Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001352', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '464', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p09630' => 'bna', 'A01p16490' => 'bna', 'A03p50530' => 'bna', 'A04p28730' => 'bna', 'A06p20250' => 'bna', 'A07p04010' => 'bna', 'A08p11070' => 'bna', 'A08p13220' => 'bna', 'A09p19260' => 'bna', 'A10p29150' => 'bna', 'Aa31LG3G10500' => 'aar', 'Aa31LG4G16220' => 'aar', 'Aa31LG6G11800' => 'aar', 'Aa31LG6G290' => 'aar', 'Aa31sc16G250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1564' => 'aag', 'Actinidia04241' => 'ach', 'Actinidia10856' => 'ach', 'Actinidia21915' => 'ach', 'Actinidia24698' => 'ach', 'Actinidia25902' => 'ach', 'Actinidia31500' => 'ach', 'Actinidia31783' => 'ach', 'Ah.07g207770' => 'amhyb', 'Ah.09g223930' => 'amhyb', 'Ah.12g054070' => 'amhyb', 'AL1G44600' => 'aly', 'AL3G45150' => 'aly', 'AL5G26640' => 'aly', 'AL7G27930' => 'aly', 'AL7G37070' => 'aly', 'Aqoxy3G02686' => 'aox', 'Aqoxy409s001' => 'aox', 'Aqoxy5G03902' => 'aox', 'Aqoxy5G03903' => 'aox', 'Aqoxy7G00750' => 'aox', 'Aqoxy7G03547' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5QUI8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8TQ98L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG4CQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8M0UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK9E2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIR7X4' => 'arhy', 'AT1G30560' => 'ath', 'AT2G13100' => 'ath', 'AT3G47420' => 'ath', 'AT4G17550' => 'ath', 'AT4G25220' => 'ath', 'ATR0317G121' => 'atr', 'ATR0665G665' => 'atr', 'ATR0767G126' => 'atr', 'Atru.chr1.725' => 'acertr', 'Atru.chr2.2273' => 'acertr', 'Atru.chr3.2577' => 'acertr', 'Atru.chr7.267' => 'acertr', 'Atru.chr9.1229' => 'acertr', 'AUR62002203' => 'cqu', 'AUR62007151' => 'cqu', 'AUR62011248' => 'cqu', 'AUR62015499' => 'cqu', 'AUR62018860' => 'cqu', 'AUR62041456' => 'cqu', 'BcaB01g00927' => 'bca', 'BcaB01g02682' => 'bca', 'BcaB03g16460' => 'bca', 'BcaB04g18210' => 'bca', 'BcaB04g18427' => 'bca', 'BcaC01g01827' => 'bca', 'BcaC03g14077' => 'bca', 'BcaC06g33559' => 'bca', 'BcaC06g36222' => 'bca', 'BcaC07g37811' => 'bca', 'BcaC07g38087' => 'bca', 'BcaC09g50796' => 'bca', 'BcaC09g51631' => 'bca', 'BcaNung00081' => 'bca', 'BcaNung03456' => 'bca', 'BcaNung06353' => 'bca', 'BolC1t01086H' => 'bol', 'BolC1t01996H' => 'bol', 'BolC3t19446H' => 'bol', 'BolC7t41053H' => 'bol', 'BolC7t45393H' => 'bol', 'BolC8t48200H' => 'bol', 'BolC8t48501H' => 'bol', 'BolC9t57242H' => 'bol', 'BolC9t57243H' => 'bol', 'BraA01t00905Z' => 'bra', 'BraA01t01603Z' => 'bra', 'BraA02t06003Z' => 'bra', 'BraA02t08062Z' => 'bra', 'BraA03t14142Z' => 'bra', 'BraA06t25107Z' => 'bra', 'BraA07t28192Z' => 'bra', 'BraA08t33101Z' => 'bra', 'BraA08t33305Z' => 'bra', 'C01p11200' => 'bna', 'C01p20700' => 'bna', 'C03p71520' => 'bna', 'C04p26810' => 'bna', 'C04p53500' => 'bna', 'C07p06370' => 'bna', 'C07p48850' => 'bna', 'C07p52870' => 'bna', 'CAN.G48.20' => 'can', 'CAN.G49.1' => 'can', 'CAN.G551.20' => 'can', 'CAN.G62.3' => 'can', 'CANSAT11G2569' => 'cansat', 'CANSAT21G0939' => 'cansat', 'CANSAT56G3821' => 'cansat', 'CARHR030010' => 'chi', 'CARHR105110' => 'chi', 'CARHR156060' => 'chi', 'CARHR224250' => 'chi', 'CARHR232620' => 'chi', 'Carub.0001s2882' => 'cru', 'Carub.0003s2785' => 'cru', 'Carub.0005s1351' => 'cru', 'Carub.0007s1581' => 'cru', 'Carub.0007s2384' => 'cru', 'Ca_17004_v3' => 'car', 'Ca_19622_v3' => 'car', 'Ca_22005_v3' => 'car', 'CBR_g25854' => 'cbr', 'CBR_g6311' => 'cbr', 'Cc02_g04240' => 'ccan', 'Cc06_g07490' => 'ccan', 'Cc08_g11500' => 'ccan', 'CDE02G2828' => 'cde', 'CDE04G1824' => 'cde', 'CDE06G1252' => 'cde', 'CDE07G1279' => 'cde', 'CDE09G0609' => 'cde', 'CDE11G0215' => 'cde', 'CDE11G0340' => 'cde', 'CDE11G0482' => 'cde', 'CDE12G0142' => 'cde', 'CDE12G0167' => 'cde', 'CDE12G0803' => 'cde', 'Cfa008169' => 'cfa', 'Cfa020901' => 'cfa', 'Ciclev10004728m.g' => 'ccl', 'Ciclev10008087m.g' => 'ccl', 'Ciclev10019641m.g' => 'ccl', 'CiPaw.03G093400' => 'cil', 'CiPaw.04G060000' => 'cil', 'CiPaw.12G047600' => 'cil', 'CiPaw.16G118200' => 'cil', 'ClCG01G005470' => 'cla', 'ClCG06G011970' => 'cla', 'COL.COLO4_14124' => 'col', 'COL.COLO4_21684' => 'col', 'COL.COLO4_24117' => 'col', 'Cpa.g.sc3.321' => 'cpa', 'Cpa.g.sc46.82' => 'cpa', 'Cpa.g.sc89.8' => 'cpa', 'Cre12.g503000' => 'cre', 'CsaV3_1G028430' => 'csa', 'CsaV3_5G005700' => 'csa', 'CSS0007503' => 'camsi', 'CSS0007899' => 'camsi', 'CSS0016319' => 'camsi', 'CSS0022696' => 'camsi', 'CSS0022717' => 'camsi', 'CSS0033927' => 'camsi', 'CSS0050500' => 'camsi', 'DCAR_000651' => 'dca', 'DCAR_004594' => 'dca', 'DCAR_008871' => 'dca', 'DCAR_018108' => 'dca', 'DCAR_020190' => 'dca', 'Dinv06557' => 'din', 'Dinv22948' => 'din', 'Dinv28570' => 'din', 'Dinv28862' => 'din', 'Dinv42921' => 'din', 'Dinv43179' => 'din', 'Duzib068G0426' => 'dzi', 'Duzib068G1196' => 'dzi', 'Duzib084G1015' => 'dzi', 'Duzib150G0190' => 'dzi', 'Duzib187G0384' => 'dzi', 'Duzib205G0734' => 'dzi', 'Duzib205G1196' => 'dzi', 'ECA232G0430' => 'eca', 'ECA233G5134' => 'eca', 'ECA234G1044' => 'eca', 'ECA238G2838' => 'eca', 'EL10Ac3g05844' => 'bvu', 'EL10Ac5g12289' => 'bvu', 'EL10Ac8g18809' => 'bvu', 'Eucgr.A02892' => 'egr', 'Eucgr.C04092' => 'egr', 'Eucgr.E00368' => 'egr', 'Eucgr.K00158' => 'egr', 'Eucgr.K00159' => 'egr', 'FAN01G2529' => 'fan', 'FAN03G2500' => 'fan', 'FAN04G1310' => 'fan', 'FAN06G1188' => 'fan', 'FAN06G3797' => 'fan', 'FAN08G0840' => 'fan', 'FAN09G2179' => 'fan', 'FAN10G1139' => 'fan', 'FAN13G2200' => 'fan', 'FAN18G1235' => 'fan', 'FAN19G2270' => 'fan', 'FAN21G3042' => 'fan', 'FAN23G0836' => 'fan', 'FAN26G0685' => 'fan', 'FvH4_1g01800' => 'fve', 'FvH4_5g20200' => 'fve', 'FvH4_7g27550' => 'fve', 'Glyma.05G064500' => 'gma', 'Glyma.09G096500' => 'gma', 'Glyma.09G223700' => 'gma', 'Glyma.12G013200' => 'gma', 'Glyma.15G201400' => 'gma', 'Glyma.17G146300' => 'gma', 'Glyma.20G074366' => 'gma', 'Gohir.A03G058900' => 'ghi', 'Gohir.A06G051000' => 'ghi', 'Gohir.A07G041400' => 'ghi', 'Gohir.A12G198500' => 'ghi', 'Gohir.A12G213800' => 'ghi', 'Gohir.D03G107200' => 'ghi', 'Gohir.D06G050100' => 'ghi', 'Gohir.D07G045500' => 'ghi', 'Gohir.D12G201100' => 'ghi', 'Gohir.D12G216400' => 'ghi', 'Gorai.001G048600' => 'gra', 'Gorai.003G113500' => 'gra', 'Gorai.008G216200' => 'gra', 'Gorai.008G231800' => 'gra', 'Gorai.010G057000' => 'gra', 'GSVIVG01002111001' => 'vvi', 'GSVIVG01012880001' => 'vvi', 'GSVIVG01018648001' => 'vvi', 'HanXRQChr07g0205921' => 'han', 'HanXRQChr11g0332821' => 'han', 'HanXRQChr12g0357041' => 'han', 'HanXRQChr14g0461361' => 'han', 'HanXRQChr16g0512601' => 'han', 'Haze_07978' => 'cav', 'Haze_07988' => 'cav', 'Haze_19327' => 'cav', 'Haze_26942' => 'cav', 'Hma1.2p1_0432F.1_g151720' => 'hma', 'Hma1.2p1_1008F.1_g247160' => 'hma', 'Hma1.2p1_3142F.1_g333080' => 'hma', 'HPP92_010440' => 'vpl', 'HPP92_012736' => 'vpl', 'HPP92_025602' => 'vpl', 'HPP92_025642' => 'vpl', 'Hund04597' => 'sun', 'Hund11326' => 'sun', 'Hund13168' => 'sun', 'Hund14498' => 'sun', 'Lalb_Chr00c54g0413701' => 'lal', 'Lalb_Chr01g0000701' => 'lal', 'Lalb_Chr03g0024281' => 'lal', 'Lalb_Chr05g0220961' => 'lal', 'Lalb_Chr08g0233661' => 'lal', 'Lalb_Chr09g0329851' => 'lal', 'Lalb_Chr11g0072981' => 'lal', 'Lj1C980T2' => 'lonja', 'Lj2A227T60' => 'lonja', 'Lj3g0001480' => 'lja', 'Lj4g0025538' => 'lja', 'Lj6g0009460' => 'lja', 'Lj8A275T76' => 'lonja', 'Lj9A707T55' => 'lonja', 'Lsat_1_v5_gn_2_129281' => 'lsa', 'Lsat_1_v5_gn_5_94301' => 'lsa', 'Lsat_1_v5_gn_8_144501' => 'lsa', 'Lsat_1_v5_gn_8_144561' => 'lsa', 'Lsat_1_v5_gn_8_144601' => 'lsa', 'Lsat_1_v5_gn_9_52100' => 'lsa', 'Manes.01G086900' => 'mes', 'Manes.03G138500' => 'mes', 'Manes.06G134900' => 'mes', 'Manes.14G035900' => 'mes', 'Mapoly0049s0055' => 'mpo', 'MBI15_g25662_MAGBIO' => 'mbi', 'MCO03G386' => 'mco', 'MCO12G416' => 'mco', 'MD02G1013700' => 'mdo', 'MD02G1014100' => 'mdo', 'MD04G1051000' => 'mdo', 'MD04G1051200' => 'mdo', 'MD04G1051400' => 'mdo', 'MD06G1048800' => 'mdo', 'MD07G1253900' => 'mdo', 'MD15G1160500' => 'mdo', 'Medtr0004s0650' => 'mtr', 'Medtr2g460810' => 'mtr', 'Medtr4g099450' => 'mtr', 'MELO3C005383.2' => 'cme', 'MELO3C010269.2' => 'cme', 'Migut.A01051' => 'egut', 'Migut.F00474' => 'egut', 'Migut.F01182' => 'egut', 'Migut.J01266' => 'egut', 'MSTRG.12146' => 'ama', 'MSTRG.19623' => 'ama', 'MSTRG.8825' => 'ama', 'Nitab4.5_0000262g0150' => 'nta', 'Nitab4.5_0000262g0160' => 'nta', 'Nitab4.5_0000262g0170' => 'nta', 'Nitab4.5_0000448g0120' => 'nta', 'Nitab4.5_0000506g0120' => 'nta', 'Nitab4.5_0001751g0030' => 'nta', 'Nitab4.5_0002149g0010' => 'nta', 'Nitab4.5_0003456g0070' => 'nta', 'Nitab4.5_0007330g0010' => 'nta', 'Nitab4.5_0008175g0010' => 'nta', 'Nn1g00817' => 'nnu', 'Nn1g01038' => 'nnu', 'Nn3g20257' => 'nnu', 'Nn8g39689' => 'nnu', 'Oeu015327.1' => 'oeu', 'Oeu040210.1' => 'oeu', 'Oeu040793.1' => 'oeu', 'Oeu043268.1' => 'oeu', 'Os02g0652800' => 'osa', 'Os04g0555300' => 'osa', 'Os06g0179900' => 'osa', 'Os08g0156600' => 'osa', 'Peaxi162Scf00108g00220' => 'pax', 'Peaxi162Scf00190g00910' => 'pax', 'Peaxi162Scf00241g00221' => 'pax', 'Peaxi162Scf00304g01311' => 'pax', 'PGR042G3127' => 'pgr', 'PGR042G3347' => 'pgr', 'PGR102G2657' => 'pgr', 'PGR142G1126' => 'pgr', 'PGSC0003DMG400007886' => 'stu', 'PGSC0003DMG400014824' => 'stu', 'PGSC0003DMG400021591' => 'stu', 'PGSC0003DMG401024163' => 'stu', 'PGSC0003DMG402024163' => 'stu', 'Phvul.003G224300' => 'pvu', 'Phvul.009G210000' => 'pvu', 'Phvul.011G016300' => 'pvu', 'Potri.001G124200' => 'ptr', 'Potri.001G152300' => 'ptr', 'Potri.003G082366' => 'ptr', 'Potri.003G109300' => 'ptr', 'Potri.018G115000' => 'ptr', 'Pp3c23_12620' => 'ppa', 'Pp3c24_3410' => 'ppa', 'Pp3c24_3423' => 'ppa', 'PRCOL_00001233' => 'pco', 'PRCOL_00003496' => 'pco', 'PRCOL_00003608' => 'pco', 'PRCOL_00004552' => 'pco', 'Prupe.2G277200' => 'ppe', 'Prupe.3G036200' => 'ppe', 'Prupe.5G059000' => 'ppe', 'Prupe.7G255700' => 'ppe', 'Psat1g023040' => 'psa', 'Psat4g075040' => 'psa', 'Psat7g150760' => 'psa', 'PSO063G7558' => 'pso', 'PSO210G0580' => 'pso', 'PSO210G1353' => 'pso', 'PSO782G1788' => 'pso', 'QL02p091134' => 'qlo', 'QL09p019900' => 'qlo', 'QL12p009333' => 'qlo', 'RcHm_v2.0_Chr1g0374421' => 'rch', 'RcHm_v2.0_Chr2g0086771' => 'rch', 'RcHm_v2.0_Chr7g0205141' => 'rch', 'Rhsim01G0052200' => 'rsi', 'Rhsim07G0118100' => 'rsi', 'Rhsim09G0191400' => 'rsi', 'Sabra01G0095700' => 'sbr', 'Sabra01G0122100' => 'sbr', 'Sabra01G0122200' => 'sbr', 'Sabra03G0075800' => 'sbr', 'Sabra18G0097800' => 'sbr', 'SalBow1G4772' => 'sbo', 'SalBow4G0257' => 'sbo', 'SalBow6G4598' => 'sbo', 'Sc07g0009100' => 'sci', 'Sc18g0000070' => 'sci', 'Sc25g0000070' => 'sci', 'Sed0006247' => 'sed', 'Sed0008653' => 'sed', 'Sed0021433' => 'sed', 'SEGI_00705' => 'sgi', 'SEGI_04493' => 'sgi', 'SEGI_21219' => 'sgi', 'SEGI_29457' => 'sgi', 'SEGI_34383' => 'sgi', 'SGA_v2.0_scaffold104G30219' => 'sas', 'SGA_v2.0_scaffold199G41246' => 'sas', 'SGA_v2.0_scaffold2G01202' => 'sas', 'SGA_v2.0_scaffold45G17061' => 'sas', 'SGA_v2.0_scaffold543G52826' => 'sas', 'SGA_v2.0_scaffold69G23156' => 'sas', 'SHI03286' => 'shi', 'SMO228G0013' => 'smo', 'SMO232G0100' => 'smo', 'SMO356G0579' => 'smo', 'Solyc03g093140.3' => 'sly', 'Solyc04g056713.1' => 'sly', 'Solyc06g034290.3' => 'sly', 'Solyc06g060910.2' => 'sly', 'Solyc07g025090.1' => 'sly', 'Solyc12g010440.3' => 'sly', 'Sopen03g023930' => 'spe', 'Sopen06g010930' => 'spe', 'Sopen06g021060' => 'spe', 'Sopen12g005460' => 'spe', 'Sp1g26450' => 'spa', 'Sp1g26460' => 'spa', 'Sp3g30460' => 'spa', 'Sp5g14460' => 'spa', 'Sp7g16610' => 'spa', 'Sp7g23240' => 'spa', 'TAR375G0080' => 'tar', 'TAR625G0885' => 'tar', 'TAR629G1071' => 'tar', 'TAR636G1729' => 'tar', 'TAR636G2147' => 'tar', 'TAR636G3385' => 'tar', 'THA.LOC104798357' => 'tha', 'THA.LOC104808381' => 'tha', 'THA.LOC104808939' => 'tha', 'THA.LOC104821412' => 'tha', 'THA.LOC104825063' => 'tha', 'Thecc.03G156000' => 'tca', 'Thecc.03G243200' => 'tca', 'Thecc.09G140200' => 'tca', 'Thhalv10007400m.g' => 'esa', 'Thhalv10010285m.g' => 'esa', 'Thhalv10022662m.g' => 'esa', 'Thhalv10024874m.g' => 'esa', 'Thhalv10024964m.g' => 'esa', 'TPR.G20247' => 'tpr', 'TPR.G25766' => 'tpr', 'TPR.G31558' => 'tpr', 'TWI23G0588' => 'twi', 'TWI39G0666' => 'twi', 'TWI60G0920' => 'twi', 'TWI63G1801' => 'twi', 'unitig_21.g20315' => 'ugi', 'unitig_21.g20316' => 'ugi', 'unitig_744.g24477' => 'ugi', 'unitig_747.g21809' => 'ugi', 'unitig_92.g28269' => 'ugi', 'vmacro00042' => 'vma', 'vmacro09905' => 'vma', 'vmacro21887' => 'vma', 'VMungo0251G2163' => 'vmu', 'VMungo1127G0431' => 'vmu', 'VMungo1309G3061' => 'vmu', 'Zm00001eb172590' => 'zma', 'Zm00001eb249190' => 'zma', 'Zm00001eb268090' => 'zma', 'Zm00001eb415960' => 'zma', 'Zm00001eb429440' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001352', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001352' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001352', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '464', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001352' ) ), 