Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001317', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '476', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p20120' => 'bna', 'A03p20130' => 'bna', 'A03p35740' => 'bna', 'A04p21100' => 'bna', 'A04p27920' => 'bna', 'A04p27930' => 'bna', 'A05p18350' => 'bna', 'A05p39040' => 'bna', 'A07p18360' => 'bna', 'A07p21270' => 'bna', 'A07p21310' => 'bna', 'A08p15900' => 'bna', 'A09p21500' => 'bna', 'A09p43440' => 'bna', 'A09p45980' => 'bna', 'A09p68960' => 'bna', 'A10p32440' => 'bna', 'Aa31LG10G7830' => 'aar', 'Aa31LG10G8120' => 'aar', 'Aa31LG1G21570' => 'aar', 'Aa31LG3G2480' => 'aar', 'Aa31LG4G12450' => 'aar', 'Aa31LG5G21590' => 'aar', 'Aa31LG5G21600' => 'aar', 'Aa31LG5G8250' => 'aar', 'Aa31sc27G60' => 'aar', 'Aa31sc95G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3606' => 'aag', 'Actinidia05450' => 'ach', 'Actinidia10396' => 'ach', 'Actinidia24185' => 'ach', 'Actinidia31284' => 'ach', 'Actinidia34710' => 'ach', 'Ah.08g210840' => 'amhyb', 'Ah.08g216040' => 'amhyb', 'AL3G21270' => 'aly', 'AL4G22560' => 'aly', 'AL4G32510' => 'aly', 'AL4G32590' => 'aly', 'AL5G33680' => 'aly', 'AL5G33710' => 'aly', 'AL6G13170' => 'aly', 'Aqoxy1G00824' => 'aox', 'Aqoxy2G01358' => 'aox', 'Aqoxy4G02859' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3U3PFL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.95H5CE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4KAB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC2QWC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFPL44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6BTHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR4K5D' => 'arhy', 'AT2G27740' => 'ath', 'AT2G36355' => 'ath', 'AT2G36410' => 'ath', 'AT3G09980' => 'ath', 'AT3G52900' => 'ath', 'AT3G52920' => 'ath', 'AT5G03660' => 'ath', 'ATR0820G174' => 'atr', 'Atru.chr3.3357' => 'acertr', 'Atru.chr8.1614' => 'acertr', 'AUR62009804' => 'cqu', 'AUR62033550' => 'cqu', 'AUR62038116' => 'cqu', 'AUR62043077' => 'cqu', 'AUR62043109' => 'cqu', 'BcaB01g00328' => 'bca', 'BcaB01g00329' => 'bca', 'BcaB01g00331' => 'bca', 'BcaB01g03839' => 'bca', 'BcaB01g03840' => 'bca', 'BcaB02g07804' => 'bca', 'BcaB02g10111' => 'bca', 'BcaB02g10112' => 'bca', 'BcaB03g11579' => 'bca', 'BcaB06g28937' => 'bca', 'BcaB06g28938' => 'bca', 'BcaC01g04255' => 'bca', 'BcaC01g05659' => 'bca', 'BcaC01g05660' => 'bca', 'BcaC02g07595' => 'bca', 'BcaC02g07596' => 'bca', 'BcaC02g07599' => 'bca', 'BcaC02g08233' => 'bca', 'BcaC02g10902' => 'bca', 'BcaC05g26952' => 'bca', 'BcaC05g29725' => 'bca', 'BcaC06g32075' => 'bca', 'BcaC06g34382' => 'bca', 'BcaC07g39653' => 'bca', 'BcaC07g39655' => 'bca', 'BcaC08g44604' => 'bca', 'BcaC08g44609' => 'bca', 'BcaNung04563' => 'bca', 'BolC3t14751H' => 'bol', 'BolC3t14752H' => 'bol', 'BolC3t16612H' => 'bol', 'BolC4t23885H' => 'bol', 'BolC4t28022H' => 'bol', 'BolC4t28023H' => 'bol', 'BolC5t31527H' => 'bol', 'BolC5t34463H' => 'bol', 'BolC6t37260H' => 'bol', 'BolC6t37265H' => 'bol', 'BolC8t50430H' => 'bol', 'BolC9t60061H' => 'bol', 'BraA03t11262Z' => 'bra', 'BraA03t11263Z' => 'bra', 'BraA03t12748Z' => 'bra', 'BraA04t17679Z' => 'bra', 'BraA04t18283Z' => 'bra', 'BraA05t22696Z' => 'bra', 'BraA07t29552Z' => 'bra', 'BraA07t29815Z' => 'bra', 'BraA07t29818Z' => 'bra', 'BraA09t37749Z' => 'bra', 'BraA09t40061Z' => 'bra', 'BraA10t45284Z' => 'bra', 'C02p63920' => 'bna', 'C03p23570' => 'bna', 'C03p23580' => 'bna', 'C03p43410' => 'bna', 'C03p83960' => 'bna', 'C04p04350' => 'bna', 'C04p23920' => 'bna', 'C05p28000' => 'bna', 'C05p58060' => 'bna', 'C06p20770' => 'bna', 'C06p20800' => 'bna', 'C08p28170' => 'bna', 'C09p73260' => 'bna', 'CAN.G1138.24' => 'can', 'CAN.G534.17' => 'can', 'CAN.G644.20' => 'can', 'CAN.G824.17' => 'can', 'CANSAT54G0979' => 'cansat', 'CANSAT56G2006' => 'cansat', 'CANSAT80G0207' => 'cansat', 'CARHR084490' => 'chi', 'CARHR120440' => 'chi', 'CARHR130650' => 'chi', 'CARHR130710' => 'chi', 'CARHR162780' => 'chi', 'CARHR162800' => 'chi', 'CARHR209640' => 'chi', 'Carub.0003s0908' => 'cru', 'Carub.0004s0849' => 'cru', 'Carub.0004s1814' => 'cru', 'Carub.0004s1821' => 'cru', 'Carub.0004s1822' => 'cru', 'Carub.0005s1937' => 'cru', 'Carub.0005s1940' => 'cru', 'Carub.0006s0257' => 'cru', 'Ca_01672_v3' => 'car', 'Ca_08972_v3' => 'car', 'Ca_10500_v3' => 'car', 'Cc01_g09640' => 'ccan', 'Cc02_g09990' => 'ccan', 'Cc06_g05380' => 'ccan', 'Cfa010072' => 'cfa', 'Cfa011239' => 'cfa', 'Cfa016558' => 'cfa', 'Ciclev10012928m.g' => 'ccl', 'Ciclev10029402m.g' => 'ccl', 'Ciclev10032972m.g' => 'ccl', 'CiPaw.09G009700' => 'cil', 'CiPaw.10G006400' => 'cil', 'CiPaw.13G037300' => 'cil', 'CiPaw.13G139900' => 'cil', 'CiPaw.14G029500' => 'cil', 'CiPaw.14G102900' => 'cil', 'ClCG01G012520' => 'cla', 'ClCG04G009830' => 'cla', 'ClCG05G021660' => 'cla', 'ClCG10G019230' => 'cla', 'COL.COLO4_19956' => 'col', 'COL.COLO4_20108' => 'col', 'COL.COLO4_29798' => 'col', 'Cpa.g.sc19.16' => 'cpa', 'Cpa.g.sc47.78' => 'cpa', 'Cpa.g.sc5.64' => 'cpa', 'CsaV3_1G014610' => 'csa', 'CsaV3_3G036960' => 'csa', 'CsaV3_5G035610' => 'csa', 'CsaV3_6G040460' => 'csa', 'CsaV3_7G016250' => 'csa', 'CSS0010573' => 'camsi', 'CSS0014590' => 'camsi', 'CSS0016769' => 'camsi', 'CSS0040261' => 'camsi', 'DCAR_003295' => 'dca', 'DCAR_007745' => 'dca', 'DCAR_009138' => 'dca', 'DCAR_010376' => 'dca', 'DCAR_013368' => 'dca', 'Dinv01490' => 'din', 'Dinv19840' => 'din', 'Dinv20807' => 'din', 'Dinv20808' => 'din', 'Dinv21243' => 'din', 'Dinv29437' => 'din', 'Dinv42584' => 'din', 'Duzib093G0422' => 'dzi', 'Duzib106G1466' => 'dzi', 'Duzib114G0983' => 'dzi', 'Duzib128G1404' => 'dzi', 'Duzib150G1320' => 'dzi', 'Duzib168G1030' => 'dzi', 'Duzib170G1003' => 'dzi', 'ECA232G3340' => 'eca', 'ECA233G0175' => 'eca', 'ECA233G0586' => 'eca', 'ECA238G4172' => 'eca', 'ECA248G0645' => 'eca', 'EL10Ac7g15782' => 'bvu', 'EL10Ac7g16971' => 'bvu', 'Eucgr.A01535' => 'egr', 'Eucgr.B03885' => 'egr', 'Eucgr.I00610' => 'egr', 'Eucgr.I00611' => 'egr', 'Eucgr.I00613' => 'egr', 'Eucgr.I00618' => 'egr', 'Eucgr.I01679' => 'egr', 'Eucgr.J01003' => 'egr', 'Eucgr.K02066' => 'egr', 'FAN05G0604' => 'fan', 'FAN05G3700' => 'fan', 'FAN09G2556' => 'fan', 'FAN11G2257' => 'fan', 'FAN19G1423' => 'fan', 'FAN21G3263' => 'fan', 'FAN23G1439' => 'fan', 'FAN23G2475' => 'fan', 'FAN25G2980' => 'fan', 'FAN26G3147' => 'fan', 'FAN28G0119' => 'fan', 'FvH4_1g24952' => 'fve', 'FvH4_1g27500' => 'fve', 'FvH4_3g09321' => 'fve', 'FvH4_3g29660' => 'fve', 'FvH4_6g18110' => 'fve', 'Glyma.03G192100' => 'gma', 'Glyma.10G202700' => 'gma', 'Glyma.11G188000' => 'gma', 'Glyma.12G086500' => 'gma', 'Glyma.19G192600' => 'gma', 'Glyma.20G187600' => 'gma', 'Gohir.A01G208000' => 'ghi', 'Gohir.A04G026850' => 'ghi', 'Gohir.A07G108100' => 'ghi', 'Gohir.A09G094100' => 'ghi', 'Gohir.A09G137500' => 'ghi', 'Gohir.D01G197400' => 'ghi', 'Gohir.D07G111900' => 'ghi', 'Gohir.D09G093700' => 'ghi', 'Gohir.D09G137100' => 'ghi', 'Gorai.001G120300' => 'gra', 'Gorai.002G241500' => 'gra', 'Gorai.006G110300' => 'gra', 'Gorai.006G157400' => 'gra', 'GSVIVG01031383001' => 'vvi', 'GSVIVG01033798001' => 'vvi', 'GSVIVG01034739001' => 'vvi', 'HanXRQChr04g0094641' => 'han', 'HanXRQChr05g0146841' => 'han', 'HanXRQChr07g0197791' => 'han', 'HanXRQChr08g0217871' => 'han', 'HanXRQChr11g0351201' => 'han', 'HanXRQChr12g0380951' => 'han', 'HanXRQChr15g0491581' => 'han', 'HanXRQChr15g0491981' => 'han', 'Haze_02591' => 'cav', 'Haze_19559' => 'cav', 'Haze_23438' => 'cav', 'Hma1.2p1_0084F.1_g043370' => 'hma', 'Hma1.2p1_0246F.1_g101750' => 'hma', 'Hma1.2p1_0352F.1_g132990' => 'hma', 'Hma1.2p1_0646F.1_g194990' => 'hma', 'HPP92_005461' => 'vpl', 'Hund04040' => 'sun', 'Hund18733' => 'sun', 'Hund19283' => 'sun', 'Lalb_Chr02g0151421' => 'lal', 'Lalb_Chr19g0136711' => 'lal', 'Lalb_Chr20g0112121' => 'lal', 