5g0024260' => 'lja', 'Lj5g0028235' => 'lja', 'Lsat_1_v5_gn_6_24301' => 'lsa', 'Lsat_1_v5_gn_8_23801' => 'lsa', 'Manes.08G023700' => 'mes', 'Manes.09G057000' => 'mes', 'Manes.10G057800' => 'mes', 'Mapoly0009s0242' => 'mpo', 'Mapoly0016s0185' => 'mpo', 'Mapoly0053s0104' => 'mpo', 'MBI17_g16885_MAGBIO' => 'mbi', 'MBI17_g16886_MAGBIO' => 'mbi', 'MD02G1255500' => 'mdo', 'MD07G1066000' => 'mdo', 'MD12G1022800' => 'mdo', 'MD14G1019600' => 'mdo', 'Medtr1g060490' => 'mtr', 'Medtr1g060500' => 'mtr', 'Medtr1g060520' => 'mtr', 'Medtr1g060530' => 'mtr', 'Medtr1g092690' => 'mtr', 'Medtr1g092710' => 'mtr', 'Medtr1g092740' => 'mtr', 'Medtr1g092750' => 'mtr', 'Medtr1g092760' => 'mtr', 'Medtr7g104220' => 'mtr', 'MELO3C009459.2' => 'cme', 'MELO3C024531.2' => 'cme', 'MELO3C024532.2' => 'cme', 'MELO3C024533.2' => 'cme', 'MELO3C024534.2' => 'cme', 'Migut.J01060' => 'egut', 'Migut.J01061' => 'egut', 'Migut.J01062' => 'egut', 'Migut.J01063' => 'egut', 'Migut.J01064' => 'egut', 'MSTRG.19247' => 'ama', 'MSTRG.5826' => 'ama', 'MSTRG.9099' => 'ama', 'Nitab4.5_0000794g0060' => 'nta', 'Nitab4.5_0001437g0200' => 'nta', 'Nitab4.5_0002400g0050' => 'nta', 'Nitab4.5_0010239g0010' => 'nta', 'Nn2g14091' => 'nnu', 'Nn2g14093' => 'nnu', 'Nn2g14096' => 'nnu', 'Nn2g14097' => 'nnu', 'Nn2g14098' => 'nnu', 'Nn2g14100' => 'nnu', 'Nn2g14101' => 'nnu', 'Nn6g34968' => 'nnu', 'Nn6g34969' => 'nnu', 'Nn6g34970' => 'nnu', 'Nn6g34971' => 'nnu', 'Nn6g34974' => 'nnu', 'Oeu026189.1' => 'oeu', 'Oeu030895.1' => 'oeu', 'Oeu056912.1' => 'oeu', 'Os04g0650200' => 'osa', 'Os09g0567800' => 'osa', 'Peaxi162Scf00036g00217' => 'pax', 'Peaxi162Scf00173g00091' => 'pax', 'PGR004G0732' => 'pgr', 'PGR142G0098' => 'pgr', 'PGR142G1676' => 'pgr', 'PGR142G2526' => 'pgr', 'PGR142G3811' => 'pgr', 'PGR142G4029' => 'pgr', 'PGSC0003DMG400008961' => 'stu', 'PGSC0003DMG400019470' => 'stu', 'Phvul.001G188600' => 'pvu', 'Phvul.007G103600' => 'pvu', 'Phvul.007G103700' => 'pvu', 'Phvul.007G228600' => 'pvu', 'Potri.001G406500' => 'ptr', 'Potri.005G053100' => 'ptr', 'Potri.010G230100' => 'ptr', 'Potri.010G236800' => 'ptr', 'Potri.010G236951' => 'ptr', 'Potri.010G237000' => 'ptr', 'Pp3c10_5750' => 'ppa', 'Pp3c11_12330' => 'ppa', 'Pp3c14_4080' => 'ppa', 'Pp3c1_16800' => 'ppa', 'Pp3c1_2040' => 'ppa', 'Pp3c1_22780' => 'ppa', 'Pp3c2_17490' => 'ppa', 'Pp3c2_23550' => 'ppa', 'Pp3c2_30910' => 'ppa', 'Pp3c2_33980' => 'ppa', 'Pp3c6_1880' => 'ppa', 'Pp3c7_22870' => 'ppa', 'Prupe.2G080100' => 'ppe', 'Prupe.2G080200' => 'ppe', 'Prupe.2G080500' => 'ppe', 'Prupe.2G080800' => 'ppe', 'Prupe.2G081000' => 'ppe', 'Prupe.7G114000' => 'ppe', 'Psat0s1572g0040' => 'psa', 'Psat0s3683g0040' => 'psa', 'Psat0s3683g0080' => 'psa', 'Psat3g034560' => 'psa', 'Psat3g053480' => 'psa', 'Psat6g081800' => 'psa', 'Psat6g081880' => 'psa', 'Psat6g177360' => 'psa', 'Psat6g177400' => 'psa', 'Psat6g177440' => 'psa', 'Psat6g177520' => 'psa', 'PSO339G1207' => 'pso', 'PSO339G1693' => 'pso', 'PSO339G3644' => 'pso', 'PSO384G1098' => 'pso', 'PSO384G2006' => 'pso', 'PSO384G2773' => 'pso', 'PSO384G2987' => 'pso', 'PSO425G0023' => 'pso', 'PSO425G0031' => 'pso', 'PSO425G0053' => 'pso', 'QL04p048518' => 'qlo', 'QL07p039494' => 'qlo', 'QL07p039507' => 'qlo', 'QL07p039525' => 'qlo', 'RcHm_v2.0_Chr1g0332821' => 'rch', 'RcHm_v2.0_Chr1g0332841' => 'rch', 'RcHm_v2.0_Chr3g0472731' => 'rch', 'RcHm_v2.0_Chr3g0472801' => 'rch', 'RcHm_v2.0_Chr3g0472831' => 'rch', 'Rhsim03G0077500' => 'rsi', 'Rhsim03G0077600' => 'rsi', 'Rhsim03G0077800' => 'rsi', 'Rhsim03G0077900' => 'rsi', 'Rhsim03G0079700' => 'rsi', 'Rhsim03G0101300' => 'rsi', 'Sabra10G0178500' => 'sbr', 'Sabra10G0183700' => 'sbr', 'Sabra10G0183900' => 'sbr', 'Sabra10G0184100' => 'sbr', 'Sabra10G0184300' => 'sbr', 'Sabra10G0184600' => 'sbr', 'Sabra10G0184700' => 'sbr', 'Sabra10G0184800' => 'sbr', 'Sabra10G0185100' => 'sbr', 'Sabra10G0185200' => 'sbr', 'Sabra10G0185300' => 'sbr', 'Sabra10G0185400' => 'sbr', 'Sabra10G0185500' => 'sbr', 'Sabra16G0267900' => 'sbr', 'Sabra16G0269800' => 'sbr', 'Sabra16G0270000' => 'sbr', 'Sabra16G0270100' => 'sbr', 'SalBow3G0308' => 'sbo', 'SalBow6G3537' => 'sbo', 'Sc02g0000990' => 'sci', 'Sc09g0005500' => 'sci', 'Sed0002253' => 'sed', 'Sed0005197' => 'sed', 'Sed0018050' => 'sed', 'Sed0018556' => 'sed', 'SEGI_10490' => 'sgi', 'SEGI_10505' => 'sgi', 'SEGI_11525' => 'sgi', 'SEGI_12869' => 'sgi', 'SEGI_15309' => 'sgi', 'SEGI_17967' => 'sgi', 'SEGI_18743' => 'sgi', 'SEGI_23111' => 'sgi', 'SEGI_23899' => 'sgi', 'SEGI_24400' => 'sgi', 'SEGI_25685' => 'sgi', 'SEGI_25938' => 'sgi', 'SEGI_27429' => 'sgi', 'SEGI_32829' => 'sgi', 'SEGI_36021' => 'sgi', 'SEGI_36818' => 'sgi', 'SEGI_39508' => 'sgi', 'SGA_v2.0_scaffold13G06760' => 'sas', 'SGA_v2.0_scaffold75G24763' => 'sas', 'SHI21297' => 'shi', 'Solyc11g007180.3' => 'sly', 'Sopen09g004460' => 'spe', 'Sopen11g003100' => 'spe', 'Sp2g03340' => 'spa', 'Sp2g07320' => 'spa', 'Sp3g08290' => 'spa', 'Sp4g18570' => 'spa', 'Sp6g39140' => 'spa', 'Sp6g39150' => 'spa', 'Sp6g39160' => 'spa', 'SpUn0101_0040' => 'spa', 'TAR633G0764' => 'tar', 'TAR636G3325' => 'tar', 'THA.LOC104826927' => 'tha', 'THA.LOC104827516' => 'tha', 'Thecc.05G085700' => 'tca', 'Thhalv10013924m.g' => 'esa', 'Thhalv10013966m.g' => 'esa', 'Thhalv10022090m.g' => 'esa', 'Thhalv10024112m.g' => 'esa', 'TPR.G11005' => 'tpr', 'TPR.G18682' => 'tpr', 'TPR.G18685' => 'tpr', 'TPR.G18701' => 'tpr', 'TPR.G18703' => 'tpr', 'TPR.G19524' => 'tpr', 'TPR.G32995' => 'tpr', 'TPR.G35427' => 'tpr', 'TWI15G0335' => 'twi', 'TWI38G1588' => 'twi', 'TWI38G1650' => 'twi', 'TWI38G2041' => 'twi', 'TWI53G1983' => 'twi', 'TWI63G0365' => 'twi', 'TWI63G1599' => 'twi', 'TWI74G0331' => 'twi', 'unitig_22.g5123' => 'ugi', 'unitig_22.g5124' => 'ugi', 'vmacro07391' => 'vma', 'vmacro07392' => 'vma', 'vmacro07393' => 'vma', 'vmacro23531' => 'vma', 'VMungo0720G0574' => 'vmu', 'VMungo0720G0666' => 'vmu', 'VMungo0720G1711' => 'vmu', 'VMungo1383G0419' => 'vmu', 'Zm00001eb121580' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001381', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001381' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001381', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '453', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001381' ) ), 'genes' => array( 'A03p20070' => 'bna', 'A05p39070' => 'bna', 'A09p19780' => 'bna', 'A09p19940' => 'bna', 'Aa31LG1G21610' => 'aar', 'Aa31LG3G2420' => 'aar', 'Aa31LG5G21480' => 'aar', 'Aa31LG5G21490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.317' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3467' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2468' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2469' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2154' => 'aag', 'AL2G26550' => 'aly', 'AL3G21210' => 'aly', 'AL4G32470' => 'aly', 'AL6G13100' => 'aly', 'AL6G13110' => 'aly', 'AL6G13120' => 'aly', 'Aqoxy4G02820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5BA12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JV9UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B65H15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TAJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2ULVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9ZRDB' => 'arhy', 'AT2G36325' => 'ath', 'AT3G09930' => 'ath', 'AT5G03590' => 'ath', 'AT5G03600' => 'ath', 'AT5G03610' => 'ath', 'ATR0820G228' => 'atr', 'Atru.chr12.994' => 'acertr', 'Atru.chr12.995' => 'acertr', 'Atru.chr12.996' => 'acertr', 'Atru.chr8.1577' => 'acertr', 'Atru.chr8.1580' => 'acertr', 'Atru.chr8.1582' => 'acertr', 'AUR62028565' => 'cqu', 'AUR62033521' => 'cqu', 'BcaB01g03846' => 'bca', 'BcaB01g05797' => 'bca', 'BcaB05g21823' => 'bca', 'BcaB05g21824' => 'bca', 'BcaB05g21827' => 'bca', 'BcaB05g22918' => 'bca', 'BcaB07g31056' => 'bca', 'BcaB07g31070' => 'bca', 'BcaB07g31071' => 'bca', 'BcaC01g05664' => 'bca', 'BcaC03g12994' => 'bca', 'BcaC03g12995' => 'bca', 'BcaC03g12996' => 'bca', 'BcaC03g13004' => 'bca', 'BcaC03g13005' => 'bca', 'BcaC04g21977' => 'bca', 'BcaC04g21992' => 'bca', 'BcaC05g29509' => 'bca', 'BolC3t12717H' => 'bol', 'BolC3t14747H' => 'bol', 'BolC5t34467H' => 'bol', 'BolC9t55403H' => 'bol', 'BolC9t55423H' => 'bol', 'BraA02t04769Z' => 'bra', 'BraA03t11257Z' => 'bra', 'BraA05t22699Z' => 'bra', 'BraA09t37583Z' => 'bra', 'BraA09t37602Z' => 'bra', 'BraA09t37603Z' => 'bra', 'C02p01170' => 'bna', 'C03p01650' => 'bna', 'C03p23510' => 'bna', 'C05p58090' => 'bna', 'C09p25080' => 'bna', 'C09p25100' => 'bna', 'C09p25250' => 'bna', 'CAN.G397.36' => 'can', 'CAN.G730.42' => 'can', 'CANSAT56G0146' => 'cansat', 'CANSAT56G2150' => 'cansat', 'CANSAT56G4316' => 'cansat', 'CANSAT80G0513' => 'cansat', 'CARHR084460' => 