'genes' => array( 'A01p09630' => 'bna', 'A01p16490' => 'bna', 'A03p50530' => 'bna', 'A04p28730' => 'bna', 'A06p20250' => 'bna', 'A07p04010' => 'bna', 'A08p11070' => 'bna', 'A08p13220' => 'bna', 'A09p19260' => 'bna', 'A10p29150' => 'bna', 'Aa31LG3G10500' => 'aar', 'Aa31LG4G16220' => 'aar', 'Aa31LG6G11800' => 'aar', 'Aa31LG6G290' => 'aar', 'Aa31sc16G250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1564' => 'aag', 'Actinidia04241' => 'ach', 'Actinidia10856' => 'ach', 'Actinidia21915' => 'ach', 'Actinidia24698' => 'ach', 'Actinidia25902' => 'ach', 'Actinidia31500' => 'ach', 'Actinidia31783' => 'ach', 'Ah.07g207770' => 'amhyb', 'Ah.09g223930' => 'amhyb', 'Ah.12g054070' => 'amhyb', 'AL1G44600' => 'aly', 'AL3G45150' => 'aly', 'AL5G26640' => 'aly', 'AL7G27930' => 'aly', 'AL7G37070' => 'aly', 'Aqoxy3G02686' => 'aox', 'Aqoxy409s001' => 'aox', 'Aqoxy5G03902' => 'aox', 'Aqoxy5G03903' => 'aox', 'Aqoxy7G00750' => 'aox', 'Aqoxy7G03547' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5QUI8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8TQ98L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG4CQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8M0UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK9E2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIR7X4' => 'arhy', 'AT1G30560' => 'ath', 'AT2G13100' => 'ath', 'AT3G47420' => 'ath', 'AT4G17550' => 'ath', 'AT4G25220' => 'ath', 'ATR0317G121' => 'atr', 'ATR0665G665' => 'atr', 'ATR0767G126' => 'atr', 'Atru.chr1.725' => 'acertr', 'Atru.chr2.2273' => 'acertr', 'Atru.chr3.2577' => 'acertr', 'Atru.chr7.267' => 'acertr', 'Atru.chr9.1229' => 'acertr', 'AUR62002203' => 'cqu', 'AUR62007151' => 'cqu', 'AUR62011248' => 'cqu', 'AUR62015499' => 'cqu', 'AUR62018860' => 'cqu', 'AUR62041456' => 'cqu', 'BcaB01g00927' => 'bca', 'BcaB01g02682' => 'bca', 'BcaB03g16460' => 'bca', 'BcaB04g18210' => 'bca', 'BcaB04g18427' => 'bca', 'BcaC01g01827' => 'bca', 'BcaC03g14077' => 'bca', 'BcaC06g33559' => 'bca', 'BcaC06g36222' => 'bca', 'BcaC07g37811' => 'bca', 'BcaC07g38087' => 'bca', 'BcaC09g50796' => 'bca', 'BcaC09g51631' => 'bca', 'BcaNung00081' => 'bca', 'BcaNung03456' => 'bca', 'BcaNung06353' => 'bca', 'BolC1t01086H' => 'bol', 'BolC1t01996H' => 'bol', 'BolC3t19446H' => 'bol', 'BolC7t41053H' => 'bol', 'BolC7t45393H' => 'bol', 'BolC8t48200H' => 'bol', 'BolC8t48501H' => 'bol', 'BolC9t57242H' => 'bol', 'BolC9t57243H' => 'bol', 'BraA01t00905Z' => 'bra', 'BraA01t01603Z' => 'bra', 'BraA02t06003Z' => 'bra', 'BraA02t08062Z' => 'bra', 'BraA03t14142Z' => 'bra', 'BraA06t25107Z' => 'bra', 'BraA07t28192Z' => 'bra', 'BraA08t33101Z' => 'bra', 'BraA08t33305Z' => 'bra', 'C01p11200' => 'bna', 'C01p20700' => 'bna', 'C03p71520' => 'bna', 'C04p26810' => 'bna', 'C04p53500' => 'bna', 'C07p06370' => 'bna', 'C07p48850' => 'bna', 'C07p52870' => 'bna', 'CAN.G48.20' => 'can', 'CAN.G49.1' => 'can', 'CAN.G551.20' => 'can', 'CAN.G62.3' => 'can', 'CANSAT11G2569' => 'cansat', 'CANSAT21G0939' => 'cansat', 'CANSAT56G3821' => 'cansat', 'CARHR030010' => 'chi', 'CARHR105110' => 'chi', 'CARHR156060' => 'chi', 'CARHR224250' => 'chi', 'CARHR232620' => 'chi', 'Carub.0001s2882' => 'cru', 'Carub.0003s2785' => 'cru', 'Carub.0005s1351' => 'cru', 'Carub.0007s1581' => 'cru', 'Carub.0007s2384' => 'cru', 'Ca_17004_v3' => 'car', 'Ca_19622_v3' => 'car', 'Ca_22005_v3' => 'car', 'CBR_g25854' => 'cbr', 'CBR_g6311' => 'cbr', 'Cc02_g04240' => 'ccan', 'Cc06_g07490' => 'ccan', 'Cc08_g11500' => 'ccan', 'CDE02G2828' => 'cde', 'CDE04G1824' => 'cde', 'CDE06G1252' => 'cde', 'CDE07G1279' => 'cde', 'CDE09G0609' => 'cde', 'CDE11G0215' => 'cde', 'CDE11G0340' => 'cde', 'CDE11G0482' => 'cde', 'CDE12G0142' => 'cde', 'CDE12G0167' => 'cde', 'CDE12G0803' => 'cde', 'Cfa008169' => 'cfa', 'Cfa020901' => 'cfa', 'Ciclev10004728m.g' => 'ccl', 'Ciclev10008087m.g' => 'ccl', 'Ciclev10019641m.g' => 'ccl', 'CiPaw.03G093400' => 'cil', 'CiPaw.04G060000' => 'cil', 'CiPaw.12G047600' => 'cil', 'CiPaw.16G118200' => 'cil', 'ClCG01G005470' => 'cla', 'ClCG06G011970' => 'cla', 'COL.COLO4_14124' => 'col', 'COL.COLO4_21684' => 'col', 'COL.COLO4_24117' => 'col', 'Cpa.g.sc3.321' => 'cpa', 'Cpa.g.sc46.82' => 'cpa', 'Cpa.g.sc89.8' => 'cpa', 'Cre12.g503000' => 'cre', 'CsaV3_1G028430' => 'csa', 'CsaV3_5G005700' => 'csa', 'CSS0007503' => 'camsi', 'CSS0007899' => 'camsi', 'CSS0016319' => 'camsi', 'CSS0022696' => 'camsi', 'CSS0022717' => 'camsi', 'CSS0033927' => 'camsi', 'CSS0050500' => 'camsi', 'DCAR_000651' => 'dca', 'DCAR_004594' => 'dca', 'DCAR_008871' => 'dca', 'DCAR_018108' => 'dca', 'DCAR_020190' => 'dca', 'Dinv06557' => 'din', 'Dinv22948' => 'din', 'Dinv28570' => 'din', 'Dinv28862' => 'din', 'Dinv42921' => 'din', 'Dinv43179' => 'din', 'Duzib068G0426' => 'dzi', 'Duzib068G1196' => 'dzi', 'Duzib084G1015' => 'dzi', 'Duzib150G0190' => 'dzi', 'Duzib187G0384' => 'dzi', 'Duzib205G0734' => 'dzi', 'Duzib205G1196' => 'dzi', 'ECA232G0430' => 'eca', 'ECA233G5134' => 'eca', 'ECA234G1044' => 'eca', 'ECA238G2838' => 'eca', 'EL10Ac3g05844' => 'bvu', 'EL10Ac5g12289' => 'bvu', 'EL10Ac8g18809' => 'bvu', 'Eucgr.A02892' => 'egr', 'Eucgr.C04092' => 'egr', 'Eucgr.E00368' => 'egr', 'Eucgr.K00158' => 'egr', 'Eucgr.K00159' => 'egr', 'FAN01G2529' => 'fan', 'FAN03G2500' => 'fan', 'FAN04G1310' => 'fan', 'FAN06G1188' => 'fan', 'FAN06G3797' => 'fan', 'FAN08G0840' => 'fan', 'FAN09G2179' => 'fan', 'FAN10G1139' => 'fan', 'FAN13G2200' => 'fan', 'FAN18G1235' => 'fan', 'FAN19G2270' => 'fan', 'FAN21G3042' => 'fan', 'FAN23G0836' => 'fan', 'FAN26G0685' => 'fan', 'FvH4_1g01800' => 'fve', 'FvH4_5g20200' => 'fve', 'FvH4_7g27550' => 'fve', 'Glyma.05G064500' => 'gma', 'Glyma.09G096500' => 'gma', 'Glyma.09G223700' => 'gma', 'Glyma.12G013200' => 'gma', 'Glyma.15G201400' => 'gma', 'Glyma.17G146300' => 'gma', 'Glyma.20G074366' => 'gma', 'Gohir.A03G058900' => 'ghi', 'Gohir.A06G051000' => 'ghi', 'Gohir.A07G041400' => 'ghi', 'Gohir.A12G198500' => 'ghi', 'Gohir.A12G213800' => 'ghi', 'Gohir.D03G107200' => 'ghi', 'Gohir.D06G050100' => 'ghi', 'Gohir.D07G045500' => 'ghi', 'Gohir.D12G201100' => 'ghi', 'Gohir.D12G216400' => 'ghi', 'Gorai.001G048600' => 'gra', 'Gorai.003G113500' => 'gra', 'Gorai.008G216200' => 'gra', 'Gorai.008G231800' => 'gra', 'Gorai.010G057000' => 'gra', 'GSVIVG01002111001' => 'vvi', 'GSVIVG01012880001' => 'vvi', 'GSVIVG01018648001' => 'vvi', 'HanXRQChr07g0205921' => 'han', 'HanXRQChr11g0332821' => 'han', 'HanXRQChr12g0357041' => 'han', 'HanXRQChr14g0461361' => 'han', 'HanXRQChr16g0512601' => 'han', 'Haze_07978' => 'cav', 'Haze_07988' => 'cav', 'Haze_19327' => 'cav', 'Haze_26942' => 'cav', 'Hma1.2p1_0432F.1_g151720' => 'hma', 'Hma1.2p1_1008F.1_g247160' => 'hma', 'Hma1.2p1_3142F.1_g333080' => 'hma', 'HPP92_010440' => 'vpl', 'HPP92_012736' => 'vpl', 'HPP92_025602' => 'vpl', 'HPP92_025642' => 'vpl', 'Hund04597' => 'sun', 'Hund11326' => 'sun', 'Hund13168' => 'sun', 'Hund14498' => 'sun', 'Lalb_Chr00c54g0413701' => 'lal', 'Lalb_Chr01g0000701' => 'lal', 'Lalb_Chr03g0024281' => 'lal', 'Lalb_Chr05g0220961' => 'lal', 'Lalb_Chr08g0233661' => 'lal', 'Lalb_Chr09g0329851' => 'lal', 'Lalb_Chr11g0072981' => 'lal', 'Lj1C980T2' => 'lonja', 'Lj2A227T60' => 'lonja', 'Lj3g0001480' => 'lja', 'Lj4g0025538' => 'lja', 'Lj6g0009460' => 'lja', 'Lj8A275T76' => 'lonja', 'Lj9A707T55' => 'lonja', 'Lsat_1_v5_gn_2_129281' => 'lsa', 'Lsat_1_v5_gn_5_94301' => 'lsa', 'Lsat_1_v5_gn_8_144501' => 'lsa', 'Lsat_1_v5_gn_8_144561' => 'lsa', 'Lsat_1_v5_gn_8_144601' => 'lsa', 'Lsat_1_v5_gn_9_52100' => 'lsa', 'Manes.01G086900' => 'mes', 'Manes.03G138500' => 'mes', 'Manes.06G134900' => 'mes', 'Manes.14G035900' => 'mes', 'Mapoly0049s0055' => 'mpo', 'MBI15_g25662_MAGBIO' => 'mbi', 'MCO03G386' => 'mco', 'MCO12G416' => 'mco', 'MD02G1013700' => 'mdo', 'MD02G1014100' => 'mdo', 'MD04G1051000' => 'mdo', 'MD04G1051200' => 'mdo', 'MD04G1051400' => 'mdo', 'MD06G1048800' => 'mdo', 'MD07G1253900' => 'mdo', 'MD15G1160500' => 'mdo', 'Medtr0004s0650' => 'mtr', 'Medtr2g460810' => 'mtr', 'Medtr4g099450' => 'mtr', 'MELO3C005383.2' => 'cme', 'MELO3C010269.2' => 'cme', 'Migut.A01051' => 'egut', 'Migut.F00474' => 'egut', 'Migut.F01182' => 'egut', 'Migut.J01266' => 'egut', 'MSTRG.12146' => 'ama', 'MSTRG.19623' => 'ama', 'MSTRG.8825' => 'ama', 'Nitab4.5_0000262g0150' => 'nta', 'Nitab4.5_0000262g0160' => 'nta', 'Nitab4.5_0000262g0170' => 'nta', 'Nitab4.5_0000448g0120' => 'nta', 'Nitab4.5_0000506g0120' => 'nta', 'Nitab4.5_0001751g0030' => 'nta', 'Nitab4.5_0002149g0010' => 'nta', 'Nitab4.5_0003456g0070' => 'nta', 'Nitab4.5_0007330g0010' => 'nta', 'Nitab4.5_0008175g0010' => 'nta', 'Nn1g00817' => 'nnu', 'Nn1g01038' => 'nnu', 'Nn3g20257' => 'nnu', 'Nn8g39689' => 'nnu', 'Oeu015327.1' => 'oeu', 'Oeu040210.1' => 'oeu', 'Oeu040793.1' => 'oeu', 'Oeu043268.1' => 'oeu', 'Os02g0652800' => 'osa', 'Os04g0555300' => 'osa', 'Os06g0179900' => 'osa', 'Os08g0156600' => 'osa', 'Peaxi162Scf00108g00220' => 'pax', 'Peaxi162Scf00190g00910' => 'pax', 'Peaxi162Scf00241g00221' => 'pax', 'Peaxi162Scf00304g01311' => 'pax', 'PGR042G3127' => 'pgr', 'PGR042G3347' => 'pgr', 'PGR102G2657' => 'pgr', 'PGR142G1126' => 'pgr', 'PGSC0003DMG400007886' => 'stu', 'PGSC0003DMG400014824' => 'stu', 'PGSC0003DMG400021591' => 'stu', 'PGSC0003DMG401024163' => 'stu', 'PGSC0003DMG402024163' => 'stu', 'Phvul.003G224300' => 'pvu', 'Phvul.009G210000' => 'pvu', 'Phvul.011G016300' => 'pvu', 'Potri.001G124200' => 'ptr', 'Potri.001G152300' => 'ptr', 'Potri.003G082366' => 'ptr', 'Potri.003G109300' => 'ptr', 'Potri.018G115000' => 'ptr', 'Pp3c23_12620' => 'ppa', 'Pp3c24_3410' => 'ppa', 'Pp3c24_3423' => 'ppa', 'PRCOL_00001233' => 'pco', 'PRCOL_00003496' => 'pco', 'PRCOL_00003608' => 'pco', 'PRCOL_00004552' => 'pco', 'Prupe.2G277200' => 'ppe', 'Prupe.3G036200' => 'ppe', 'Prupe.5G059000' => 'ppe', 'Prupe.7G255700' => 'ppe', 'Psat1g023040' => 'psa', 'Psat4g075040' => 'psa', 'Psat7g150760' => 'psa', 'PSO063G7558' => 'pso', 'PSO210G0580' => 'pso', 'PSO210G1353' => 'pso', 'PSO782G1788' => 'pso', 'QL02p091134' => 'qlo', 'QL09p019900' => 'qlo', 'QL12p009333' => 'qlo', 'RcHm_v2.0_Chr1g0374421' => 'rch', 'RcHm_v2.0_Chr2g0086771' => 'rch', 'RcHm_v2.0_Chr7g0205141' => 'rch', 'Rhsim01G0052200' => 'rsi', 'Rhsim07G0118100' => 'rsi', 'Rhsim09G0191400' => 'rsi', 'Sabra01G0095700' => 'sbr', 'Sabra01G0122100' => 'sbr', 'Sabra01G0122200' => 'sbr', 'Sabra03G0075800' => 'sbr', 'Sabra18G0097800' => 'sbr', 'SalBow1G4772' => 'sbo', 'SalBow4G0257' => 'sbo', 'SalBow6G4598' => 'sbo', 'Sc07g0009100' => 'sci', 'Sc18g0000070' => 'sci', 'Sc25g0000070' => 'sci', 'Sed0006247' => 'sed', 'Sed0008653' => 'sed', 'Sed0021433' => 'sed', 'SEGI_00705' => 'sgi', 'SEGI_04493' => 'sgi', 'SEGI_21219' => 'sgi', 'SEGI_29457' => 'sgi', 'SEGI_34383' => 'sgi', 'SGA_v2.0_scaffold104G30219' => 'sas', 'SGA_v2.0_scaffold199G41246' => 'sas', 'SGA_v2.0_scaffold2G01202' => 'sas', 'SGA_v2.0_scaffold45G17061' => 'sas', 'SGA_v2.0_scaffold543G52826' => 'sas', 'SGA_v2.0_scaffold69G23156' => 'sas', 'SHI03286' => 'shi', 'SMO228G0013' => 'smo', 'SMO232G0100' => 'smo', 'SMO356G0579' => 'smo', 'Solyc03g093140.3' => 'sly', 'Solyc04g056713.1' => 'sly', 'Solyc06g034290.3' => 'sly', 'Solyc06g060910.2' => 'sly', 'Solyc07g025090.1' => 'sly', 'Solyc12g010440.3' => 'sly', 'Sopen03g023930' => 'spe', 'Sopen06g010930' => 'spe', 'Sopen06g021060' => 'spe', 'Sopen12g005460' => 'spe', 'Sp1g26450' => 'spa', 'Sp1g26460' => 'spa', 'Sp3g30460' => 'spa', 'Sp5g14460' => 'spa', 'Sp7g16610' => 'spa', 'Sp7g23240' => 'spa', 'TAR375G0080' => 'tar', 'TAR625G0885' => 'tar', 'TAR629G1071' => 'tar', 'TAR636G1729' => 'tar', 'TAR636G2147' => 'tar', 'TAR636G3385' => 'tar', 'THA.LOC104798357' => 'tha', 'THA.LOC104808381' => 'tha', 'THA.LOC104808939' => 'tha', 'THA.LOC104821412' => 'tha', 'THA.LOC104825063' => 'tha', 'Thecc.03G156000' => 'tca', 'Thecc.03G243200' => 'tca', 'Thecc.09G140200' => 'tca', 'Thhalv10007400m.g' => 'esa', 'Thhalv10010285m.g' => 'esa', 'Thhalv10022662m.g' => 'esa', 'Thhalv10024874m.g' => 'esa', 'Thhalv10024964m.g' => 'esa', 'TPR.G20247' => 'tpr', 'TPR.G25766' => 'tpr', 'TPR.G31558' => 'tpr', 'TWI23G0588' => 'twi', 'TWI39G0666' => 'twi', 'TWI60G0920' => 'twi', 'TWI63G1801' => 'twi', 'unitig_21.g20315' => 'ugi', 'unitig_21.g20316' => 'ugi', 'unitig_744.g24477' => 'ugi', 'unitig_747.g21809' => 'ugi', 'unitig_92.g28269' => 'ugi', 'vmacro00042' => 'vma', 'vmacro09905' => 'vma', 'vmacro21887' => 'vma', 'VMungo0251G2163' => 'vmu', 'VMungo1127G0431' => 'vmu', 'VMungo1309G3061' => 'vmu', 'Zm00001eb172590' => 'zma', 'Zm00001eb249190' => 'zma', 'Zm00001eb268090' => 'zma', 'Zm00001eb415960' => 'zma', 'Zm00001eb429440' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001352' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001352' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001352' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001352' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001352', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '464', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p09630' => 