'Lalb_Chr25g0288601' => 'lal', 'Lj1g0019636' => 'lja', 'Lj2A991T87' => 'lonja', 'Lj2C131G2' => 'lonja', 'Lj2C29T21' => 'lonja', 'Lj3A1002G51' => 'lonja', 'Lj3g0001526' => 'lja', 'Lj5g0018470' => 'lja', 'Lsat_1_v5_gn_0_7361' => 'lsa', 'Lsat_1_v5_gn_1_48540' => 'lsa', 'Lsat_1_v5_gn_2_95641' => 'lsa', 'Lsat_1_v5_gn_6_41721' => 'lsa', 'Lsat_1_v5_gn_6_70780' => 'lsa', 'Manes.04G007200' => 'mes', 'Manes.07G089500' => 'mes', 'Manes.08G022200' => 'mes', 'Manes.10G057100' => 'mes', 'Manes.11G158800' => 'mes', 'Mapoly0038s0078' => 'mpo', 'MBI01_g05551_MAGBIO' => 'mbi', 'MD02G1248700' => 'mdo', 'MD02G1248800' => 'mdo', 'MD03G1136300' => 'mdo', 'MD07G1067500' => 'mdo', 'MD11G1158600' => 'mdo', 'MD12G1019800' => 'mdo', 'MD12G1020200' => 'mdo', 'MD14G1017400' => 'mdo', 'Medtr1g492930' => 'mtr', 'Medtr2g085025' => 'mtr', 'Medtr7g104020' => 'mtr', 'MELO3C004756.2' => 'cme', 'MELO3C009443.2' => 'cme', 'MELO3C012362.2' => 'cme', 'MELO3C024522.2' => 'cme', 'Migut.F00895' => 'egut', 'Migut.F01642' => 'egut', 'Migut.J00976' => 'egut', 'Migut.N02509' => 'egut', 'MSTRG.17720' => 'ama', 'MSTRG.18737' => 'ama', 'MSTRG.19237' => 'ama', 'MSTRG.27523' => 'ama', 'MSTRG.5815' => 'ama', 'MSTRG.9108' => 'ama', 'Nitab4.5_0000132g0090' => 'nta', 'Nitab4.5_0000962g0030' => 'nta', 'Nitab4.5_0000963g0040' => 'nta', 'Nitab4.5_0003454g0030' => 'nta', 'Nitab4.5_0003541g0050' => 'nta', 'Nitab4.5_0005390g0050' => 'nta', 'Nitab4.5_0006089g0030' => 'nta', 'Nitab4.5_0022552g0010' => 'nta', 'Nn2g14049' => 'nnu', 'Nn6g35015' => 'nnu', 'Oeu018723.1' => 'oeu', 'Oeu030499.1' => 'oeu', 'Oeu032418.1' => 'oeu', 'Oeu039816.1' => 'oeu', 'Oeu040529.1' => 'oeu', 'Oeu042278.1' => 'oeu', 'Oeu050192.1' => 'oeu', 'Oeu050193.1' => 'oeu', 'Oeu052893.1' => 'oeu', 'Oeu058279.1' => 'oeu', 'Os02g0528100' => 'osa', 'Os04g0408600' => 'osa', 'Peaxi162Scf00002g05425' => 'pax', 'Peaxi162Scf00068g00034' => 'pax', 'Peaxi162Scf00163g00217' => 'pax', 'Peaxi162Scf00244g01120' => 'pax', 'PGR004G1543' => 'pgr', 'PGR044G2729' => 'pgr', 'PGR102G0613' => 'pgr', 'PGR142G1757' => 'pgr', 'PGSC0003DMG400002711' => 'stu', 'PGSC0003DMG400019496' => 'stu', 'PGSC0003DMG400026542' => 'stu', 'PGSC0003DMG400028170' => 'stu', 'Phvul.001G187400' => 'pvu', 'Phvul.007G104200' => 'pvu', 'Phvul.011G091600' => 'pvu', 'Potri.004G186900' => 'ptr', 'Potri.006G115400' => 'ptr', 'Potri.009G147500' => 'ptr', 'Potri.010G235600' => 'ptr', 'Pp3c4_24280' => 'ppa', 'Prupe.2G084700' => 'ppe', 'Prupe.6G121000' => 'ppe', 'Prupe.7G115700' => 'ppe', 'Psat3g035200' => 'psa', 'Psat5g255800' => 'psa', 'Psat6g176880' => 'psa', 'PSO339G3783' => 'pso', 'PSO384G1686' => 'pso', 'PSO443G0050' => 'pso', 'QL01p013415' => 'qlo', 'QL04p042565' => 'qlo', 'QL04p042580' => 'qlo', 'QL07p040067' => 'qlo', 'RcHm_v2.0_Chr3g0472381' => 'rch', 'RcHm_v2.0_Chr3g0489011' => 'rch', 'RcHm_v2.0_Chr5g0055021' => 'rch', 'Rhsim03G0079200' => 'rsi', 'Rhsim03G0079800' => 'rsi', 'Rhsim04G0134900' => 'rsi', 'Rhsim13G0106700' => 'rsi', 'RhsimUnG0042300' => 'rsi', 'Sabra04G0125900' => 'sbr', 'Sabra06G0090300' => 'sbr', 'Sabra09G0113700' => 'sbr', 'Sabra09G0116200' => 'sbr', 'Sabra10G0182700' => 'sbr', 'SalBow3G0840' => 'sbo', 'SalBow3G4143' => 'sbo', 'SalBow3G4507' => 'sbo', 'SalBow6G2283' => 'sbo', 'SalBow6G4984' => 'sbo', 'Sc02g0001090' => 'sci', 'Sc05g0003410' => 'sci', 'Sc07g0005400' => 'sci', 'Sc12g0004260' => 'sci', 'Sed0001596' => 'sed', 'Sed0004160' => 'sed', 'Sed0008393' => 'sed', 'Sed0016219' => 'sed', 'Sed0025714' => 'sed', 'SGA_v2.0_scaffold15G07423' => 'sas', 'SGA_v2.0_scaffold27G11625' => 'sas', 'SGA_v2.0_scaffold4G02307' => 'sas', 'SGA_v2.0_scaffold62G21350' => 'sas', 'SGA_v2.0_scaffold710G53496' => 'sas', 'SGA_v2.0_scaffold71G23897' => 'sas', 'SGA_v2.0_scaffold75G24791' => 'sas', 'SGA_v2.0_scaffold83G26421' => 'sas', 'Solyc10g083520.2' => 'sly', 'Solyc11g007330.2' => 'sly', 'Solyc11g066970.3' => 'sly', 'Sopen09g003940' => 'spe', 'Sopen10g032990' => 'spe', 'Sopen11g003220' => 'spe', 'Sopen11g026690' => 'spe', 'Sp3g08320' => 'spa', 'Sp4g10570' => 'spa', 'Sp4g18700' => 'spa', 'Sp4g18710' => 'spa', 'Sp5g09410' => 'spa', 'Sp5g09440' => 'spa', 'Sp6g39070' => 'spa', 'TAR369G0967' => 'tar', 'TAR623G0765' => 'tar', 'TAR633G0289' => 'tar', 'TAR636G3651' => 'tar', 'THA.LOC104800548' => 'tha', 'THA.LOC104823107' => 'tha', 'THA.LOC104823227' => 'tha', 'THA.LOC104823463' => 'tha', 'THA.LOC104826930' => 'tha', 'THA.LOC104827507' => 'tha', 'Thecc.05G083200' => 'tca', 'Thecc.09G289800' => 'tca', 'Thecc.10G104800' => 'tca', 'Thhalv10010763m.g' => 'esa', 'Thhalv10010775m.g' => 'esa', 'Thhalv10014828m.g' => 'esa', 'Thhalv10017290m.g' => 'esa', 'Thhalv10017323m.g' => 'esa', 'Thhalv10021627m.g' => 'esa', 'TPR.G23399' => 'tpr', 'TPR.G2502' => 'tpr', 'TPR.G25372' => 'tpr', 'TPR.G8933' => 'tpr', 'TWI38G2326' => 'twi', 'TWI53G1386' => 'twi', 'TWI75G0553' => 'twi', 'TWI77G0148' => 'twi', 'TWI79G1399' => 'twi', 'unitig_26.g9246' => 'ugi', 'unitig_578.g15764' => 'ugi', 'unitig_736.g22529' => 'ugi', 'unitig_744.g24692' => 'ugi', 'unitig_749.g14290' => 'ugi', 'vmacro03287' => 'vma', 'vmacro07381' => 'vma', 'vmacro08823' => 'vma', 'vmacro10291' => 'vma', 'VMungo0720G2072' => 'vmu', 'VMungo1383G3133' => 'vmu', 'Zm00001eb242600' => 'zma', 'Zm00001eb421850' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001317', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001317' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001317', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '476', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001317' ) ), 'genes' => array( 'A03p20120' => 'bna', 'A03p20130' => 'bna', 'A03p35740' => 'bna', 'A04p21100' => 'bna', 'A04p27920' => 'bna', 'A04p27930' => 'bna', 'A05p18350' => 'bna', 'A05p39040' => 'bna', 'A07p18360' => 'bna', 'A07p21270' => 'bna', 'A07p21310' => 'bna', 'A08p15900' => 'bna', 'A09p21500' => 'bna', 'A09p43440' => 'bna', 'A09p45980' => 'bna', 'A09p68960' => 'bna', 'A10p32440' => 'bna', 'Aa31LG10G7830' => 'aar', 'Aa31LG10G8120' => 'aar', 'Aa31LG1G21570' => 'aar', 'Aa31LG3G2480' => 'aar', 'Aa31LG4G12450' => 'aar', 'Aa31LG5G21590' => 'aar', 'Aa31LG5G21600' => 'aar', 'Aa31LG5G8250' => 'aar', 'Aa31sc27G60' => 'aar', 'Aa31sc95G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3606' => 'aag', 'Actinidia05450' => 'ach', 'Actinidia10396' => 'ach', 'Actinidia24185' => 'ach', 'Actinidia31284' => 'ach', 'Actinidia34710' => 'ach', 'Ah.08g210840' => 'amhyb', 'Ah.08g216040' => 'amhyb', 'AL3G21270' => 'aly', 'AL4G22560' => 'aly', 'AL4G32510' => 'aly', 'AL4G32590' => 'aly', 'AL5G33680' => 'aly', 'AL5G33710' => 'aly', 'AL6G13170' => 'aly', 'Aqoxy1G00824' => 'aox', 'Aqoxy2G01358' => 'aox', 'Aqoxy4G02859' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3U3PFL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.95H5CE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4KAB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC2QWC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFPL44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6BTHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR4K5D' => 'arhy', 'AT2G27740' => 'ath', 'AT2G36355' => 'ath', 'AT2G36410' => 'ath', 'AT3G09980' => 'ath', 'AT3G52900' => 'ath', 'AT3G52920' => 'ath', 'AT5G03660' => 'ath', 'ATR0820G174' => 'atr', 'Atru.chr3.3357' => 'acertr', 'Atru.chr8.1614' => 'acertr', 'AUR62009804' => 'cqu', 'AUR62033550' => 'cqu', 'AUR62038116' => 'cqu', 'AUR62043077' => 'cqu', 'AUR62043109' => 'cqu', 'BcaB01g00328' => 'bca', 'BcaB01g00329' => 'bca', 'BcaB01g00331' => 'bca', 'BcaB01g03839' => 'bca', 'BcaB01g03840' => 'bca', 'BcaB02g07804' => 'bca', 'BcaB02g10111' => 'bca', 'BcaB02g10112' => 'bca', 'BcaB03g11579' => 'bca', 'BcaB06g28937' => 'bca', 'BcaB06g28938' => 'bca', 'BcaC01g04255' => 'bca', 'BcaC01g05659' => 'bca', 'BcaC01g05660' => 