'chi', 'CARHR209690' => 'chi', 'CARHR209700' => 'chi', 'CARHR209730' => 'chi', 'Carub.0002s1426' => 'cru', 'Carub.0003s0904' => 'cru', 'Carub.0004s1810' => 'cru', 'Carub.0006s0243' => 'cru', 'Carub.0006s0244' => 'cru', 'Carub.0006s0245' => 'cru', 'Carub.0006s0249' => 'cru', 'Carub.0006s0251' => 'cru', 'Carub.0006s0252' => 'cru', 'Ca_08985_v3' => 'car', 'Ca_22053_v3' => 'car', 'CBR_g31448' => 'cbr', 'Cc00_g18870' => 'ccan', 'Cc06_g05550' => 'ccan', 'CDE06G0997' => 'cde', 'CDE06G2052' => 'cde', 'CDE08G0500' => 'cde', 'Cfa016577' => 'cfa', 'Cfa016578' => 'cfa', 'Cfa016581' => 'cfa', 'Ciclev10011959m.g' => 'ccl', 'Ciclev10033495m.g' => 'ccl', 'Ciclev10033618m.g' => 'ccl', 'CiPaw.09G011200' => 'cil', 'CiPaw.09G011300' => 'cil', 'CiPaw.09G011500' => 'cil', 'CiPaw.10G007600' => 'cil', 'CiPaw.10G007700' => 'cil', 'CiPaw.10G007800' => 'cil', 'CiPaw.10G007900' => 'cil', 'CiPaw.10G008000' => 'cil', 'ClCG04G009910' => 'cla', 'ClCG04G009920' => 'cla', 'ClCG04G009930' => 'cla', 'ClCG10G019120' => 'cla', 'COL.COLO4_29779' => 'col', 'COL.COLO4_38595' => 'col', 'Cpa.g.sc5.47' => 'cpa', 'CsaV3_3G037140' => 'csa', 'CsaV3_6G040560' => 'csa', 'CsaV3_6G040570' => 'csa', 'CsaV3_6G040580' => 'csa', 'CSS0005027' => 'camsi', 'CSS0012848' => 'camsi', 'CSS0041359' => 'camsi', 'DCAR_009152' => 'dca', 'Dinv14518' => 'din', 'Dinv17089' => 'din', 'Dinv20787' => 'din', 'Dinv21225' => 'din', 'Dinv31665' => 'din', 'Duzib093G1251' => 'dzi', 'Duzib106G1088' => 'dzi', 'Duzib128G1491' => 'dzi', 'EL10Ac7g16946' => 'bvu', 'Eucgr.A01521' => 'egr', 'Eucgr.G02700' => 'egr', 'Eucgr.K02058' => 'egr', 'Eucgr.K02059' => 'egr', 'FAN01G0469' => 'fan', 'FAN02G2318' => 'fan', 'FAN02G2533' => 'fan', 'FAN02G2846' => 'fan', 'FAN03G0810' => 'fan', 'FAN06G0876' => 'fan', 'FAN10G0210' => 'fan', 'FAN14G2127' => 'fan', 'FAN14G3804' => 'fan', 'FAN14G4188' => 'fan', 'FAN14G4710' => 'fan', 'FvH4_6g18290' => 'fve', 'FvH4_6g18330' => 'fve', 'FvH4_6g18350' => 'fve', 'FvH4_7g05761' => 'fve', 'FvH4_7g05772' => 'fve', 'Glyma.03G193600' => 'gma', 'Glyma.06G251900' => 'gma', 'Glyma.10G070500' => 'gma', 'Glyma.10G203350' => 'gma', 'Glyma.13G152950' => 'gma', 'Glyma.19G193500' => 'gma', 'Gohir.A01G207400' => 'ghi', 'Gohir.A04G064400' => 'ghi', 'Gohir.A09G171000' => 'ghi', 'Gohir.A12G091400' => 'ghi', 'Gohir.D01G196900' => 'ghi', 'Gohir.D04G101800' => 'ghi', 'Gohir.D09G166700' => 'ghi', 'Gohir.D12G091300' => 'ghi', 'Gorai.002G241000' => 'gra', 'Gorai.006G188500' => 'gra', 'Gorai.008G098800' => 'gra', 'Gorai.009G405200' => 'gra', 'GSVIVG01011220001' => 'vvi', 'GSVIVG01011222001' => 'vvi', 'GSVIVG01011232001' => 'vvi', 'GSVIVG01011239001' => 'vvi', 'GSVIVG01011247001' => 'vvi', 'GSVIVG01033808001' => 'vvi', 'HanXRQChr02g0051281' => 'han', 'HanXRQChr02g0051441' => 'han', 'HanXRQChr08g0217821' => 'han', 'HanXRQChr09g0255881' => 'han', 'HanXRQChr13g0401951' => 'han', 'Haze_19574' => 'cav', 'Haze_19575' => 'cav', 'Haze_19581' => 'cav', 'Hma1.2p1_0084F.1_g043520' => 'hma', 'Hma1.2p1_0246F.1_g101630' => 'hma', 'Hund03970' => 'sun', 'Hund06775' => 'sun', 'Lalb_Chr01g0018251' => 'lal', 'Lalb_Chr02g0151481' => 'lal', 'Lalb_Chr02g0151491' => 'lal', 'Lalb_Chr02g0151501' => 'lal', 'Lalb_Chr02g0151511' => 'lal', 'Lalb_Chr02g0151521' => 'lal', 'Lalb_Chr02g0151531' => 'lal', 'Lalb_Chr02g0151541' => 'lal', 'Lalb_Chr02g0151551' => 'lal', 'Lalb_Chr02g0151561' => 'lal', 'Lalb_Chr02g0151571' => 'lal', 'Lalb_Chr02g0151581' => 'lal', 'Lalb_Chr02g0151591' => 'lal', 'Lalb_Chr02g0151601' => 'lal', 'Lalb_Chr02g0151611' => 'lal', 'Lalb_Chr02g0151621' => 'lal', 'Lalb_Chr02g0151631' => 'lal', 'Lalb_Chr02g0151691' => 'lal', 'Lalb_Chr02g0155031' => 'lal', 'Lalb_Chr21g0313291' => 'lal', 'Lalb_Chr25g0288511' => 'lal', 'Lj1g0011779' => 'lja', 'Lj1g0021660' => 'lja', 'Lj2A134T53' => 'lonja', 'Lj2C30T14' => 'lonja', 'Lj3A999G44' => 'lonja', 'Lj5g0008591' => 'lja', 'Lj5g0012510' => 'lja', 'Lj5g0016287' => 'lja', 'Lj5g0017834' => 'lja', 'Lj5g0024260' => 'lja', 'Lj5g0028235' => 'lja', 'Lsat_1_v5_gn_6_24301' => 'lsa', 'Lsat_1_v5_gn_8_23801' => 'lsa', 'Manes.08G023700' => 'mes', 'Manes.09G057000' => 'mes', 'Manes.10G057800' => 'mes', 'Mapoly0009s0242' => 'mpo', 'Mapoly0016s0185' => 'mpo', 'Mapoly0053s0104' => 'mpo', 'MBI17_g16885_MAGBIO' => 'mbi', 'MBI17_g16886_MAGBIO' => 'mbi', 'MD02G1255500' => 'mdo', 'MD07G1066000' => 'mdo', 'MD12G1022800' => 'mdo', 'MD14G1019600' => 'mdo', 'Medtr1g060490' => 'mtr', 'Medtr1g060500' => 'mtr', 'Medtr1g060520' => 'mtr', 'Medtr1g060530' => 'mtr', 'Medtr1g092690' => 'mtr', 'Medtr1g092710' => 'mtr', 'Medtr1g092740' => 'mtr', 'Medtr1g092750' => 'mtr', 'Medtr1g092760' => 'mtr', 'Medtr7g104220' => 'mtr', 'MELO3C009459.2' => 'cme', 'MELO3C024531.2' => 'cme', 'MELO3C024532.2' => 'cme', 'MELO3C024533.2' => 'cme', 'MELO3C024534.2' => 'cme', 'Migut.J01060' => 'egut', 'Migut.J01061' => 'egut', 'Migut.J01062' => 'egut', 'Migut.J01063' => 'egut', 'Migut.J01064' => 'egut', 'MSTRG.19247' => 'ama', 'MSTRG.5826' => 'ama', 'MSTRG.9099' => 'ama', 'Nitab4.5_0000794g0060' => 'nta', 'Nitab4.5_0001437g0200' => 'nta', 'Nitab4.5_0002400g0050' => 'nta', 'Nitab4.5_0010239g0010' => 'nta', 'Nn2g14091' => 'nnu', 'Nn2g14093' => 'nnu', 'Nn2g14096' => 'nnu', 'Nn2g14097' => 'nnu', 'Nn2g14098' => 'nnu', 'Nn2g14100' => 'nnu', 'Nn2g14101' => 'nnu', 'Nn6g34968' => 'nnu', 'Nn6g34969' => 'nnu', 'Nn6g34970' => 'nnu', 'Nn6g34971' => 'nnu', 'Nn6g34974' => 'nnu', 'Oeu026189.1' => 'oeu', 'Oeu030895.1' => 'oeu', 'Oeu056912.1' => 'oeu', 'Os04g0650200' => 'osa', 'Os09g0567800' => 'osa', 'Peaxi162Scf00036g00217' => 'pax', 'Peaxi162Scf00173g00091' => 'pax', 'PGR004G0732' => 'pgr', 'PGR142G0098' => 'pgr', 'PGR142G1676' => 'pgr', 'PGR142G2526' => 'pgr', 'PGR142G3811' => 'pgr', 'PGR142G4029' => 'pgr', 'PGSC0003DMG400008961' => 'stu', 'PGSC0003DMG400019470' => 'stu', 'Phvul.001G188600' => 'pvu', 'Phvul.007G103600' => 'pvu', 'Phvul.007G103700' => 'pvu', 'Phvul.007G228600' => 'pvu', 'Potri.001G406500' => 'ptr', 'Potri.005G053100' => 'ptr', 'Potri.010G230100' => 'ptr', 'Potri.010G236800' => 'ptr', 'Potri.010G236951' => 'ptr', 'Potri.010G237000' => 'ptr', 'Pp3c10_5750' => 'ppa', 'Pp3c11_12330' => 'ppa', 'Pp3c14_4080' => 'ppa', 'Pp3c1_16800' => 'ppa', 'Pp3c1_2040' => 'ppa', 'Pp3c1_22780' => 'ppa', 'Pp3c2_17490' => 'ppa', 'Pp3c2_23550' => 'ppa', 'Pp3c2_30910' => 'ppa', 'Pp3c2_33980' => 'ppa', 'Pp3c6_1880' => 'ppa', 'Pp3c7_22870' => 'ppa', 'Prupe.2G080100' => 'ppe', 'Prupe.2G080200' => 'ppe', 'Prupe.2G080500' => 'ppe', 'Prupe.2G080800' => 'ppe', 'Prupe.2G081000' => 'ppe', 'Prupe.7G114000' => 'ppe', 'Psat0s1572g0040' => 'psa', 'Psat0s3683g0040' => 'psa', 'Psat0s3683g0080' => 'psa', 'Psat3g034560' => 'psa', 'Psat3g053480' => 'psa', 'Psat6g081800' => 'psa', 'Psat6g081880' => 'psa', 'Psat6g177360' => 'psa', 'Psat6g177400' => 'psa', 'Psat6g177440' => 'psa', 'Psat6g177520' => 'psa', 'PSO339G1207' => 'pso', 'PSO339G1693' => 'pso', 'PSO339G3644' => 'pso', 'PSO384G1098' => 'pso', 'PSO384G2006' => 'pso', 'PSO384G2773' => 'pso', 'PSO384G2987' => 'pso', 'PSO425G0023' => 'pso', 'PSO425G0031' => 'pso', 'PSO425G0053' => 'pso', 'QL04p048518' => 'qlo', 'QL07p039494' => 'qlo', 'QL07p039507' => 'qlo', 'QL07p039525' => 'qlo', 'RcHm_v2.0_Chr1g0332821' => 'rch', 'RcHm_v2.0_Chr1g0332841' => 'rch', 'RcHm_v2.0_Chr3g0472731' => 'rch', 'RcHm_v2.0_Chr3g0472801' => 'rch', 'RcHm_v2.0_Chr3g0472831' => 'rch', 'Rhsim03G0077500' => 'rsi', 'Rhsim03G0077600' => 'rsi', 'Rhsim03G0077800' => 'rsi', 'Rhsim03G0077900' => 'rsi', 'Rhsim03G0079700' => 'rsi', 'Rhsim03G0101300' => 'rsi', 'Sabra10G0178500' => 'sbr', 'Sabra10G0183700' => 'sbr', 'Sabra10G0183900' => 'sbr', 'Sabra10G0184100' => 'sbr', 'Sabra10G0184300' => 'sbr', 'Sabra10G0184600' => 'sbr', 'Sabra10G0184700' => 'sbr', 'Sabra10G0184800' => 'sbr', 'Sabra10G0185100' => 'sbr', 'Sabra10G0185200' => 'sbr', 'Sabra10G0185300' => 'sbr', 'Sabra10G0185400' => 'sbr', 'Sabra10G0185500' => 'sbr', 'Sabra16G0267900' => 'sbr', 'Sabra16G0269800' => 'sbr', 'Sabra16G0270000' => 'sbr', 'Sabra16G0270100' => 'sbr', 'SalBow3G0308' => 'sbo', 'SalBow6G3537' => 'sbo', 'Sc02g0000990' => 'sci', 'Sc09g0005500' => 'sci', 'Sed0002253' => 'sed', 'Sed0005197' => 'sed', 'Sed0018050' => 'sed', 'Sed0018556' => 'sed', 'SEGI_10490' => 'sgi', 'SEGI_10505' => 'sgi', 'SEGI_11525' => 'sgi', 'SEGI_12869' => 'sgi', 'SEGI_15309' => 'sgi', 'SEGI_17967' => 'sgi', 'SEGI_18743' => 'sgi', 'SEGI_23111' => 'sgi', 'SEGI_23899' => 'sgi', 'SEGI_24400' => 'sgi', 'SEGI_25685' => 'sgi', 'SEGI_25938' => 'sgi', 'SEGI_27429' => 'sgi', 'SEGI_32829' => 'sgi', 'SEGI_36021' => 'sgi', 'SEGI_36818' => 'sgi', 'SEGI_39508' => 'sgi', 'SGA_v2.0_scaffold13G06760' => 'sas', 'SGA_v2.0_scaffold75G24763' => 'sas', 'SHI21297' => 'shi', 