'bna', 'A01p16490' => 'bna', 'A03p50530' => 'bna', 'A04p28730' => 'bna', 'A06p20250' => 'bna', 'A07p04010' => 'bna', 'A08p11070' => 'bna', 'A08p13220' => 'bna', 'A09p19260' => 'bna', 'A10p29150' => 'bna', 'Aa31LG3G10500' => 'aar', 'Aa31LG4G16220' => 'aar', 'Aa31LG6G11800' => 'aar', 'Aa31LG6G290' => 'aar', 'Aa31sc16G250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1564' => 'aag', 'Actinidia04241' => 'ach', 'Actinidia10856' => 'ach', 'Actinidia21915' => 'ach', 'Actinidia24698' => 'ach', 'Actinidia25902' => 'ach', 'Actinidia31500' => 'ach', 'Actinidia31783' => 'ach', 'Ah.07g207770' => 'amhyb', 'Ah.09g223930' => 'amhyb', 'Ah.12g054070' => 'amhyb', 'AL1G44600' => 'aly', 'AL3G45150' => 'aly', 'AL5G26640' => 'aly', 'AL7G27930' => 'aly', 'AL7G37070' => 'aly', 'Aqoxy3G02686' => 'aox', 'Aqoxy409s001' => 'aox', 'Aqoxy5G03902' => 'aox', 'Aqoxy5G03903' => 'aox', 'Aqoxy7G00750' => 'aox', 'Aqoxy7G03547' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5QUI8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8TQ98L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG4CQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8M0UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK9E2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIR7X4' => 'arhy', 'AT1G30560' => 'ath', 'AT2G13100' => 'ath', 'AT3G47420' => 'ath', 'AT4G17550' => 'ath', 'AT4G25220' => 'ath', 'ATR0317G121' => 'atr', 'ATR0665G665' => 'atr', 'ATR0767G126' => 'atr', 'Atru.chr1.725' => 'acertr', 'Atru.chr2.2273' => 'acertr', 'Atru.chr3.2577' => 'acertr', 'Atru.chr7.267' => 'acertr', 'Atru.chr9.1229' => 'acertr', 'AUR62002203' => 'cqu', 'AUR62007151' => 'cqu', 'AUR62011248' => 'cqu', 'AUR62015499' => 'cqu', 'AUR62018860' => 'cqu', 'AUR62041456' => 'cqu', 'BcaB01g00927' => 'bca', 'BcaB01g02682' => 'bca', 'BcaB03g16460' => 'bca', 'BcaB04g18210' => 'bca', 'BcaB04g18427' => 'bca', 'BcaC01g01827' => 'bca', 'BcaC03g14077' => 'bca', 'BcaC06g33559' => 'bca', 'BcaC06g36222' => 'bca', 'BcaC07g37811' => 'bca', 'BcaC07g38087' => 'bca', 'BcaC09g50796' => 'bca', 'BcaC09g51631' => 'bca', 'BcaNung00081' => 'bca', 'BcaNung03456' => 'bca', 'BcaNung06353' => 'bca', 'BolC1t01086H' => 'bol', 'BolC1t01996H' => 'bol', 'BolC3t19446H' => 'bol', 'BolC7t41053H' => 'bol', 'BolC7t45393H' => 'bol', 'BolC8t48200H' => 'bol', 'BolC8t48501H' => 'bol', 'BolC9t57242H' => 'bol', 'BolC9t57243H' => 'bol', 'BraA01t00905Z' => 'bra', 'BraA01t01603Z' => 'bra', 'BraA02t06003Z' => 'bra', 'BraA02t08062Z' => 'bra', 'BraA03t14142Z' => 'bra', 'BraA06t25107Z' => 'bra', 'BraA07t28192Z' => 'bra', 'BraA08t33101Z' => 'bra', 'BraA08t33305Z' => 'bra', 'C01p11200' => 'bna', 'C01p20700' => 'bna', 'C03p71520' => 'bna', 'C04p26810' => 'bna', 'C04p53500' => 'bna', 'C07p06370' => 'bna', 'C07p48850' => 'bna', 'C07p52870' => 'bna', 'CAN.G48.20' => 'can', 'CAN.G49.1' => 'can', 'CAN.G551.20' => 'can', 'CAN.G62.3' => 'can', 'CANSAT11G2569' => 'cansat', 'CANSAT21G0939' => 'cansat', 'CANSAT56G3821' => 'cansat', 'CARHR030010' => 'chi', 'CARHR105110' => 'chi', 'CARHR156060' => 'chi', 'CARHR224250' => 'chi', 'CARHR232620' => 'chi', 'Carub.0001s2882' => 'cru', 'Carub.0003s2785' => 'cru', 'Carub.0005s1351' => 'cru', 'Carub.0007s1581' => 'cru', 'Carub.0007s2384' => 'cru', 'Ca_17004_v3' => 'car', 'Ca_19622_v3' => 'car', 'Ca_22005_v3' => 'car', 'CBR_g25854' => 'cbr', 'CBR_g6311' => 'cbr', 'Cc02_g04240' => 'ccan', 'Cc06_g07490' => 'ccan', 'Cc08_g11500' => 'ccan', 'CDE02G2828' => 'cde', 'CDE04G1824' => 'cde', 'CDE06G1252' => 'cde', 'CDE07G1279' => 'cde', 'CDE09G0609' => 'cde', 'CDE11G0215' => 'cde', 'CDE11G0340' => 'cde', 'CDE11G0482' => 'cde', 'CDE12G0142' => 'cde', 'CDE12G0167' => 'cde', 'CDE12G0803' => 'cde', 'Cfa008169' => 'cfa', 'Cfa020901' => 'cfa', 'Ciclev10004728m.g' => 'ccl', 'Ciclev10008087m.g' => 'ccl', 'Ciclev10019641m.g' => 'ccl', 'CiPaw.03G093400' => 'cil', 'CiPaw.04G060000' => 'cil', 'CiPaw.12G047600' => 'cil', 'CiPaw.16G118200' => 'cil', 'ClCG01G005470' => 'cla', 'ClCG06G011970' => 'cla', 'COL.COLO4_14124' => 'col', 'COL.COLO4_21684' => 'col', 'COL.COLO4_24117' => 'col', 'Cpa.g.sc3.321' => 'cpa', 'Cpa.g.sc46.82' => 'cpa', 'Cpa.g.sc89.8' => 'cpa', 'Cre12.g503000' => 'cre', 'CsaV3_1G028430' => 'csa', 'CsaV3_5G005700' => 'csa', 'CSS0007503' => 'camsi', 'CSS0007899' => 'camsi', 'CSS0016319' => 'camsi', 'CSS0022696' => 'camsi', 'CSS0022717' => 'camsi', 'CSS0033927' => 'camsi', 'CSS0050500' => 'camsi', 'DCAR_000651' => 'dca', 'DCAR_004594' => 'dca', 'DCAR_008871' => 'dca', 'DCAR_018108' => 'dca', 'DCAR_020190' => 'dca', 'Dinv06557' => 'din', 'Dinv22948' => 'din', 'Dinv28570' => 'din', 'Dinv28862' => 'din', 'Dinv42921' => 'din', 'Dinv43179' => 'din', 'Duzib068G0426' => 'dzi', 'Duzib068G1196' => 'dzi', 'Duzib084G1015' => 'dzi', 'Duzib150G0190' => 'dzi', 'Duzib187G0384' => 'dzi', 'Duzib205G0734' => 'dzi', 'Duzib205G1196' => 'dzi', 'ECA232G0430' => 'eca', 'ECA233G5134' => 'eca', 'ECA234G1044' => 'eca', 'ECA238G2838' => 'eca', 'EL10Ac3g05844' => 'bvu', 'EL10Ac5g12289' => 'bvu', 'EL10Ac8g18809' => 'bvu', 'Eucgr.A02892' => 'egr', 'Eucgr.C04092' => 'egr', 'Eucgr.E00368' => 'egr', 'Eucgr.K00158' => 'egr', 'Eucgr.K00159' => 'egr', 'FAN01G2529' => 'fan', 'FAN03G2500' => 'fan', 'FAN04G1310' => 'fan', 'FAN06G1188' => 'fan', 'FAN06G3797' => 'fan', 'FAN08G0840' => 'fan', 'FAN09G2179' => 'fan', 'FAN10G1139' => 'fan', 'FAN13G2200' => 'fan', 'FAN18G1235' => 'fan', 'FAN19G2270' => 'fan', 'FAN21G3042' => 'fan', 'FAN23G0836' => 'fan', 'FAN26G0685' => 'fan', 'FvH4_1g01800' => 'fve', 'FvH4_5g20200' => 'fve', 'FvH4_7g27550' => 'fve', 'Glyma.05G064500' => 'gma', 'Glyma.09G096500' => 'gma', 'Glyma.09G223700' => 'gma', 'Glyma.12G013200' => 'gma', 'Glyma.15G201400' => 'gma', 'Glyma.17G146300' => 'gma', 'Glyma.20G074366' => 'gma', 'Gohir.A03G058900' => 'ghi', 'Gohir.A06G051000' => 'ghi', 'Gohir.A07G041400' => 'ghi', 'Gohir.A12G198500' => 'ghi', 'Gohir.A12G213800' => 'ghi', 'Gohir.D03G107200' => 'ghi', 'Gohir.D06G050100' => 'ghi', 'Gohir.D07G045500' => 'ghi', 'Gohir.D12G201100' => 'ghi', 'Gohir.D12G216400' => 'ghi', 'Gorai.001G048600' => 'gra', 'Gorai.003G113500' => 'gra', 'Gorai.008G216200' => 'gra', 'Gorai.008G231800' => 'gra', 'Gorai.010G057000' => 'gra', 'GSVIVG01002111001' => 'vvi', 'GSVIVG01012880001' => 'vvi', 'GSVIVG01018648001' => 'vvi', 'HanXRQChr07g0205921' => 'han', 'HanXRQChr11g0332821' => 'han', 'HanXRQChr12g0357041' => 'han', 'HanXRQChr14g0461361' => 'han', 'HanXRQChr16g0512601' => 'han', 'Haze_07978' => 'cav', 'Haze_07988' => 'cav', 'Haze_19327' => 'cav', 'Haze_26942' => 'cav', 'Hma1.2p1_0432F.1_g151720' => 'hma', 'Hma1.2p1_1008F.1_g247160' => 'hma', 'Hma1.2p1_3142F.1_g333080' => 'hma', 'HPP92_010440' => 'vpl', 'HPP92_012736' => 'vpl', 'HPP92_025602' => 'vpl', 'HPP92_025642' => 'vpl', 'Hund04597' => 'sun', 'Hund11326' => 'sun', 'Hund13168' => 'sun', 'Hund14498' => 'sun', 'Lalb_Chr00c54g0413701' => 'lal', 'Lalb_Chr01g0000701' => 'lal', 'Lalb_Chr03g0024281' => 'lal', 'Lalb_Chr05g0220961' => 'lal', 'Lalb_Chr08g0233661' => 'lal', 'Lalb_Chr09g0329851' => 'lal', 'Lalb_Chr11g0072981' => 'lal', 'Lj1C980T2' => 'lonja', 'Lj2A227T60' => 'lonja', 'Lj3g0001480' => 'lja', 'Lj4g0025538' => 'lja', 'Lj6g0009460' => 'lja', 'Lj8A275T76' => 'lonja', 'Lj9A707T55' => 'lonja', 'Lsat_1_v5_gn_2_129281' => 'lsa', 'Lsat_1_v5_gn_5_94301' => 'lsa', 'Lsat_1_v5_gn_8_144501' => 'lsa', 'Lsat_1_v5_gn_8_144561' => 'lsa', 'Lsat_1_v5_gn_8_144601' => 'lsa', 'Lsat_1_v5_gn_9_52100' => 'lsa', 'Manes.01G086900' => 'mes', 'Manes.03G138500' => 'mes', 'Manes.06G134900' => 'mes', 'Manes.14G035900' => 'mes', 'Mapoly0049s0055' => 'mpo', 'MBI15_g25662_MAGBIO' => 'mbi', 'MCO03G386' => 'mco', 'MCO12G416' => 'mco', 'MD02G1013700' => 'mdo', 'MD02G1014100' => 'mdo', 'MD04G1051000' => 'mdo', 'MD04G1051200' => 'mdo', 'MD04G1051400' => 'mdo', 'MD06G1048800' => 'mdo', 'MD07G1253900' => 'mdo', 'MD15G1160500' => 'mdo', 'Medtr0004s0650' => 'mtr', 'Medtr2g460810' => 'mtr', 'Medtr4g099450' => 'mtr', 'MELO3C005383.2' => 'cme', 'MELO3C010269.2' => 'cme', 'Migut.A01051' => 'egut', 'Migut.F00474' => 'egut', 'Migut.F01182' => 'egut', 'Migut.J01266' => 'egut', 'MSTRG.12146' => 'ama', 'MSTRG.19623' => 'ama', 'MSTRG.8825' => 'ama', 'Nitab4.5_0000262g0150' => 'nta', 'Nitab4.5_0000262g0160' => 'nta', 'Nitab4.5_0000262g0170' => 'nta', 'Nitab4.5_0000448g0120' => 'nta', 'Nitab4.5_0000506g0120' => 'nta', 'Nitab4.5_0001751g0030' => 'nta', 'Nitab4.5_0002149g0010' => 'nta', 'Nitab4.5_0003456g0070' => 'nta', 'Nitab4.5_0007330g0010' => 'nta', 'Nitab4.5_0008175g0010' => 'nta', 'Nn1g00817' => 'nnu', 'Nn1g01038' => 'nnu', 'Nn3g20257' => 'nnu', 'Nn8g39689' => 'nnu', 'Oeu015327.1' => 'oeu', 'Oeu040210.1' => 'oeu', 'Oeu040793.1' => 'oeu', 'Oeu043268.1' => 'oeu', 'Os02g0652800' => 'osa', 'Os04g0555300' => 'osa', 'Os06g0179900' => 'osa', 'Os08g0156600' => 'osa', 'Peaxi162Scf00108g00220' => 'pax', 'Peaxi162Scf00190g00910' => 'pax', 'Peaxi162Scf00241g00221' => 'pax', 'Peaxi162Scf00304g01311' => 'pax', 'PGR042G3127' => 'pgr', 'PGR042G3347' => 'pgr', 'PGR102G2657' => 'pgr', 'PGR142G1126' => 'pgr', 'PGSC0003DMG400007886' => 'stu', 'PGSC0003DMG400014824' => 'stu', 'PGSC0003DMG400021591' => 'stu', 'PGSC0003DMG401024163' => 'stu', 'PGSC0003DMG402024163' => 'stu', 'Phvul.003G224300' => 'pvu', 'Phvul.009G210000' => 'pvu', 'Phvul.011G016300' => 'pvu', 'Potri.001G124200' => 'ptr', 'Potri.001G152300' => 'ptr', 'Potri.003G082366' => 'ptr', 'Potri.003G109300' => 'ptr', 'Potri.018G115000' => 'ptr', 'Pp3c23_12620' => 'ppa', 'Pp3c24_3410' => 'ppa', 'Pp3c24_3423' => 'ppa', 'PRCOL_00001233' => 'pco', 'PRCOL_00003496' => 'pco', 'PRCOL_00003608' => 'pco', 'PRCOL_00004552' => 'pco', 'Prupe.2G277200' => 'ppe', 'Prupe.3G036200' => 'ppe', 'Prupe.5G059000' => 'ppe', 'Prupe.7G255700' => 'ppe', 'Psat1g023040' => 'psa', 'Psat4g075040' => 'psa', 'Psat7g150760' => 'psa', 'PSO063G7558' => 'pso', 'PSO210G0580' => 'pso', 'PSO210G1353' => 'pso', 'PSO782G1788' => 'pso', 'QL02p091134' => 'qlo', 'QL09p019900' => 'qlo', 'QL12p009333' => 'qlo', 'RcHm_v2.0_Chr1g0374421' => 'rch', 'RcHm_v2.0_Chr2g0086771' => 'rch', 'RcHm_v2.0_Chr7g0205141' => 'rch', 'Rhsim01G0052200' => 'rsi', 'Rhsim07G0118100' => 'rsi', 'Rhsim09G0191400' => 'rsi', 'Sabra01G0095700' => 'sbr', 'Sabra01G0122100' => 'sbr', 'Sabra01G0122200' => 'sbr', 'Sabra03G0075800' => 'sbr', 'Sabra18G0097800' => 'sbr', 'SalBow1G4772' => 'sbo', 'SalBow4G0257' => 'sbo', 'SalBow6G4598' => 'sbo', 'Sc07g0009100' => 'sci', 'Sc18g0000070' => 'sci', 'Sc25g0000070' => 'sci', 'Sed0006247' => 'sed', 'Sed0008653' => 'sed', 'Sed0021433' => 'sed', 'SEGI_00705' => 'sgi', 'SEGI_04493' => 'sgi', 'SEGI_21219' => 'sgi', 'SEGI_29457' => 'sgi', 'SEGI_34383' => 'sgi', 'SGA_v2.0_scaffold104G30219' => 'sas', 'SGA_v2.0_scaffold199G41246' => 'sas', 'SGA_v2.0_scaffold2G01202' => 'sas', 'SGA_v2.0_scaffold45G17061' => 'sas', 'SGA_v2.0_scaffold543G52826' => 'sas', 'SGA_v2.0_scaffold69G23156' => 'sas', 'SHI03286' => 'shi', 'SMO228G0013' => 'smo', 'SMO232G0100' => 'smo', 'SMO356G0579' => 'smo', 'Solyc03g093140.3' => 'sly', 'Solyc04g056713.1' => 'sly', 'Solyc06g034290.3' => 'sly', 'Solyc06g060910.2' => 'sly', 'Solyc07g025090.1' => 'sly', 'Solyc12g010440.3' => 'sly', 'Sopen03g023930' => 'spe', 'Sopen06g010930' => 'spe', 'Sopen06g021060' => 'spe', 'Sopen12g005460' => 'spe', 'Sp1g26450' => 'spa', 'Sp1g26460' => 'spa', 'Sp3g30460' => 'spa', 'Sp5g14460' => 'spa', 'Sp7g16610' => 'spa', 'Sp7g23240' => 'spa', 'TAR375G0080' => 'tar', 'TAR625G0885' => 'tar', 'TAR629G1071' => 'tar', 'TAR636G1729' => 'tar', 'TAR636G2147' => 'tar', 'TAR636G3385' => 'tar', 'THA.LOC104798357' => 'tha', 'THA.LOC104808381' => 'tha', 'THA.LOC104808939' => 'tha', 'THA.LOC104821412' => 'tha', 'THA.LOC104825063' => 'tha', 'Thecc.03G156000' => 'tca', 'Thecc.03G243200' => 'tca', 'Thecc.09G140200' => 'tca', 'Thhalv10007400m.g' => 'esa', 'Thhalv10010285m.g' => 'esa', 'Thhalv10022662m.g' => 'esa', 'Thhalv10024874m.g' => 'esa', 'Thhalv10024964m.g' => 'esa', 'TPR.G20247' => 'tpr', 'TPR.G25766' => 'tpr', 'TPR.G31558' => 'tpr', 'TWI23G0588' => 'twi', 'TWI39G0666' => 'twi', 'TWI60G0920' => 'twi', 'TWI63G1801' => 'twi', 'unitig_21.g20315' => 'ugi', 'unitig_21.g20316' => 'ugi', 'unitig_744.g24477' => 'ugi', 'unitig_747.g21809' => 'ugi', 'unitig_92.g28269' => 'ugi', 'vmacro00042' => 'vma', 'vmacro09905' => 'vma', 'vmacro21887' => 'vma', 'VMungo0251G2163' => 'vmu', 'VMungo1127G0431' => 'vmu', 'VMungo1309G3061' => 'vmu', 'Zm00001eb172590' => 'zma', 'Zm00001eb249190' => 'zma', 'Zm00001eb268090' => 'zma', 'Zm00001eb415960' => 'zma', 'Zm00001eb429440' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001352', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001352' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001352', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '464', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001352' ) ), 