'bca', 'BcaC02g07595' => 'bca', 'BcaC02g07596' => 'bca', 'BcaC02g07599' => 'bca', 'BcaC02g08233' => 'bca', 'BcaC02g10902' => 'bca', 'BcaC05g26952' => 'bca', 'BcaC05g29725' => 'bca', 'BcaC06g32075' => 'bca', 'BcaC06g34382' => 'bca', 'BcaC07g39653' => 'bca', 'BcaC07g39655' => 'bca', 'BcaC08g44604' => 'bca', 'BcaC08g44609' => 'bca', 'BcaNung04563' => 'bca', 'BolC3t14751H' => 'bol', 'BolC3t14752H' => 'bol', 'BolC3t16612H' => 'bol', 'BolC4t23885H' => 'bol', 'BolC4t28022H' => 'bol', 'BolC4t28023H' => 'bol', 'BolC5t31527H' => 'bol', 'BolC5t34463H' => 'bol', 'BolC6t37260H' => 'bol', 'BolC6t37265H' => 'bol', 'BolC8t50430H' => 'bol', 'BolC9t60061H' => 'bol', 'BraA03t11262Z' => 'bra', 'BraA03t11263Z' => 'bra', 'BraA03t12748Z' => 'bra', 'BraA04t17679Z' => 'bra', 'BraA04t18283Z' => 'bra', 'BraA05t22696Z' => 'bra', 'BraA07t29552Z' => 'bra', 'BraA07t29815Z' => 'bra', 'BraA07t29818Z' => 'bra', 'BraA09t37749Z' => 'bra', 'BraA09t40061Z' => 'bra', 'BraA10t45284Z' => 'bra', 'C02p63920' => 'bna', 'C03p23570' => 'bna', 'C03p23580' => 'bna', 'C03p43410' => 'bna', 'C03p83960' => 'bna', 'C04p04350' => 'bna', 'C04p23920' => 'bna', 'C05p28000' => 'bna', 'C05p58060' => 'bna', 'C06p20770' => 'bna', 'C06p20800' => 'bna', 'C08p28170' => 'bna', 'C09p73260' => 'bna', 'CAN.G1138.24' => 'can', 'CAN.G534.17' => 'can', 'CAN.G644.20' => 'can', 'CAN.G824.17' => 'can', 'CANSAT54G0979' => 'cansat', 'CANSAT56G2006' => 'cansat', 'CANSAT80G0207' => 'cansat', 'CARHR084490' => 'chi', 'CARHR120440' => 'chi', 'CARHR130650' => 'chi', 'CARHR130710' => 'chi', 'CARHR162780' => 'chi', 'CARHR162800' => 'chi', 'CARHR209640' => 'chi', 'Carub.0003s0908' => 'cru', 'Carub.0004s0849' => 'cru', 'Carub.0004s1814' => 'cru', 'Carub.0004s1821' => 'cru', 'Carub.0004s1822' => 'cru', 'Carub.0005s1937' => 'cru', 'Carub.0005s1940' => 'cru', 'Carub.0006s0257' => 'cru', 'Ca_01672_v3' => 'car', 'Ca_08972_v3' => 'car', 'Ca_10500_v3' => 'car', 'Cc01_g09640' => 'ccan', 'Cc02_g09990' => 'ccan', 'Cc06_g05380' => 'ccan', 'Cfa010072' => 'cfa', 'Cfa011239' => 'cfa', 'Cfa016558' => 'cfa', 'Ciclev10012928m.g' => 'ccl', 'Ciclev10029402m.g' => 'ccl', 'Ciclev10032972m.g' => 'ccl', 'CiPaw.09G009700' => 'cil', 'CiPaw.10G006400' => 'cil', 'CiPaw.13G037300' => 'cil', 'CiPaw.13G139900' => 'cil', 'CiPaw.14G029500' => 'cil', 'CiPaw.14G102900' => 'cil', 'ClCG01G012520' => 'cla', 'ClCG04G009830' => 'cla', 'ClCG05G021660' => 'cla', 'ClCG10G019230' => 'cla', 'COL.COLO4_19956' => 'col', 'COL.COLO4_20108' => 'col', 'COL.COLO4_29798' => 'col', 'Cpa.g.sc19.16' => 'cpa', 'Cpa.g.sc47.78' => 'cpa', 'Cpa.g.sc5.64' => 'cpa', 'CsaV3_1G014610' => 'csa', 'CsaV3_3G036960' => 'csa', 'CsaV3_5G035610' => 'csa', 'CsaV3_6G040460' => 'csa', 'CsaV3_7G016250' => 'csa', 'CSS0010573' => 'camsi', 'CSS0014590' => 'camsi', 'CSS0016769' => 'camsi', 'CSS0040261' => 'camsi', 'DCAR_003295' => 'dca', 'DCAR_007745' => 'dca', 'DCAR_009138' => 'dca', 'DCAR_010376' => 'dca', 'DCAR_013368' => 'dca', 'Dinv01490' => 'din', 'Dinv19840' => 'din', 'Dinv20807' => 'din', 'Dinv20808' => 'din', 'Dinv21243' => 'din', 'Dinv29437' => 'din', 'Dinv42584' => 'din', 'Duzib093G0422' => 'dzi', 'Duzib106G1466' => 'dzi', 'Duzib114G0983' => 'dzi', 'Duzib128G1404' => 'dzi', 'Duzib150G1320' => 'dzi', 'Duzib168G1030' => 'dzi', 'Duzib170G1003' => 'dzi', 'ECA232G3340' => 'eca', 'ECA233G0175' => 'eca', 'ECA233G0586' => 'eca', 'ECA238G4172' => 'eca', 'ECA248G0645' => 'eca', 'EL10Ac7g15782' => 'bvu', 'EL10Ac7g16971' => 'bvu', 'Eucgr.A01535' => 'egr', 'Eucgr.B03885' => 'egr', 'Eucgr.I00610' => 'egr', 'Eucgr.I00611' => 'egr', 'Eucgr.I00613' => 'egr', 'Eucgr.I00618' => 'egr', 'Eucgr.I01679' => 'egr', 'Eucgr.J01003' => 'egr', 'Eucgr.K02066' => 'egr', 'FAN05G0604' => 'fan', 'FAN05G3700' => 'fan', 'FAN09G2556' => 'fan', 'FAN11G2257' => 'fan', 'FAN19G1423' => 'fan', 'FAN21G3263' => 'fan', 'FAN23G1439' => 'fan', 'FAN23G2475' => 'fan', 'FAN25G2980' => 'fan', 'FAN26G3147' => 'fan', 'FAN28G0119' => 'fan', 'FvH4_1g24952' => 'fve', 'FvH4_1g27500' => 'fve', 'FvH4_3g09321' => 'fve', 'FvH4_3g29660' => 'fve', 'FvH4_6g18110' => 'fve', 'Glyma.03G192100' => 'gma', 'Glyma.10G202700' => 'gma', 'Glyma.11G188000' => 'gma', 'Glyma.12G086500' => 'gma', 'Glyma.19G192600' => 'gma', 'Glyma.20G187600' => 'gma', 'Gohir.A01G208000' => 'ghi', 'Gohir.A04G026850' => 'ghi', 'Gohir.A07G108100' => 'ghi', 'Gohir.A09G094100' => 'ghi', 'Gohir.A09G137500' => 'ghi', 'Gohir.D01G197400' => 'ghi', 'Gohir.D07G111900' => 'ghi', 'Gohir.D09G093700' => 'ghi', 'Gohir.D09G137100' => 'ghi', 'Gorai.001G120300' => 'gra', 'Gorai.002G241500' => 'gra', 'Gorai.006G110300' => 'gra', 'Gorai.006G157400' => 'gra', 'GSVIVG01031383001' => 'vvi', 'GSVIVG01033798001' => 'vvi', 'GSVIVG01034739001' => 'vvi', 'HanXRQChr04g0094641' => 'han', 'HanXRQChr05g0146841' => 'han', 'HanXRQChr07g0197791' => 'han', 'HanXRQChr08g0217871' => 'han', 'HanXRQChr11g0351201' => 'han', 'HanXRQChr12g0380951' => 'han', 'HanXRQChr15g0491581' => 'han', 'HanXRQChr15g0491981' => 'han', 'Haze_02591' => 'cav', 'Haze_19559' => 'cav', 'Haze_23438' => 'cav', 'Hma1.2p1_0084F.1_g043370' => 'hma', 'Hma1.2p1_0246F.1_g101750' => 'hma', 'Hma1.2p1_0352F.1_g132990' => 'hma', 'Hma1.2p1_0646F.1_g194990' => 'hma', 'HPP92_005461' => 'vpl', 'Hund04040' => 'sun', 'Hund18733' => 'sun', 'Hund19283' => 'sun', 'Lalb_Chr02g0151421' => 'lal', 'Lalb_Chr19g0136711' => 'lal', 'Lalb_Chr20g0112121' => 'lal', 'Lalb_Chr25g0288601' => 'lal', 'Lj1g0019636' => 'lja', 'Lj2A991T87' => 'lonja', 'Lj2C131G2' => 'lonja', 'Lj2C29T21' => 'lonja', 'Lj3A1002G51' => 'lonja', 'Lj3g0001526' => 'lja', 'Lj5g0018470' => 'lja', 'Lsat_1_v5_gn_0_7361' => 'lsa', 'Lsat_1_v5_gn_1_48540' => 'lsa', 'Lsat_1_v5_gn_2_95641' => 'lsa', 'Lsat_1_v5_gn_6_41721' => 'lsa', 'Lsat_1_v5_gn_6_70780' => 'lsa', 'Manes.04G007200' => 'mes', 'Manes.07G089500' => 'mes', 'Manes.08G022200' => 'mes', 'Manes.10G057100' => 'mes', 'Manes.11G158800' => 'mes', 'Mapoly0038s0078' => 'mpo', 'MBI01_g05551_MAGBIO' => 'mbi', 'MD02G1248700' => 'mdo', 'MD02G1248800' => 'mdo', 'MD03G1136300' => 'mdo', 'MD07G1067500' => 'mdo', 'MD11G1158600' => 'mdo', 'MD12G1019800' => 'mdo', 'MD12G1020200' => 'mdo', 'MD14G1017400' => 'mdo', 'Medtr1g492930' => 'mtr', 'Medtr2g085025' => 'mtr', 'Medtr7g104020' => 'mtr', 'MELO3C004756.2' => 'cme', 'MELO3C009443.2' => 'cme', 'MELO3C012362.2' => 'cme', 'MELO3C024522.2' => 'cme', 'Migut.F00895' => 'egut', 'Migut.F01642' => 'egut', 'Migut.J00976' => 'egut', 'Migut.N02509' => 'egut', 'MSTRG.17720' => 'ama', 'MSTRG.18737' => 'ama', 'MSTRG.19237' => 'ama', 'MSTRG.27523' => 'ama', 'MSTRG.5815' => 'ama', 'MSTRG.9108' => 'ama', 'Nitab4.5_0000132g0090' => 'nta', 'Nitab4.5_0000962g0030' => 'nta', 'Nitab4.5_0000963g0040' => 'nta', 'Nitab4.5_0003454g0030' => 'nta', 'Nitab4.5_0003541g0050' => 'nta', 'Nitab4.5_0005390g0050' => 'nta', 'Nitab4.5_0006089g0030' => 'nta', 'Nitab4.5_0022552g0010' => 'nta', 'Nn2g14049' => 'nnu', 'Nn6g35015' => 'nnu', 'Oeu018723.1' => 'oeu', 'Oeu030499.1' => 'oeu', 'Oeu032418.1' => 'oeu', 'Oeu039816.1' => 'oeu', 'Oeu040529.1' => 'oeu', 'Oeu042278.1' => 'oeu', 'Oeu050192.1' => 'oeu', 'Oeu050193.1' => 'oeu', 'Oeu052893.1' => 'oeu', 'Oeu058279.1' => 'oeu', 'Os02g0528100' => 'osa', 'Os04g0408600' => 'osa', 'Peaxi162Scf00002g05425' => 'pax', 'Peaxi162Scf00068g00034' => 'pax', 'Peaxi162Scf00163g00217' => 'pax', 'Peaxi162Scf00244g01120' => 'pax', 'PGR004G1543' => 'pgr', 'PGR044G2729' => 'pgr', 'PGR102G0613' => 'pgr', 'PGR142G1757' => 'pgr', 'PGSC0003DMG400002711' => 'stu', 'PGSC0003DMG400019496' => 'stu', 'PGSC0003DMG400026542' => 'stu', 'PGSC0003DMG400028170' => 'stu', 'Phvul.001G187400' => 'pvu', 'Phvul.007G104200' => 'pvu', 'Phvul.011G091600' => 'pvu', 'Potri.004G186900' => 'ptr', 'Potri.006G115400' => 'ptr', 'Potri.009G147500' => 'ptr', 'Potri.010G235600' => 'ptr', 