'Solyc11g007180.3' => 'sly', 'Sopen09g004460' => 'spe', 'Sopen11g003100' => 'spe', 'Sp2g03340' => 'spa', 'Sp2g07320' => 'spa', 'Sp3g08290' => 'spa', 'Sp4g18570' => 'spa', 'Sp6g39140' => 'spa', 'Sp6g39150' => 'spa', 'Sp6g39160' => 'spa', 'SpUn0101_0040' => 'spa', 'TAR633G0764' => 'tar', 'TAR636G3325' => 'tar', 'THA.LOC104826927' => 'tha', 'THA.LOC104827516' => 'tha', 'Thecc.05G085700' => 'tca', 'Thhalv10013924m.g' => 'esa', 'Thhalv10013966m.g' => 'esa', 'Thhalv10022090m.g' => 'esa', 'Thhalv10024112m.g' => 'esa', 'TPR.G11005' => 'tpr', 'TPR.G18682' => 'tpr', 'TPR.G18685' => 'tpr', 'TPR.G18701' => 'tpr', 'TPR.G18703' => 'tpr', 'TPR.G19524' => 'tpr', 'TPR.G32995' => 'tpr', 'TPR.G35427' => 'tpr', 'TWI15G0335' => 'twi', 'TWI38G1588' => 'twi', 'TWI38G1650' => 'twi', 'TWI38G2041' => 'twi', 'TWI53G1983' => 'twi', 'TWI63G0365' => 'twi', 'TWI63G1599' => 'twi', 'TWI74G0331' => 'twi', 'unitig_22.g5123' => 'ugi', 'unitig_22.g5124' => 'ugi', 'vmacro07391' => 'vma', 'vmacro07392' => 'vma', 'vmacro07393' => 'vma', 'vmacro23531' => 'vma', 'VMungo0720G0574' => 'vmu', 'VMungo0720G0666' => 'vmu', 'VMungo0720G1711' => 'vmu', 'VMungo1383G0419' => 'vmu', 'Zm00001eb121580' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001381' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001381' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001381' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001381' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001381', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '453', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p20070' => 'bna', 'A05p39070' => 'bna', 'A09p19780' => 'bna', 'A09p19940' => 'bna', 'Aa31LG1G21610' => 'aar', 'Aa31LG3G2420' => 'aar', 'Aa31LG5G21480' => 'aar', 'Aa31LG5G21490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.317' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3467' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2468' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2469' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2154' => 'aag', 'AL2G26550' => 'aly', 'AL3G21210' => 'aly', 'AL4G32470' => 'aly', 'AL6G13100' => 'aly', 'AL6G13110' => 'aly', 'AL6G13120' => 'aly', 'Aqoxy4G02820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5BA12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JV9UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B65H15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TAJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2ULVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9ZRDB' => 'arhy', 'AT2G36325' => 'ath', 'AT3G09930' => 'ath', 'AT5G03590' => 'ath', 'AT5G03600' => 'ath', 'AT5G03610' => 'ath', 'ATR0820G228' => 'atr', 'Atru.chr12.994' => 'acertr', 'Atru.chr12.995' => 'acertr', 'Atru.chr12.996' => 'acertr', 'Atru.chr8.1577' => 'acertr', 'Atru.chr8.1580' => 'acertr', 'Atru.chr8.1582' => 'acertr', 'AUR62028565' => 'cqu', 'AUR62033521' => 'cqu', 'BcaB01g03846' => 'bca', 'BcaB01g05797' => 'bca', 'BcaB05g21823' => 'bca', 'BcaB05g21824' => 'bca', 'BcaB05g21827' => 'bca', 'BcaB05g22918' => 'bca', 'BcaB07g31056' => 'bca', 'BcaB07g31070' => 'bca', 'BcaB07g31071' => 'bca', 'BcaC01g05664' => 'bca', 'BcaC03g12994' => 'bca', 'BcaC03g12995' => 'bca', 'BcaC03g12996' => 'bca', 'BcaC03g13004' => 'bca', 'BcaC03g13005' => 'bca', 'BcaC04g21977' => 'bca', 'BcaC04g21992' => 'bca', 'BcaC05g29509' => 'bca', 'BolC3t12717H' => 'bol', 'BolC3t14747H' => 'bol', 'BolC5t34467H' => 'bol', 'BolC9t55403H' => 'bol', 'BolC9t55423H' => 'bol', 'BraA02t04769Z' => 'bra', 'BraA03t11257Z' => 'bra', 'BraA05t22699Z' => 'bra', 'BraA09t37583Z' => 'bra', 'BraA09t37602Z' => 'bra', 'BraA09t37603Z' => 'bra', 'C02p01170' => 'bna', 'C03p01650' => 'bna', 'C03p23510' => 'bna', 'C05p58090' => 'bna', 'C09p25080' => 'bna', 'C09p25100' => 'bna', 'C09p25250' => 'bna', 'CAN.G397.36' => 'can', 'CAN.G730.42' => 'can', 'CANSAT56G0146' => 'cansat', 'CANSAT56G2150' => 'cansat', 'CANSAT56G4316' => 'cansat', 'CANSAT80G0513' => 'cansat', 'CARHR084460' => 'chi', 'CARHR209690' => 'chi', 'CARHR209700' => 'chi', 'CARHR209730' => 'chi', 'Carub.0002s1426' => 'cru', 'Carub.0003s0904' => 'cru', 'Carub.0004s1810' => 'cru', 'Carub.0006s0243' => 'cru', 'Carub.0006s0244' => 'cru', 'Carub.0006s0245' => 'cru', 'Carub.0006s0249' => 'cru', 'Carub.0006s0251' => 'cru', 'Carub.0006s0252' => 'cru', 'Ca_08985_v3' => 'car', 'Ca_22053_v3' => 'car', 'CBR_g31448' => 'cbr', 'Cc00_g18870' => 'ccan', 'Cc06_g05550' => 'ccan', 'CDE06G0997' => 'cde', 'CDE06G2052' => 'cde', 'CDE08G0500' => 'cde', 'Cfa016577' => 'cfa', 'Cfa016578' => 'cfa', 'Cfa016581' => 'cfa', 'Ciclev10011959m.g' => 'ccl', 'Ciclev10033495m.g' => 'ccl', 'Ciclev10033618m.g' => 'ccl', 'CiPaw.09G011200' => 'cil', 'CiPaw.09G011300' => 'cil', 'CiPaw.09G011500' => 'cil', 'CiPaw.10G007600' => 'cil', 'CiPaw.10G007700' => 'cil', 'CiPaw.10G007800' => 'cil', 'CiPaw.10G007900' => 'cil', 'CiPaw.10G008000' => 'cil', 'ClCG04G009910' => 'cla', 'ClCG04G009920' => 'cla', 'ClCG04G009930' => 'cla', 'ClCG10G019120' => 'cla', 'COL.COLO4_29779' => 'col', 'COL.COLO4_38595' => 'col', 'Cpa.g.sc5.47' => 'cpa', 'CsaV3_3G037140' => 'csa', 'CsaV3_6G040560' => 'csa', 'CsaV3_6G040570' => 'csa', 'CsaV3_6G040580' => 'csa', 'CSS0005027' => 'camsi', 'CSS0012848' => 'camsi', 'CSS0041359' => 'camsi', 'DCAR_009152' => 'dca', 'Dinv14518' => 'din', 'Dinv17089' => 'din', 'Dinv20787' => 'din', 'Dinv21225' => 'din', 'Dinv31665' => 'din', 'Duzib093G1251' => 'dzi', 'Duzib106G1088' => 'dzi', 'Duzib128G1491' => 'dzi', 'EL10Ac7g16946' => 'bvu', 'Eucgr.A01521' => 'egr', 'Eucgr.G02700' => 'egr', 'Eucgr.K02058' => 'egr', 'Eucgr.K02059' => 'egr', 'FAN01G0469' => 'fan', 'FAN02G2318' => 'fan', 'FAN02G2533' => 'fan', 'FAN02G2846' => 'fan', 'FAN03G0810' => 'fan', 'FAN06G0876' => 'fan', 'FAN10G0210' => 'fan', 'FAN14G2127' => 'fan', 'FAN14G3804' => 'fan', 'FAN14G4188' => 'fan', 'FAN14G4710' => 'fan', 'FvH4_6g18290' => 'fve', 'FvH4_6g18330' => 'fve', 'FvH4_6g18350' => 'fve', 'FvH4_7g05761' => 'fve', 'FvH4_7g05772' => 'fve', 'Glyma.03G193600' => 'gma', 'Glyma.06G251900' => 'gma', 'Glyma.10G070500' => 'gma', 'Glyma.10G203350' => 'gma', 'Glyma.13G152950' => 'gma', 'Glyma.19G193500' => 'gma', 'Gohir.A01G207400' => 'ghi', 'Gohir.A04G064400' => 'ghi', 'Gohir.A09G171000' => 'ghi', 'Gohir.A12G091400' => 'ghi', 'Gohir.D01G196900' => 'ghi', 'Gohir.D04G101800' => 'ghi', 'Gohir.D09G166700' => 'ghi', 'Gohir.D12G091300' => 'ghi', 'Gorai.002G241000' => 'gra', 'Gorai.006G188500' => 'gra', 'Gorai.008G098800' => 'gra', 'Gorai.009G405200' => 'gra', 'GSVIVG01011220001' => 'vvi', 'GSVIVG01011222001' => 'vvi', 'GSVIVG01011232001' => 'vvi', 'GSVIVG01011239001' => 'vvi', 'GSVIVG01011247001' => 'vvi', 'GSVIVG01033808001' => 'vvi', 'HanXRQChr02g0051281' => 'han', 'HanXRQChr02g0051441' => 'han', 'HanXRQChr08g0217821' => 'han', 'HanXRQChr09g0255881' => 'han', 'HanXRQChr13g0401951' => 'han', 'Haze_19574' => 'cav', 'Haze_19575' => 'cav', 'Haze_19581' => 'cav', 'Hma1.2p1_0084F.1_g043520' => 'hma', 'Hma1.2p1_0246F.1_g101630' => 'hma', 'Hund03970' => 'sun', 'Hund06775' => 'sun', 'Lalb_Chr01g0018251' => 'lal', 'Lalb_Chr02g0151481' => 'lal', 'Lalb_Chr02g0151491' => 'lal', 'Lalb_Chr02g0151501' => 'lal', 'Lalb_Chr02g0151511' => 'lal', 'Lalb_Chr02g0151521' => 'lal', 'Lalb_Chr02g0151531' => 'lal', 'Lalb_Chr02g0151541' => 'lal', 'Lalb_Chr02g0151551' => 'lal', 'Lalb_Chr02g0151561' => 'lal', 'Lalb_Chr02g0151571' => 'lal', 'Lalb_Chr02g0151581' => 'lal', 'Lalb_Chr02g0151591' => 'lal', 'Lalb_Chr02g0151601' => 'lal', 'Lalb_Chr02g0151611' => 'lal', 'Lalb_Chr02g0151621' => 'lal', 'Lalb_Chr02g0151631' => 'lal', 'Lalb_Chr02g0151691' => 'lal', 'Lalb_Chr02g0155031' => 'lal', 'Lalb_Chr21g0313291' => 'lal', 'Lalb_Chr25g0288511' => 'lal', 'Lj1g0011779' => 'lja', 'Lj1g0021660' => 'lja', 'Lj2A134T53' => 'lonja', 'Lj2C30T14' => 'lonja', 'Lj3A999G44' => 'lonja', 'Lj5g0008591' => 'lja', 'Lj5g0012510' => 'lja', 'Lj5g0016287' => 'lja', 'Lj5g0017834' => 'lja', 'Lj5g0024260' => 'lja', 'Lj5g0028235' => 'lja', 'Lsat_1_v5_gn_6_24301' => 'lsa', 'Lsat_1_v5_gn_8_23801' => 'lsa', 'Manes.08G023700' => 'mes', 'Manes.09G057000' => 'mes', 'Manes.10G057800' => 'mes', 'Mapoly0009s0242' => 'mpo', 'Mapoly0016s0185' => 'mpo', 'Mapoly0053s0104' => 'mpo', 'MBI17_g16885_MAGBIO' => 'mbi', 'MBI17_g16886_MAGBIO' => 'mbi', 'MD02G1255500' => 'mdo', 'MD07G1066000' => 'mdo', 'MD12G1022800' => 'mdo', 'MD14G1019600' => 'mdo', 'Medtr1g060490' => 'mtr', 'Medtr1g060500' => 'mtr', 'Medtr1g060520' => 'mtr', 'Medtr1g060530' => 'mtr', 'Medtr1g092690' => 'mtr', 'Medtr1g092710' => 'mtr', 'Medtr1g092740' => 'mtr', 'Medtr1g092750' => 'mtr', 'Medtr1g092760' => 'mtr', 'Medtr7g104220' => 'mtr', 'MELO3C009459.2' => 