'genes' => array( 'A01p09630' => 'bna', 'A01p16490' => 'bna', 'A03p50530' => 'bna', 'A04p28730' => 'bna', 'A06p20250' => 'bna', 'A07p04010' => 'bna', 'A08p11070' => 'bna', 'A08p13220' => 'bna', 'A09p19260' => 'bna', 'A10p29150' => 'bna', 'Aa31LG3G10500' => 'aar', 'Aa31LG4G16220' => 'aar', 'Aa31LG6G11800' => 'aar', 'Aa31LG6G290' => 'aar', 'Aa31sc16G250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1564' => 'aag', 'Actinidia04241' => 'ach', 'Actinidia10856' => 'ach', 'Actinidia21915' => 'ach', 'Actinidia24698' => 'ach', 'Actinidia25902' => 'ach', 'Actinidia31500' => 'ach', 'Actinidia31783' => 'ach', 'Ah.07g207770' => 'amhyb', 'Ah.09g223930' => 'amhyb', 'Ah.12g054070' => 'amhyb', 'AL1G44600' => 'aly', 'AL3G45150' => 'aly', 'AL5G26640' => 'aly', 'AL7G27930' => 'aly', 'AL7G37070' => 'aly', 'Aqoxy3G02686' => 'aox', 'Aqoxy409s001' => 'aox', 'Aqoxy5G03902' => 'aox', 'Aqoxy5G03903' => 'aox', 'Aqoxy7G00750' => 'aox', 'Aqoxy7G03547' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5QUI8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8TQ98L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG4CQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8M0UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK9E2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIR7X4' => 'arhy', 'AT1G30560' => 'ath', 'AT2G13100' => 'ath', 'AT3G47420' => 'ath', 'AT4G17550' => 'ath', 'AT4G25220' => 'ath', 'ATR0317G121' => 'atr', 'ATR0665G665' => 'atr', 'ATR0767G126' => 'atr', 'Atru.chr1.725' => 'acertr', 'Atru.chr2.2273' => 'acertr', 'Atru.chr3.2577' => 'acertr', 'Atru.chr7.267' => 'acertr', 'Atru.chr9.1229' => 'acertr', 'AUR62002203' => 'cqu', 'AUR62007151' => 'cqu', 'AUR62011248' => 'cqu', 'AUR62015499' => 'cqu', 'AUR62018860' => 'cqu', 'AUR62041456' => 'cqu', 'BcaB01g00927' => 'bca', 'BcaB01g02682' => 'bca', 'BcaB03g16460' => 'bca', 'BcaB04g18210' => 'bca', 'BcaB04g18427' => 'bca', 'BcaC01g01827' => 'bca', 'BcaC03g14077' => 'bca', 'BcaC06g33559' => 'bca', 'BcaC06g36222' => 'bca', 'BcaC07g37811' => 'bca', 'BcaC07g38087' => 'bca', 'BcaC09g50796' => 'bca', 'BcaC09g51631' => 'bca', 'BcaNung00081' => 'bca', 'BcaNung03456' => 'bca', 'BcaNung06353' => 'bca', 'BolC1t01086H' => 'bol', 'BolC1t01996H' => 'bol', 'BolC3t19446H' => 'bol', 'BolC7t41053H' => 'bol', 'BolC7t45393H' => 'bol', 'BolC8t48200H' => 'bol', 'BolC8t48501H' => 'bol', 'BolC9t57242H' => 'bol', 'BolC9t57243H' => 'bol', 'BraA01t00905Z' => 'bra', 'BraA01t01603Z' => 'bra', 'BraA02t06003Z' => 'bra', 'BraA02t08062Z' => 'bra', 'BraA03t14142Z' => 'bra', 'BraA06t25107Z' => 'bra', 'BraA07t28192Z' => 'bra', 'BraA08t33101Z' => 'bra', 'BraA08t33305Z' => 'bra', 'C01p11200' => 'bna', 'C01p20700' => 'bna', 'C03p71520' => 'bna', 'C04p26810' => 'bna', 'C04p53500' => 'bna', 'C07p06370' => 'bna', 'C07p48850' => 'bna', 'C07p52870' => 'bna', 'CAN.G48.20' => 'can', 'CAN.G49.1' => 'can', 'CAN.G551.20' => 'can', 'CAN.G62.3' => 'can', 'CANSAT11G2569' => 'cansat', 'CANSAT21G0939' => 'cansat', 'CANSAT56G3821' => 'cansat', 'CARHR030010' => 'chi', 'CARHR105110' => 'chi', 'CARHR156060' => 'chi', 'CARHR224250' => 'chi', 'CARHR232620' => 'chi', 'Carub.0001s2882' => 'cru', 'Carub.0003s2785' => 'cru', 'Carub.0005s1351' => 'cru', 'Carub.0007s1581' => 'cru', 'Carub.0007s2384' => 'cru', 'Ca_17004_v3' => 'car', 'Ca_19622_v3' => 'car', 'Ca_22005_v3' => 'car', 'CBR_g25854' => 'cbr', 'CBR_g6311' => 'cbr', 'Cc02_g04240' => 'ccan', 'Cc06_g07490' => 'ccan', 'Cc08_g11500' => 'ccan', 'CDE02G2828' => 'cde', 'CDE04G1824' => 'cde', 'CDE06G1252' => 'cde', 'CDE07G1279' => 'cde', 'CDE09G0609' => 'cde', 'CDE11G0215' => 'cde', 'CDE11G0340' => 'cde', 'CDE11G0482' => 'cde', 'CDE12G0142' => 'cde', 'CDE12G0167' => 'cde', 'CDE12G0803' => 'cde', 'Cfa008169' => 'cfa', 'Cfa020901' => 'cfa', 'Ciclev10004728m.g' => 'ccl', 'Ciclev10008087m.g' => 'ccl', 'Ciclev10019641m.g' => 'ccl', 'CiPaw.03G093400' => 'cil', 'CiPaw.04G060000' => 'cil', 'CiPaw.12G047600' => 'cil', 'CiPaw.16G118200' => 'cil', 'ClCG01G005470' => 'cla', 'ClCG06G011970' => 'cla', 'COL.COLO4_14124' => 'col', 'COL.COLO4_21684' => 'col', 'COL.COLO4_24117' => 'col', 'Cpa.g.sc3.321' => 'cpa', 'Cpa.g.sc46.82' => 'cpa', 'Cpa.g.sc89.8' => 'cpa', 'Cre12.g503000' => 'cre', 'CsaV3_1G028430' => 'csa', 'CsaV3_5G005700' => 'csa', 'CSS0007503' => 'camsi', 'CSS0007899' => 'camsi', 'CSS0016319' => 'camsi', 'CSS0022696' => 'camsi', 'CSS0022717' => 'camsi', 'CSS0033927' => 'camsi', 'CSS0050500' => 'camsi', 'DCAR_000651' => 'dca', 'DCAR_004594' => 'dca', 'DCAR_008871' => 'dca', 'DCAR_018108' => 'dca', 'DCAR_020190' => 'dca', 'Dinv06557' => 'din', 'Dinv22948' => 'din', 'Dinv28570' => 'din', 'Dinv28862' => 'din', 'Dinv42921' => 'din', 'Dinv43179' => 'din', 'Duzib068G0426' => 'dzi', 'Duzib068G1196' => 'dzi', 'Duzib084G1015' => 'dzi', 'Duzib150G0190' => 'dzi', 'Duzib187G0384' => 'dzi', 'Duzib205G0734' => 'dzi', 'Duzib205G1196' => 'dzi', 'ECA232G0430' => 'eca', 'ECA233G5134' => 'eca', 'ECA234G1044' => 'eca', 'ECA238G2838' => 'eca', 'EL10Ac3g05844' => 'bvu', 'EL10Ac5g12289' => 'bvu', 'EL10Ac8g18809' => 'bvu', 'Eucgr.A02892' => 'egr', 'Eucgr.C04092' => 'egr', 'Eucgr.E00368' => 'egr', 'Eucgr.K00158' => 'egr', 'Eucgr.K00159' => 'egr', 'FAN01G2529' => 'fan', 'FAN03G2500' => 'fan', 'FAN04G1310' => 'fan', 'FAN06G1188' => 'fan', 'FAN06G3797' => 'fan', 'FAN08G0840' => 'fan', 'FAN09G2179' => 'fan', 'FAN10G1139' => 'fan', 'FAN13G2200' => 'fan', 'FAN18G1235' => 'fan', 'FAN19G2270' => 'fan', 'FAN21G3042' => 'fan', 'FAN23G0836' => 'fan', 'FAN26G0685' => 'fan', 'FvH4_1g01800' => 'fve', 'FvH4_5g20200' => 'fve', 'FvH4_7g27550' => 'fve', 'Glyma.05G064500' => 'gma', 'Glyma.09G096500' => 'gma', 'Glyma.09G223700' => 'gma', 'Glyma.12G013200' => 'gma', 'Glyma.15G201400' => 'gma', 'Glyma.17G146300' => 'gma', 'Glyma.20G074366' => 'gma', 'Gohir.A03G058900' => 'ghi', 'Gohir.A06G051000' => 'ghi', 'Gohir.A07G041400' => 'ghi', 'Gohir.A12G198500' => 'ghi', 'Gohir.A12G213800' => 'ghi', 'Gohir.D03G107200' => 'ghi', 'Gohir.D06G050100' => 'ghi', 'Gohir.D07G045500' => 'ghi', 'Gohir.D12G201100' => 'ghi', 'Gohir.D12G216400' => 'ghi', 'Gorai.001G048600' => 'gra', 'Gorai.003G113500' => 'gra', 'Gorai.008G216200' => 'gra', 'Gorai.008G231800' => 'gra', 'Gorai.010G057000' => 'gra', 'GSVIVG01002111001' => 'vvi', 'GSVIVG01012880001' => 'vvi', 'GSVIVG01018648001' => 'vvi', 'HanXRQChr07g0205921' => 'han', 'HanXRQChr11g0332821' => 'han', 'HanXRQChr12g0357041' => 'han', 'HanXRQChr14g0461361' => 'han', 'HanXRQChr16g0512601' => 'han', 'Haze_07978' => 'cav', 'Haze_07988' => 'cav', 'Haze_19327' => 'cav', 'Haze_26942' => 'cav', 'Hma1.2p1_0432F.1_g151720' => 'hma', 'Hma1.2p1_1008F.1_g247160' => 'hma', 'Hma1.2p1_3142F.1_g333080' => 'hma', 'HPP92_010440' => 'vpl', 'HPP92_012736' => 'vpl', 'HPP92_025602' => 'vpl', 'HPP92_025642' => 'vpl', 'Hund04597' => 'sun', 'Hund11326' => 'sun', 'Hund13168' => 'sun', 'Hund14498' => 'sun', 'Lalb_Chr00c54g0413701' => 'lal', 'Lalb_Chr01g0000701' => 'lal', 'Lalb_Chr03g0024281' => 'lal', 'Lalb_Chr05g0220961' => 'lal', 'Lalb_Chr08g0233661' => 'lal', 'Lalb_Chr09g0329851' => 'lal', 'Lalb_Chr11g0072981' => 'lal', 'Lj1C980T2' => 'lonja', 'Lj2A227T60' => 'lonja', 'Lj3g0001480' => 'lja', 'Lj4g0025538' => 'lja', 'Lj6g0009460' => 'lja', 'Lj8A275T76' => 'lonja', 'Lj9A707T55' => 'lonja', 'Lsat_1_v5_gn_2_129281' => 'lsa', 'Lsat_1_v5_gn_5_94301' => 'lsa', 'Lsat_1_v5_gn_8_144501' => 'lsa', 'Lsat_1_v5_gn_8_144561' => 'lsa', 'Lsat_1_v5_gn_8_144601' => 'lsa', 'Lsat_1_v5_gn_9_52100' => 'lsa', 'Manes.01G086900' => 'mes', 'Manes.03G138500' => 'mes', 'Manes.06G134900' => 'mes', 'Manes.14G035900' => 'mes', 'Mapoly0049s0055' => 'mpo', 'MBI15_g25662_MAGBIO' => 'mbi', 'MCO03G386' => 'mco', 'MCO12G416' => 'mco', 'MD02G1013700' => 'mdo', 'MD02G1014100' => 'mdo', 'MD04G1051000' => 'mdo', 'MD04G1051200' => 'mdo', 'MD04G1051400' => 'mdo', 'MD06G1048800' => 'mdo', 'MD07G1253900' => 'mdo', 'MD15G1160500' => 'mdo', 'Medtr0004s0650' => 'mtr', 'Medtr2g460810' => 'mtr', 'Medtr4g099450' => 'mtr', 'MELO3C005383.2' => 'cme', 'MELO3C010269.2' => 'cme', 'Migut.A01051' => 'egut', 'Migut.F00474' => 'egut', 'Migut.F01182' => 'egut', 'Migut.J01266' => 'egut', 'MSTRG.12146' => 'ama', 'MSTRG.19623' => 'ama', 'MSTRG.8825' => 'ama', 'Nitab4.5_0000262g0150' => 'nta', 'Nitab4.5_0000262g0160' => 'nta', 'Nitab4.5_0000262g0170' => 'nta', 'Nitab4.5_0000448g0120' => 'nta', 'Nitab4.5_0000506g0120' => 'nta', 'Nitab4.5_0001751g0030' => 'nta', 'Nitab4.5_0002149g0010' => 'nta', 'Nitab4.5_0003456g0070' => 'nta', 'Nitab4.5_0007330g0010' => 'nta', 'Nitab4.5_0008175g0010' => 'nta', 'Nn1g00817' => 'nnu', 'Nn1g01038' => 'nnu', 'Nn3g20257' => 'nnu', 'Nn8g39689' => 'nnu', 'Oeu015327.1' => 'oeu', 'Oeu040210.1' => 'oeu', 'Oeu040793.1' => 'oeu', 'Oeu043268.1' => 'oeu', 'Os02g0652800' => 'osa', 'Os04g0555300' => 'osa', 'Os06g0179900' => 'osa', 'Os08g0156600' => 'osa', 'Peaxi162Scf00108g00220' => 'pax', 'Peaxi162Scf00190g00910' => 'pax', 'Peaxi162Scf00241g00221' => 'pax', 'Peaxi162Scf00304g01311' => 'pax', 'PGR042G3127' => 'pgr', 'PGR042G3347' => 'pgr', 'PGR102G2657' => 'pgr', 'PGR142G1126' => 'pgr', 'PGSC0003DMG400007886' => 'stu', 'PGSC0003DMG400014824' => 'stu', 'PGSC0003DMG400021591' => 'stu', 'PGSC0003DMG401024163' => 'stu', 'PGSC0003DMG402024163' => 'stu', 'Phvul.003G224300' => 'pvu', 'Phvul.009G210000' => 'pvu', 'Phvul.011G016300' => 'pvu', 'Potri.001G124200' => 'ptr', 'Potri.001G152300' => 'ptr', 'Potri.003G082366' => 'ptr', 'Potri.003G109300' => 'ptr', 'Potri.018G115000' => 'ptr', 'Pp3c23_12620' => 'ppa', 'Pp3c24_3410' => 'ppa', 'Pp3c24_3423' => 'ppa', 'PRCOL_00001233' => 'pco', 'PRCOL_00003496' => 'pco', 'PRCOL_00003608' => 'pco', 'PRCOL_00004552' => 'pco', 'Prupe.2G277200' => 'ppe', 'Prupe.3G036200' => 'ppe', 'Prupe.5G059000' => 'ppe', 'Prupe.7G255700' => 'ppe', 'Psat1g023040' => 'psa', 'Psat4g075040' => 'psa', 'Psat7g150760' => 'psa', 'PSO063G7558' => 'pso', 'PSO210G0580' => 'pso', 'PSO210G1353' => 'pso', 'PSO782G1788' => 'pso', 'QL02p091134' => 'qlo', 'QL09p019900' => 'qlo', 'QL12p009333' => 'qlo', 'RcHm_v2.0_Chr1g0374421' => 'rch', 'RcHm_v2.0_Chr2g0086771' => 'rch', 'RcHm_v2.0_Chr7g0205141' => 'rch', 'Rhsim01G0052200' => 'rsi', 'Rhsim07G0118100' => 'rsi', 'Rhsim09G0191400' => 'rsi', 'Sabra01G0095700' => 'sbr', 'Sabra01G0122100' => 'sbr', 'Sabra01G0122200' => 'sbr', 'Sabra03G0075800' => 'sbr', 'Sabra18G0097800' => 'sbr', 'SalBow1G4772' => 'sbo', 'SalBow4G0257' => 'sbo', 'SalBow6G4598' => 'sbo', 'Sc07g0009100' => 'sci', 'Sc18g0000070' => 'sci', 'Sc25g0000070' => 'sci', 'Sed0006247' => 'sed', 'Sed0008653' => 'sed', 'Sed0021433' => 'sed', 'SEGI_00705' => 'sgi', 'SEGI_04493' => 'sgi', 'SEGI_21219' => 'sgi', 'SEGI_29457' => 'sgi', 'SEGI_34383' => 'sgi', 'SGA_v2.0_scaffold104G30219' => 'sas', 'SGA_v2.0_scaffold199G41246' => 'sas', 'SGA_v2.0_scaffold2G01202' => 'sas', 'SGA_v2.0_scaffold45G17061' => 'sas', 'SGA_v2.0_scaffold543G52826' => 'sas', 'SGA_v2.0_scaffold69G23156' => 'sas', 'SHI03286' => 'shi', 'SMO228G0013' => 'smo', 'SMO232G0100' => 'smo', 'SMO356G0579' => 'smo', 'Solyc03g093140.3' => 'sly', 'Solyc04g056713.1' => 'sly', 'Solyc06g034290.3' => 'sly', 'Solyc06g060910.2' => 'sly', 'Solyc07g025090.1' => 'sly', 'Solyc12g010440.3' => 'sly', 'Sopen03g023930' => 'spe', 'Sopen06g010930' => 'spe', 'Sopen06g021060' => 'spe', 'Sopen12g005460' => 'spe', 'Sp1g26450' => 'spa', 'Sp1g26460' => 'spa', 'Sp3g30460' => 'spa', 'Sp5g14460' => 'spa', 'Sp7g16610' => 'spa', 'Sp7g23240' => 'spa', 'TAR375G0080' => 'tar', 'TAR625G0885' => 'tar', 'TAR629G1071' => 'tar', 'TAR636G1729' => 'tar', 'TAR636G2147' => 'tar', 'TAR636G3385' => 'tar', 'THA.LOC104798357' => 'tha', 'THA.LOC104808381' => 'tha', 'THA.LOC104808939' => 'tha', 'THA.LOC104821412' => 'tha', 'THA.LOC104825063' => 'tha', 'Thecc.03G156000' => 'tca', 'Thecc.03G243200' => 'tca', 'Thecc.09G140200' => 'tca', 'Thhalv10007400m.g' => 'esa', 'Thhalv10010285m.g' => 'esa', 'Thhalv10022662m.g' => 'esa', 'Thhalv10024874m.g' => 'esa', 'Thhalv10024964m.g' => 'esa', 'TPR.G20247' => 'tpr', 'TPR.G25766' => 'tpr', 'TPR.G31558' => 'tpr', 'TWI23G0588' => 'twi', 'TWI39G0666' => 'twi', 'TWI60G0920' => 'twi', 'TWI63G1801' => 'twi', 'unitig_21.g20315' => 'ugi', 'unitig_21.g20316' => 'ugi', 'unitig_744.g24477' => 'ugi', 'unitig_747.g21809' => 'ugi', 'unitig_92.g28269' => 'ugi', 'vmacro00042' => 'vma', 'vmacro09905' => 'vma', 'vmacro21887' => 'vma', 'VMungo0251G2163' => 'vmu', 'VMungo1127G0431' => 'vmu', 'VMungo1309G3061' => 'vmu', 'Zm00001eb172590' => 'zma', 'Zm00001eb249190' => 'zma', 'Zm00001eb268090' => 'zma', 'Zm00001eb415960' => 'zma', 'Zm00001eb429440' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001352' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001352' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001352' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001352' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001352', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '464', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p09630' => 