'Pp3c4_24280' => 'ppa', 'Prupe.2G084700' => 'ppe', 'Prupe.6G121000' => 'ppe', 'Prupe.7G115700' => 'ppe', 'Psat3g035200' => 'psa', 'Psat5g255800' => 'psa', 'Psat6g176880' => 'psa', 'PSO339G3783' => 'pso', 'PSO384G1686' => 'pso', 'PSO443G0050' => 'pso', 'QL01p013415' => 'qlo', 'QL04p042565' => 'qlo', 'QL04p042580' => 'qlo', 'QL07p040067' => 'qlo', 'RcHm_v2.0_Chr3g0472381' => 'rch', 'RcHm_v2.0_Chr3g0489011' => 'rch', 'RcHm_v2.0_Chr5g0055021' => 'rch', 'Rhsim03G0079200' => 'rsi', 'Rhsim03G0079800' => 'rsi', 'Rhsim04G0134900' => 'rsi', 'Rhsim13G0106700' => 'rsi', 'RhsimUnG0042300' => 'rsi', 'Sabra04G0125900' => 'sbr', 'Sabra06G0090300' => 'sbr', 'Sabra09G0113700' => 'sbr', 'Sabra09G0116200' => 'sbr', 'Sabra10G0182700' => 'sbr', 'SalBow3G0840' => 'sbo', 'SalBow3G4143' => 'sbo', 'SalBow3G4507' => 'sbo', 'SalBow6G2283' => 'sbo', 'SalBow6G4984' => 'sbo', 'Sc02g0001090' => 'sci', 'Sc05g0003410' => 'sci', 'Sc07g0005400' => 'sci', 'Sc12g0004260' => 'sci', 'Sed0001596' => 'sed', 'Sed0004160' => 'sed', 'Sed0008393' => 'sed', 'Sed0016219' => 'sed', 'Sed0025714' => 'sed', 'SGA_v2.0_scaffold15G07423' => 'sas', 'SGA_v2.0_scaffold27G11625' => 'sas', 'SGA_v2.0_scaffold4G02307' => 'sas', 'SGA_v2.0_scaffold62G21350' => 'sas', 'SGA_v2.0_scaffold710G53496' => 'sas', 'SGA_v2.0_scaffold71G23897' => 'sas', 'SGA_v2.0_scaffold75G24791' => 'sas', 'SGA_v2.0_scaffold83G26421' => 'sas', 'Solyc10g083520.2' => 'sly', 'Solyc11g007330.2' => 'sly', 'Solyc11g066970.3' => 'sly', 'Sopen09g003940' => 'spe', 'Sopen10g032990' => 'spe', 'Sopen11g003220' => 'spe', 'Sopen11g026690' => 'spe', 'Sp3g08320' => 'spa', 'Sp4g10570' => 'spa', 'Sp4g18700' => 'spa', 'Sp4g18710' => 'spa', 'Sp5g09410' => 'spa', 'Sp5g09440' => 'spa', 'Sp6g39070' => 'spa', 'TAR369G0967' => 'tar', 'TAR623G0765' => 'tar', 'TAR633G0289' => 'tar', 'TAR636G3651' => 'tar', 'THA.LOC104800548' => 'tha', 'THA.LOC104823107' => 'tha', 'THA.LOC104823227' => 'tha', 'THA.LOC104823463' => 'tha', 'THA.LOC104826930' => 'tha', 'THA.LOC104827507' => 'tha', 'Thecc.05G083200' => 'tca', 'Thecc.09G289800' => 'tca', 'Thecc.10G104800' => 'tca', 'Thhalv10010763m.g' => 'esa', 'Thhalv10010775m.g' => 'esa', 'Thhalv10014828m.g' => 'esa', 'Thhalv10017290m.g' => 'esa', 'Thhalv10017323m.g' => 'esa', 'Thhalv10021627m.g' => 'esa', 'TPR.G23399' => 'tpr', 'TPR.G2502' => 'tpr', 'TPR.G25372' => 'tpr', 'TPR.G8933' => 'tpr', 'TWI38G2326' => 'twi', 'TWI53G1386' => 'twi', 'TWI75G0553' => 'twi', 'TWI77G0148' => 'twi', 'TWI79G1399' => 'twi', 'unitig_26.g9246' => 'ugi', 'unitig_578.g15764' => 'ugi', 'unitig_736.g22529' => 'ugi', 'unitig_744.g24692' => 'ugi', 'unitig_749.g14290' => 'ugi', 'vmacro03287' => 'vma', 'vmacro07381' => 'vma', 'vmacro08823' => 'vma', 'vmacro10291' => 'vma', 'VMungo0720G2072' => 'vmu', 'VMungo1383G3133' => 'vmu', 'Zm00001eb242600' => 'zma', 'Zm00001eb421850' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001317' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001317' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001317' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001317' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001317', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '476', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p20120' => 'bna', 'A03p20130' => 'bna', 'A03p35740' => 'bna', 'A04p21100' => 'bna', 'A04p27920' => 'bna', 'A04p27930' => 'bna', 'A05p18350' => 'bna', 'A05p39040' => 'bna', 'A07p18360' => 'bna', 'A07p21270' => 'bna', 'A07p21310' => 'bna', 'A08p15900' => 'bna', 'A09p21500' => 'bna', 'A09p43440' => 'bna', 'A09p45980' => 'bna', 'A09p68960' => 'bna', 'A10p32440' => 'bna', 'Aa31LG10G7830' => 'aar', 'Aa31LG10G8120' => 'aar', 'Aa31LG1G21570' => 'aar', 'Aa31LG3G2480' => 'aar', 'Aa31LG4G12450' => 'aar', 'Aa31LG5G21590' => 'aar', 'Aa31LG5G21600' => 'aar', 'Aa31LG5G8250' => 'aar', 'Aa31sc27G60' => 'aar', 'Aa31sc95G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3606' => 'aag', 'Actinidia05450' => 'ach', 'Actinidia10396' => 'ach', 'Actinidia24185' => 'ach', 'Actinidia31284' => 'ach', 'Actinidia34710' => 'ach', 'Ah.08g210840' => 'amhyb', 'Ah.08g216040' => 'amhyb', 'AL3G21270' => 'aly', 'AL4G22560' => 'aly', 'AL4G32510' => 'aly', 'AL4G32590' => 'aly', 'AL5G33680' => 'aly', 'AL5G33710' => 'aly', 'AL6G13170' => 'aly', 'Aqoxy1G00824' => 'aox', 'Aqoxy2G01358' => 'aox', 'Aqoxy4G02859' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3U3PFL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.95H5CE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4KAB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC2QWC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFPL44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6BTHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR4K5D' => 'arhy', 'AT2G27740' => 'ath', 'AT2G36355' => 'ath', 'AT2G36410' => 'ath', 'AT3G09980' => 'ath', 'AT3G52900' => 'ath', 'AT3G52920' => 'ath', 'AT5G03660' => 'ath', 'ATR0820G174' => 'atr', 'Atru.chr3.3357' => 'acertr', 'Atru.chr8.1614' => 'acertr', 'AUR62009804' => 'cqu', 'AUR62033550' => 'cqu', 'AUR62038116' => 'cqu', 'AUR62043077' => 'cqu', 'AUR62043109' => 'cqu', 'BcaB01g00328' => 'bca', 'BcaB01g00329' => 'bca', 'BcaB01g00331' => 'bca', 'BcaB01g03839' => 'bca', 'BcaB01g03840' => 'bca', 'BcaB02g07804' => 'bca', 'BcaB02g10111' => 'bca', 'BcaB02g10112' => 'bca', 'BcaB03g11579' => 'bca', 'BcaB06g28937' => 'bca', 'BcaB06g28938' => 'bca', 'BcaC01g04255' => 'bca', 'BcaC01g05659' => 'bca', 'BcaC01g05660' => 'bca', 'BcaC02g07595' => 'bca', 'BcaC02g07596' => 'bca', 'BcaC02g07599' => 'bca', 'BcaC02g08233' => 'bca', 'BcaC02g10902' => 'bca', 'BcaC05g26952' => 'bca', 'BcaC05g29725' => 'bca', 'BcaC06g32075' => 'bca', 'BcaC06g34382' => 'bca', 'BcaC07g39653' => 'bca', 'BcaC07g39655' => 'bca', 'BcaC08g44604' => 'bca', 'BcaC08g44609' => 'bca', 'BcaNung04563' => 'bca', 'BolC3t14751H' => 'bol', 'BolC3t14752H' => 'bol', 'BolC3t16612H' => 'bol', 'BolC4t23885H' => 'bol', 'BolC4t28022H' => 'bol', 'BolC4t28023H' => 'bol', 'BolC5t31527H' => 'bol', 'BolC5t34463H' => 'bol', 'BolC6t37260H' => 'bol', 'BolC6t37265H' => 'bol', 'BolC8t50430H' => 'bol', 'BolC9t60061H' => 'bol', 'BraA03t11262Z' => 'bra', 'BraA03t11263Z' => 'bra', 'BraA03t12748Z' => 'bra', 'BraA04t17679Z' => 'bra', 'BraA04t18283Z' => 'bra', 'BraA05t22696Z' => 'bra', 'BraA07t29552Z' => 'bra', 'BraA07t29815Z' => 'bra', 'BraA07t29818Z' => 'bra', 'BraA09t37749Z' => 'bra', 'BraA09t40061Z' => 'bra', 'BraA10t45284Z' => 'bra', 'C02p63920' => 'bna', 'C03p23570' => 'bna', 'C03p23580' => 'bna', 'C03p43410' => 'bna', 'C03p83960' => 'bna', 'C04p04350' => 'bna', 'C04p23920' => 'bna', 'C05p28000' => 'bna', 'C05p58060' => 'bna', 'C06p20770' => 'bna', 'C06p20800' => 'bna', 'C08p28170' => 'bna', 'C09p73260' => 'bna', 'CAN.G1138.24' => 'can', 'CAN.G534.17' => 'can', 'CAN.G644.20' => 'can', 'CAN.G824.17' => 'can', 'CANSAT54G0979' => 'cansat', 'CANSAT56G2006' => 'cansat', 'CANSAT80G0207' => 'cansat', 'CARHR084490' => 'chi', 'CARHR120440' => 'chi', 'CARHR130650' => 'chi', 'CARHR130710' => 'chi', 'CARHR162780' => 'chi', 'CARHR162800' => 'chi', 'CARHR209640' => 'chi', 'Carub.0003s0908' => 'cru', 'Carub.0004s0849' => 'cru', 'Carub.0004s1814' => 'cru', 'Carub.0004s1821' => 'cru', 'Carub.0004s1822' => 'cru', 'Carub.0005s1937' => 'cru', 'Carub.0005s1940' => 'cru', 'Carub.0006s0257' => 'cru', 'Ca_01672_v3' => 'car', 'Ca_08972_v3' => 'car', 'Ca_10500_v3' => 'car', 'Cc01_g09640' => 'ccan', 'Cc02_g09990' => 'ccan', 'Cc06_g05380' => 'ccan', 'Cfa010072' => 'cfa', 'Cfa011239' => 'cfa', 'Cfa016558' => 'cfa', 'Ciclev10012928m.g' => 'ccl', 'Ciclev10029402m.g' => 'ccl', 'Ciclev10032972m.g' => 'ccl', 'CiPaw.09G009700' => 'cil', 'CiPaw.10G006400' => 'cil', 'CiPaw.13G037300' => 'cil', 'CiPaw.13G139900' => 'cil', 'CiPaw.14G029500' => 'cil', 