'cme', 'MELO3C024531.2' => 'cme', 'MELO3C024532.2' => 'cme', 'MELO3C024533.2' => 'cme', 'MELO3C024534.2' => 'cme', 'Migut.J01060' => 'egut', 'Migut.J01061' => 'egut', 'Migut.J01062' => 'egut', 'Migut.J01063' => 'egut', 'Migut.J01064' => 'egut', 'MSTRG.19247' => 'ama', 'MSTRG.5826' => 'ama', 'MSTRG.9099' => 'ama', 'Nitab4.5_0000794g0060' => 'nta', 'Nitab4.5_0001437g0200' => 'nta', 'Nitab4.5_0002400g0050' => 'nta', 'Nitab4.5_0010239g0010' => 'nta', 'Nn2g14091' => 'nnu', 'Nn2g14093' => 'nnu', 'Nn2g14096' => 'nnu', 'Nn2g14097' => 'nnu', 'Nn2g14098' => 'nnu', 'Nn2g14100' => 'nnu', 'Nn2g14101' => 'nnu', 'Nn6g34968' => 'nnu', 'Nn6g34969' => 'nnu', 'Nn6g34970' => 'nnu', 'Nn6g34971' => 'nnu', 'Nn6g34974' => 'nnu', 'Oeu026189.1' => 'oeu', 'Oeu030895.1' => 'oeu', 'Oeu056912.1' => 'oeu', 'Os04g0650200' => 'osa', 'Os09g0567800' => 'osa', 'Peaxi162Scf00036g00217' => 'pax', 'Peaxi162Scf00173g00091' => 'pax', 'PGR004G0732' => 'pgr', 'PGR142G0098' => 'pgr', 'PGR142G1676' => 'pgr', 'PGR142G2526' => 'pgr', 'PGR142G3811' => 'pgr', 'PGR142G4029' => 'pgr', 'PGSC0003DMG400008961' => 'stu', 'PGSC0003DMG400019470' => 'stu', 'Phvul.001G188600' => 'pvu', 'Phvul.007G103600' => 'pvu', 'Phvul.007G103700' => 'pvu', 'Phvul.007G228600' => 'pvu', 'Potri.001G406500' => 'ptr', 'Potri.005G053100' => 'ptr', 'Potri.010G230100' => 'ptr', 'Potri.010G236800' => 'ptr', 'Potri.010G236951' => 'ptr', 'Potri.010G237000' => 'ptr', 'Pp3c10_5750' => 'ppa', 'Pp3c11_12330' => 'ppa', 'Pp3c14_4080' => 'ppa', 'Pp3c1_16800' => 'ppa', 'Pp3c1_2040' => 'ppa', 'Pp3c1_22780' => 'ppa', 'Pp3c2_17490' => 'ppa', 'Pp3c2_23550' => 'ppa', 'Pp3c2_30910' => 'ppa', 'Pp3c2_33980' => 'ppa', 'Pp3c6_1880' => 'ppa', 'Pp3c7_22870' => 'ppa', 'Prupe.2G080100' => 'ppe', 'Prupe.2G080200' => 'ppe', 'Prupe.2G080500' => 'ppe', 'Prupe.2G080800' => 'ppe', 'Prupe.2G081000' => 'ppe', 'Prupe.7G114000' => 'ppe', 'Psat0s1572g0040' => 'psa', 'Psat0s3683g0040' => 'psa', 'Psat0s3683g0080' => 'psa', 'Psat3g034560' => 'psa', 'Psat3g053480' => 'psa', 'Psat6g081800' => 'psa', 'Psat6g081880' => 'psa', 'Psat6g177360' => 'psa', 'Psat6g177400' => 'psa', 'Psat6g177440' => 'psa', 'Psat6g177520' => 'psa', 'PSO339G1207' => 'pso', 'PSO339G1693' => 'pso', 'PSO339G3644' => 'pso', 'PSO384G1098' => 'pso', 'PSO384G2006' => 'pso', 'PSO384G2773' => 'pso', 'PSO384G2987' => 'pso', 'PSO425G0023' => 'pso', 'PSO425G0031' => 'pso', 'PSO425G0053' => 'pso', 'QL04p048518' => 'qlo', 'QL07p039494' => 'qlo', 'QL07p039507' => 'qlo', 'QL07p039525' => 'qlo', 'RcHm_v2.0_Chr1g0332821' => 'rch', 'RcHm_v2.0_Chr1g0332841' => 'rch', 'RcHm_v2.0_Chr3g0472731' => 'rch', 'RcHm_v2.0_Chr3g0472801' => 'rch', 'RcHm_v2.0_Chr3g0472831' => 'rch', 'Rhsim03G0077500' => 'rsi', 'Rhsim03G0077600' => 'rsi', 'Rhsim03G0077800' => 'rsi', 'Rhsim03G0077900' => 'rsi', 'Rhsim03G0079700' => 'rsi', 'Rhsim03G0101300' => 'rsi', 'Sabra10G0178500' => 'sbr', 'Sabra10G0183700' => 'sbr', 'Sabra10G0183900' => 'sbr', 'Sabra10G0184100' => 'sbr', 'Sabra10G0184300' => 'sbr', 'Sabra10G0184600' => 'sbr', 'Sabra10G0184700' => 'sbr', 'Sabra10G0184800' => 'sbr', 'Sabra10G0185100' => 'sbr', 'Sabra10G0185200' => 'sbr', 'Sabra10G0185300' => 'sbr', 'Sabra10G0185400' => 'sbr', 'Sabra10G0185500' => 'sbr', 'Sabra16G0267900' => 'sbr', 'Sabra16G0269800' => 'sbr', 'Sabra16G0270000' => 'sbr', 'Sabra16G0270100' => 'sbr', 'SalBow3G0308' => 'sbo', 'SalBow6G3537' => 'sbo', 'Sc02g0000990' => 'sci', 'Sc09g0005500' => 'sci', 'Sed0002253' => 'sed', 'Sed0005197' => 'sed', 'Sed0018050' => 'sed', 'Sed0018556' => 'sed', 'SEGI_10490' => 'sgi', 'SEGI_10505' => 'sgi', 'SEGI_11525' => 'sgi', 'SEGI_12869' => 'sgi', 'SEGI_15309' => 'sgi', 'SEGI_17967' => 'sgi', 'SEGI_18743' => 'sgi', 'SEGI_23111' => 'sgi', 'SEGI_23899' => 'sgi', 'SEGI_24400' => 'sgi', 'SEGI_25685' => 'sgi', 'SEGI_25938' => 'sgi', 'SEGI_27429' => 'sgi', 'SEGI_32829' => 'sgi', 'SEGI_36021' => 'sgi', 'SEGI_36818' => 'sgi', 'SEGI_39508' => 'sgi', 'SGA_v2.0_scaffold13G06760' => 'sas', 'SGA_v2.0_scaffold75G24763' => 'sas', 'SHI21297' => 'shi', 'Solyc11g007180.3' => 'sly', 'Sopen09g004460' => 'spe', 'Sopen11g003100' => 'spe', 'Sp2g03340' => 'spa', 'Sp2g07320' => 'spa', 'Sp3g08290' => 'spa', 'Sp4g18570' => 'spa', 'Sp6g39140' => 'spa', 'Sp6g39150' => 'spa', 'Sp6g39160' => 'spa', 'SpUn0101_0040' => 'spa', 'TAR633G0764' => 'tar', 'TAR636G3325' => 'tar', 'THA.LOC104826927' => 'tha', 'THA.LOC104827516' => 'tha', 'Thecc.05G085700' => 'tca', 'Thhalv10013924m.g' => 'esa', 'Thhalv10013966m.g' => 'esa', 'Thhalv10022090m.g' => 'esa', 'Thhalv10024112m.g' => 'esa', 'TPR.G11005' => 'tpr', 'TPR.G18682' => 'tpr', 'TPR.G18685' => 'tpr', 'TPR.G18701' => 'tpr', 'TPR.G18703' => 'tpr', 'TPR.G19524' => 'tpr', 'TPR.G32995' => 'tpr', 'TPR.G35427' => 'tpr', 'TWI15G0335' => 'twi', 'TWI38G1588' => 'twi', 'TWI38G1650' => 'twi', 'TWI38G2041' => 'twi', 'TWI53G1983' => 'twi', 'TWI63G0365' => 'twi', 'TWI63G1599' => 'twi', 'TWI74G0331' => 'twi', 'unitig_22.g5123' => 'ugi', 'unitig_22.g5124' => 'ugi', 'vmacro07391' => 'vma', 'vmacro07392' => 'vma', 'vmacro07393' => 'vma', 'vmacro23531' => 'vma', 'VMungo0720G0574' => 'vmu', 'VMungo0720G0666' => 'vmu', 'VMungo0720G1711' => 'vmu', 'VMungo1383G0419' => 'vmu', 'Zm00001eb121580' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001381', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001381' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001381', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '453', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001381' ) ), 'genes' => array( 'A03p20070' => 'bna', 'A05p39070' => 'bna', 'A09p19780' => 'bna', 'A09p19940' => 'bna', 'Aa31LG1G21610' => 'aar', 'Aa31LG3G2420' => 'aar', 'Aa31LG5G21480' => 'aar', 'Aa31LG5G21490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.317' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3467' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2468' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2469' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2154' => 'aag', 'AL2G26550' => 'aly', 'AL3G21210' => 'aly', 'AL4G32470' => 'aly', 'AL6G13100' => 'aly', 'AL6G13110' => 'aly', 'AL6G13120' => 'aly', 'Aqoxy4G02820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5BA12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JV9UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B65H15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TAJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2ULVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9ZRDB' => 'arhy', 'AT2G36325' => 'ath', 'AT3G09930' => 'ath', 'AT5G03590' => 'ath', 'AT5G03600' => 'ath', 'AT5G03610' => 'ath', 'ATR0820G228' => 'atr', 'Atru.chr12.994' => 'acertr', 'Atru.chr12.995' => 'acertr', 'Atru.chr12.996' => 'acertr', 'Atru.chr8.1577' => 'acertr', 'Atru.chr8.1580' => 'acertr', 'Atru.chr8.1582' => 'acertr', 'AUR62028565' => 'cqu', 'AUR62033521' => 'cqu', 'BcaB01g03846' => 'bca', 'BcaB01g05797' => 'bca', 'BcaB05g21823' => 'bca', 'BcaB05g21824' => 'bca', 'BcaB05g21827' => 'bca', 'BcaB05g22918' => 'bca', 'BcaB07g31056' => 'bca', 'BcaB07g31070' => 'bca', 'BcaB07g31071' => 'bca', 'BcaC01g05664' => 'bca', 'BcaC03g12994' => 'bca', 'BcaC03g12995' => 'bca', 'BcaC03g12996' => 'bca', 'BcaC03g13004' => 'bca', 'BcaC03g13005' => 'bca', 'BcaC04g21977' => 'bca', 'BcaC04g21992' => 'bca', 'BcaC05g29509' => 'bca', 'BolC3t12717H' => 'bol', 'BolC3t14747H' => 'bol', 'BolC5t34467H' => 'bol', 'BolC9t55403H' => 'bol', 'BolC9t55423H' => 'bol', 'BraA02t04769Z' => 'bra', 'BraA03t11257Z' => 'bra', 'BraA05t22699Z' => 'bra', 'BraA09t37583Z' => 'bra', 'BraA09t37602Z' => 'bra', 'BraA09t37603Z' => 'bra', 'C02p01170' => 'bna', 'C03p01650' => 'bna', 'C03p23510' => 'bna', 'C05p58090' => 'bna', 'C09p25080' => 'bna', 'C09p25100' => 'bna', 'C09p25250' => 'bna', 'CAN.G397.36' => 'can', 'CAN.G730.42' => 'can', 'CANSAT56G0146' => 'cansat', 'CANSAT56G2150' => 'cansat', 'CANSAT56G4316' => 'cansat', 'CANSAT80G0513' => 'cansat', 'CARHR084460' => 'chi', 'CARHR209690' => 'chi', 'CARHR209700' => 'chi', 'CARHR209730' => 'chi', 'Carub.0002s1426' => 'cru', 'Carub.0003s0904' => 'cru', 'Carub.0004s1810' => 'cru', 'Carub.0006s0243' => 'cru', 'Carub.0006s0244' => 'cru', 'Carub.0006s0245' => 'cru', 'Carub.0006s0249' => 'cru', 'Carub.0006s0251' => 'cru', 'Carub.0006s0252' => 'cru', 'Ca_08985_v3' => 'car', 'Ca_22053_v3' => 'car', 'CBR_g31448' => 'cbr', 'Cc00_g18870' => 'ccan', 'Cc06_g05550' => 'ccan', 'CDE06G0997' => 'cde', 'CDE06G2052' => 'cde', 'CDE08G0500' => 'cde', 'Cfa016577' => 'cfa', 'Cfa016578' => 'cfa', 'Cfa016581' => 'cfa', 'Ciclev10011959m.g' => 'ccl', 'Ciclev10033495m.g' => 'ccl', 'Ciclev10033618m.g' => 'ccl', 'CiPaw.09G011200' => 'cil', 'CiPaw.09G011300' => 'cil', 