'bna', 'A01p16490' => 'bna', 'A03p50530' => 'bna', 'A04p28730' => 'bna', 'A06p20250' => 'bna', 'A07p04010' => 'bna', 'A08p11070' => 'bna', 'A08p13220' => 'bna', 'A09p19260' => 'bna', 'A10p29150' => 'bna', 'Aa31LG3G10500' => 'aar', 'Aa31LG4G16220' => 'aar', 'Aa31LG6G11800' => 'aar', 'Aa31LG6G290' => 'aar', 'Aa31sc16G250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1564' => 'aag', 'Actinidia04241' => 'ach', 'Actinidia10856' => 'ach', 'Actinidia21915' => 'ach', 'Actinidia24698' => 'ach', 'Actinidia25902' => 'ach', 'Actinidia31500' => 'ach', 'Actinidia31783' => 'ach', 'Ah.07g207770' => 'amhyb', 'Ah.09g223930' => 'amhyb', 'Ah.12g054070' => 'amhyb', 'AL1G44600' => 'aly', 'AL3G45150' => 'aly', 'AL5G26640' => 'aly', 'AL7G27930' => 'aly', 'AL7G37070' => 'aly', 'Aqoxy3G02686' => 'aox', 'Aqoxy409s001' => 'aox', 'Aqoxy5G03902' => 'aox', 'Aqoxy5G03903' => 'aox', 'Aqoxy7G00750' => 'aox', 'Aqoxy7G03547' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5QUI8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8TQ98L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG4CQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8M0UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK9E2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIR7X4' => 'arhy', 'AT1G30560' => 'ath', 'AT2G13100' => 'ath', 'AT3G47420' => 'ath', 'AT4G17550' => 'ath', 'AT4G25220' => 'ath', 'ATR0317G121' => 'atr', 'ATR0665G665' => 'atr', 'ATR0767G126' => 'atr', 'Atru.chr1.725' => 'acertr', 'Atru.chr2.2273' => 'acertr', 'Atru.chr3.2577' => 'acertr', 'Atru.chr7.267' => 'acertr', 'Atru.chr9.1229' => 'acertr', 'AUR62002203' => 'cqu', 'AUR62007151' => 'cqu', 'AUR62011248' => 'cqu', 'AUR62015499' => 'cqu', 'AUR62018860' => 'cqu', 'AUR62041456' => 'cqu', 'BcaB01g00927' => 'bca', 'BcaB01g02682' => 'bca', 'BcaB03g16460' => 'bca', 'BcaB04g18210' => 'bca', 'BcaB04g18427' => 'bca', 'BcaC01g01827' => 'bca', 'BcaC03g14077' => 'bca', 'BcaC06g33559' => 'bca', 'BcaC06g36222' => 'bca', 'BcaC07g37811' => 'bca', 'BcaC07g38087' => 'bca', 'BcaC09g50796' => 'bca', 'BcaC09g51631' => 'bca', 'BcaNung00081' => 'bca', 'BcaNung03456' => 'bca', 'BcaNung06353' => 'bca', 'BolC1t01086H' => 'bol', 'BolC1t01996H' => 'bol', 'BolC3t19446H' => 'bol', 'BolC7t41053H' => 'bol', 'BolC7t45393H' => 'bol', 'BolC8t48200H' => 'bol', 'BolC8t48501H' => 'bol', 'BolC9t57242H' => 'bol', 'BolC9t57243H' => 'bol', 'BraA01t00905Z' => 'bra', 'BraA01t01603Z' => 'bra', 'BraA02t06003Z' => 'bra', 'BraA02t08062Z' => 'bra', 'BraA03t14142Z' => 'bra', 'BraA06t25107Z' => 'bra', 'BraA07t28192Z' => 'bra', 'BraA08t33101Z' => 'bra', 'BraA08t33305Z' => 'bra', 'C01p11200' => 'bna', 'C01p20700' => 'bna', 'C03p71520' => 'bna', 'C04p26810' => 'bna', 'C04p53500' => 'bna', 'C07p06370' => 'bna', 'C07p48850' => 'bna', 'C07p52870' => 'bna', 'CAN.G48.20' => 'can', 'CAN.G49.1' => 'can', 'CAN.G551.20' => 'can', 'CAN.G62.3' => 'can', 'CANSAT11G2569' => 'cansat', 'CANSAT21G0939' => 'cansat', 'CANSAT56G3821' => 'cansat', 'CARHR030010' => 'chi', 'CARHR105110' => 'chi', 'CARHR156060' => 'chi', 'CARHR224250' => 'chi', 'CARHR232620' => 'chi', 'Carub.0001s2882' => 'cru', 'Carub.0003s2785' => 'cru', 'Carub.0005s1351' => 'cru', 'Carub.0007s1581' => 'cru', 'Carub.0007s2384' => 'cru', 'Ca_17004_v3' => 'car', 'Ca_19622_v3' => 'car', 'Ca_22005_v3' => 'car', 'CBR_g25854' => 'cbr', 'CBR_g6311' => 'cbr', 'Cc02_g04240' => 'ccan', 'Cc06_g07490' => 'ccan', 'Cc08_g11500' => 'ccan', 'CDE02G2828' => 'cde', 'CDE04G1824' => 'cde', 'CDE06G1252' => 'cde', 'CDE07G1279' => 'cde', 'CDE09G0609' => 'cde', 'CDE11G0215' => 'cde', 'CDE11G0340' => 'cde', 'CDE11G0482' => 'cde', 'CDE12G0142' => 'cde', 'CDE12G0167' => 'cde', 'CDE12G0803' => 'cde', 'Cfa008169' => 'cfa', 'Cfa020901' => 'cfa', 'Ciclev10004728m.g' => 'ccl', 'Ciclev10008087m.g' => 'ccl', 'Ciclev10019641m.g' => 'ccl', 'CiPaw.03G093400' => 'cil', 'CiPaw.04G060000' => 'cil', 'CiPaw.12G047600' => 'cil', 'CiPaw.16G118200' => 'cil', 'ClCG01G005470' => 'cla', 'ClCG06G011970' => 'cla', 'COL.COLO4_14124' => 'col', 'COL.COLO4_21684' => 'col', 'COL.COLO4_24117' => 'col', 'Cpa.g.sc3.321' => 'cpa', 'Cpa.g.sc46.82' => 'cpa', 'Cpa.g.sc89.8' => 'cpa', 'Cre12.g503000' => 'cre', 'CsaV3_1G028430' => 'csa', 'CsaV3_5G005700' => 'csa', 'CSS0007503' => 'camsi', 'CSS0007899' => 'camsi', 'CSS0016319' => 'camsi', 'CSS0022696' => 'camsi', 'CSS0022717' => 'camsi', 'CSS0033927' => 'camsi', 'CSS0050500' => 'camsi', 'DCAR_000651' => 'dca', 'DCAR_004594' => 'dca', 'DCAR_008871' => 'dca', 'DCAR_018108' => 'dca', 'DCAR_020190' => 'dca', 'Dinv06557' => 'din', 'Dinv22948' => 'din', 'Dinv28570' => 'din', 'Dinv28862' => 'din', 'Dinv42921' => 'din', 'Dinv43179' => 'din', 'Duzib068G0426' => 'dzi', 'Duzib068G1196' => 'dzi', 'Duzib084G1015' => 'dzi', 'Duzib150G0190' => 'dzi', 'Duzib187G0384' => 'dzi', 'Duzib205G0734' => 'dzi', 'Duzib205G1196' => 'dzi', 'ECA232G0430' => 'eca', 'ECA233G5134' => 'eca', 'ECA234G1044' => 'eca', 'ECA238G2838' => 'eca', 'EL10Ac3g05844' => 'bvu', 'EL10Ac5g12289' => 'bvu', 'EL10Ac8g18809' => 'bvu', 'Eucgr.A02892' => 'egr', 'Eucgr.C04092' => 'egr', 'Eucgr.E00368' => 'egr', 'Eucgr.K00158' => 'egr', 'Eucgr.K00159' => 'egr', 'FAN01G2529' => 'fan', 'FAN03G2500' => 'fan', 'FAN04G1310' => 'fan', 'FAN06G1188' => 'fan', 'FAN06G3797' => 'fan', 'FAN08G0840' => 'fan', 'FAN09G2179' => 'fan', 'FAN10G1139' => 'fan', 'FAN13G2200' => 'fan', 'FAN18G1235' => 'fan', 'FAN19G2270' => 'fan', 'FAN21G3042' => 'fan', 'FAN23G0836' => 'fan', 'FAN26G0685' => 'fan', 'FvH4_1g01800' => 'fve', 'FvH4_5g20200' => 'fve', 'FvH4_7g27550' => 'fve', 'Glyma.05G064500' => 'gma', 'Glyma.09G096500' => 'gma', 'Glyma.09G223700' => 'gma', 'Glyma.12G013200' => 'gma', 'Glyma.15G201400' => 'gma', 'Glyma.17G146300' => 'gma', 'Glyma.20G074366' => 'gma', 'Gohir.A03G058900' => 'ghi', 'Gohir.A06G051000' => 'ghi', 'Gohir.A07G041400' => 'ghi', 'Gohir.A12G198500' => 'ghi', 'Gohir.A12G213800' => 'ghi', 'Gohir.D03G107200' => 'ghi', 'Gohir.D06G050100' => 'ghi', 'Gohir.D07G045500' => 'ghi', 'Gohir.D12G201100' => 'ghi', 'Gohir.D12G216400' => 'ghi', 'Gorai.001G048600' => 'gra', 'Gorai.003G113500' => 'gra', 'Gorai.008G216200' => 'gra', 'Gorai.008G231800' => 'gra', 'Gorai.010G057000' => 'gra', 'GSVIVG01002111001' => 'vvi', 'GSVIVG01012880001' => 'vvi', 'GSVIVG01018648001' => 'vvi', 'HanXRQChr07g0205921' => 'han', 'HanXRQChr11g0332821' => 'han', 'HanXRQChr12g0357041' => 'han', 'HanXRQChr14g0461361' => 'han', 'HanXRQChr16g0512601' => 'han', 'Haze_07978' => 'cav', 'Haze_07988' => 'cav', 'Haze_19327' => 'cav', 'Haze_26942' => 'cav', 'Hma1.2p1_0432F.1_g151720' => 'hma', 'Hma1.2p1_1008F.1_g247160' => 'hma', 'Hma1.2p1_3142F.1_g333080' => 'hma', 'HPP92_010440' => 'vpl', 'HPP92_012736' => 'vpl', 'HPP92_025602' => 'vpl', 'HPP92_025642' => 'vpl', 'Hund04597' => 'sun', 'Hund11326' => 'sun', 'Hund13168' => 'sun', 'Hund14498' => 'sun', 'Lalb_Chr00c54g0413701' => 'lal', 'Lalb_Chr01g0000701' => 'lal', 'Lalb_Chr03g0024281' => 'lal', 'Lalb_Chr05g0220961' => 'lal', 'Lalb_Chr08g0233661' => 'lal', 'Lalb_Chr09g0329851' => 'lal', 'Lalb_Chr11g0072981' => 'lal', 'Lj1C980T2' => 'lonja', 'Lj2A227T60' => 'lonja', 'Lj3g0001480' => 'lja', 'Lj4g0025538' => 'lja', 'Lj6g0009460' => 'lja', 'Lj8A275T76' => 'lonja', 'Lj9A707T55' => 'lonja', 'Lsat_1_v5_gn_2_129281' => 'lsa', 'Lsat_1_v5_gn_5_94301' => 'lsa', 'Lsat_1_v5_gn_8_144501' => 'lsa', 'Lsat_1_v5_gn_8_144561' => 'lsa', 'Lsat_1_v5_gn_8_144601' => 'lsa', 'Lsat_1_v5_gn_9_52100' => 'lsa', 'Manes.01G086900' => 'mes', 'Manes.03G138500' => 'mes', 'Manes.06G134900' => 'mes', 'Manes.14G035900' => 'mes', 'Mapoly0049s0055' => 'mpo', 'MBI15_g25662_MAGBIO' => 'mbi', 'MCO03G386' => 'mco', 'MCO12G416' => 'mco', 'MD02G1013700' => 'mdo', 'MD02G1014100' => 'mdo', 'MD04G1051000' => 'mdo', 'MD04G1051200' => 'mdo', 'MD04G1051400' => 'mdo', 'MD06G1048800' => 'mdo', 'MD07G1253900' => 'mdo', 'MD15G1160500' => 'mdo', 'Medtr0004s0650' => 'mtr', 'Medtr2g460810' => 'mtr', 'Medtr4g099450' => 'mtr', 'MELO3C005383.2' => 'cme', 'MELO3C010269.2' => 'cme', 'Migut.A01051' => 'egut', 'Migut.F00474' => 'egut', 'Migut.F01182' => 'egut', 'Migut.J01266' => 'egut', 'MSTRG.12146' => 'ama', 'MSTRG.19623' => 'ama', 'MSTRG.8825' => 'ama', 'Nitab4.5_0000262g0150' => 'nta', 'Nitab4.5_0000262g0160' => 'nta', 'Nitab4.5_0000262g0170' => 'nta', 'Nitab4.5_0000448g0120' => 'nta', 'Nitab4.5_0000506g0120' => 'nta', 'Nitab4.5_0001751g0030' => 'nta', 'Nitab4.5_0002149g0010' => 'nta', 'Nitab4.5_0003456g0070' => 'nta', 'Nitab4.5_0007330g0010' => 'nta', 'Nitab4.5_0008175g0010' => 'nta', 'Nn1g00817' => 'nnu', 'Nn1g01038' => 'nnu', 'Nn3g20257' => 'nnu', 'Nn8g39689' => 'nnu', 'Oeu015327.1' => 'oeu', 'Oeu040210.1' => 'oeu', 'Oeu040793.1' => 'oeu', 'Oeu043268.1' => 'oeu', 'Os02g0652800' => 'osa', 'Os04g0555300' => 'osa', 'Os06g0179900' => 'osa', 'Os08g0156600' => 'osa', 'Peaxi162Scf00108g00220' => 'pax', 'Peaxi162Scf00190g00910' => 'pax', 'Peaxi162Scf00241g00221' => 'pax', 'Peaxi162Scf00304g01311' => 'pax', 'PGR042G3127' => 'pgr', 'PGR042G3347' => 'pgr', 'PGR102G2657' => 'pgr', 'PGR142G1126' => 'pgr', 'PGSC0003DMG400007886' => 'stu', 'PGSC0003DMG400014824' => 'stu', 'PGSC0003DMG400021591' => 'stu', 'PGSC0003DMG401024163' => 'stu', 'PGSC0003DMG402024163' => 'stu', 'Phvul.003G224300' => 'pvu', 'Phvul.009G210000' => 'pvu', 'Phvul.011G016300' => 'pvu', 'Potri.001G124200' => 'ptr', 'Potri.001G152300' => 'ptr', 'Potri.003G082366' => 'ptr', 'Potri.003G109300' => 'ptr', 'Potri.018G115000' => 'ptr', 'Pp3c23_12620' => 'ppa', 'Pp3c24_3410' => 'ppa', 'Pp3c24_3423' => 'ppa', 'PRCOL_00001233' => 'pco', 'PRCOL_00003496' => 'pco', 'PRCOL_00003608' => 'pco', 'PRCOL_00004552' => 'pco', 'Prupe.2G277200' => 'ppe', 'Prupe.3G036200' => 'ppe', 'Prupe.5G059000' => 'ppe', 'Prupe.7G255700' => 'ppe', 'Psat1g023040' => 'psa', 'Psat4g075040' => 'psa', 'Psat7g150760' => 'psa', 'PSO063G7558' => 'pso', 'PSO210G0580' => 'pso', 'PSO210G1353' => 'pso', 'PSO782G1788' => 'pso', 'QL02p091134' => 'qlo', 'QL09p019900' => 'qlo', 'QL12p009333' => 'qlo', 'RcHm_v2.0_Chr1g0374421' => 'rch', 'RcHm_v2.0_Chr2g0086771' => 'rch', 'RcHm_v2.0_Chr7g0205141' => 'rch', 'Rhsim01G0052200' => 'rsi', 'Rhsim07G0118100' => 'rsi', 'Rhsim09G0191400' => 'rsi', 'Sabra01G0095700' => 'sbr', 'Sabra01G0122100' => 'sbr', 'Sabra01G0122200' => 'sbr', 'Sabra03G0075800' => 'sbr', 'Sabra18G0097800' => 'sbr', 'SalBow1G4772' => 'sbo', 'SalBow4G0257' => 'sbo', 'SalBow6G4598' => 'sbo', 'Sc07g0009100' => 'sci', 'Sc18g0000070' => 'sci', 'Sc25g0000070' => 'sci', 'Sed0006247' => 'sed', 'Sed0008653' => 'sed', 'Sed0021433' => 'sed', 'SEGI_00705' => 'sgi', 'SEGI_04493' => 'sgi', 'SEGI_21219' => 'sgi', 'SEGI_29457' => 'sgi', 'SEGI_34383' => 'sgi', 'SGA_v2.0_scaffold104G30219' => 'sas', 'SGA_v2.0_scaffold199G41246' => 'sas', 'SGA_v2.0_scaffold2G01202' => 'sas', 'SGA_v2.0_scaffold45G17061' => 'sas', 'SGA_v2.0_scaffold543G52826' => 'sas', 'SGA_v2.0_scaffold69G23156' => 'sas', 'SHI03286' => 'shi', 'SMO228G0013' => 'smo', 'SMO232G0100' => 'smo', 'SMO356G0579' => 'smo', 'Solyc03g093140.3' => 'sly', 'Solyc04g056713.1' => 'sly', 'Solyc06g034290.3' => 'sly', 'Solyc06g060910.2' => 'sly', 'Solyc07g025090.1' => 'sly', 'Solyc12g010440.3' => 'sly', 'Sopen03g023930' => 'spe', 'Sopen06g010930' => 'spe', 'Sopen06g021060' => 'spe', 'Sopen12g005460' => 'spe', 'Sp1g26450' => 'spa', 'Sp1g26460' => 'spa', 'Sp3g30460' => 'spa', 'Sp5g14460' => 'spa', 'Sp7g16610' => 'spa', 'Sp7g23240' => 'spa', 'TAR375G0080' => 'tar', 'TAR625G0885' => 'tar', 'TAR629G1071' => 'tar', 'TAR636G1729' => 'tar', 'TAR636G2147' => 'tar', 'TAR636G3385' => 'tar', 'THA.LOC104798357' => 'tha', 'THA.LOC104808381' => 'tha', 'THA.LOC104808939' => 'tha', 'THA.LOC104821412' => 'tha', 'THA.LOC104825063' => 'tha', 'Thecc.03G156000' => 'tca', 'Thecc.03G243200' => 'tca', 'Thecc.09G140200' => 'tca', 'Thhalv10007400m.g' => 'esa', 'Thhalv10010285m.g' => 'esa', 'Thhalv10022662m.g' => 'esa', 'Thhalv10024874m.g' => 'esa', 'Thhalv10024964m.g' => 'esa', 'TPR.G20247' => 'tpr', 'TPR.G25766' => 'tpr', 'TPR.G31558' => 'tpr', 'TWI23G0588' => 'twi', 'TWI39G0666' => 'twi', 'TWI60G0920' => 'twi', 'TWI63G1801' => 'twi', 'unitig_21.g20315' => 'ugi', 'unitig_21.g20316' => 'ugi', 'unitig_744.g24477' => 'ugi', 'unitig_747.g21809' => 'ugi', 'unitig_92.g28269' => 'ugi', 'vmacro00042' => 'vma', 'vmacro09905' => 'vma', 'vmacro21887' => 'vma', 'VMungo0251G2163' => 'vmu', 'VMungo1127G0431' => 'vmu', 'VMungo1309G3061' => 'vmu', 'Zm00001eb172590' => 'zma', 'Zm00001eb249190' => 'zma', 'Zm00001eb268090' => 'zma', 'Zm00001eb415960' => 'zma', 'Zm00001eb429440' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001352', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001352' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001352', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '464', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001352' ) ), 