'CiPaw.14G102900' => 'cil', 'ClCG01G012520' => 'cla', 'ClCG04G009830' => 'cla', 'ClCG05G021660' => 'cla', 'ClCG10G019230' => 'cla', 'COL.COLO4_19956' => 'col', 'COL.COLO4_20108' => 'col', 'COL.COLO4_29798' => 'col', 'Cpa.g.sc19.16' => 'cpa', 'Cpa.g.sc47.78' => 'cpa', 'Cpa.g.sc5.64' => 'cpa', 'CsaV3_1G014610' => 'csa', 'CsaV3_3G036960' => 'csa', 'CsaV3_5G035610' => 'csa', 'CsaV3_6G040460' => 'csa', 'CsaV3_7G016250' => 'csa', 'CSS0010573' => 'camsi', 'CSS0014590' => 'camsi', 'CSS0016769' => 'camsi', 'CSS0040261' => 'camsi', 'DCAR_003295' => 'dca', 'DCAR_007745' => 'dca', 'DCAR_009138' => 'dca', 'DCAR_010376' => 'dca', 'DCAR_013368' => 'dca', 'Dinv01490' => 'din', 'Dinv19840' => 'din', 'Dinv20807' => 'din', 'Dinv20808' => 'din', 'Dinv21243' => 'din', 'Dinv29437' => 'din', 'Dinv42584' => 'din', 'Duzib093G0422' => 'dzi', 'Duzib106G1466' => 'dzi', 'Duzib114G0983' => 'dzi', 'Duzib128G1404' => 'dzi', 'Duzib150G1320' => 'dzi', 'Duzib168G1030' => 'dzi', 'Duzib170G1003' => 'dzi', 'ECA232G3340' => 'eca', 'ECA233G0175' => 'eca', 'ECA233G0586' => 'eca', 'ECA238G4172' => 'eca', 'ECA248G0645' => 'eca', 'EL10Ac7g15782' => 'bvu', 'EL10Ac7g16971' => 'bvu', 'Eucgr.A01535' => 'egr', 'Eucgr.B03885' => 'egr', 'Eucgr.I00610' => 'egr', 'Eucgr.I00611' => 'egr', 'Eucgr.I00613' => 'egr', 'Eucgr.I00618' => 'egr', 'Eucgr.I01679' => 'egr', 'Eucgr.J01003' => 'egr', 'Eucgr.K02066' => 'egr', 'FAN05G0604' => 'fan', 'FAN05G3700' => 'fan', 'FAN09G2556' => 'fan', 'FAN11G2257' => 'fan', 'FAN19G1423' => 'fan', 'FAN21G3263' => 'fan', 'FAN23G1439' => 'fan', 'FAN23G2475' => 'fan', 'FAN25G2980' => 'fan', 'FAN26G3147' => 'fan', 'FAN28G0119' => 'fan', 'FvH4_1g24952' => 'fve', 'FvH4_1g27500' => 'fve', 'FvH4_3g09321' => 'fve', 'FvH4_3g29660' => 'fve', 'FvH4_6g18110' => 'fve', 'Glyma.03G192100' => 'gma', 'Glyma.10G202700' => 'gma', 'Glyma.11G188000' => 'gma', 'Glyma.12G086500' => 'gma', 'Glyma.19G192600' => 'gma', 'Glyma.20G187600' => 'gma', 'Gohir.A01G208000' => 'ghi', 'Gohir.A04G026850' => 'ghi', 'Gohir.A07G108100' => 'ghi', 'Gohir.A09G094100' => 'ghi', 'Gohir.A09G137500' => 'ghi', 'Gohir.D01G197400' => 'ghi', 'Gohir.D07G111900' => 'ghi', 'Gohir.D09G093700' => 'ghi', 'Gohir.D09G137100' => 'ghi', 'Gorai.001G120300' => 'gra', 'Gorai.002G241500' => 'gra', 'Gorai.006G110300' => 'gra', 'Gorai.006G157400' => 'gra', 'GSVIVG01031383001' => 'vvi', 'GSVIVG01033798001' => 'vvi', 'GSVIVG01034739001' => 'vvi', 'HanXRQChr04g0094641' => 'han', 'HanXRQChr05g0146841' => 'han', 'HanXRQChr07g0197791' => 'han', 'HanXRQChr08g0217871' => 'han', 'HanXRQChr11g0351201' => 'han', 'HanXRQChr12g0380951' => 'han', 'HanXRQChr15g0491581' => 'han', 'HanXRQChr15g0491981' => 'han', 'Haze_02591' => 'cav', 'Haze_19559' => 'cav', 'Haze_23438' => 'cav', 'Hma1.2p1_0084F.1_g043370' => 'hma', 'Hma1.2p1_0246F.1_g101750' => 'hma', 'Hma1.2p1_0352F.1_g132990' => 'hma', 'Hma1.2p1_0646F.1_g194990' => 'hma', 'HPP92_005461' => 'vpl', 'Hund04040' => 'sun', 'Hund18733' => 'sun', 'Hund19283' => 'sun', 'Lalb_Chr02g0151421' => 'lal', 'Lalb_Chr19g0136711' => 'lal', 'Lalb_Chr20g0112121' => 'lal', 'Lalb_Chr25g0288601' => 'lal', 'Lj1g0019636' => 'lja', 'Lj2A991T87' => 'lonja', 'Lj2C131G2' => 'lonja', 'Lj2C29T21' => 'lonja', 'Lj3A1002G51' => 'lonja', 'Lj3g0001526' => 'lja', 'Lj5g0018470' => 'lja', 'Lsat_1_v5_gn_0_7361' => 'lsa', 'Lsat_1_v5_gn_1_48540' => 'lsa', 'Lsat_1_v5_gn_2_95641' => 'lsa', 'Lsat_1_v5_gn_6_41721' => 'lsa', 'Lsat_1_v5_gn_6_70780' => 'lsa', 'Manes.04G007200' => 'mes', 'Manes.07G089500' => 'mes', 'Manes.08G022200' => 'mes', 'Manes.10G057100' => 'mes', 'Manes.11G158800' => 'mes', 'Mapoly0038s0078' => 'mpo', 'MBI01_g05551_MAGBIO' => 'mbi', 'MD02G1248700' => 'mdo', 'MD02G1248800' => 'mdo', 'MD03G1136300' => 'mdo', 'MD07G1067500' => 'mdo', 'MD11G1158600' => 'mdo', 'MD12G1019800' => 'mdo', 'MD12G1020200' => 'mdo', 'MD14G1017400' => 'mdo', 'Medtr1g492930' => 'mtr', 'Medtr2g085025' => 'mtr', 'Medtr7g104020' => 'mtr', 'MELO3C004756.2' => 'cme', 'MELO3C009443.2' => 'cme', 'MELO3C012362.2' => 'cme', 'MELO3C024522.2' => 'cme', 'Migut.F00895' => 'egut', 'Migut.F01642' => 'egut', 'Migut.J00976' => 'egut', 'Migut.N02509' => 'egut', 'MSTRG.17720' => 'ama', 'MSTRG.18737' => 'ama', 'MSTRG.19237' => 'ama', 'MSTRG.27523' => 'ama', 'MSTRG.5815' => 'ama', 'MSTRG.9108' => 'ama', 'Nitab4.5_0000132g0090' => 'nta', 'Nitab4.5_0000962g0030' => 'nta', 'Nitab4.5_0000963g0040' => 'nta', 'Nitab4.5_0003454g0030' => 'nta', 'Nitab4.5_0003541g0050' => 'nta', 'Nitab4.5_0005390g0050' => 'nta', 'Nitab4.5_0006089g0030' => 'nta', 'Nitab4.5_0022552g0010' => 'nta', 'Nn2g14049' => 'nnu', 'Nn6g35015' => 'nnu', 'Oeu018723.1' => 'oeu', 'Oeu030499.1' => 'oeu', 'Oeu032418.1' => 'oeu', 'Oeu039816.1' => 'oeu', 'Oeu040529.1' => 'oeu', 'Oeu042278.1' => 'oeu', 'Oeu050192.1' => 'oeu', 'Oeu050193.1' => 'oeu', 'Oeu052893.1' => 'oeu', 'Oeu058279.1' => 'oeu', 'Os02g0528100' => 'osa', 'Os04g0408600' => 'osa', 'Peaxi162Scf00002g05425' => 'pax', 'Peaxi162Scf00068g00034' => 'pax', 'Peaxi162Scf00163g00217' => 'pax', 'Peaxi162Scf00244g01120' => 'pax', 'PGR004G1543' => 'pgr', 'PGR044G2729' => 'pgr', 'PGR102G0613' => 'pgr', 'PGR142G1757' => 'pgr', 'PGSC0003DMG400002711' => 'stu', 'PGSC0003DMG400019496' => 'stu', 'PGSC0003DMG400026542' => 'stu', 'PGSC0003DMG400028170' => 'stu', 'Phvul.001G187400' => 'pvu', 'Phvul.007G104200' => 'pvu', 'Phvul.011G091600' => 'pvu', 'Potri.004G186900' => 'ptr', 'Potri.006G115400' => 'ptr', 'Potri.009G147500' => 'ptr', 'Potri.010G235600' => 'ptr', 'Pp3c4_24280' => 'ppa', 'Prupe.2G084700' => 'ppe', 'Prupe.6G121000' => 'ppe', 'Prupe.7G115700' => 'ppe', 'Psat3g035200' => 'psa', 'Psat5g255800' => 'psa', 'Psat6g176880' => 'psa', 'PSO339G3783' => 'pso', 'PSO384G1686' => 'pso', 'PSO443G0050' => 'pso', 'QL01p013415' => 'qlo', 'QL04p042565' => 'qlo', 'QL04p042580' => 'qlo', 'QL07p040067' => 'qlo', 'RcHm_v2.0_Chr3g0472381' => 'rch', 'RcHm_v2.0_Chr3g0489011' => 'rch', 'RcHm_v2.0_Chr5g0055021' => 'rch', 'Rhsim03G0079200' => 'rsi', 'Rhsim03G0079800' => 'rsi', 'Rhsim04G0134900' => 'rsi', 'Rhsim13G0106700' => 'rsi', 'RhsimUnG0042300' => 'rsi', 'Sabra04G0125900' => 'sbr', 'Sabra06G0090300' => 'sbr', 'Sabra09G0113700' => 'sbr', 'Sabra09G0116200' => 'sbr', 'Sabra10G0182700' => 'sbr', 'SalBow3G0840' => 'sbo', 'SalBow3G4143' => 'sbo', 'SalBow3G4507' => 'sbo', 'SalBow6G2283' => 'sbo', 'SalBow6G4984' => 'sbo', 'Sc02g0001090' => 'sci', 'Sc05g0003410' => 'sci', 'Sc07g0005400' => 'sci', 'Sc12g0004260' => 'sci', 'Sed0001596' => 'sed', 'Sed0004160' => 'sed', 'Sed0008393' => 'sed', 'Sed0016219' => 'sed', 'Sed0025714' => 'sed', 'SGA_v2.0_scaffold15G07423' => 'sas', 'SGA_v2.0_scaffold27G11625' => 'sas', 'SGA_v2.0_scaffold4G02307' => 'sas', 'SGA_v2.0_scaffold62G21350' => 'sas', 'SGA_v2.0_scaffold710G53496' => 'sas', 'SGA_v2.0_scaffold71G23897' => 'sas', 'SGA_v2.0_scaffold75G24791' => 'sas', 'SGA_v2.0_scaffold83G26421' => 'sas', 'Solyc10g083520.2' => 'sly', 'Solyc11g007330.2' => 'sly', 'Solyc11g066970.3' => 'sly', 'Sopen09g003940' => 'spe', 'Sopen10g032990' => 'spe', 'Sopen11g003220' => 'spe', 'Sopen11g026690' => 'spe', 'Sp3g08320' => 'spa', 'Sp4g10570' => 'spa', 'Sp4g18700' => 'spa', 'Sp4g18710' => 'spa', 'Sp5g09410' => 'spa', 'Sp5g09440' => 'spa', 'Sp6g39070' => 'spa', 'TAR369G0967' => 'tar', 'TAR623G0765' => 'tar', 'TAR633G0289' => 'tar', 'TAR636G3651' => 'tar', 'THA.LOC104800548' => 'tha', 'THA.LOC104823107' => 'tha', 'THA.LOC104823227' => 'tha', 'THA.LOC104823463' => 'tha', 'THA.LOC104826930' => 'tha', 'THA.LOC104827507' => 'tha', 'Thecc.05G083200' => 'tca', 'Thecc.09G289800' => 'tca', 'Thecc.10G104800' => 'tca', 'Thhalv10010763m.g' => 'esa', 'Thhalv10010775m.g' => 'esa', 'Thhalv10014828m.g' => 'esa', 'Thhalv10017290m.g' => 'esa', 'Thhalv10017323m.g' => 'esa', 'Thhalv10021627m.g' => 'esa', 'TPR.G23399' => 'tpr', 