'CiPaw.09G011500' => 'cil', 'CiPaw.10G007600' => 'cil', 'CiPaw.10G007700' => 'cil', 'CiPaw.10G007800' => 'cil', 'CiPaw.10G007900' => 'cil', 'CiPaw.10G008000' => 'cil', 'ClCG04G009910' => 'cla', 'ClCG04G009920' => 'cla', 'ClCG04G009930' => 'cla', 'ClCG10G019120' => 'cla', 'COL.COLO4_29779' => 'col', 'COL.COLO4_38595' => 'col', 'Cpa.g.sc5.47' => 'cpa', 'CsaV3_3G037140' => 'csa', 'CsaV3_6G040560' => 'csa', 'CsaV3_6G040570' => 'csa', 'CsaV3_6G040580' => 'csa', 'CSS0005027' => 'camsi', 'CSS0012848' => 'camsi', 'CSS0041359' => 'camsi', 'DCAR_009152' => 'dca', 'Dinv14518' => 'din', 'Dinv17089' => 'din', 'Dinv20787' => 'din', 'Dinv21225' => 'din', 'Dinv31665' => 'din', 'Duzib093G1251' => 'dzi', 'Duzib106G1088' => 'dzi', 'Duzib128G1491' => 'dzi', 'EL10Ac7g16946' => 'bvu', 'Eucgr.A01521' => 'egr', 'Eucgr.G02700' => 'egr', 'Eucgr.K02058' => 'egr', 'Eucgr.K02059' => 'egr', 'FAN01G0469' => 'fan', 'FAN02G2318' => 'fan', 'FAN02G2533' => 'fan', 'FAN02G2846' => 'fan', 'FAN03G0810' => 'fan', 'FAN06G0876' => 'fan', 'FAN10G0210' => 'fan', 'FAN14G2127' => 'fan', 'FAN14G3804' => 'fan', 'FAN14G4188' => 'fan', 'FAN14G4710' => 'fan', 'FvH4_6g18290' => 'fve', 'FvH4_6g18330' => 'fve', 'FvH4_6g18350' => 'fve', 'FvH4_7g05761' => 'fve', 'FvH4_7g05772' => 'fve', 'Glyma.03G193600' => 'gma', 'Glyma.06G251900' => 'gma', 'Glyma.10G070500' => 'gma', 'Glyma.10G203350' => 'gma', 'Glyma.13G152950' => 'gma', 'Glyma.19G193500' => 'gma', 'Gohir.A01G207400' => 'ghi', 'Gohir.A04G064400' => 'ghi', 'Gohir.A09G171000' => 'ghi', 'Gohir.A12G091400' => 'ghi', 'Gohir.D01G196900' => 'ghi', 'Gohir.D04G101800' => 'ghi', 'Gohir.D09G166700' => 'ghi', 'Gohir.D12G091300' => 'ghi', 'Gorai.002G241000' => 'gra', 'Gorai.006G188500' => 'gra', 'Gorai.008G098800' => 'gra', 'Gorai.009G405200' => 'gra', 'GSVIVG01011220001' => 'vvi', 'GSVIVG01011222001' => 'vvi', 'GSVIVG01011232001' => 'vvi', 'GSVIVG01011239001' => 'vvi', 'GSVIVG01011247001' => 'vvi', 'GSVIVG01033808001' => 'vvi', 'HanXRQChr02g0051281' => 'han', 'HanXRQChr02g0051441' => 'han', 'HanXRQChr08g0217821' => 'han', 'HanXRQChr09g0255881' => 'han', 'HanXRQChr13g0401951' => 'han', 'Haze_19574' => 'cav', 'Haze_19575' => 'cav', 'Haze_19581' => 'cav', 'Hma1.2p1_0084F.1_g043520' => 'hma', 'Hma1.2p1_0246F.1_g101630' => 'hma', 'Hund03970' => 'sun', 'Hund06775' => 'sun', 'Lalb_Chr01g0018251' => 'lal', 'Lalb_Chr02g0151481' => 'lal', 'Lalb_Chr02g0151491' => 'lal', 'Lalb_Chr02g0151501' => 'lal', 'Lalb_Chr02g0151511' => 'lal', 'Lalb_Chr02g0151521' => 'lal', 'Lalb_Chr02g0151531' => 'lal', 'Lalb_Chr02g0151541' => 'lal', 'Lalb_Chr02g0151551' => 'lal', 'Lalb_Chr02g0151561' => 'lal', 'Lalb_Chr02g0151571' => 'lal', 'Lalb_Chr02g0151581' => 'lal', 'Lalb_Chr02g0151591' => 'lal', 'Lalb_Chr02g0151601' => 'lal', 'Lalb_Chr02g0151611' => 'lal', 'Lalb_Chr02g0151621' => 'lal', 'Lalb_Chr02g0151631' => 'lal', 'Lalb_Chr02g0151691' => 'lal', 'Lalb_Chr02g0155031' => 'lal', 'Lalb_Chr21g0313291' => 'lal', 'Lalb_Chr25g0288511' => 'lal', 'Lj1g0011779' => 'lja', 'Lj1g0021660' => 'lja', 'Lj2A134T53' => 'lonja', 'Lj2C30T14' => 'lonja', 'Lj3A999G44' => 'lonja', 'Lj5g0008591' => 'lja', 'Lj5g0012510' => 'lja', 'Lj5g0016287' => 'lja', 'Lj5g0017834' => 'lja', 'Lj5g0024260' => 'lja', 'Lj5g0028235' => 'lja', 'Lsat_1_v5_gn_6_24301' => 'lsa', 'Lsat_1_v5_gn_8_23801' => 'lsa', 'Manes.08G023700' => 'mes', 'Manes.09G057000' => 'mes', 'Manes.10G057800' => 'mes', 'Mapoly0009s0242' => 'mpo', 'Mapoly0016s0185' => 'mpo', 'Mapoly0053s0104' => 'mpo', 'MBI17_g16885_MAGBIO' => 'mbi', 'MBI17_g16886_MAGBIO' => 'mbi', 'MD02G1255500' => 'mdo', 'MD07G1066000' => 'mdo', 'MD12G1022800' => 'mdo', 'MD14G1019600' => 'mdo', 'Medtr1g060490' => 'mtr', 'Medtr1g060500' => 'mtr', 'Medtr1g060520' => 'mtr', 'Medtr1g060530' => 'mtr', 'Medtr1g092690' => 'mtr', 'Medtr1g092710' => 'mtr', 'Medtr1g092740' => 'mtr', 'Medtr1g092750' => 'mtr', 'Medtr1g092760' => 'mtr', 'Medtr7g104220' => 'mtr', 'MELO3C009459.2' => 'cme', 'MELO3C024531.2' => 'cme', 'MELO3C024532.2' => 'cme', 'MELO3C024533.2' => 'cme', 'MELO3C024534.2' => 'cme', 'Migut.J01060' => 'egut', 'Migut.J01061' => 'egut', 'Migut.J01062' => 'egut', 'Migut.J01063' => 'egut', 'Migut.J01064' => 'egut', 'MSTRG.19247' => 'ama', 'MSTRG.5826' => 'ama', 'MSTRG.9099' => 'ama', 'Nitab4.5_0000794g0060' => 'nta', 'Nitab4.5_0001437g0200' => 'nta', 'Nitab4.5_0002400g0050' => 'nta', 'Nitab4.5_0010239g0010' => 'nta', 'Nn2g14091' => 'nnu', 'Nn2g14093' => 'nnu', 'Nn2g14096' => 'nnu', 'Nn2g14097' => 'nnu', 'Nn2g14098' => 'nnu', 'Nn2g14100' => 'nnu', 'Nn2g14101' => 'nnu', 'Nn6g34968' => 'nnu', 'Nn6g34969' => 'nnu', 'Nn6g34970' => 'nnu', 'Nn6g34971' => 'nnu', 'Nn6g34974' => 'nnu', 'Oeu026189.1' => 'oeu', 'Oeu030895.1' => 'oeu', 'Oeu056912.1' => 'oeu', 'Os04g0650200' => 'osa', 'Os09g0567800' => 'osa', 'Peaxi162Scf00036g00217' => 'pax', 'Peaxi162Scf00173g00091' => 'pax', 'PGR004G0732' => 'pgr', 'PGR142G0098' => 'pgr', 'PGR142G1676' => 'pgr', 'PGR142G2526' => 'pgr', 'PGR142G3811' => 'pgr', 'PGR142G4029' => 'pgr', 'PGSC0003DMG400008961' => 'stu', 'PGSC0003DMG400019470' => 'stu', 'Phvul.001G188600' => 'pvu', 'Phvul.007G103600' => 'pvu', 'Phvul.007G103700' => 'pvu', 'Phvul.007G228600' => 'pvu', 'Potri.001G406500' => 'ptr', 'Potri.005G053100' => 'ptr', 'Potri.010G230100' => 'ptr', 'Potri.010G236800' => 'ptr', 'Potri.010G236951' => 'ptr', 'Potri.010G237000' => 'ptr', 'Pp3c10_5750' => 'ppa', 'Pp3c11_12330' => 'ppa', 'Pp3c14_4080' => 'ppa', 'Pp3c1_16800' => 'ppa', 'Pp3c1_2040' => 'ppa', 'Pp3c1_22780' => 'ppa', 'Pp3c2_17490' => 'ppa', 'Pp3c2_23550' => 'ppa', 'Pp3c2_30910' => 'ppa', 'Pp3c2_33980' => 'ppa', 'Pp3c6_1880' => 'ppa', 'Pp3c7_22870' => 'ppa', 'Prupe.2G080100' => 'ppe', 'Prupe.2G080200' => 'ppe', 'Prupe.2G080500' => 'ppe', 'Prupe.2G080800' => 'ppe', 'Prupe.2G081000' => 'ppe', 'Prupe.7G114000' => 'ppe', 'Psat0s1572g0040' => 'psa', 'Psat0s3683g0040' => 'psa', 'Psat0s3683g0080' => 'psa', 'Psat3g034560' => 'psa', 'Psat3g053480' => 'psa', 'Psat6g081800' => 'psa', 'Psat6g081880' => 'psa', 'Psat6g177360' => 'psa', 'Psat6g177400' => 'psa', 'Psat6g177440' => 'psa', 'Psat6g177520' => 'psa', 'PSO339G1207' => 'pso', 'PSO339G1693' => 'pso', 'PSO339G3644' => 'pso', 'PSO384G1098' => 'pso', 'PSO384G2006' => 'pso', 'PSO384G2773' => 'pso', 'PSO384G2987' => 'pso', 'PSO425G0023' => 'pso', 'PSO425G0031' => 'pso', 'PSO425G0053' => 'pso', 'QL04p048518' => 'qlo', 'QL07p039494' => 'qlo', 'QL07p039507' => 'qlo', 'QL07p039525' => 'qlo', 'RcHm_v2.0_Chr1g0332821' => 'rch', 'RcHm_v2.0_Chr1g0332841' => 'rch', 'RcHm_v2.0_Chr3g0472731' => 'rch', 'RcHm_v2.0_Chr3g0472801' => 'rch', 'RcHm_v2.0_Chr3g0472831' => 'rch', 'Rhsim03G0077500' => 'rsi', 'Rhsim03G0077600' => 'rsi', 'Rhsim03G0077800' => 'rsi', 'Rhsim03G0077900' => 'rsi', 'Rhsim03G0079700' => 'rsi', 'Rhsim03G0101300' => 'rsi', 'Sabra10G0178500' => 'sbr', 'Sabra10G0183700' => 'sbr', 'Sabra10G0183900' => 'sbr', 'Sabra10G0184100' => 'sbr', 'Sabra10G0184300' => 'sbr', 'Sabra10G0184600' => 'sbr', 'Sabra10G0184700' => 'sbr', 'Sabra10G0184800' => 'sbr', 'Sabra10G0185100' => 'sbr', 'Sabra10G0185200' => 'sbr', 'Sabra10G0185300' => 'sbr', 'Sabra10G0185400' => 'sbr', 'Sabra10G0185500' => 'sbr', 'Sabra16G0267900' => 'sbr', 'Sabra16G0269800' => 'sbr', 'Sabra16G0270000' => 'sbr', 'Sabra16G0270100' => 'sbr', 'SalBow3G0308' => 'sbo', 'SalBow6G3537' => 'sbo', 'Sc02g0000990' => 'sci', 'Sc09g0005500' => 'sci', 'Sed0002253' => 'sed', 'Sed0005197' => 'sed', 'Sed0018050' => 'sed', 'Sed0018556' => 'sed', 'SEGI_10490' => 'sgi', 'SEGI_10505' => 'sgi', 'SEGI_11525' => 'sgi', 'SEGI_12869' => 'sgi', 'SEGI_15309' => 'sgi', 'SEGI_17967' => 'sgi', 'SEGI_18743' => 'sgi', 'SEGI_23111' => 'sgi', 'SEGI_23899' => 'sgi', 'SEGI_24400' => 'sgi', 'SEGI_25685' => 'sgi', 'SEGI_25938' => 'sgi', 'SEGI_27429' => 'sgi', 'SEGI_32829' => 'sgi', 'SEGI_36021' => 'sgi', 'SEGI_36818' => 'sgi', 'SEGI_39508' => 'sgi', 'SGA_v2.0_scaffold13G06760' => 'sas', 'SGA_v2.0_scaffold75G24763' => 'sas', 'SHI21297' => 'shi', 'Solyc11g007180.3' => 'sly', 'Sopen09g004460' => 'spe', 'Sopen11g003100' => 'spe', 'Sp2g03340' => 'spa', 'Sp2g07320' => 'spa', 'Sp3g08290' => 'spa', 'Sp4g18570' => 'spa', 'Sp6g39140' => 'spa', 'Sp6g39150' => 'spa', 'Sp6g39160' => 'spa', 'SpUn0101_0040' => 'spa', 'TAR633G0764' => 'tar', 'TAR636G3325' => 'tar', 'THA.LOC104826927' => 'tha', 'THA.LOC104827516' => 'tha', 'Thecc.05G085700' => 'tca', 'Thhalv10013924m.g' => 'esa', 'Thhalv10013966m.g' => 'esa', 'Thhalv10022090m.g' => 'esa', 'Thhalv10024112m.g' => 'esa', 'TPR.G11005' => 'tpr', 'TPR.G18682' => 'tpr', 'TPR.G18685' => 'tpr', 'TPR.G18701' => 'tpr', 'TPR.G18703' => 'tpr', 'TPR.G19524' => 'tpr', 'TPR.G32995' => 'tpr', 'TPR.G35427' => 'tpr', 'TWI15G0335' => 'twi', 'TWI38G1588' => 