'genes' => array( 'A01p09630' => 'bna', 'A01p16490' => 'bna', 'A03p50530' => 'bna', 'A04p28730' => 'bna', 'A06p20250' => 'bna', 'A07p04010' => 'bna', 'A08p11070' => 'bna', 'A08p13220' => 'bna', 'A09p19260' => 'bna', 'A10p29150' => 'bna', 'Aa31LG3G10500' => 'aar', 'Aa31LG4G16220' => 'aar', 'Aa31LG6G11800' => 'aar', 'Aa31LG6G290' => 'aar', 'Aa31sc16G250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1564' => 'aag', 'Actinidia04241' => 'ach', 'Actinidia10856' => 'ach', 'Actinidia21915' => 'ach', 'Actinidia24698' => 'ach', 'Actinidia25902' => 'ach', 'Actinidia31500' => 'ach', 'Actinidia31783' => 'ach', 'Ah.07g207770' => 'amhyb', 'Ah.09g223930' => 'amhyb', 'Ah.12g054070' => 'amhyb', 'AL1G44600' => 'aly', 'AL3G45150' => 'aly', 'AL5G26640' => 'aly', 'AL7G27930' => 'aly', 'AL7G37070' => 'aly', 'Aqoxy3G02686' => 'aox', 'Aqoxy409s001' => 'aox', 'Aqoxy5G03902' => 'aox', 'Aqoxy5G03903' => 'aox', 'Aqoxy7G00750' => 'aox', 'Aqoxy7G03547' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5QUI8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8TQ98L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG4CQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8M0UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK9E2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIR7X4' => 'arhy', 'AT1G30560' => 'ath', 'AT2G13100' => 'ath', 'AT3G47420' => 'ath', 'AT4G17550' => 'ath', 'AT4G25220' => 'ath', 'ATR0317G121' => 'atr', 'ATR0665G665' => 'atr', 'ATR0767G126' => 'atr', 'Atru.chr1.725' => 'acertr', 'Atru.chr2.2273' => 'acertr', 'Atru.chr3.2577' => 'acertr', 'Atru.chr7.267' => 'acertr', 'Atru.chr9.1229' => 'acertr', 'AUR62002203' => 'cqu', 'AUR62007151' => 'cqu', 'AUR62011248' => 'cqu', 'AUR62015499' => 'cqu', 'AUR62018860' => 'cqu', 'AUR62041456' => 'cqu', 'BcaB01g00927' => 'bca', 'BcaB01g02682' => 'bca', 'BcaB03g16460' => 'bca', 'BcaB04g18210' => 'bca', 'BcaB04g18427' => 'bca', 'BcaC01g01827' => 'bca', 'BcaC03g14077' => 'bca', 'BcaC06g33559' => 'bca', 'BcaC06g36222' => 'bca', 'BcaC07g37811' => 'bca', 'BcaC07g38087' => 'bca', 'BcaC09g50796' => 'bca', 'BcaC09g51631' => 'bca', 'BcaNung00081' => 'bca', 'BcaNung03456' => 'bca', 'BcaNung06353' => 'bca', 'BolC1t01086H' => 'bol', 'BolC1t01996H' => 'bol', 'BolC3t19446H' => 'bol', 'BolC7t41053H' => 'bol', 'BolC7t45393H' => 'bol', 'BolC8t48200H' => 'bol', 'BolC8t48501H' => 'bol', 'BolC9t57242H' => 'bol', 'BolC9t57243H' => 'bol', 'BraA01t00905Z' => 'bra', 'BraA01t01603Z' => 'bra', 'BraA02t06003Z' => 'bra', 'BraA02t08062Z' => 'bra', 'BraA03t14142Z' => 'bra', 'BraA06t25107Z' => 'bra', 'BraA07t28192Z' => 'bra', 'BraA08t33101Z' => 'bra', 'BraA08t33305Z' => 'bra', 'C01p11200' => 'bna', 'C01p20700' => 'bna', 'C03p71520' => 'bna', 'C04p26810' => 'bna', 'C04p53500' => 'bna', 'C07p06370' => 'bna', 'C07p48850' => 'bna', 'C07p52870' => 'bna', 'CAN.G48.20' => 'can', 'CAN.G49.1' => 'can', 'CAN.G551.20' => 'can', 'CAN.G62.3' => 'can', 'CANSAT11G2569' => 'cansat', 'CANSAT21G0939' => 'cansat', 'CANSAT56G3821' => 'cansat', 'CARHR030010' => 'chi', 'CARHR105110' => 'chi', 'CARHR156060' => 'chi', 'CARHR224250' => 'chi', 'CARHR232620' => 'chi', 'Carub.0001s2882' => 'cru', 'Carub.0003s2785' => 'cru', 'Carub.0005s1351' => 'cru', 'Carub.0007s1581' => 'cru', 'Carub.0007s2384' => 'cru', 'Ca_17004_v3' => 'car', 'Ca_19622_v3' => 'car', 'Ca_22005_v3' => 'car', 'CBR_g25854' => 'cbr', 'CBR_g6311' => 'cbr', 'Cc02_g04240' => 'ccan', 'Cc06_g07490' => 'ccan', 'Cc08_g11500' => 'ccan', 'CDE02G2828' => 'cde', 'CDE04G1824' => 'cde', 'CDE06G1252' => 'cde', 'CDE07G1279' => 'cde', 'CDE09G0609' => 'cde', 'CDE11G0215' => 'cde', 'CDE11G0340' => 'cde', 'CDE11G0482' => 'cde', 'CDE12G0142' => 'cde', 'CDE12G0167' => 'cde', 'CDE12G0803' => 'cde', 'Cfa008169' => 'cfa', 'Cfa020901' => 'cfa', 'Ciclev10004728m.g' => 'ccl', 'Ciclev10008087m.g' => 'ccl', 'Ciclev10019641m.g' => 'ccl', 'CiPaw.03G093400' => 'cil', 'CiPaw.04G060000' => 'cil', 'CiPaw.12G047600' => 'cil', 'CiPaw.16G118200' => 'cil', 'ClCG01G005470' => 'cla', 'ClCG06G011970' => 'cla', 'COL.COLO4_14124' => 'col', 'COL.COLO4_21684' => 'col', 'COL.COLO4_24117' => 'col', 'Cpa.g.sc3.321' => 'cpa', 'Cpa.g.sc46.82' => 'cpa', 'Cpa.g.sc89.8' => 'cpa', 'Cre12.g503000' => 'cre', 'CsaV3_1G028430' => 'csa', 'CsaV3_5G005700' => 'csa', 'CSS0007503' => 'camsi', 'CSS0007899' => 'camsi', 'CSS0016319' => 'camsi', 'CSS0022696' => 'camsi', 'CSS0022717' => 'camsi', 'CSS0033927' => 'camsi', 'CSS0050500' => 'camsi', 'DCAR_000651' => 'dca', 'DCAR_004594' => 'dca', 'DCAR_008871' => 'dca', 'DCAR_018108' => 'dca', 'DCAR_020190' => 'dca', 'Dinv06557' => 'din', 'Dinv22948' => 'din', 'Dinv28570' => 'din', 'Dinv28862' => 'din', 'Dinv42921' => 'din', 'Dinv43179' => 'din', 'Duzib068G0426' => 'dzi', 'Duzib068G1196' => 'dzi', 'Duzib084G1015' => 'dzi', 'Duzib150G0190' => 'dzi', 'Duzib187G0384' => 'dzi', 'Duzib205G0734' => 'dzi', 'Duzib205G1196' => 'dzi', 'ECA232G0430' => 'eca', 'ECA233G5134' => 'eca', 'ECA234G1044' => 'eca', 'ECA238G2838' => 'eca', 'EL10Ac3g05844' => 'bvu', 'EL10Ac5g12289' => 'bvu', 'EL10Ac8g18809' => 'bvu', 'Eucgr.A02892' => 'egr', 'Eucgr.C04092' => 'egr', 'Eucgr.E00368' => 'egr', 'Eucgr.K00158' => 'egr', 'Eucgr.K00159' => 'egr', 'FAN01G2529' => 'fan', 'FAN03G2500' => 'fan', 'FAN04G1310' => 'fan', 'FAN06G1188' => 'fan', 'FAN06G3797' => 'fan', 'FAN08G0840' => 'fan', 'FAN09G2179' => 'fan', 'FAN10G1139' => 'fan', 'FAN13G2200' => 'fan', 'FAN18G1235' => 'fan', 'FAN19G2270' => 'fan', 'FAN21G3042' => 'fan', 'FAN23G0836' => 'fan', 'FAN26G0685' => 'fan', 'FvH4_1g01800' => 'fve', 'FvH4_5g20200' => 'fve', 'FvH4_7g27550' => 'fve', 'Glyma.05G064500' => 'gma', 'Glyma.09G096500' => 'gma', 'Glyma.09G223700' => 'gma', 'Glyma.12G013200' => 'gma', 'Glyma.15G201400' => 'gma', 'Glyma.17G146300' => 'gma', 'Glyma.20G074366' => 'gma', 'Gohir.A03G058900' => 'ghi', 'Gohir.A06G051000' => 'ghi', 'Gohir.A07G041400' => 'ghi', 'Gohir.A12G198500' => 'ghi', 'Gohir.A12G213800' => 'ghi', 'Gohir.D03G107200' => 'ghi', 'Gohir.D06G050100' => 'ghi', 'Gohir.D07G045500' => 'ghi', 'Gohir.D12G201100' => 'ghi', 'Gohir.D12G216400' => 'ghi', 'Gorai.001G048600' => 'gra', 'Gorai.003G113500' => 'gra', 'Gorai.008G216200' => 'gra', 'Gorai.008G231800' => 'gra', 'Gorai.010G057000' => 'gra', 'GSVIVG01002111001' => 'vvi', 'GSVIVG01012880001' => 'vvi', 'GSVIVG01018648001' => 'vvi', 'HanXRQChr07g0205921' => 'han', 'HanXRQChr11g0332821' => 'han', 'HanXRQChr12g0357041' => 'han', 'HanXRQChr14g0461361' => 'han', 'HanXRQChr16g0512601' => 'han', 'Haze_07978' => 'cav', 'Haze_07988' => 'cav', 'Haze_19327' => 'cav', 'Haze_26942' => 'cav', 'Hma1.2p1_0432F.1_g151720' => 'hma', 'Hma1.2p1_1008F.1_g247160' => 'hma', 'Hma1.2p1_3142F.1_g333080' => 'hma', 'HPP92_010440' => 'vpl', 'HPP92_012736' => 'vpl', 'HPP92_025602' => 'vpl', 'HPP92_025642' => 'vpl', 'Hund04597' => 'sun', 'Hund11326' => 'sun', 'Hund13168' => 'sun', 'Hund14498' => 'sun', 'Lalb_Chr00c54g0413701' => 'lal', 'Lalb_Chr01g0000701' => 'lal', 'Lalb_Chr03g0024281' => 'lal', 'Lalb_Chr05g0220961' => 'lal', 'Lalb_Chr08g0233661' => 'lal', 'Lalb_Chr09g0329851' => 'lal', 'Lalb_Chr11g0072981' => 'lal', 'Lj1C980T2' => 'lonja', 'Lj2A227T60' => 'lonja', 'Lj3g0001480' => 'lja', 'Lj4g0025538' => 'lja', 'Lj6g0009460' => 'lja', 'Lj8A275T76' => 'lonja', 'Lj9A707T55' => 'lonja', 'Lsat_1_v5_gn_2_129281' => 'lsa', 'Lsat_1_v5_gn_5_94301' => 'lsa', 'Lsat_1_v5_gn_8_144501' => 'lsa', 'Lsat_1_v5_gn_8_144561' => 'lsa', 'Lsat_1_v5_gn_8_144601' => 'lsa', 'Lsat_1_v5_gn_9_52100' => 'lsa', 'Manes.01G086900' => 'mes', 'Manes.03G138500' => 'mes', 'Manes.06G134900' => 'mes', 'Manes.14G035900' => 'mes', 'Mapoly0049s0055' => 'mpo', 'MBI15_g25662_MAGBIO' => 'mbi', 'MCO03G386' => 'mco', 'MCO12G416' => 'mco', 'MD02G1013700' => 'mdo', 'MD02G1014100' => 'mdo', 'MD04G1051000' => 'mdo', 'MD04G1051200' => 'mdo', 'MD04G1051400' => 'mdo', 'MD06G1048800' => 'mdo', 'MD07G1253900' => 'mdo', 'MD15G1160500' => 'mdo', 'Medtr0004s0650' => 'mtr', 'Medtr2g460810' => 'mtr', 'Medtr4g099450' => 'mtr', 'MELO3C005383.2' => 'cme', 'MELO3C010269.2' => 'cme', 'Migut.A01051' => 'egut', 'Migut.F00474' => 'egut', 'Migut.F01182' => 'egut', 'Migut.J01266' => 'egut', 'MSTRG.12146' => 'ama', 'MSTRG.19623' => 'ama', 'MSTRG.8825' => 'ama', 'Nitab4.5_0000262g0150' => 'nta', 'Nitab4.5_0000262g0160' => 'nta', 'Nitab4.5_0000262g0170' => 'nta', 'Nitab4.5_0000448g0120' => 'nta', 'Nitab4.5_0000506g0120' => 'nta', 'Nitab4.5_0001751g0030' => 'nta', 'Nitab4.5_0002149g0010' => 'nta', 'Nitab4.5_0003456g0070' => 'nta', 'Nitab4.5_0007330g0010' => 'nta', 'Nitab4.5_0008175g0010' => 'nta', 'Nn1g00817' => 'nnu', 'Nn1g01038' => 'nnu', 'Nn3g20257' => 'nnu', 'Nn8g39689' => 'nnu', 'Oeu015327.1' => 'oeu', 'Oeu040210.1' => 'oeu', 'Oeu040793.1' => 'oeu', 'Oeu043268.1' => 'oeu', 'Os02g0652800' => 'osa', 'Os04g0555300' => 'osa', 'Os06g0179900' => 'osa', 'Os08g0156600' => 'osa', 'Peaxi162Scf00108g00220' => 'pax', 'Peaxi162Scf00190g00910' => 'pax', 'Peaxi162Scf00241g00221' => 'pax', 'Peaxi162Scf00304g01311' => 'pax', 'PGR042G3127' => 'pgr', 'PGR042G3347' => 'pgr', 'PGR102G2657' => 'pgr', 'PGR142G1126' => 'pgr', 'PGSC0003DMG400007886' => 'stu', 'PGSC0003DMG400014824' => 'stu', 'PGSC0003DMG400021591' => 'stu', 'PGSC0003DMG401024163' => 'stu', 'PGSC0003DMG402024163' => 'stu', 'Phvul.003G224300' => 'pvu', 'Phvul.009G210000' => 'pvu', 'Phvul.011G016300' => 'pvu', 'Potri.001G124200' => 'ptr', 'Potri.001G152300' => 'ptr', 'Potri.003G082366' => 'ptr', 'Potri.003G109300' => 'ptr', 'Potri.018G115000' => 'ptr', 'Pp3c23_12620' => 'ppa', 'Pp3c24_3410' => 'ppa', 'Pp3c24_3423' => 'ppa', 'PRCOL_00001233' => 'pco', 'PRCOL_00003496' => 'pco', 'PRCOL_00003608' => 'pco', 'PRCOL_00004552' => 'pco', 'Prupe.2G277200' => 'ppe', 'Prupe.3G036200' => 'ppe', 'Prupe.5G059000' => 'ppe', 'Prupe.7G255700' => 'ppe', 'Psat1g023040' => 'psa', 'Psat4g075040' => 'psa', 'Psat7g150760' => 'psa', 'PSO063G7558' => 'pso', 'PSO210G0580' => 'pso', 'PSO210G1353' => 'pso', 'PSO782G1788' => 'pso', 'QL02p091134' => 'qlo', 'QL09p019900' => 'qlo', 'QL12p009333' => 'qlo', 'RcHm_v2.0_Chr1g0374421' => 'rch', 'RcHm_v2.0_Chr2g0086771' => 'rch', 'RcHm_v2.0_Chr7g0205141' => 'rch', 'Rhsim01G0052200' => 'rsi', 'Rhsim07G0118100' => 'rsi', 'Rhsim09G0191400' => 'rsi', 'Sabra01G0095700' => 'sbr', 'Sabra01G0122100' => 'sbr', 'Sabra01G0122200' => 'sbr', 'Sabra03G0075800' => 'sbr', 'Sabra18G0097800' => 'sbr', 'SalBow1G4772' => 'sbo', 'SalBow4G0257' => 'sbo', 'SalBow6G4598' => 'sbo', 'Sc07g0009100' => 'sci', 'Sc18g0000070' => 'sci', 'Sc25g0000070' => 'sci', 'Sed0006247' => 'sed', 'Sed0008653' => 'sed', 'Sed0021433' => 'sed', 'SEGI_00705' => 'sgi', 'SEGI_04493' => 'sgi', 'SEGI_21219' => 'sgi', 'SEGI_29457' => 'sgi', 'SEGI_34383' => 'sgi', 'SGA_v2.0_scaffold104G30219' => 'sas', 'SGA_v2.0_scaffold199G41246' => 'sas', 'SGA_v2.0_scaffold2G01202' => 'sas', 'SGA_v2.0_scaffold45G17061' => 'sas', 'SGA_v2.0_scaffold543G52826' => 'sas', 'SGA_v2.0_scaffold69G23156' => 'sas', 'SHI03286' => 'shi', 'SMO228G0013' => 'smo', 'SMO232G0100' => 'smo', 'SMO356G0579' => 'smo', 'Solyc03g093140.3' => 'sly', 'Solyc04g056713.1' => 'sly', 'Solyc06g034290.3' => 'sly', 'Solyc06g060910.2' => 'sly', 'Solyc07g025090.1' => 'sly', 'Solyc12g010440.3' => 'sly', 'Sopen03g023930' => 'spe', 'Sopen06g010930' => 'spe', 'Sopen06g021060' => 'spe', 'Sopen12g005460' => 'spe', 'Sp1g26450' => 'spa', 'Sp1g26460' => 'spa', 'Sp3g30460' => 'spa', 'Sp5g14460' => 'spa', 'Sp7g16610' => 'spa', 'Sp7g23240' => 'spa', 'TAR375G0080' => 'tar', 'TAR625G0885' => 'tar', 'TAR629G1071' => 'tar', 'TAR636G1729' => 'tar', 'TAR636G2147' => 'tar', 'TAR636G3385' => 'tar', 'THA.LOC104798357' => 'tha', 'THA.LOC104808381' => 'tha', 'THA.LOC104808939' => 'tha', 'THA.LOC104821412' => 'tha', 'THA.LOC104825063' => 'tha', 'Thecc.03G156000' => 'tca', 'Thecc.03G243200' => 'tca', 'Thecc.09G140200' => 'tca', 'Thhalv10007400m.g' => 'esa', 'Thhalv10010285m.g' => 'esa', 'Thhalv10022662m.g' => 'esa', 'Thhalv10024874m.g' => 'esa', 'Thhalv10024964m.g' => 'esa', 'TPR.G20247' => 'tpr', 'TPR.G25766' => 'tpr', 'TPR.G31558' => 'tpr', 'TWI23G0588' => 'twi', 'TWI39G0666' => 'twi', 'TWI60G0920' => 'twi', 'TWI63G1801' => 'twi', 'unitig_21.g20315' => 'ugi', 'unitig_21.g20316' => 'ugi', 'unitig_744.g24477' => 'ugi', 'unitig_747.g21809' => 'ugi', 'unitig_92.g28269' => 'ugi', 'vmacro00042' => 'vma', 'vmacro09905' => 'vma', 'vmacro21887' => 'vma', 'VMungo0251G2163' => 'vmu', 'VMungo1127G0431' => 'vmu', 'VMungo1309G3061' => 'vmu', 'Zm00001eb172590' => 'zma', 'Zm00001eb249190' => 'zma', 'Zm00001eb268090' => 'zma', 'Zm00001eb415960' => 'zma', 'Zm00001eb429440' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001352' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001352' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001352' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001352' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001352', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '464', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p09630' => 