'TPR.G2502' => 'tpr', 'TPR.G25372' => 'tpr', 'TPR.G8933' => 'tpr', 'TWI38G2326' => 'twi', 'TWI53G1386' => 'twi', 'TWI75G0553' => 'twi', 'TWI77G0148' => 'twi', 'TWI79G1399' => 'twi', 'unitig_26.g9246' => 'ugi', 'unitig_578.g15764' => 'ugi', 'unitig_736.g22529' => 'ugi', 'unitig_744.g24692' => 'ugi', 'unitig_749.g14290' => 'ugi', 'vmacro03287' => 'vma', 'vmacro07381' => 'vma', 'vmacro08823' => 'vma', 'vmacro10291' => 'vma', 'VMungo0720G2072' => 'vmu', 'VMungo1383G3133' => 'vmu', 'Zm00001eb242600' => 'zma', 'Zm00001eb421850' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001317', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001317' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001317', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '476', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001317' ) ), 'genes' => array( 'A03p20120' => 'bna', 'A03p20130' => 'bna', 'A03p35740' => 'bna', 'A04p21100' => 'bna', 'A04p27920' => 'bna', 'A04p27930' => 'bna', 'A05p18350' => 'bna', 'A05p39040' => 'bna', 'A07p18360' => 'bna', 'A07p21270' => 'bna', 'A07p21310' => 'bna', 'A08p15900' => 'bna', 'A09p21500' => 'bna', 'A09p43440' => 'bna', 'A09p45980' => 'bna', 'A09p68960' => 'bna', 'A10p32440' => 'bna', 'Aa31LG10G7830' => 'aar', 'Aa31LG10G8120' => 'aar', 'Aa31LG1G21570' => 'aar', 'Aa31LG3G2480' => 'aar', 'Aa31LG4G12450' => 'aar', 'Aa31LG5G21590' => 'aar', 'Aa31LG5G21600' => 'aar', 'Aa31LG5G8250' => 'aar', 'Aa31sc27G60' => 'aar', 'Aa31sc95G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3606' => 'aag', 'Actinidia05450' => 'ach', 'Actinidia10396' => 'ach', 'Actinidia24185' => 'ach', 'Actinidia31284' => 'ach', 'Actinidia34710' => 'ach', 'Ah.08g210840' => 'amhyb', 'Ah.08g216040' => 'amhyb', 'AL3G21270' => 'aly', 'AL4G22560' => 'aly', 'AL4G32510' => 'aly', 'AL4G32590' => 'aly', 'AL5G33680' => 'aly', 'AL5G33710' => 'aly', 'AL6G13170' => 'aly', 'Aqoxy1G00824' => 'aox', 'Aqoxy2G01358' => 'aox', 'Aqoxy4G02859' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3U3PFL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.95H5CE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4KAB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC2QWC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFPL44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6BTHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR4K5D' => 'arhy', 'AT2G27740' => 'ath', 'AT2G36355' => 'ath', 'AT2G36410' => 'ath', 'AT3G09980' => 'ath', 'AT3G52900' => 'ath', 'AT3G52920' => 'ath', 'AT5G03660' => 'ath', 'ATR0820G174' => 'atr', 'Atru.chr3.3357' => 'acertr', 'Atru.chr8.1614' => 'acertr', 'AUR62009804' => 'cqu', 'AUR62033550' => 'cqu', 'AUR62038116' => 'cqu', 'AUR62043077' => 'cqu', 'AUR62043109' => 'cqu', 'BcaB01g00328' => 'bca', 'BcaB01g00329' => 'bca', 'BcaB01g00331' => 'bca', 'BcaB01g03839' => 'bca', 'BcaB01g03840' => 'bca', 'BcaB02g07804' => 'bca', 'BcaB02g10111' => 'bca', 'BcaB02g10112' => 'bca', 'BcaB03g11579' => 'bca', 'BcaB06g28937' => 'bca', 'BcaB06g28938' => 'bca', 'BcaC01g04255' => 'bca', 'BcaC01g05659' => 'bca', 'BcaC01g05660' => 'bca', 'BcaC02g07595' => 'bca', 'BcaC02g07596' => 'bca', 'BcaC02g07599' => 'bca', 'BcaC02g08233' => 'bca', 'BcaC02g10902' => 'bca', 'BcaC05g26952' => 'bca', 'BcaC05g29725' => 'bca', 'BcaC06g32075' => 'bca', 'BcaC06g34382' => 'bca', 'BcaC07g39653' => 'bca', 'BcaC07g39655' => 'bca', 'BcaC08g44604' => 'bca', 'BcaC08g44609' => 'bca', 'BcaNung04563' => 'bca', 'BolC3t14751H' => 'bol', 'BolC3t14752H' => 'bol', 'BolC3t16612H' => 'bol', 'BolC4t23885H' => 'bol', 'BolC4t28022H' => 'bol', 'BolC4t28023H' => 'bol', 'BolC5t31527H' => 'bol', 'BolC5t34463H' => 'bol', 'BolC6t37260H' => 'bol', 'BolC6t37265H' => 'bol', 'BolC8t50430H' => 'bol', 'BolC9t60061H' => 'bol', 'BraA03t11262Z' => 'bra', 'BraA03t11263Z' => 'bra', 'BraA03t12748Z' => 'bra', 'BraA04t17679Z' => 'bra', 'BraA04t18283Z' => 'bra', 'BraA05t22696Z' => 'bra', 'BraA07t29552Z' => 'bra', 'BraA07t29815Z' => 'bra', 'BraA07t29818Z' => 'bra', 'BraA09t37749Z' => 'bra', 'BraA09t40061Z' => 'bra', 'BraA10t45284Z' => 'bra', 'C02p63920' => 'bna', 'C03p23570' => 'bna', 'C03p23580' => 'bna', 'C03p43410' => 'bna', 'C03p83960' => 'bna', 'C04p04350' => 'bna', 'C04p23920' => 'bna', 'C05p28000' => 'bna', 'C05p58060' => 'bna', 'C06p20770' => 'bna', 'C06p20800' => 'bna', 'C08p28170' => 'bna', 'C09p73260' => 'bna', 'CAN.G1138.24' => 'can', 'CAN.G534.17' => 'can', 'CAN.G644.20' => 'can', 'CAN.G824.17' => 'can', 'CANSAT54G0979' => 'cansat', 'CANSAT56G2006' => 'cansat', 'CANSAT80G0207' => 'cansat', 'CARHR084490' => 'chi', 'CARHR120440' => 'chi', 'CARHR130650' => 'chi', 'CARHR130710' => 'chi', 'CARHR162780' => 'chi', 'CARHR162800' => 'chi', 'CARHR209640' => 'chi', 'Carub.0003s0908' => 'cru', 'Carub.0004s0849' => 'cru', 'Carub.0004s1814' => 'cru', 'Carub.0004s1821' => 'cru', 'Carub.0004s1822' => 'cru', 'Carub.0005s1937' => 'cru', 'Carub.0005s1940' => 'cru', 'Carub.0006s0257' => 'cru', 'Ca_01672_v3' => 'car', 'Ca_08972_v3' => 'car', 'Ca_10500_v3' => 'car', 'Cc01_g09640' => 'ccan', 'Cc02_g09990' => 'ccan', 'Cc06_g05380' => 'ccan', 'Cfa010072' => 'cfa', 'Cfa011239' => 'cfa', 'Cfa016558' => 'cfa', 'Ciclev10012928m.g' => 'ccl', 'Ciclev10029402m.g' => 'ccl', 'Ciclev10032972m.g' => 'ccl', 'CiPaw.09G009700' => 'cil', 'CiPaw.10G006400' => 'cil', 'CiPaw.13G037300' => 'cil', 'CiPaw.13G139900' => 'cil', 'CiPaw.14G029500' => 'cil', 'CiPaw.14G102900' => 'cil', 'ClCG01G012520' => 'cla', 'ClCG04G009830' => 'cla', 'ClCG05G021660' => 'cla', 'ClCG10G019230' => 'cla', 'COL.COLO4_19956' => 'col', 'COL.COLO4_20108' => 'col', 'COL.COLO4_29798' => 'col', 'Cpa.g.sc19.16' => 'cpa', 'Cpa.g.sc47.78' => 'cpa', 'Cpa.g.sc5.64' => 'cpa', 'CsaV3_1G014610' => 'csa', 'CsaV3_3G036960' => 'csa', 'CsaV3_5G035610' => 'csa', 'CsaV3_6G040460' => 'csa', 'CsaV3_7G016250' => 'csa', 'CSS0010573' => 'camsi', 'CSS0014590' => 'camsi', 'CSS0016769' => 'camsi', 'CSS0040261' => 'camsi', 'DCAR_003295' => 'dca', 'DCAR_007745' => 'dca', 'DCAR_009138' => 'dca', 'DCAR_010376' => 'dca', 'DCAR_013368' => 'dca', 'Dinv01490' => 'din', 'Dinv19840' => 'din', 'Dinv20807' => 'din', 'Dinv20808' => 'din', 'Dinv21243' => 'din', 'Dinv29437' => 'din', 'Dinv42584' => 'din', 'Duzib093G0422' => 'dzi', 'Duzib106G1466' => 'dzi', 'Duzib114G0983' => 'dzi', 'Duzib128G1404' => 'dzi', 'Duzib150G1320' => 'dzi', 'Duzib168G1030' => 'dzi', 'Duzib170G1003' => 'dzi', 'ECA232G3340' => 'eca', 'ECA233G0175' => 'eca', 'ECA233G0586' => 'eca', 'ECA238G4172' => 'eca', 'ECA248G0645' => 'eca', 'EL10Ac7g15782' => 'bvu', 'EL10Ac7g16971' => 'bvu', 'Eucgr.A01535' => 'egr', 'Eucgr.B03885' => 'egr', 'Eucgr.I00610' => 'egr', 'Eucgr.I00611' => 'egr', 'Eucgr.I00613' => 'egr', 'Eucgr.I00618' => 'egr', 'Eucgr.I01679' => 'egr', 'Eucgr.J01003' => 'egr', 'Eucgr.K02066' => 'egr', 'FAN05G0604' => 'fan', 'FAN05G3700' => 'fan', 'FAN09G2556' => 'fan', 'FAN11G2257' => 'fan', 'FAN19G1423' => 'fan', 'FAN21G3263' => 'fan', 'FAN23G1439' => 'fan', 'FAN23G2475' => 'fan', 'FAN25G2980' => 'fan', 'FAN26G3147' => 'fan', 'FAN28G0119' => 'fan', 'FvH4_1g24952' => 'fve', 'FvH4_1g27500' => 'fve', 'FvH4_3g09321' => 'fve', 'FvH4_3g29660' => 'fve', 'FvH4_6g18110' => 'fve', 'Glyma.03G192100' => 'gma', 'Glyma.10G202700' => 'gma', 'Glyma.11G188000' => 'gma', 'Glyma.12G086500' => 'gma', 'Glyma.19G192600' => 'gma', 'Glyma.20G187600' => 'gma', 'Gohir.A01G208000' => 'ghi', 'Gohir.A04G026850' => 'ghi', 'Gohir.A07G108100' => 'ghi', 'Gohir.A09G094100' => 'ghi', 'Gohir.A09G137500' => 'ghi', 'Gohir.D01G197400' => 'ghi', 'Gohir.D07G111900' => 'ghi', 'Gohir.D09G093700' => 'ghi', 'Gohir.D09G137100' => 'ghi', 'Gorai.001G120300' => 'gra', 'Gorai.002G241500' => 'gra', 'Gorai.006G110300' => 'gra', 'Gorai.006G157400' => 'gra', 'GSVIVG01031383001' => 'vvi', 'GSVIVG01033798001' => 'vvi', 'GSVIVG01034739001' => 