'twi', 'TWI38G1650' => 'twi', 'TWI38G2041' => 'twi', 'TWI53G1983' => 'twi', 'TWI63G0365' => 'twi', 'TWI63G1599' => 'twi', 'TWI74G0331' => 'twi', 'unitig_22.g5123' => 'ugi', 'unitig_22.g5124' => 'ugi', 'vmacro07391' => 'vma', 'vmacro07392' => 'vma', 'vmacro07393' => 'vma', 'vmacro23531' => 'vma', 'VMungo0720G0574' => 'vmu', 'VMungo0720G0666' => 'vmu', 'VMungo0720G1711' => 'vmu', 'VMungo1383G0419' => 'vmu', 'Zm00001eb121580' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001381' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001381' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001381' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001381' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001381', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '453', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p20070' => 'bna', 'A05p39070' => 'bna', 'A09p19780' => 'bna', 'A09p19940' => 'bna', 'Aa31LG1G21610' => 'aar', 'Aa31LG3G2420' => 'aar', 'Aa31LG5G21480' => 'aar', 'Aa31LG5G21490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.317' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3467' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2468' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2469' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2154' => 'aag', 'AL2G26550' => 'aly', 'AL3G21210' => 'aly', 'AL4G32470' => 'aly', 'AL6G13100' => 'aly', 'AL6G13110' => 'aly', 'AL6G13120' => 'aly', 'Aqoxy4G02820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5BA12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JV9UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B65H15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TAJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2ULVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9ZRDB' => 'arhy', 'AT2G36325' => 'ath', 'AT3G09930' => 'ath', 'AT5G03590' => 'ath', 'AT5G03600' => 'ath', 'AT5G03610' => 'ath', 'ATR0820G228' => 'atr', 'Atru.chr12.994' => 'acertr', 'Atru.chr12.995' => 'acertr', 'Atru.chr12.996' => 'acertr', 'Atru.chr8.1577' => 'acertr', 'Atru.chr8.1580' => 'acertr', 'Atru.chr8.1582' => 'acertr', 'AUR62028565' => 'cqu', 'AUR62033521' => 'cqu', 'BcaB01g03846' => 'bca', 'BcaB01g05797' => 'bca', 'BcaB05g21823' => 'bca', 'BcaB05g21824' => 'bca', 'BcaB05g21827' => 'bca', 'BcaB05g22918' => 'bca', 'BcaB07g31056' => 'bca', 'BcaB07g31070' => 'bca', 'BcaB07g31071' => 'bca', 'BcaC01g05664' => 'bca', 'BcaC03g12994' => 'bca', 'BcaC03g12995' => 'bca', 'BcaC03g12996' => 'bca', 'BcaC03g13004' => 'bca', 'BcaC03g13005' => 'bca', 'BcaC04g21977' => 'bca', 'BcaC04g21992' => 'bca', 'BcaC05g29509' => 'bca', 'BolC3t12717H' => 'bol', 'BolC3t14747H' => 'bol', 'BolC5t34467H' => 'bol', 'BolC9t55403H' => 'bol', 'BolC9t55423H' => 'bol', 'BraA02t04769Z' => 'bra', 'BraA03t11257Z' => 'bra', 'BraA05t22699Z' => 'bra', 'BraA09t37583Z' => 'bra', 'BraA09t37602Z' => 'bra', 'BraA09t37603Z' => 'bra', 'C02p01170' => 'bna', 'C03p01650' => 'bna', 'C03p23510' => 'bna', 'C05p58090' => 'bna', 'C09p25080' => 'bna', 'C09p25100' => 'bna', 'C09p25250' => 'bna', 'CAN.G397.36' => 'can', 'CAN.G730.42' => 'can', 'CANSAT56G0146' => 'cansat', 'CANSAT56G2150' => 'cansat', 'CANSAT56G4316' => 'cansat', 'CANSAT80G0513' => 'cansat', 'CARHR084460' => 'chi', 'CARHR209690' => 'chi', 'CARHR209700' => 'chi', 'CARHR209730' => 'chi', 'Carub.0002s1426' => 'cru', 'Carub.0003s0904' => 'cru', 'Carub.0004s1810' => 'cru', 'Carub.0006s0243' => 'cru', 'Carub.0006s0244' => 'cru', 'Carub.0006s0245' => 'cru', 'Carub.0006s0249' => 'cru', 'Carub.0006s0251' => 'cru', 'Carub.0006s0252' => 'cru', 'Ca_08985_v3' => 'car', 'Ca_22053_v3' => 'car', 'CBR_g31448' => 'cbr', 'Cc00_g18870' => 'ccan', 'Cc06_g05550' => 'ccan', 'CDE06G0997' => 'cde', 'CDE06G2052' => 'cde', 'CDE08G0500' => 'cde', 'Cfa016577' => 'cfa', 'Cfa016578' => 'cfa', 'Cfa016581' => 'cfa', 'Ciclev10011959m.g' => 'ccl', 'Ciclev10033495m.g' => 'ccl', 'Ciclev10033618m.g' => 'ccl', 'CiPaw.09G011200' => 'cil', 'CiPaw.09G011300' => 'cil', 'CiPaw.09G011500' => 'cil', 'CiPaw.10G007600' => 'cil', 'CiPaw.10G007700' => 'cil', 'CiPaw.10G007800' => 'cil', 'CiPaw.10G007900' => 'cil', 'CiPaw.10G008000' => 'cil', 'ClCG04G009910' => 'cla', 'ClCG04G009920' => 'cla', 'ClCG04G009930' => 'cla', 'ClCG10G019120' => 'cla', 'COL.COLO4_29779' => 'col', 'COL.COLO4_38595' => 'col', 'Cpa.g.sc5.47' => 'cpa', 'CsaV3_3G037140' => 'csa', 'CsaV3_6G040560' => 'csa', 'CsaV3_6G040570' => 'csa', 'CsaV3_6G040580' => 'csa', 'CSS0005027' => 'camsi', 'CSS0012848' => 'camsi', 'CSS0041359' => 'camsi', 'DCAR_009152' => 'dca', 'Dinv14518' => 'din', 'Dinv17089' => 'din', 'Dinv20787' => 'din', 'Dinv21225' => 'din', 'Dinv31665' => 'din', 'Duzib093G1251' => 'dzi', 'Duzib106G1088' => 'dzi', 'Duzib128G1491' => 'dzi', 'EL10Ac7g16946' => 'bvu', 'Eucgr.A01521' => 'egr', 'Eucgr.G02700' => 'egr', 'Eucgr.K02058' => 'egr', 'Eucgr.K02059' => 'egr', 'FAN01G0469' => 'fan', 'FAN02G2318' => 'fan', 'FAN02G2533' => 'fan', 'FAN02G2846' => 'fan', 'FAN03G0810' => 'fan', 'FAN06G0876' => 'fan', 'FAN10G0210' => 'fan', 'FAN14G2127' => 'fan', 'FAN14G3804' => 'fan', 'FAN14G4188' => 'fan', 'FAN14G4710' => 'fan', 'FvH4_6g18290' => 'fve', 'FvH4_6g18330' => 'fve', 'FvH4_6g18350' => 'fve', 'FvH4_7g05761' => 'fve', 'FvH4_7g05772' => 'fve', 'Glyma.03G193600' => 'gma', 'Glyma.06G251900' => 'gma', 'Glyma.10G070500' => 'gma', 'Glyma.10G203350' => 'gma', 'Glyma.13G152950' => 'gma', 'Glyma.19G193500' => 'gma', 'Gohir.A01G207400' => 'ghi', 'Gohir.A04G064400' => 'ghi', 'Gohir.A09G171000' => 'ghi', 'Gohir.A12G091400' => 'ghi', 'Gohir.D01G196900' => 'ghi', 'Gohir.D04G101800' => 'ghi', 'Gohir.D09G166700' => 'ghi', 'Gohir.D12G091300' => 'ghi', 'Gorai.002G241000' => 'gra', 'Gorai.006G188500' => 'gra', 'Gorai.008G098800' => 'gra', 'Gorai.009G405200' => 'gra', 'GSVIVG01011220001' => 'vvi', 'GSVIVG01011222001' => 'vvi', 'GSVIVG01011232001' => 'vvi', 'GSVIVG01011239001' => 'vvi', 'GSVIVG01011247001' => 'vvi', 'GSVIVG01033808001' => 'vvi', 'HanXRQChr02g0051281' => 'han', 'HanXRQChr02g0051441' => 'han', 'HanXRQChr08g0217821' => 'han', 'HanXRQChr09g0255881' => 'han', 'HanXRQChr13g0401951' => 'han', 'Haze_19574' => 'cav', 'Haze_19575' => 'cav', 'Haze_19581' => 'cav', 'Hma1.2p1_0084F.1_g043520' => 'hma', 'Hma1.2p1_0246F.1_g101630' => 'hma', 'Hund03970' => 'sun', 'Hund06775' => 'sun', 'Lalb_Chr01g0018251' => 'lal', 'Lalb_Chr02g0151481' => 'lal', 'Lalb_Chr02g0151491' => 'lal', 'Lalb_Chr02g0151501' => 'lal', 'Lalb_Chr02g0151511' => 'lal', 'Lalb_Chr02g0151521' => 'lal', 'Lalb_Chr02g0151531' => 'lal', 'Lalb_Chr02g0151541' => 'lal', 'Lalb_Chr02g0151551' => 'lal', 'Lalb_Chr02g0151561' => 'lal', 'Lalb_Chr02g0151571' => 'lal', 'Lalb_Chr02g0151581' => 'lal', 'Lalb_Chr02g0151591' => 'lal', 'Lalb_Chr02g0151601' => 'lal', 'Lalb_Chr02g0151611' => 'lal', 'Lalb_Chr02g0151621' => 'lal', 'Lalb_Chr02g0151631' => 'lal', 'Lalb_Chr02g0151691' => 'lal', 'Lalb_Chr02g0155031' => 'lal', 'Lalb_Chr21g0313291' => 'lal', 'Lalb_Chr25g0288511' => 'lal', 'Lj1g0011779' => 'lja', 'Lj1g0021660' => 'lja', 'Lj2A134T53' => 'lonja', 'Lj2C30T14' => 'lonja', 'Lj3A999G44' => 'lonja', 'Lj5g0008591' => 'lja', 'Lj5g0012510' => 'lja', 'Lj5g0016287' => 'lja', 'Lj5g0017834' => 'lja', 'Lj5g0024260' => 'lja', 'Lj5g0028235' => 'lja', 'Lsat_1_v5_gn_6_24301' => 'lsa', 'Lsat_1_v5_gn_8_23801' => 'lsa', 'Manes.08G023700' => 'mes', 'Manes.09G057000' => 'mes', 'Manes.10G057800' => 'mes', 'Mapoly0009s0242' => 'mpo', 'Mapoly0016s0185' => 'mpo', 'Mapoly0053s0104' => 'mpo', 'MBI17_g16885_MAGBIO' => 'mbi', 'MBI17_g16886_MAGBIO' => 'mbi', 'MD02G1255500' => 'mdo', 'MD07G1066000' => 'mdo', 'MD12G1022800' => 'mdo', 'MD14G1019600' => 'mdo', 'Medtr1g060490' => 'mtr', 'Medtr1g060500' => 'mtr', 'Medtr1g060520' => 'mtr', 'Medtr1g060530' => 'mtr', 'Medtr1g092690' => 'mtr', 'Medtr1g092710' => 'mtr', 'Medtr1g092740' => 'mtr', 'Medtr1g092750' => 'mtr', 'Medtr1g092760' => 'mtr', 'Medtr7g104220' => 'mtr', 'MELO3C009459.2' => 'cme', 'MELO3C024531.2' => 'cme', 'MELO3C024532.2' => 'cme', 'MELO3C024533.2' => 'cme', 'MELO3C024534.2' => 'cme', 'Migut.J01060' => 'egut', 'Migut.J01061' => 'egut', 'Migut.J01062' => 'egut', 'Migut.J01063' => 'egut', 'Migut.J01064' => 'egut', 'MSTRG.19247' => 'ama', 'MSTRG.5826' => 'ama', 'MSTRG.9099' => 'ama', 'Nitab4.5_0000794g0060' => 'nta', 'Nitab4.5_0001437g0200' => 'nta', 'Nitab4.5_0002400g0050' => 'nta', 'Nitab4.5_0010239g0010' => 'nta', 'Nn2g14091' => 'nnu', 'Nn2g14093' => 'nnu', 'Nn2g14096' => 'nnu', 'Nn2g14097' => 'nnu', 'Nn2g14098' => 'nnu', 'Nn2g14100' => 'nnu', 'Nn2g14101' => 'nnu', 'Nn6g34968' => 'nnu', 'Nn6g34969' => 'nnu', 'Nn6g34970' => 'nnu', 'Nn6g34971' => 'nnu', 'Nn6g34974' => 'nnu', 'Oeu026189.1' => 