'bna', 'A01p16490' => 'bna', 'A03p50530' => 'bna', 'A04p28730' => 'bna', 'A06p20250' => 'bna', 'A07p04010' => 'bna', 'A08p11070' => 'bna', 'A08p13220' => 'bna', 'A09p19260' => 'bna', 'A10p29150' => 'bna', 'Aa31LG3G10500' => 'aar', 'Aa31LG4G16220' => 'aar', 'Aa31LG6G11800' => 'aar', 'Aa31LG6G290' => 'aar', 'Aa31sc16G250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1564' => 'aag', 'Actinidia04241' => 'ach', 'Actinidia10856' => 'ach', 'Actinidia21915' => 'ach', 'Actinidia24698' => 'ach', 'Actinidia25902' => 'ach', 'Actinidia31500' => 'ach', 'Actinidia31783' => 'ach', 'Ah.07g207770' => 'amhyb', 'Ah.09g223930' => 'amhyb', 'Ah.12g054070' => 'amhyb', 'AL1G44600' => 'aly', 'AL3G45150' => 'aly', 'AL5G26640' => 'aly', 'AL7G27930' => 'aly', 'AL7G37070' => 'aly', 'Aqoxy3G02686' => 'aox', 'Aqoxy409s001' => 'aox', 'Aqoxy5G03902' => 'aox', 'Aqoxy5G03903' => 'aox', 'Aqoxy7G00750' => 'aox', 'Aqoxy7G03547' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5QUI8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8TQ98L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG4CQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8M0UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK9E2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIR7X4' => 'arhy', 'AT1G30560' => 'ath', 'AT2G13100' => 'ath', 'AT3G47420' => 'ath', 'AT4G17550' => 'ath', 'AT4G25220' => 'ath', 'ATR0317G121' => 'atr', 'ATR0665G665' => 'atr', 'ATR0767G126' => 'atr', 'Atru.chr1.725' => 'acertr', 'Atru.chr2.2273' => 'acertr', 'Atru.chr3.2577' => 'acertr', 'Atru.chr7.267' => 'acertr', 'Atru.chr9.1229' => 'acertr', 'AUR62002203' => 'cqu', 'AUR62007151' => 'cqu', 'AUR62011248' => 'cqu', 'AUR62015499' => 'cqu', 'AUR62018860' => 'cqu', 'AUR62041456' => 'cqu', 'BcaB01g00927' => 'bca', 'BcaB01g02682' => 'bca', 'BcaB03g16460' => 'bca', 'BcaB04g18210' => 'bca', 'BcaB04g18427' => 'bca', 'BcaC01g01827' => 'bca', 'BcaC03g14077' => 'bca', 'BcaC06g33559' => 'bca', 'BcaC06g36222' => 'bca', 'BcaC07g37811' => 'bca', 'BcaC07g38087' => 'bca', 'BcaC09g50796' => 'bca', 'BcaC09g51631' => 'bca', 'BcaNung00081' => 'bca', 'BcaNung03456' => 'bca', 'BcaNung06353' => 'bca', 'BolC1t01086H' => 'bol', 'BolC1t01996H' => 'bol', 'BolC3t19446H' => 'bol', 'BolC7t41053H' => 'bol', 'BolC7t45393H' => 'bol', 'BolC8t48200H' => 'bol', 'BolC8t48501H' => 'bol', 'BolC9t57242H' => 'bol', 'BolC9t57243H' => 'bol', 'BraA01t00905Z' => 'bra', 'BraA01t01603Z' => 'bra', 'BraA02t06003Z' => 'bra', 'BraA02t08062Z' => 'bra', 'BraA03t14142Z' => 'bra', 'BraA06t25107Z' => 'bra', 'BraA07t28192Z' => 'bra', 'BraA08t33101Z' => 'bra', 'BraA08t33305Z' => 'bra', 'C01p11200' => 'bna', 'C01p20700' => 'bna', 'C03p71520' => 'bna', 'C04p26810' => 'bna', 'C04p53500' => 'bna', 'C07p06370' => 'bna', 'C07p48850' => 'bna', 'C07p52870' => 'bna', 'CAN.G48.20' => 'can', 'CAN.G49.1' => 'can', 'CAN.G551.20' => 'can', 'CAN.G62.3' => 'can', 'CANSAT11G2569' => 'cansat', 'CANSAT21G0939' => 'cansat', 'CANSAT56G3821' => 'cansat', 'CARHR030010' => 'chi', 'CARHR105110' => 'chi', 'CARHR156060' => 'chi', 'CARHR224250' => 'chi', 'CARHR232620' => 'chi', 'Carub.0001s2882' => 'cru', 'Carub.0003s2785' => 'cru', 'Carub.0005s1351' => 'cru', 'Carub.0007s1581' => 'cru', 'Carub.0007s2384' => 'cru', 'Ca_17004_v3' => 'car', 'Ca_19622_v3' => 'car', 'Ca_22005_v3' => 'car', 'CBR_g25854' => 'cbr', 'CBR_g6311' => 'cbr', 'Cc02_g04240' => 'ccan', 'Cc06_g07490' => 'ccan', 'Cc08_g11500' => 'ccan', 'CDE02G2828' => 'cde', 'CDE04G1824' => 'cde', 'CDE06G1252' => 'cde', 'CDE07G1279' => 'cde', 'CDE09G0609' => 'cde', 'CDE11G0215' => 'cde', 'CDE11G0340' => 'cde', 'CDE11G0482' => 'cde', 'CDE12G0142' => 'cde', 'CDE12G0167' => 'cde', 'CDE12G0803' => 'cde', 'Cfa008169' => 'cfa', 'Cfa020901' => 'cfa', 'Ciclev10004728m.g' => 'ccl', 'Ciclev10008087m.g' => 'ccl', 'Ciclev10019641m.g' => 'ccl', 'CiPaw.03G093400' => 'cil', 'CiPaw.04G060000' => 'cil', 'CiPaw.12G047600' => 'cil', 'CiPaw.16G118200' => 'cil', 'ClCG01G005470' => 'cla', 'ClCG06G011970' => 'cla', 'COL.COLO4_14124' => 'col', 'COL.COLO4_21684' => 'col', 'COL.COLO4_24117' => 'col', 'Cpa.g.sc3.321' => 'cpa', 'Cpa.g.sc46.82' => 'cpa', 'Cpa.g.sc89.8' => 'cpa', 'Cre12.g503000' => 'cre', 'CsaV3_1G028430' => 'csa', 'CsaV3_5G005700' => 'csa', 'CSS0007503' => 'camsi', 'CSS0007899' => 'camsi', 'CSS0016319' => 'camsi', 'CSS0022696' => 'camsi', 'CSS0022717' => 'camsi', 'CSS0033927' => 'camsi', 'CSS0050500' => 'camsi', 'DCAR_000651' => 'dca', 'DCAR_004594' => 'dca', 'DCAR_008871' => 'dca', 'DCAR_018108' => 'dca', 'DCAR_020190' => 'dca', 'Dinv06557' => 'din', 'Dinv22948' => 'din', 'Dinv28570' => 'din', 'Dinv28862' => 'din', 'Dinv42921' => 'din', 'Dinv43179' => 'din', 'Duzib068G0426' => 'dzi', 'Duzib068G1196' => 'dzi', 'Duzib084G1015' => 'dzi', 'Duzib150G0190' => 'dzi', 'Duzib187G0384' => 'dzi', 'Duzib205G0734' => 'dzi', 'Duzib205G1196' => 'dzi', 'ECA232G0430' => 'eca', 'ECA233G5134' => 'eca', 'ECA234G1044' => 'eca', 'ECA238G2838' => 'eca', 'EL10Ac3g05844' => 'bvu', 'EL10Ac5g12289' => 'bvu', 'EL10Ac8g18809' => 'bvu', 'Eucgr.A02892' => 'egr', 'Eucgr.C04092' => 'egr', 'Eucgr.E00368' => 'egr', 'Eucgr.K00158' => 'egr', 'Eucgr.K00159' => 'egr', 'FAN01G2529' => 'fan', 'FAN03G2500' => 'fan', 'FAN04G1310' => 'fan', 'FAN06G1188' => 'fan', 'FAN06G3797' => 'fan', 'FAN08G0840' => 'fan', 'FAN09G2179' => 'fan', 'FAN10G1139' => 'fan', 'FAN13G2200' => 'fan', 'FAN18G1235' => 'fan', 'FAN19G2270' => 'fan', 'FAN21G3042' => 'fan', 'FAN23G0836' => 'fan', 'FAN26G0685' => 'fan', 'FvH4_1g01800' => 'fve', 'FvH4_5g20200' => 'fve', 'FvH4_7g27550' => 'fve', 'Glyma.05G064500' => 'gma', 'Glyma.09G096500' => 'gma', 'Glyma.09G223700' => 'gma', 'Glyma.12G013200' => 'gma', 'Glyma.15G201400' => 'gma', 'Glyma.17G146300' => 'gma', 'Glyma.20G074366' => 'gma', 'Gohir.A03G058900' => 'ghi', 'Gohir.A06G051000' => 'ghi', 'Gohir.A07G041400' => 'ghi', 'Gohir.A12G198500' => 'ghi', 'Gohir.A12G213800' => 'ghi', 'Gohir.D03G107200' => 'ghi', 'Gohir.D06G050100' => 'ghi', 'Gohir.D07G045500' => 'ghi', 'Gohir.D12G201100' => 'ghi', 'Gohir.D12G216400' => 'ghi', 'Gorai.001G048600' => 'gra', 'Gorai.003G113500' => 'gra', 'Gorai.008G216200' => 'gra', 'Gorai.008G231800' => 'gra', 'Gorai.010G057000' => 'gra', 'GSVIVG01002111001' => 'vvi', 'GSVIVG01012880001' => 'vvi', 'GSVIVG01018648001' => 'vvi', 'HanXRQChr07g0205921' => 'han', 'HanXRQChr11g0332821' => 'han', 'HanXRQChr12g0357041' => 'han', 'HanXRQChr14g0461361' => 'han', 'HanXRQChr16g0512601' => 'han', 'Haze_07978' => 'cav', 'Haze_07988' => 'cav', 'Haze_19327' => 'cav', 'Haze_26942' => 'cav', 'Hma1.2p1_0432F.1_g151720' => 'hma', 'Hma1.2p1_1008F.1_g247160' => 'hma', 'Hma1.2p1_3142F.1_g333080' => 'hma', 'HPP92_010440' => 'vpl', 'HPP92_012736' => 'vpl', 'HPP92_025602' => 'vpl', 'HPP92_025642' => 'vpl', 'Hund04597' => 'sun', 'Hund11326' => 'sun', 'Hund13168' => 'sun', 'Hund14498' => 'sun', 'Lalb_Chr00c54g0413701' => 'lal', 'Lalb_Chr01g0000701' => 'lal', 'Lalb_Chr03g0024281' => 'lal', 'Lalb_Chr05g0220961' => 'lal', 'Lalb_Chr08g0233661' => 'lal', 'Lalb_Chr09g0329851' => 'lal', 'Lalb_Chr11g0072981' => 'lal', 'Lj1C980T2' => 'lonja', 'Lj2A227T60' => 'lonja', 'Lj3g0001480' => 'lja', 'Lj4g0025538' => 'lja', 'Lj6g0009460' => 'lja', 'Lj8A275T76' => 'lonja', 'Lj9A707T55' => 'lonja', 'Lsat_1_v5_gn_2_129281' => 'lsa', 'Lsat_1_v5_gn_5_94301' => 'lsa', 'Lsat_1_v5_gn_8_144501' => 'lsa', 'Lsat_1_v5_gn_8_144561' => 'lsa', 'Lsat_1_v5_gn_8_144601' => 'lsa', 'Lsat_1_v5_gn_9_52100' => 'lsa', 'Manes.01G086900' => 'mes', 'Manes.03G138500' => 'mes', 'Manes.06G134900' => 'mes', 'Manes.14G035900' => 'mes', 'Mapoly0049s0055' => 'mpo', 'MBI15_g25662_MAGBIO' => 'mbi', 'MCO03G386' => 'mco', 'MCO12G416' => 'mco', 'MD02G1013700' => 'mdo', 'MD02G1014100' => 'mdo', 'MD04G1051000' => 'mdo', 'MD04G1051200' => 'mdo', 'MD04G1051400' => 'mdo', 'MD06G1048800' => 'mdo', 'MD07G1253900' => 'mdo', 'MD15G1160500' => 'mdo', 'Medtr0004s0650' => 'mtr', 'Medtr2g460810' => 'mtr', 'Medtr4g099450' => 'mtr', 'MELO3C005383.2' => 'cme', 'MELO3C010269.2' => 'cme', 'Migut.A01051' => 'egut', 'Migut.F00474' => 'egut', 'Migut.F01182' => 'egut', 'Migut.J01266' => 'egut', 'MSTRG.12146' => 'ama', 'MSTRG.19623' => 'ama', 'MSTRG.8825' => 'ama', 'Nitab4.5_0000262g0150' => 'nta', 'Nitab4.5_0000262g0160' => 'nta', 'Nitab4.5_0000262g0170' => 'nta', 'Nitab4.5_0000448g0120' => 'nta', 'Nitab4.5_0000506g0120' => 'nta', 'Nitab4.5_0001751g0030' => 'nta', 'Nitab4.5_0002149g0010' => 'nta', 'Nitab4.5_0003456g0070' => 'nta', 'Nitab4.5_0007330g0010' => 'nta', 'Nitab4.5_0008175g0010' => 'nta', 'Nn1g00817' => 'nnu', 'Nn1g01038' => 'nnu', 'Nn3g20257' => 'nnu', 'Nn8g39689' => 'nnu', 'Oeu015327.1' => 'oeu', 'Oeu040210.1' => 'oeu', 'Oeu040793.1' => 'oeu', 'Oeu043268.1' => 'oeu', 'Os02g0652800' => 'osa', 'Os04g0555300' => 'osa', 'Os06g0179900' => 'osa', 'Os08g0156600' => 'osa', 'Peaxi162Scf00108g00220' => 'pax', 'Peaxi162Scf00190g00910' => 'pax', 'Peaxi162Scf00241g00221' => 'pax', 'Peaxi162Scf00304g01311' => 'pax', 'PGR042G3127' => 'pgr', 'PGR042G3347' => 'pgr', 'PGR102G2657' => 'pgr', 'PGR142G1126' => 'pgr', 'PGSC0003DMG400007886' => 'stu', 'PGSC0003DMG400014824' => 'stu', 'PGSC0003DMG400021591' => 'stu', 'PGSC0003DMG401024163' => 'stu', 'PGSC0003DMG402024163' => 'stu', 'Phvul.003G224300' => 'pvu', 'Phvul.009G210000' => 'pvu', 'Phvul.011G016300' => 'pvu', 'Potri.001G124200' => 'ptr', 'Potri.001G152300' => 'ptr', 'Potri.003G082366' => 'ptr', 'Potri.003G109300' => 'ptr', 'Potri.018G115000' => 'ptr', 'Pp3c23_12620' => 'ppa', 'Pp3c24_3410' => 'ppa', 'Pp3c24_3423' => 'ppa', 'PRCOL_00001233' => 'pco', 'PRCOL_00003496' => 'pco', 'PRCOL_00003608' => 'pco', 'PRCOL_00004552' => 'pco', 'Prupe.2G277200' => 'ppe', 'Prupe.3G036200' => 'ppe', 'Prupe.5G059000' => 'ppe', 'Prupe.7G255700' => 'ppe', 'Psat1g023040' => 'psa', 'Psat4g075040' => 'psa', 'Psat7g150760' => 'psa', 'PSO063G7558' => 'pso', 'PSO210G0580' => 'pso', 'PSO210G1353' => 'pso', 'PSO782G1788' => 'pso', 'QL02p091134' => 'qlo', 'QL09p019900' => 'qlo', 'QL12p009333' => 'qlo', 'RcHm_v2.0_Chr1g0374421' => 'rch', 'RcHm_v2.0_Chr2g0086771' => 'rch', 'RcHm_v2.0_Chr7g0205141' => 'rch', 'Rhsim01G0052200' => 'rsi', 'Rhsim07G0118100' => 'rsi', 'Rhsim09G0191400' => 'rsi', 'Sabra01G0095700' => 'sbr', 'Sabra01G0122100' => 'sbr', 'Sabra01G0122200' => 'sbr', 'Sabra03G0075800' => 'sbr', 'Sabra18G0097800' => 'sbr', 'SalBow1G4772' => 'sbo', 'SalBow4G0257' => 'sbo', 'SalBow6G4598' => 'sbo', 'Sc07g0009100' => 'sci', 'Sc18g0000070' => 'sci', 'Sc25g0000070' => 'sci', 'Sed0006247' => 'sed', 'Sed0008653' => 'sed', 'Sed0021433' => 'sed', 'SEGI_00705' => 'sgi', 'SEGI_04493' => 'sgi', 'SEGI_21219' => 'sgi', 'SEGI_29457' => 'sgi', 'SEGI_34383' => 'sgi', 'SGA_v2.0_scaffold104G30219' => 'sas', 'SGA_v2.0_scaffold199G41246' => 'sas', 'SGA_v2.0_scaffold2G01202' => 'sas', 'SGA_v2.0_scaffold45G17061' => 'sas', 'SGA_v2.0_scaffold543G52826' => 'sas', 'SGA_v2.0_scaffold69G23156' => 'sas', 'SHI03286' => 'shi', 'SMO228G0013' => 'smo', 'SMO232G0100' => 'smo', 'SMO356G0579' => 'smo', 'Solyc03g093140.3' => 'sly', 'Solyc04g056713.1' => 'sly', 'Solyc06g034290.3' => 'sly', 'Solyc06g060910.2' => 'sly', 'Solyc07g025090.1' => 'sly', 'Solyc12g010440.3' => 'sly', 'Sopen03g023930' => 'spe', 'Sopen06g010930' => 'spe', 'Sopen06g021060' => 'spe', 'Sopen12g005460' => 'spe', 'Sp1g26450' => 'spa', 'Sp1g26460' => 'spa', 'Sp3g30460' => 'spa', 'Sp5g14460' => 'spa', 'Sp7g16610' => 'spa', 'Sp7g23240' => 'spa', 'TAR375G0080' => 'tar', 'TAR625G0885' => 'tar', 'TAR629G1071' => 'tar', 'TAR636G1729' => 'tar', 'TAR636G2147' => 'tar', 'TAR636G3385' => 'tar', 'THA.LOC104798357' => 'tha', 'THA.LOC104808381' => 'tha', 'THA.LOC104808939' => 'tha', 'THA.LOC104821412' => 'tha', 'THA.LOC104825063' => 'tha', 'Thecc.03G156000' => 'tca', 'Thecc.03G243200' => 'tca', 'Thecc.09G140200' => 'tca', 'Thhalv10007400m.g' => 'esa', 'Thhalv10010285m.g' => 'esa', 'Thhalv10022662m.g' => 'esa', 'Thhalv10024874m.g' => 'esa', 'Thhalv10024964m.g' => 'esa', 'TPR.G20247' => 'tpr', 'TPR.G25766' => 'tpr', 'TPR.G31558' => 'tpr', 'TWI23G0588' => 'twi', 'TWI39G0666' => 'twi', 'TWI60G0920' => 'twi', 'TWI63G1801' => 'twi', 'unitig_21.g20315' => 'ugi', 'unitig_21.g20316' => 'ugi', 'unitig_744.g24477' => 'ugi', 'unitig_747.g21809' => 'ugi', 'unitig_92.g28269' => 'ugi', 'vmacro00042' => 'vma', 'vmacro09905' => 'vma', 'vmacro21887' => 'vma', 'VMungo0251G2163' => 'vmu', 'VMungo1127G0431' => 'vmu', 'VMungo1309G3061' => 'vmu', 'Zm00001eb172590' => 'zma', 'Zm00001eb249190' => 'zma', 'Zm00001eb268090' => 'zma', 'Zm00001eb415960' => 'zma', 'Zm00001eb429440' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001352', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001352' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001352', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '464', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001352' ) ), 