'vvi', 'HanXRQChr04g0094641' => 'han', 'HanXRQChr05g0146841' => 'han', 'HanXRQChr07g0197791' => 'han', 'HanXRQChr08g0217871' => 'han', 'HanXRQChr11g0351201' => 'han', 'HanXRQChr12g0380951' => 'han', 'HanXRQChr15g0491581' => 'han', 'HanXRQChr15g0491981' => 'han', 'Haze_02591' => 'cav', 'Haze_19559' => 'cav', 'Haze_23438' => 'cav', 'Hma1.2p1_0084F.1_g043370' => 'hma', 'Hma1.2p1_0246F.1_g101750' => 'hma', 'Hma1.2p1_0352F.1_g132990' => 'hma', 'Hma1.2p1_0646F.1_g194990' => 'hma', 'HPP92_005461' => 'vpl', 'Hund04040' => 'sun', 'Hund18733' => 'sun', 'Hund19283' => 'sun', 'Lalb_Chr02g0151421' => 'lal', 'Lalb_Chr19g0136711' => 'lal', 'Lalb_Chr20g0112121' => 'lal', 'Lalb_Chr25g0288601' => 'lal', 'Lj1g0019636' => 'lja', 'Lj2A991T87' => 'lonja', 'Lj2C131G2' => 'lonja', 'Lj2C29T21' => 'lonja', 'Lj3A1002G51' => 'lonja', 'Lj3g0001526' => 'lja', 'Lj5g0018470' => 'lja', 'Lsat_1_v5_gn_0_7361' => 'lsa', 'Lsat_1_v5_gn_1_48540' => 'lsa', 'Lsat_1_v5_gn_2_95641' => 'lsa', 'Lsat_1_v5_gn_6_41721' => 'lsa', 'Lsat_1_v5_gn_6_70780' => 'lsa', 'Manes.04G007200' => 'mes', 'Manes.07G089500' => 'mes', 'Manes.08G022200' => 'mes', 'Manes.10G057100' => 'mes', 'Manes.11G158800' => 'mes', 'Mapoly0038s0078' => 'mpo', 'MBI01_g05551_MAGBIO' => 'mbi', 'MD02G1248700' => 'mdo', 'MD02G1248800' => 'mdo', 'MD03G1136300' => 'mdo', 'MD07G1067500' => 'mdo', 'MD11G1158600' => 'mdo', 'MD12G1019800' => 'mdo', 'MD12G1020200' => 'mdo', 'MD14G1017400' => 'mdo', 'Medtr1g492930' => 'mtr', 'Medtr2g085025' => 'mtr', 'Medtr7g104020' => 'mtr', 'MELO3C004756.2' => 'cme', 'MELO3C009443.2' => 'cme', 'MELO3C012362.2' => 'cme', 'MELO3C024522.2' => 'cme', 'Migut.F00895' => 'egut', 'Migut.F01642' => 'egut', 'Migut.J00976' => 'egut', 'Migut.N02509' => 'egut', 'MSTRG.17720' => 'ama', 'MSTRG.18737' => 'ama', 'MSTRG.19237' => 'ama', 'MSTRG.27523' => 'ama', 'MSTRG.5815' => 'ama', 'MSTRG.9108' => 'ama', 'Nitab4.5_0000132g0090' => 'nta', 'Nitab4.5_0000962g0030' => 'nta', 'Nitab4.5_0000963g0040' => 'nta', 'Nitab4.5_0003454g0030' => 'nta', 'Nitab4.5_0003541g0050' => 'nta', 'Nitab4.5_0005390g0050' => 'nta', 'Nitab4.5_0006089g0030' => 'nta', 'Nitab4.5_0022552g0010' => 'nta', 'Nn2g14049' => 'nnu', 'Nn6g35015' => 'nnu', 'Oeu018723.1' => 'oeu', 'Oeu030499.1' => 'oeu', 'Oeu032418.1' => 'oeu', 'Oeu039816.1' => 'oeu', 'Oeu040529.1' => 'oeu', 'Oeu042278.1' => 'oeu', 'Oeu050192.1' => 'oeu', 'Oeu050193.1' => 'oeu', 'Oeu052893.1' => 'oeu', 'Oeu058279.1' => 'oeu', 'Os02g0528100' => 'osa', 'Os04g0408600' => 'osa', 'Peaxi162Scf00002g05425' => 'pax', 'Peaxi162Scf00068g00034' => 'pax', 'Peaxi162Scf00163g00217' => 'pax', 'Peaxi162Scf00244g01120' => 'pax', 'PGR004G1543' => 'pgr', 'PGR044G2729' => 'pgr', 'PGR102G0613' => 'pgr', 'PGR142G1757' => 'pgr', 'PGSC0003DMG400002711' => 'stu', 'PGSC0003DMG400019496' => 'stu', 'PGSC0003DMG400026542' => 'stu', 'PGSC0003DMG400028170' => 'stu', 'Phvul.001G187400' => 'pvu', 'Phvul.007G104200' => 'pvu', 'Phvul.011G091600' => 'pvu', 'Potri.004G186900' => 'ptr', 'Potri.006G115400' => 'ptr', 'Potri.009G147500' => 'ptr', 'Potri.010G235600' => 'ptr', 'Pp3c4_24280' => 'ppa', 'Prupe.2G084700' => 'ppe', 'Prupe.6G121000' => 'ppe', 'Prupe.7G115700' => 'ppe', 'Psat3g035200' => 'psa', 'Psat5g255800' => 'psa', 'Psat6g176880' => 'psa', 'PSO339G3783' => 'pso', 'PSO384G1686' => 'pso', 'PSO443G0050' => 'pso', 'QL01p013415' => 'qlo', 'QL04p042565' => 'qlo', 'QL04p042580' => 'qlo', 'QL07p040067' => 'qlo', 'RcHm_v2.0_Chr3g0472381' => 'rch', 'RcHm_v2.0_Chr3g0489011' => 'rch', 'RcHm_v2.0_Chr5g0055021' => 'rch', 'Rhsim03G0079200' => 'rsi', 'Rhsim03G0079800' => 'rsi', 'Rhsim04G0134900' => 'rsi', 'Rhsim13G0106700' => 'rsi', 'RhsimUnG0042300' => 'rsi', 'Sabra04G0125900' => 'sbr', 'Sabra06G0090300' => 'sbr', 'Sabra09G0113700' => 'sbr', 'Sabra09G0116200' => 'sbr', 'Sabra10G0182700' => 'sbr', 'SalBow3G0840' => 'sbo', 'SalBow3G4143' => 'sbo', 'SalBow3G4507' => 'sbo', 'SalBow6G2283' => 'sbo', 'SalBow6G4984' => 'sbo', 'Sc02g0001090' => 'sci', 'Sc05g0003410' => 'sci', 'Sc07g0005400' => 'sci', 'Sc12g0004260' => 'sci', 'Sed0001596' => 'sed', 'Sed0004160' => 'sed', 'Sed0008393' => 'sed', 'Sed0016219' => 'sed', 'Sed0025714' => 'sed', 'SGA_v2.0_scaffold15G07423' => 'sas', 'SGA_v2.0_scaffold27G11625' => 'sas', 'SGA_v2.0_scaffold4G02307' => 'sas', 'SGA_v2.0_scaffold62G21350' => 'sas', 'SGA_v2.0_scaffold710G53496' => 'sas', 'SGA_v2.0_scaffold71G23897' => 'sas', 'SGA_v2.0_scaffold75G24791' => 'sas', 'SGA_v2.0_scaffold83G26421' => 'sas', 'Solyc10g083520.2' => 'sly', 'Solyc11g007330.2' => 'sly', 'Solyc11g066970.3' => 'sly', 'Sopen09g003940' => 'spe', 'Sopen10g032990' => 'spe', 'Sopen11g003220' => 'spe', 'Sopen11g026690' => 'spe', 'Sp3g08320' => 'spa', 'Sp4g10570' => 'spa', 'Sp4g18700' => 'spa', 'Sp4g18710' => 'spa', 'Sp5g09410' => 'spa', 'Sp5g09440' => 'spa', 'Sp6g39070' => 'spa', 'TAR369G0967' => 'tar', 'TAR623G0765' => 'tar', 'TAR633G0289' => 'tar', 'TAR636G3651' => 'tar', 'THA.LOC104800548' => 'tha', 'THA.LOC104823107' => 'tha', 'THA.LOC104823227' => 'tha', 'THA.LOC104823463' => 'tha', 'THA.LOC104826930' => 'tha', 'THA.LOC104827507' => 'tha', 'Thecc.05G083200' => 'tca', 'Thecc.09G289800' => 'tca', 'Thecc.10G104800' => 'tca', 'Thhalv10010763m.g' => 'esa', 'Thhalv10010775m.g' => 'esa', 'Thhalv10014828m.g' => 'esa', 'Thhalv10017290m.g' => 'esa', 'Thhalv10017323m.g' => 'esa', 'Thhalv10021627m.g' => 'esa', 'TPR.G23399' => 'tpr', 'TPR.G2502' => 'tpr', 'TPR.G25372' => 'tpr', 'TPR.G8933' => 'tpr', 'TWI38G2326' => 'twi', 'TWI53G1386' => 'twi', 'TWI75G0553' => 'twi', 'TWI77G0148' => 'twi', 'TWI79G1399' => 'twi', 'unitig_26.g9246' => 'ugi', 'unitig_578.g15764' => 'ugi', 'unitig_736.g22529' => 'ugi', 'unitig_744.g24692' => 'ugi', 'unitig_749.g14290' => 'ugi', 'vmacro03287' => 'vma', 'vmacro07381' => 'vma', 'vmacro08823' => 'vma', 'vmacro10291' => 'vma', 'VMungo0720G2072' => 'vmu', 'VMungo1383G3133' => 'vmu', 'Zm00001eb242600' => 'zma', 'Zm00001eb421850' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001317' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001317' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001317' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001317' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001317', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '476', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p20120' => 'bna', 'A03p20130' => 'bna', 'A03p35740' => 'bna', 'A04p21100' => 'bna', 'A04p27920' => 'bna', 'A04p27930' => 'bna', 'A05p18350' => 'bna', 'A05p39040' => 'bna', 'A07p18360' => 'bna', 'A07p21270' => 'bna', 'A07p21310' => 'bna', 'A08p15900' => 'bna', 'A09p21500' => 'bna', 'A09p43440' => 'bna', 'A09p45980' => 'bna', 'A09p68960' => 'bna', 'A10p32440' => 'bna', 'Aa31LG10G7830' => 'aar', 'Aa31LG10G8120' => 'aar', 'Aa31LG1G21570' => 'aar', 'Aa31LG3G2480' => 'aar', 'Aa31LG4G12450' => 'aar', 'Aa31LG5G21590' => 'aar', 'Aa31LG5G21600' => 'aar', 'Aa31LG5G8250' => 'aar', 'Aa31sc27G60' => 'aar', 'Aa31sc95G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3606' => 'aag', 'Actinidia05450' => 'ach', 'Actinidia10396' => 'ach', 'Actinidia24185' => 'ach', 'Actinidia31284' => 'ach', 'Actinidia34710' => 'ach', 'Ah.08g210840' => 'amhyb', 'Ah.08g216040' => 'amhyb', 'AL3G21270' => 'aly', 'AL4G22560' => 'aly', 'AL4G32510' => 'aly', 'AL4G32590' => 'aly', 'AL5G33680' => 'aly', 'AL5G33710' => 'aly', 'AL6G13170' => 'aly', 'Aqoxy1G00824' => 'aox', 'Aqoxy2G01358' => 'aox', 'Aqoxy4G02859' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3U3PFL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.95H5CE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4KAB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC2QWC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFPL44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6BTHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR4K5D' => 