'oeu', 'Oeu030895.1' => 'oeu', 'Oeu056912.1' => 'oeu', 'Os04g0650200' => 'osa', 'Os09g0567800' => 'osa', 'Peaxi162Scf00036g00217' => 'pax', 'Peaxi162Scf00173g00091' => 'pax', 'PGR004G0732' => 'pgr', 'PGR142G0098' => 'pgr', 'PGR142G1676' => 'pgr', 'PGR142G2526' => 'pgr', 'PGR142G3811' => 'pgr', 'PGR142G4029' => 'pgr', 'PGSC0003DMG400008961' => 'stu', 'PGSC0003DMG400019470' => 'stu', 'Phvul.001G188600' => 'pvu', 'Phvul.007G103600' => 'pvu', 'Phvul.007G103700' => 'pvu', 'Phvul.007G228600' => 'pvu', 'Potri.001G406500' => 'ptr', 'Potri.005G053100' => 'ptr', 'Potri.010G230100' => 'ptr', 'Potri.010G236800' => 'ptr', 'Potri.010G236951' => 'ptr', 'Potri.010G237000' => 'ptr', 'Pp3c10_5750' => 'ppa', 'Pp3c11_12330' => 'ppa', 'Pp3c14_4080' => 'ppa', 'Pp3c1_16800' => 'ppa', 'Pp3c1_2040' => 'ppa', 'Pp3c1_22780' => 'ppa', 'Pp3c2_17490' => 'ppa', 'Pp3c2_23550' => 'ppa', 'Pp3c2_30910' => 'ppa', 'Pp3c2_33980' => 'ppa', 'Pp3c6_1880' => 'ppa', 'Pp3c7_22870' => 'ppa', 'Prupe.2G080100' => 'ppe', 'Prupe.2G080200' => 'ppe', 'Prupe.2G080500' => 'ppe', 'Prupe.2G080800' => 'ppe', 'Prupe.2G081000' => 'ppe', 'Prupe.7G114000' => 'ppe', 'Psat0s1572g0040' => 'psa', 'Psat0s3683g0040' => 'psa', 'Psat0s3683g0080' => 'psa', 'Psat3g034560' => 'psa', 'Psat3g053480' => 'psa', 'Psat6g081800' => 'psa', 'Psat6g081880' => 'psa', 'Psat6g177360' => 'psa', 'Psat6g177400' => 'psa', 'Psat6g177440' => 'psa', 'Psat6g177520' => 'psa', 'PSO339G1207' => 'pso', 'PSO339G1693' => 'pso', 'PSO339G3644' => 'pso', 'PSO384G1098' => 'pso', 'PSO384G2006' => 'pso', 'PSO384G2773' => 'pso', 'PSO384G2987' => 'pso', 'PSO425G0023' => 'pso', 'PSO425G0031' => 'pso', 'PSO425G0053' => 'pso', 'QL04p048518' => 'qlo', 'QL07p039494' => 'qlo', 'QL07p039507' => 'qlo', 'QL07p039525' => 'qlo', 'RcHm_v2.0_Chr1g0332821' => 'rch', 'RcHm_v2.0_Chr1g0332841' => 'rch', 'RcHm_v2.0_Chr3g0472731' => 'rch', 'RcHm_v2.0_Chr3g0472801' => 'rch', 'RcHm_v2.0_Chr3g0472831' => 'rch', 'Rhsim03G0077500' => 'rsi', 'Rhsim03G0077600' => 'rsi', 'Rhsim03G0077800' => 'rsi', 'Rhsim03G0077900' => 'rsi', 'Rhsim03G0079700' => 'rsi', 'Rhsim03G0101300' => 'rsi', 'Sabra10G0178500' => 'sbr', 'Sabra10G0183700' => 'sbr', 'Sabra10G0183900' => 'sbr', 'Sabra10G0184100' => 'sbr', 'Sabra10G0184300' => 'sbr', 'Sabra10G0184600' => 'sbr', 'Sabra10G0184700' => 'sbr', 'Sabra10G0184800' => 'sbr', 'Sabra10G0185100' => 'sbr', 'Sabra10G0185200' => 'sbr', 'Sabra10G0185300' => 'sbr', 'Sabra10G0185400' => 'sbr', 'Sabra10G0185500' => 'sbr', 'Sabra16G0267900' => 'sbr', 'Sabra16G0269800' => 'sbr', 'Sabra16G0270000' => 'sbr', 'Sabra16G0270100' => 'sbr', 'SalBow3G0308' => 'sbo', 'SalBow6G3537' => 'sbo', 'Sc02g0000990' => 'sci', 'Sc09g0005500' => 'sci', 'Sed0002253' => 'sed', 'Sed0005197' => 'sed', 'Sed0018050' => 'sed', 'Sed0018556' => 'sed', 'SEGI_10490' => 'sgi', 'SEGI_10505' => 'sgi', 'SEGI_11525' => 'sgi', 'SEGI_12869' => 'sgi', 'SEGI_15309' => 'sgi', 'SEGI_17967' => 'sgi', 'SEGI_18743' => 'sgi', 'SEGI_23111' => 'sgi', 'SEGI_23899' => 'sgi', 'SEGI_24400' => 'sgi', 'SEGI_25685' => 'sgi', 'SEGI_25938' => 'sgi', 'SEGI_27429' => 'sgi', 'SEGI_32829' => 'sgi', 'SEGI_36021' => 'sgi', 'SEGI_36818' => 'sgi', 'SEGI_39508' => 'sgi', 'SGA_v2.0_scaffold13G06760' => 'sas', 'SGA_v2.0_scaffold75G24763' => 'sas', 'SHI21297' => 'shi', 'Solyc11g007180.3' => 'sly', 'Sopen09g004460' => 'spe', 'Sopen11g003100' => 'spe', 'Sp2g03340' => 'spa', 'Sp2g07320' => 'spa', 'Sp3g08290' => 'spa', 'Sp4g18570' => 'spa', 'Sp6g39140' => 'spa', 'Sp6g39150' => 'spa', 'Sp6g39160' => 'spa', 'SpUn0101_0040' => 'spa', 'TAR633G0764' => 'tar', 'TAR636G3325' => 'tar', 'THA.LOC104826927' => 'tha', 'THA.LOC104827516' => 'tha', 'Thecc.05G085700' => 'tca', 'Thhalv10013924m.g' => 'esa', 'Thhalv10013966m.g' => 'esa', 'Thhalv10022090m.g' => 'esa', 'Thhalv10024112m.g' => 'esa', 'TPR.G11005' => 'tpr', 'TPR.G18682' => 'tpr', 'TPR.G18685' => 'tpr', 'TPR.G18701' => 'tpr', 'TPR.G18703' => 'tpr', 'TPR.G19524' => 'tpr', 'TPR.G32995' => 'tpr', 'TPR.G35427' => 'tpr', 'TWI15G0335' => 'twi', 'TWI38G1588' => 'twi', 'TWI38G1650' => 'twi', 'TWI38G2041' => 'twi', 'TWI53G1983' => 'twi', 'TWI63G0365' => 'twi', 'TWI63G1599' => 'twi', 'TWI74G0331' => 'twi', 'unitig_22.g5123' => 'ugi', 'unitig_22.g5124' => 'ugi', 'vmacro07391' => 'vma', 'vmacro07392' => 'vma', 'vmacro07393' => 'vma', 'vmacro23531' => 'vma', 'VMungo0720G0574' => 'vmu', 'VMungo0720G0666' => 'vmu', 'VMungo0720G1711' => 'vmu', 'VMungo1383G0419' => 'vmu', 'Zm00001eb121580' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001381', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001381' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001381', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '453', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001381' ) ), 'genes' => array( 'A03p20070' => 'bna', 'A05p39070' => 'bna', 'A09p19780' => 'bna', 'A09p19940' => 'bna', 'Aa31LG1G21610' => 'aar', 'Aa31LG3G2420' => 'aar', 'Aa31LG5G21480' => 'aar', 'Aa31LG5G21490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.317' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3467' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2468' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2469' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2154' => 'aag', 'AL2G26550' => 'aly', 'AL3G21210' => 'aly', 'AL4G32470' => 'aly', 'AL6G13100' => 'aly', 'AL6G13110' => 'aly', 'AL6G13120' => 'aly', 'Aqoxy4G02820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5BA12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JV9UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B65H15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TAJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2ULVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9ZRDB' => 'arhy', 'AT2G36325' => 'ath', 'AT3G09930' => 'ath', 'AT5G03590' => 'ath', 'AT5G03600' => 'ath', 'AT5G03610' => 'ath', 'ATR0820G228' => 'atr', 'Atru.chr12.994' => 'acertr', 'Atru.chr12.995' => 'acertr', 'Atru.chr12.996' => 'acertr', 'Atru.chr8.1577' => 'acertr', 'Atru.chr8.1580' => 'acertr', 'Atru.chr8.1582' => 'acertr', 'AUR62028565' => 'cqu', 'AUR62033521' => 'cqu', 'BcaB01g03846' => 'bca', 'BcaB01g05797' => 'bca', 'BcaB05g21823' => 'bca', 'BcaB05g21824' => 'bca', 'BcaB05g21827' => 'bca', 'BcaB05g22918' => 'bca', 'BcaB07g31056' => 'bca', 'BcaB07g31070' => 'bca', 'BcaB07g31071' => 'bca', 'BcaC01g05664' => 'bca', 'BcaC03g12994' => 'bca', 'BcaC03g12995' => 'bca', 'BcaC03g12996' => 'bca', 'BcaC03g13004' => 'bca', 'BcaC03g13005' => 'bca', 'BcaC04g21977' => 'bca', 'BcaC04g21992' => 'bca', 'BcaC05g29509' => 'bca', 'BolC3t12717H' => 'bol', 'BolC3t14747H' => 'bol', 'BolC5t34467H' => 'bol', 'BolC9t55403H' => 'bol', 'BolC9t55423H' => 'bol', 'BraA02t04769Z' => 'bra', 'BraA03t11257Z' => 'bra', 'BraA05t22699Z' => 'bra', 'BraA09t37583Z' => 'bra', 'BraA09t37602Z' => 'bra', 'BraA09t37603Z' => 'bra', 'C02p01170' => 'bna', 'C03p01650' => 'bna', 'C03p23510' => 'bna', 'C05p58090' => 'bna', 'C09p25080' => 'bna', 'C09p25100' => 'bna', 'C09p25250' => 'bna', 'CAN.G397.36' => 'can', 'CAN.G730.42' => 'can', 'CANSAT56G0146' => 'cansat', 'CANSAT56G2150' => 'cansat', 'CANSAT56G4316' => 'cansat', 'CANSAT80G0513' => 'cansat', 'CARHR084460' => 'chi', 'CARHR209690' => 'chi', 'CARHR209700' => 'chi', 'CARHR209730' => 'chi', 'Carub.0002s1426' => 'cru', 'Carub.0003s0904' => 'cru', 'Carub.0004s1810' => 'cru', 'Carub.0006s0243' => 'cru', 'Carub.0006s0244' => 'cru', 'Carub.0006s0245' => 'cru', 'Carub.0006s0249' => 'cru', 'Carub.0006s0251' => 'cru', 'Carub.0006s0252' => 'cru', 'Ca_08985_v3' => 'car', 'Ca_22053_v3' => 'car', 'CBR_g31448' => 'cbr', 'Cc00_g18870' => 'ccan', 'Cc06_g05550' => 'ccan', 'CDE06G0997' => 'cde', 'CDE06G2052' => 'cde', 'CDE08G0500' => 'cde', 'Cfa016577' => 'cfa', 'Cfa016578' => 'cfa', 'Cfa016581' => 'cfa', 'Ciclev10011959m.g' => 'ccl', 'Ciclev10033495m.g' => 'ccl', 'Ciclev10033618m.g' => 'ccl', 'CiPaw.09G011200' => 'cil', 'CiPaw.09G011300' => 'cil', 'CiPaw.09G011500' => 'cil', 'CiPaw.10G007600' => 'cil', 'CiPaw.10G007700' => 'cil', 'CiPaw.10G007800' => 'cil', 'CiPaw.10G007900' => 'cil', 'CiPaw.10G008000' => 'cil', 'ClCG04G009910' => 'cla', 'ClCG04G009920' => 'cla', 'ClCG04G009930' => 'cla', 'ClCG10G019120' => 'cla', 'COL.COLO4_29779' => 'col', 'COL.COLO4_38595' => 'col', 'Cpa.g.sc5.47' => 'cpa', 'CsaV3_3G037140' => 'csa', 'CsaV3_6G040560' => 'csa', 'CsaV3_6G040570' => 'csa', 'CsaV3_6G040580' => 'csa', 'CSS0005027' => 'camsi', 'CSS0012848' => 'camsi', 'CSS0041359' => 'camsi', 'DCAR_009152' => 'dca', 'Dinv14518' => 'din', 'Dinv17089' => 'din', 'Dinv20787' => 'din', 'Dinv21225' => 'din', 'Dinv31665' => 'din', 'Duzib093G1251' => 'dzi', 'Duzib106G1088' => 'dzi', 