'genes' => array( 'A01p09630' => 'bna', 'A01p16490' => 'bna', 'A03p50530' => 'bna', 'A04p28730' => 'bna', 'A06p20250' => 'bna', 'A07p04010' => 'bna', 'A08p11070' => 'bna', 'A08p13220' => 'bna', 'A09p19260' => 'bna', 'A10p29150' => 'bna', 'Aa31LG3G10500' => 'aar', 'Aa31LG4G16220' => 'aar', 'Aa31LG6G11800' => 'aar', 'Aa31LG6G290' => 'aar', 'Aa31sc16G250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1564' => 'aag', 'Actinidia04241' => 'ach', 'Actinidia10856' => 'ach', 'Actinidia21915' => 'ach', 'Actinidia24698' => 'ach', 'Actinidia25902' => 'ach', 'Actinidia31500' => 'ach', 'Actinidia31783' => 'ach', 'Ah.07g207770' => 'amhyb', 'Ah.09g223930' => 'amhyb', 'Ah.12g054070' => 'amhyb', 'AL1G44600' => 'aly', 'AL3G45150' => 'aly', 'AL5G26640' => 'aly', 'AL7G27930' => 'aly', 'AL7G37070' => 'aly', 'Aqoxy3G02686' => 'aox', 'Aqoxy409s001' => 'aox', 'Aqoxy5G03902' => 'aox', 'Aqoxy5G03903' => 'aox', 'Aqoxy7G00750' => 'aox', 'Aqoxy7G03547' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5QUI8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8TQ98L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG4CQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8M0UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK9E2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIR7X4' => 'arhy', 'AT1G30560' => 'ath', 'AT2G13100' => 'ath', 'AT3G47420' => 'ath', 'AT4G17550' => 'ath', 'AT4G25220' => 'ath', 'ATR0317G121' => 'atr', 'ATR0665G665' => 'atr', 'ATR0767G126' => 'atr', 'Atru.chr1.725' => 'acertr', 'Atru.chr2.2273' => 'acertr', 'Atru.chr3.2577' => 'acertr', 'Atru.chr7.267' => 'acertr', 'Atru.chr9.1229' => 'acertr', 'AUR62002203' => 'cqu', 'AUR62007151' => 'cqu', 'AUR62011248' => 'cqu', 'AUR62015499' => 'cqu', 'AUR62018860' => 'cqu', 'AUR62041456' => 'cqu', 'BcaB01g00927' => 'bca', 'BcaB01g02682' => 'bca', 'BcaB03g16460' => 'bca', 'BcaB04g18210' => 'bca', 'BcaB04g18427' => 'bca', 'BcaC01g01827' => 'bca', 'BcaC03g14077' => 'bca', 'BcaC06g33559' => 'bca', 'BcaC06g36222' => 'bca', 'BcaC07g37811' => 'bca', 'BcaC07g38087' => 'bca', 'BcaC09g50796' => 'bca', 'BcaC09g51631' => 'bca', 'BcaNung00081' => 'bca', 'BcaNung03456' => 'bca', 'BcaNung06353' => 'bca', 'BolC1t01086H' => 'bol', 'BolC1t01996H' => 'bol', 'BolC3t19446H' => 'bol', 'BolC7t41053H' => 'bol', 'BolC7t45393H' => 'bol', 'BolC8t48200H' => 'bol', 'BolC8t48501H' => 'bol', 'BolC9t57242H' => 'bol', 'BolC9t57243H' => 'bol', 'BraA01t00905Z' => 'bra', 'BraA01t01603Z' => 'bra', 'BraA02t06003Z' => 'bra', 'BraA02t08062Z' => 'bra', 'BraA03t14142Z' => 'bra', 'BraA06t25107Z' => 'bra', 'BraA07t28192Z' => 'bra', 'BraA08t33101Z' => 'bra', 'BraA08t33305Z' => 'bra', 'C01p11200' => 'bna', 'C01p20700' => 'bna', 'C03p71520' => 'bna', 'C04p26810' => 'bna', 'C04p53500' => 'bna', 'C07p06370' => 'bna', 'C07p48850' => 'bna', 'C07p52870' => 'bna', 'CAN.G48.20' => 'can', 'CAN.G49.1' => 'can', 'CAN.G551.20' => 'can', 'CAN.G62.3' => 'can', 'CANSAT11G2569' => 'cansat', 'CANSAT21G0939' => 'cansat', 'CANSAT56G3821' => 'cansat', 'CARHR030010' => 'chi', 'CARHR105110' => 'chi', 'CARHR156060' => 'chi', 'CARHR224250' => 'chi', 'CARHR232620' => 'chi', 'Carub.0001s2882' => 'cru', 'Carub.0003s2785' => 'cru', 'Carub.0005s1351' => 'cru', 'Carub.0007s1581' => 'cru', 'Carub.0007s2384' => 'cru', 'Ca_17004_v3' => 'car', 'Ca_19622_v3' => 'car', 'Ca_22005_v3' => 'car', 'CBR_g25854' => 'cbr', 'CBR_g6311' => 'cbr', 'Cc02_g04240' => 'ccan', 'Cc06_g07490' => 'ccan', 'Cc08_g11500' => 'ccan', 'CDE02G2828' => 'cde', 'CDE04G1824' => 'cde', 'CDE06G1252' => 'cde', 'CDE07G1279' => 'cde', 'CDE09G0609' => 'cde', 'CDE11G0215' => 'cde', 'CDE11G0340' => 'cde', 'CDE11G0482' => 'cde', 'CDE12G0142' => 'cde', 'CDE12G0167' => 'cde', 'CDE12G0803' => 'cde', 'Cfa008169' => 'cfa', 'Cfa020901' => 'cfa', 'Ciclev10004728m.g' => 'ccl', 'Ciclev10008087m.g' => 'ccl', 'Ciclev10019641m.g' => 'ccl', 'CiPaw.03G093400' => 'cil', 'CiPaw.04G060000' => 'cil', 'CiPaw.12G047600' => 'cil', 'CiPaw.16G118200' => 'cil', 'ClCG01G005470' => 'cla', 'ClCG06G011970' => 'cla', 'COL.COLO4_14124' => 'col', 'COL.COLO4_21684' => 'col', 'COL.COLO4_24117' => 'col', 'Cpa.g.sc3.321' => 'cpa', 'Cpa.g.sc46.82' => 'cpa', 'Cpa.g.sc89.8' => 'cpa', 'Cre12.g503000' => 'cre', 'CsaV3_1G028430' => 'csa', 'CsaV3_5G005700' => 'csa', 'CSS0007503' => 'camsi', 'CSS0007899' => 'camsi', 'CSS0016319' => 'camsi', 'CSS0022696' => 'camsi', 'CSS0022717' => 'camsi', 'CSS0033927' => 'camsi', 'CSS0050500' => 'camsi', 'DCAR_000651' => 'dca', 'DCAR_004594' => 'dca', 'DCAR_008871' => 'dca', 'DCAR_018108' => 'dca', 'DCAR_020190' => 'dca', 'Dinv06557' => 'din', 'Dinv22948' => 'din', 'Dinv28570' => 'din', 'Dinv28862' => 'din', 'Dinv42921' => 'din', 'Dinv43179' => 'din', 'Duzib068G0426' => 'dzi', 'Duzib068G1196' => 'dzi', 'Duzib084G1015' => 'dzi', 'Duzib150G0190' => 'dzi', 'Duzib187G0384' => 'dzi', 'Duzib205G0734' => 'dzi', 'Duzib205G1196' => 'dzi', 'ECA232G0430' => 'eca', 'ECA233G5134' => 'eca', 'ECA234G1044' => 'eca', 'ECA238G2838' => 'eca', 'EL10Ac3g05844' => 'bvu', 'EL10Ac5g12289' => 'bvu', 'EL10Ac8g18809' => 'bvu', 'Eucgr.A02892' => 'egr', 'Eucgr.C04092' => 'egr', 'Eucgr.E00368' => 'egr', 'Eucgr.K00158' => 'egr', 'Eucgr.K00159' => 'egr', 'FAN01G2529' => 'fan', 'FAN03G2500' => 'fan', 'FAN04G1310' => 'fan', 'FAN06G1188' => 'fan', 'FAN06G3797' => 'fan', 'FAN08G0840' => 'fan', 'FAN09G2179' => 'fan', 'FAN10G1139' => 'fan', 'FAN13G2200' => 'fan', 'FAN18G1235' => 'fan', 'FAN19G2270' => 'fan', 'FAN21G3042' => 'fan', 'FAN23G0836' => 'fan', 'FAN26G0685' => 'fan', 'FvH4_1g01800' => 'fve', 'FvH4_5g20200' => 'fve', 'FvH4_7g27550' => 'fve', 'Glyma.05G064500' => 'gma', 'Glyma.09G096500' => 'gma', 'Glyma.09G223700' => 'gma', 'Glyma.12G013200' => 'gma', 'Glyma.15G201400' => 'gma', 'Glyma.17G146300' => 'gma', 'Glyma.20G074366' => 'gma', 'Gohir.A03G058900' => 'ghi', 'Gohir.A06G051000' => 'ghi', 'Gohir.A07G041400' => 'ghi', 'Gohir.A12G198500' => 'ghi', 'Gohir.A12G213800' => 'ghi', 'Gohir.D03G107200' => 'ghi', 'Gohir.D06G050100' => 'ghi', 'Gohir.D07G045500' => 'ghi', 'Gohir.D12G201100' => 'ghi', 'Gohir.D12G216400' => 'ghi', 'Gorai.001G048600' => 'gra', 'Gorai.003G113500' => 'gra', 'Gorai.008G216200' => 'gra', 'Gorai.008G231800' => 'gra', 'Gorai.010G057000' => 'gra', 'GSVIVG01002111001' => 'vvi', 'GSVIVG01012880001' => 'vvi', 'GSVIVG01018648001' => 'vvi', 'HanXRQChr07g0205921' => 'han', 'HanXRQChr11g0332821' => 'han', 'HanXRQChr12g0357041' => 'han', 'HanXRQChr14g0461361' => 'han', 'HanXRQChr16g0512601' => 'han', 'Haze_07978' => 'cav', 'Haze_07988' => 'cav', 'Haze_19327' => 'cav', 'Haze_26942' => 'cav', 'Hma1.2p1_0432F.1_g151720' => 'hma', 'Hma1.2p1_1008F.1_g247160' => 'hma', 'Hma1.2p1_3142F.1_g333080' => 'hma', 'HPP92_010440' => 'vpl', 'HPP92_012736' => 'vpl', 'HPP92_025602' => 'vpl', 'HPP92_025642' => 'vpl', 'Hund04597' => 'sun', 'Hund11326' => 'sun', 'Hund13168' => 'sun', 'Hund14498' => 'sun', 'Lalb_Chr00c54g0413701' => 'lal', 'Lalb_Chr01g0000701' => 'lal', 'Lalb_Chr03g0024281' => 'lal', 'Lalb_Chr05g0220961' => 'lal', 'Lalb_Chr08g0233661' => 'lal', 'Lalb_Chr09g0329851' => 'lal', 'Lalb_Chr11g0072981' => 'lal', 'Lj1C980T2' => 'lonja', 'Lj2A227T60' => 'lonja', 'Lj3g0001480' => 'lja', 'Lj4g0025538' => 'lja', 'Lj6g0009460' => 'lja', 'Lj8A275T76' => 'lonja', 'Lj9A707T55' => 'lonja', 'Lsat_1_v5_gn_2_129281' => 'lsa', 'Lsat_1_v5_gn_5_94301' => 'lsa', 'Lsat_1_v5_gn_8_144501' => 'lsa', 'Lsat_1_v5_gn_8_144561' => 'lsa', 'Lsat_1_v5_gn_8_144601' => 'lsa', 'Lsat_1_v5_gn_9_52100' => 'lsa', 'Manes.01G086900' => 'mes', 'Manes.03G138500' => 'mes', 'Manes.06G134900' => 'mes', 'Manes.14G035900' => 'mes', 'Mapoly0049s0055' => 'mpo', 'MBI15_g25662_MAGBIO' => 'mbi', 'MCO03G386' => 'mco', 'MCO12G416' => 'mco', 'MD02G1013700' => 'mdo', 'MD02G1014100' => 'mdo', 'MD04G1051000' => 'mdo', 'MD04G1051200' => 'mdo', 'MD04G1051400' => 'mdo', 'MD06G1048800' => 'mdo', 'MD07G1253900' => 'mdo', 'MD15G1160500' => 'mdo', 'Medtr0004s0650' => 'mtr', 'Medtr2g460810' => 'mtr', 'Medtr4g099450' => 'mtr', 'MELO3C005383.2' => 'cme', 'MELO3C010269.2' => 'cme', 'Migut.A01051' => 'egut', 'Migut.F00474' => 'egut', 'Migut.F01182' => 'egut', 'Migut.J01266' => 'egut', 'MSTRG.12146' => 'ama', 'MSTRG.19623' => 'ama', 'MSTRG.8825' => 'ama', 'Nitab4.5_0000262g0150' => 'nta', 'Nitab4.5_0000262g0160' => 'nta', 'Nitab4.5_0000262g0170' => 'nta', 'Nitab4.5_0000448g0120' => 'nta', 'Nitab4.5_0000506g0120' => 'nta', 'Nitab4.5_0001751g0030' => 'nta', 'Nitab4.5_0002149g0010' => 'nta', 'Nitab4.5_0003456g0070' => 'nta', 'Nitab4.5_0007330g0010' => 'nta', 'Nitab4.5_0008175g0010' => 'nta', 'Nn1g00817' => 'nnu', 'Nn1g01038' => 'nnu', 'Nn3g20257' => 'nnu', 'Nn8g39689' => 'nnu', 'Oeu015327.1' => 'oeu', 'Oeu040210.1' => 'oeu', 'Oeu040793.1' => 'oeu', 'Oeu043268.1' => 'oeu', 'Os02g0652800' => 'osa', 'Os04g0555300' => 'osa', 'Os06g0179900' => 'osa', 'Os08g0156600' => 'osa', 'Peaxi162Scf00108g00220' => 'pax', 'Peaxi162Scf00190g00910' => 'pax', 'Peaxi162Scf00241g00221' => 'pax', 'Peaxi162Scf00304g01311' => 'pax', 'PGR042G3127' => 'pgr', 'PGR042G3347' => 'pgr', 'PGR102G2657' => 'pgr', 'PGR142G1126' => 'pgr', 'PGSC0003DMG400007886' => 'stu', 'PGSC0003DMG400014824' => 'stu', 'PGSC0003DMG400021591' => 'stu', 'PGSC0003DMG401024163' => 'stu', 'PGSC0003DMG402024163' => 'stu', 'Phvul.003G224300' => 'pvu', 'Phvul.009G210000' => 'pvu', 'Phvul.011G016300' => 'pvu', 'Potri.001G124200' => 'ptr', 'Potri.001G152300' => 'ptr', 'Potri.003G082366' => 'ptr', 'Potri.003G109300' => 'ptr', 'Potri.018G115000' => 'ptr', 'Pp3c23_12620' => 'ppa', 'Pp3c24_3410' => 'ppa', 'Pp3c24_3423' => 'ppa', 'PRCOL_00001233' => 'pco', 'PRCOL_00003496' => 'pco', 'PRCOL_00003608' => 'pco', 'PRCOL_00004552' => 'pco', 'Prupe.2G277200' => 'ppe', 'Prupe.3G036200' => 'ppe', 'Prupe.5G059000' => 'ppe', 'Prupe.7G255700' => 'ppe', 'Psat1g023040' => 'psa', 'Psat4g075040' => 'psa', 'Psat7g150760' => 'psa', 'PSO063G7558' => 'pso', 'PSO210G0580' => 'pso', 'PSO210G1353' => 'pso', 'PSO782G1788' => 'pso', 'QL02p091134' => 'qlo', 'QL09p019900' => 'qlo', 'QL12p009333' => 'qlo', 'RcHm_v2.0_Chr1g0374421' => 'rch', 'RcHm_v2.0_Chr2g0086771' => 'rch', 'RcHm_v2.0_Chr7g0205141' => 'rch', 'Rhsim01G0052200' => 'rsi', 'Rhsim07G0118100' => 'rsi', 'Rhsim09G0191400' => 'rsi', 'Sabra01G0095700' => 'sbr', 'Sabra01G0122100' => 'sbr', 'Sabra01G0122200' => 'sbr', 'Sabra03G0075800' => 'sbr', 'Sabra18G0097800' => 'sbr', 'SalBow1G4772' => 'sbo', 'SalBow4G0257' => 'sbo', 'SalBow6G4598' => 'sbo', 'Sc07g0009100' => 'sci', 'Sc18g0000070' => 'sci', 'Sc25g0000070' => 'sci', 'Sed0006247' => 'sed', 'Sed0008653' => 'sed', 'Sed0021433' => 'sed', 'SEGI_00705' => 'sgi', 'SEGI_04493' => 'sgi', 'SEGI_21219' => 'sgi', 'SEGI_29457' => 'sgi', 'SEGI_34383' => 'sgi', 'SGA_v2.0_scaffold104G30219' => 'sas', 'SGA_v2.0_scaffold199G41246' => 'sas', 'SGA_v2.0_scaffold2G01202' => 'sas', 'SGA_v2.0_scaffold45G17061' => 'sas', 'SGA_v2.0_scaffold543G52826' => 'sas', 'SGA_v2.0_scaffold69G23156' => 'sas', 'SHI03286' => 'shi', 'SMO228G0013' => 'smo', 'SMO232G0100' => 'smo', 'SMO356G0579' => 'smo', 'Solyc03g093140.3' => 'sly', 'Solyc04g056713.1' => 'sly', 'Solyc06g034290.3' => 'sly', 'Solyc06g060910.2' => 'sly', 'Solyc07g025090.1' => 'sly', 'Solyc12g010440.3' => 'sly', 'Sopen03g023930' => 'spe', 'Sopen06g010930' => 'spe', 'Sopen06g021060' => 'spe', 'Sopen12g005460' => 'spe', 'Sp1g26450' => 'spa', 'Sp1g26460' => 'spa', 'Sp3g30460' => 'spa', 'Sp5g14460' => 'spa', 'Sp7g16610' => 'spa', 'Sp7g23240' => 'spa', 'TAR375G0080' => 'tar', 'TAR625G0885' => 'tar', 'TAR629G1071' => 'tar', 'TAR636G1729' => 'tar', 'TAR636G2147' => 'tar', 'TAR636G3385' => 'tar', 'THA.LOC104798357' => 'tha', 'THA.LOC104808381' => 'tha', 'THA.LOC104808939' => 'tha', 'THA.LOC104821412' => 'tha', 'THA.LOC104825063' => 'tha', 'Thecc.03G156000' => 'tca', 'Thecc.03G243200' => 'tca', 'Thecc.09G140200' => 'tca', 'Thhalv10007400m.g' => 'esa', 'Thhalv10010285m.g' => 'esa', 'Thhalv10022662m.g' => 'esa', 'Thhalv10024874m.g' => 'esa', 'Thhalv10024964m.g' => 'esa', 'TPR.G20247' => 'tpr', 'TPR.G25766' => 'tpr', 'TPR.G31558' => 'tpr', 'TWI23G0588' => 'twi', 'TWI39G0666' => 'twi', 'TWI60G0920' => 'twi', 'TWI63G1801' => 'twi', 'unitig_21.g20315' => 'ugi', 'unitig_21.g20316' => 'ugi', 'unitig_744.g24477' => 'ugi', 'unitig_747.g21809' => 'ugi', 'unitig_92.g28269' => 'ugi', 'vmacro00042' => 'vma', 'vmacro09905' => 'vma', 'vmacro21887' => 'vma', 'VMungo0251G2163' => 'vmu', 'VMungo1127G0431' => 'vmu', 'VMungo1309G3061' => 'vmu', 'Zm00001eb172590' => 'zma', 'Zm00001eb249190' => 'zma', 'Zm00001eb268090' => 'zma', 'Zm00001eb415960' => 'zma', 'Zm00001eb429440' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001352' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001352' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001352' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001352' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151