'Duzib128G1491' => 'dzi', 'EL10Ac7g16946' => 'bvu', 'Eucgr.A01521' => 'egr', 'Eucgr.G02700' => 'egr', 'Eucgr.K02058' => 'egr', 'Eucgr.K02059' => 'egr', 'FAN01G0469' => 'fan', 'FAN02G2318' => 'fan', 'FAN02G2533' => 'fan', 'FAN02G2846' => 'fan', 'FAN03G0810' => 'fan', 'FAN06G0876' => 'fan', 'FAN10G0210' => 'fan', 'FAN14G2127' => 'fan', 'FAN14G3804' => 'fan', 'FAN14G4188' => 'fan', 'FAN14G4710' => 'fan', 'FvH4_6g18290' => 'fve', 'FvH4_6g18330' => 'fve', 'FvH4_6g18350' => 'fve', 'FvH4_7g05761' => 'fve', 'FvH4_7g05772' => 'fve', 'Glyma.03G193600' => 'gma', 'Glyma.06G251900' => 'gma', 'Glyma.10G070500' => 'gma', 'Glyma.10G203350' => 'gma', 'Glyma.13G152950' => 'gma', 'Glyma.19G193500' => 'gma', 'Gohir.A01G207400' => 'ghi', 'Gohir.A04G064400' => 'ghi', 'Gohir.A09G171000' => 'ghi', 'Gohir.A12G091400' => 'ghi', 'Gohir.D01G196900' => 'ghi', 'Gohir.D04G101800' => 'ghi', 'Gohir.D09G166700' => 'ghi', 'Gohir.D12G091300' => 'ghi', 'Gorai.002G241000' => 'gra', 'Gorai.006G188500' => 'gra', 'Gorai.008G098800' => 'gra', 'Gorai.009G405200' => 'gra', 'GSVIVG01011220001' => 'vvi', 'GSVIVG01011222001' => 'vvi', 'GSVIVG01011232001' => 'vvi', 'GSVIVG01011239001' => 'vvi', 'GSVIVG01011247001' => 'vvi', 'GSVIVG01033808001' => 'vvi', 'HanXRQChr02g0051281' => 'han', 'HanXRQChr02g0051441' => 'han', 'HanXRQChr08g0217821' => 'han', 'HanXRQChr09g0255881' => 'han', 'HanXRQChr13g0401951' => 'han', 'Haze_19574' => 'cav', 'Haze_19575' => 'cav', 'Haze_19581' => 'cav', 'Hma1.2p1_0084F.1_g043520' => 'hma', 'Hma1.2p1_0246F.1_g101630' => 'hma', 'Hund03970' => 'sun', 'Hund06775' => 'sun', 'Lalb_Chr01g0018251' => 'lal', 'Lalb_Chr02g0151481' => 'lal', 'Lalb_Chr02g0151491' => 'lal', 'Lalb_Chr02g0151501' => 'lal', 'Lalb_Chr02g0151511' => 'lal', 'Lalb_Chr02g0151521' => 'lal', 'Lalb_Chr02g0151531' => 'lal', 'Lalb_Chr02g0151541' => 'lal', 'Lalb_Chr02g0151551' => 'lal', 'Lalb_Chr02g0151561' => 'lal', 'Lalb_Chr02g0151571' => 'lal', 'Lalb_Chr02g0151581' => 'lal', 'Lalb_Chr02g0151591' => 'lal', 'Lalb_Chr02g0151601' => 'lal', 'Lalb_Chr02g0151611' => 'lal', 'Lalb_Chr02g0151621' => 'lal', 'Lalb_Chr02g0151631' => 'lal', 'Lalb_Chr02g0151691' => 'lal', 'Lalb_Chr02g0155031' => 'lal', 'Lalb_Chr21g0313291' => 'lal', 'Lalb_Chr25g0288511' => 'lal', 'Lj1g0011779' => 'lja', 'Lj1g0021660' => 'lja', 'Lj2A134T53' => 'lonja', 'Lj2C30T14' => 'lonja', 'Lj3A999G44' => 'lonja', 'Lj5g0008591' => 'lja', 'Lj5g0012510' => 'lja', 'Lj5g0016287' => 'lja', 'Lj5g0017834' => 'lja', 'Lj5g0024260' => 'lja', 'Lj5g0028235' => 'lja', 'Lsat_1_v5_gn_6_24301' => 'lsa', 'Lsat_1_v5_gn_8_23801' => 'lsa', 'Manes.08G023700' => 'mes', 'Manes.09G057000' => 'mes', 'Manes.10G057800' => 'mes', 'Mapoly0009s0242' => 'mpo', 'Mapoly0016s0185' => 'mpo', 'Mapoly0053s0104' => 'mpo', 'MBI17_g16885_MAGBIO' => 'mbi', 'MBI17_g16886_MAGBIO' => 'mbi', 'MD02G1255500' => 'mdo', 'MD07G1066000' => 'mdo', 'MD12G1022800' => 'mdo', 'MD14G1019600' => 'mdo', 'Medtr1g060490' => 'mtr', 'Medtr1g060500' => 'mtr', 'Medtr1g060520' => 'mtr', 'Medtr1g060530' => 'mtr', 'Medtr1g092690' => 'mtr', 'Medtr1g092710' => 'mtr', 'Medtr1g092740' => 'mtr', 'Medtr1g092750' => 'mtr', 'Medtr1g092760' => 'mtr', 'Medtr7g104220' => 'mtr', 'MELO3C009459.2' => 'cme', 'MELO3C024531.2' => 'cme', 'MELO3C024532.2' => 'cme', 'MELO3C024533.2' => 'cme', 'MELO3C024534.2' => 'cme', 'Migut.J01060' => 'egut', 'Migut.J01061' => 'egut', 'Migut.J01062' => 'egut', 'Migut.J01063' => 'egut', 'Migut.J01064' => 'egut', 'MSTRG.19247' => 'ama', 'MSTRG.5826' => 'ama', 'MSTRG.9099' => 'ama', 'Nitab4.5_0000794g0060' => 'nta', 'Nitab4.5_0001437g0200' => 'nta', 'Nitab4.5_0002400g0050' => 'nta', 'Nitab4.5_0010239g0010' => 'nta', 'Nn2g14091' => 'nnu', 'Nn2g14093' => 'nnu', 'Nn2g14096' => 'nnu', 'Nn2g14097' => 'nnu', 'Nn2g14098' => 'nnu', 'Nn2g14100' => 'nnu', 'Nn2g14101' => 'nnu', 'Nn6g34968' => 'nnu', 'Nn6g34969' => 'nnu', 'Nn6g34970' => 'nnu', 'Nn6g34971' => 'nnu', 'Nn6g34974' => 'nnu', 'Oeu026189.1' => 'oeu', 'Oeu030895.1' => 'oeu', 'Oeu056912.1' => 'oeu', 'Os04g0650200' => 'osa', 'Os09g0567800' => 'osa', 'Peaxi162Scf00036g00217' => 'pax', 'Peaxi162Scf00173g00091' => 'pax', 'PGR004G0732' => 'pgr', 'PGR142G0098' => 'pgr', 'PGR142G1676' => 'pgr', 'PGR142G2526' => 'pgr', 'PGR142G3811' => 'pgr', 'PGR142G4029' => 'pgr', 'PGSC0003DMG400008961' => 'stu', 'PGSC0003DMG400019470' => 'stu', 'Phvul.001G188600' => 'pvu', 'Phvul.007G103600' => 'pvu', 'Phvul.007G103700' => 'pvu', 'Phvul.007G228600' => 'pvu', 'Potri.001G406500' => 'ptr', 'Potri.005G053100' => 'ptr', 'Potri.010G230100' => 'ptr', 'Potri.010G236800' => 'ptr', 'Potri.010G236951' => 'ptr', 'Potri.010G237000' => 'ptr', 'Pp3c10_5750' => 'ppa', 'Pp3c11_12330' => 'ppa', 'Pp3c14_4080' => 'ppa', 'Pp3c1_16800' => 'ppa', 'Pp3c1_2040' => 'ppa', 'Pp3c1_22780' => 'ppa', 'Pp3c2_17490' => 'ppa', 'Pp3c2_23550' => 'ppa', 'Pp3c2_30910' => 'ppa', 'Pp3c2_33980' => 'ppa', 'Pp3c6_1880' => 'ppa', 'Pp3c7_22870' => 'ppa', 'Prupe.2G080100' => 'ppe', 'Prupe.2G080200' => 'ppe', 'Prupe.2G080500' => 'ppe', 'Prupe.2G080800' => 'ppe', 'Prupe.2G081000' => 'ppe', 'Prupe.7G114000' => 'ppe', 'Psat0s1572g0040' => 'psa', 'Psat0s3683g0040' => 'psa', 'Psat0s3683g0080' => 'psa', 'Psat3g034560' => 'psa', 'Psat3g053480' => 'psa', 'Psat6g081800' => 'psa', 'Psat6g081880' => 'psa', 'Psat6g177360' => 'psa', 'Psat6g177400' => 'psa', 'Psat6g177440' => 'psa', 'Psat6g177520' => 'psa', 'PSO339G1207' => 'pso', 'PSO339G1693' => 'pso', 'PSO339G3644' => 'pso', 'PSO384G1098' => 'pso', 'PSO384G2006' => 'pso', 'PSO384G2773' => 'pso', 'PSO384G2987' => 'pso', 'PSO425G0023' => 'pso', 'PSO425G0031' => 'pso', 'PSO425G0053' => 'pso', 'QL04p048518' => 'qlo', 'QL07p039494' => 'qlo', 'QL07p039507' => 'qlo', 'QL07p039525' => 'qlo', 'RcHm_v2.0_Chr1g0332821' => 'rch', 'RcHm_v2.0_Chr1g0332841' => 'rch', 'RcHm_v2.0_Chr3g0472731' => 'rch', 'RcHm_v2.0_Chr3g0472801' => 'rch', 'RcHm_v2.0_Chr3g0472831' => 'rch', 'Rhsim03G0077500' => 'rsi', 'Rhsim03G0077600' => 'rsi', 'Rhsim03G0077800' => 'rsi', 'Rhsim03G0077900' => 'rsi', 'Rhsim03G0079700' => 'rsi', 'Rhsim03G0101300' => 'rsi', 'Sabra10G0178500' => 'sbr', 'Sabra10G0183700' => 'sbr', 'Sabra10G0183900' => 'sbr', 'Sabra10G0184100' => 'sbr', 'Sabra10G0184300' => 'sbr', 'Sabra10G0184600' => 'sbr', 'Sabra10G0184700' => 'sbr', 'Sabra10G0184800' => 'sbr', 'Sabra10G0185100' => 'sbr', 'Sabra10G0185200' => 'sbr', 'Sabra10G0185300' => 'sbr', 'Sabra10G0185400' => 'sbr', 'Sabra10G0185500' => 'sbr', 'Sabra16G0267900' => 'sbr', 'Sabra16G0269800' => 'sbr', 'Sabra16G0270000' => 'sbr', 'Sabra16G0270100' => 'sbr', 'SalBow3G0308' => 'sbo', 'SalBow6G3537' => 'sbo', 'Sc02g0000990' => 'sci', 'Sc09g0005500' => 'sci', 'Sed0002253' => 'sed', 'Sed0005197' => 'sed', 'Sed0018050' => 'sed', 'Sed0018556' => 'sed', 'SEGI_10490' => 'sgi', 'SEGI_10505' => 'sgi', 'SEGI_11525' => 'sgi', 'SEGI_12869' => 'sgi', 'SEGI_15309' => 'sgi', 'SEGI_17967' => 'sgi', 'SEGI_18743' => 'sgi', 'SEGI_23111' => 'sgi', 'SEGI_23899' => 'sgi', 'SEGI_24400' => 'sgi', 'SEGI_25685' => 'sgi', 'SEGI_25938' => 'sgi', 'SEGI_27429' => 'sgi', 'SEGI_32829' => 'sgi', 'SEGI_36021' => 'sgi', 'SEGI_36818' => 'sgi', 'SEGI_39508' => 'sgi', 'SGA_v2.0_scaffold13G06760' => 'sas', 'SGA_v2.0_scaffold75G24763' => 'sas', 'SHI21297' => 'shi', 'Solyc11g007180.3' => 'sly', 'Sopen09g004460' => 'spe', 'Sopen11g003100' => 'spe', 'Sp2g03340' => 'spa', 'Sp2g07320' => 'spa', 'Sp3g08290' => 'spa', 'Sp4g18570' => 'spa', 'Sp6g39140' => 'spa', 'Sp6g39150' => 'spa', 'Sp6g39160' => 'spa', 'SpUn0101_0040' => 'spa', 'TAR633G0764' => 'tar', 'TAR636G3325' => 'tar', 'THA.LOC104826927' => 'tha', 'THA.LOC104827516' => 'tha', 'Thecc.05G085700' => 'tca', 'Thhalv10013924m.g' => 'esa', 'Thhalv10013966m.g' => 'esa', 'Thhalv10022090m.g' => 'esa', 'Thhalv10024112m.g' => 'esa', 'TPR.G11005' => 'tpr', 'TPR.G18682' => 'tpr', 'TPR.G18685' => 'tpr', 'TPR.G18701' => 'tpr', 'TPR.G18703' => 'tpr', 'TPR.G19524' => 'tpr', 'TPR.G32995' => 'tpr', 'TPR.G35427' => 'tpr', 'TWI15G0335' => 'twi', 'TWI38G1588' => 'twi', 'TWI38G1650' => 'twi', 'TWI38G2041' => 'twi', 'TWI53G1983' => 'twi', 'TWI63G0365' => 'twi', 'TWI63G1599' => 'twi', 'TWI74G0331' => 'twi', 'unitig_22.g5123' => 'ugi', 'unitig_22.g5124' => 'ugi', 'vmacro07391' => 'vma', 'vmacro07392' => 'vma', 'vmacro07393' => 'vma', 'vmacro23531' => 'vma', 'VMungo0720G0574' => 'vmu', 'VMungo0720G0666' => 'vmu', 'VMungo0720G1711' => 'vmu', 'VMungo1383G0419' => 'vmu', 'Zm00001eb121580' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001381' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001381' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001381' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001381' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151