'arhy', 'AT2G27740' => 'ath', 'AT2G36355' => 'ath', 'AT2G36410' => 'ath', 'AT3G09980' => 'ath', 'AT3G52900' => 'ath', 'AT3G52920' => 'ath', 'AT5G03660' => 'ath', 'ATR0820G174' => 'atr', 'Atru.chr3.3357' => 'acertr', 'Atru.chr8.1614' => 'acertr', 'AUR62009804' => 'cqu', 'AUR62033550' => 'cqu', 'AUR62038116' => 'cqu', 'AUR62043077' => 'cqu', 'AUR62043109' => 'cqu', 'BcaB01g00328' => 'bca', 'BcaB01g00329' => 'bca', 'BcaB01g00331' => 'bca', 'BcaB01g03839' => 'bca', 'BcaB01g03840' => 'bca', 'BcaB02g07804' => 'bca', 'BcaB02g10111' => 'bca', 'BcaB02g10112' => 'bca', 'BcaB03g11579' => 'bca', 'BcaB06g28937' => 'bca', 'BcaB06g28938' => 'bca', 'BcaC01g04255' => 'bca', 'BcaC01g05659' => 'bca', 'BcaC01g05660' => 'bca', 'BcaC02g07595' => 'bca', 'BcaC02g07596' => 'bca', 'BcaC02g07599' => 'bca', 'BcaC02g08233' => 'bca', 'BcaC02g10902' => 'bca', 'BcaC05g26952' => 'bca', 'BcaC05g29725' => 'bca', 'BcaC06g32075' => 'bca', 'BcaC06g34382' => 'bca', 'BcaC07g39653' => 'bca', 'BcaC07g39655' => 'bca', 'BcaC08g44604' => 'bca', 'BcaC08g44609' => 'bca', 'BcaNung04563' => 'bca', 'BolC3t14751H' => 'bol', 'BolC3t14752H' => 'bol', 'BolC3t16612H' => 'bol', 'BolC4t23885H' => 'bol', 'BolC4t28022H' => 'bol', 'BolC4t28023H' => 'bol', 'BolC5t31527H' => 'bol', 'BolC5t34463H' => 'bol', 'BolC6t37260H' => 'bol', 'BolC6t37265H' => 'bol', 'BolC8t50430H' => 'bol', 'BolC9t60061H' => 'bol', 'BraA03t11262Z' => 'bra', 'BraA03t11263Z' => 'bra', 'BraA03t12748Z' => 'bra', 'BraA04t17679Z' => 'bra', 'BraA04t18283Z' => 'bra', 'BraA05t22696Z' => 'bra', 'BraA07t29552Z' => 'bra', 'BraA07t29815Z' => 'bra', 'BraA07t29818Z' => 'bra', 'BraA09t37749Z' => 'bra', 'BraA09t40061Z' => 'bra', 'BraA10t45284Z' => 'bra', 'C02p63920' => 'bna', 'C03p23570' => 'bna', 'C03p23580' => 'bna', 'C03p43410' => 'bna', 'C03p83960' => 'bna', 'C04p04350' => 'bna', 'C04p23920' => 'bna', 'C05p28000' => 'bna', 'C05p58060' => 'bna', 'C06p20770' => 'bna', 'C06p20800' => 'bna', 'C08p28170' => 'bna', 'C09p73260' => 'bna', 'CAN.G1138.24' => 'can', 'CAN.G534.17' => 'can', 'CAN.G644.20' => 'can', 'CAN.G824.17' => 'can', 'CANSAT54G0979' => 'cansat', 'CANSAT56G2006' => 'cansat', 'CANSAT80G0207' => 'cansat', 'CARHR084490' => 'chi', 'CARHR120440' => 'chi', 'CARHR130650' => 'chi', 'CARHR130710' => 'chi', 'CARHR162780' => 'chi', 'CARHR162800' => 'chi', 'CARHR209640' => 'chi', 'Carub.0003s0908' => 'cru', 'Carub.0004s0849' => 'cru', 'Carub.0004s1814' => 'cru', 'Carub.0004s1821' => 'cru', 'Carub.0004s1822' => 'cru', 'Carub.0005s1937' => 'cru', 'Carub.0005s1940' => 'cru', 'Carub.0006s0257' => 'cru', 'Ca_01672_v3' => 'car', 'Ca_08972_v3' => 'car', 'Ca_10500_v3' => 'car', 'Cc01_g09640' => 'ccan', 'Cc02_g09990' => 'ccan', 'Cc06_g05380' => 'ccan', 'Cfa010072' => 'cfa', 'Cfa011239' => 'cfa', 'Cfa016558' => 'cfa', 'Ciclev10012928m.g' => 'ccl', 'Ciclev10029402m.g' => 'ccl', 'Ciclev10032972m.g' => 'ccl', 'CiPaw.09G009700' => 'cil', 'CiPaw.10G006400' => 'cil', 'CiPaw.13G037300' => 'cil', 'CiPaw.13G139900' => 'cil', 'CiPaw.14G029500' => 'cil', 'CiPaw.14G102900' => 'cil', 'ClCG01G012520' => 'cla', 'ClCG04G009830' => 'cla', 'ClCG05G021660' => 'cla', 'ClCG10G019230' => 'cla', 'COL.COLO4_19956' => 'col', 'COL.COLO4_20108' => 'col', 'COL.COLO4_29798' => 'col', 'Cpa.g.sc19.16' => 'cpa', 'Cpa.g.sc47.78' => 'cpa', 'Cpa.g.sc5.64' => 'cpa', 'CsaV3_1G014610' => 'csa', 'CsaV3_3G036960' => 'csa', 'CsaV3_5G035610' => 'csa', 'CsaV3_6G040460' => 'csa', 'CsaV3_7G016250' => 'csa', 'CSS0010573' => 'camsi', 'CSS0014590' => 'camsi', 'CSS0016769' => 'camsi', 'CSS0040261' => 'camsi', 'DCAR_003295' => 'dca', 'DCAR_007745' => 'dca', 'DCAR_009138' => 'dca', 'DCAR_010376' => 'dca', 'DCAR_013368' => 'dca', 'Dinv01490' => 'din', 'Dinv19840' => 'din', 'Dinv20807' => 'din', 'Dinv20808' => 'din', 'Dinv21243' => 'din', 'Dinv29437' => 'din', 'Dinv42584' => 'din', 'Duzib093G0422' => 'dzi', 'Duzib106G1466' => 'dzi', 'Duzib114G0983' => 'dzi', 'Duzib128G1404' => 'dzi', 'Duzib150G1320' => 'dzi', 'Duzib168G1030' => 'dzi', 'Duzib170G1003' => 'dzi', 'ECA232G3340' => 'eca', 'ECA233G0175' => 'eca', 'ECA233G0586' => 'eca', 'ECA238G4172' => 'eca', 'ECA248G0645' => 'eca', 'EL10Ac7g15782' => 'bvu', 'EL10Ac7g16971' => 'bvu', 'Eucgr.A01535' => 'egr', 'Eucgr.B03885' => 'egr', 'Eucgr.I00610' => 'egr', 'Eucgr.I00611' => 'egr', 'Eucgr.I00613' => 'egr', 'Eucgr.I00618' => 'egr', 'Eucgr.I01679' => 'egr', 'Eucgr.J01003' => 'egr', 'Eucgr.K02066' => 'egr', 'FAN05G0604' => 'fan', 'FAN05G3700' => 'fan', 'FAN09G2556' => 'fan', 'FAN11G2257' => 'fan', 'FAN19G1423' => 'fan', 'FAN21G3263' => 'fan', 'FAN23G1439' => 'fan', 'FAN23G2475' => 'fan', 'FAN25G2980' => 'fan', 'FAN26G3147' => 'fan', 'FAN28G0119' => 'fan', 'FvH4_1g24952' => 'fve', 'FvH4_1g27500' => 'fve', 'FvH4_3g09321' => 'fve', 'FvH4_3g29660' => 'fve', 'FvH4_6g18110' => 'fve', 'Glyma.03G192100' => 'gma', 'Glyma.10G202700' => 'gma', 'Glyma.11G188000' => 'gma', 'Glyma.12G086500' => 'gma', 'Glyma.19G192600' => 'gma', 'Glyma.20G187600' => 'gma', 'Gohir.A01G208000' => 'ghi', 'Gohir.A04G026850' => 'ghi', 'Gohir.A07G108100' => 'ghi', 'Gohir.A09G094100' => 'ghi', 'Gohir.A09G137500' => 'ghi', 'Gohir.D01G197400' => 'ghi', 'Gohir.D07G111900' => 'ghi', 'Gohir.D09G093700' => 'ghi', 'Gohir.D09G137100' => 'ghi', 'Gorai.001G120300' => 'gra', 'Gorai.002G241500' => 'gra', 'Gorai.006G110300' => 'gra', 'Gorai.006G157400' => 'gra', 'GSVIVG01031383001' => 'vvi', 'GSVIVG01033798001' => 'vvi', 'GSVIVG01034739001' => 'vvi', 'HanXRQChr04g0094641' => 'han', 'HanXRQChr05g0146841' => 'han', 'HanXRQChr07g0197791' => 'han', 'HanXRQChr08g0217871' => 'han', 'HanXRQChr11g0351201' => 'han', 'HanXRQChr12g0380951' => 'han', 'HanXRQChr15g0491581' => 'han', 'HanXRQChr15g0491981' => 'han', 'Haze_02591' => 'cav', 'Haze_19559' => 'cav', 'Haze_23438' => 'cav', 'Hma1.2p1_0084F.1_g043370' => 'hma', 'Hma1.2p1_0246F.1_g101750' => 'hma', 'Hma1.2p1_0352F.1_g132990' => 'hma', 'Hma1.2p1_0646F.1_g194990' => 'hma', 'HPP92_005461' => 'vpl', 'Hund04040' => 'sun', 'Hund18733' => 'sun', 'Hund19283' => 'sun', 'Lalb_Chr02g0151421' => 'lal', 'Lalb_Chr19g0136711' => 'lal', 'Lalb_Chr20g0112121' => 'lal', 'Lalb_Chr25g0288601' => 'lal', 'Lj1g0019636' => 'lja', 'Lj2A991T87' => 'lonja', 'Lj2C131G2' => 'lonja', 'Lj2C29T21' => 'lonja', 'Lj3A1002G51' => 'lonja', 'Lj3g0001526' => 'lja', 'Lj5g0018470' => 'lja', 'Lsat_1_v5_gn_0_7361' => 'lsa', 'Lsat_1_v5_gn_1_48540' => 'lsa', 'Lsat_1_v5_gn_2_95641' => 'lsa', 'Lsat_1_v5_gn_6_41721' => 'lsa', 'Lsat_1_v5_gn_6_70780' => 'lsa', 'Manes.04G007200' => 'mes', 'Manes.07G089500' => 'mes', 'Manes.08G022200' => 'mes', 'Manes.10G057100' => 'mes', 'Manes.11G158800' => 'mes', 'Mapoly0038s0078' => 'mpo', 'MBI01_g05551_MAGBIO' => 'mbi', 'MD02G1248700' => 'mdo', 'MD02G1248800' => 'mdo', 'MD03G1136300' => 'mdo', 'MD07G1067500' => 'mdo', 'MD11G1158600' => 'mdo', 'MD12G1019800' => 'mdo', 'MD12G1020200' => 'mdo', 'MD14G1017400' => 'mdo', 'Medtr1g492930' => 'mtr', 'Medtr2g085025' => 'mtr', 'Medtr7g104020' => 'mtr', 'MELO3C004756.2' => 'cme', 'MELO3C009443.2' => 'cme', 'MELO3C012362.2' => 'cme', 'MELO3C024522.2' => 'cme', 'Migut.F00895' => 'egut', 'Migut.F01642' => 'egut', 'Migut.J00976' => 'egut', 'Migut.N02509' => 'egut', 'MSTRG.17720' => 'ama', 'MSTRG.18737' => 'ama', 'MSTRG.19237' => 'ama', 'MSTRG.27523' => 'ama', 'MSTRG.5815' => 'ama', 'MSTRG.9108' => 'ama', 'Nitab4.5_0000132g0090' => 'nta', 'Nitab4.5_0000962g0030' => 'nta', 'Nitab4.5_0000963g0040' => 'nta', 'Nitab4.5_0003454g0030' => 'nta', 'Nitab4.5_0003541g0050' => 'nta', 'Nitab4.5_0005390g0050' => 'nta', 'Nitab4.5_0006089g0030' => 'nta', 'Nitab4.5_0022552g0010' => 'nta', 'Nn2g14049' => 'nnu', 'Nn6g35015' => 'nnu', 'Oeu018723.1' => 'oeu', 'Oeu030499.1' => 'oeu', 'Oeu032418.1' => 'oeu', 'Oeu039816.1' => 'oeu', 'Oeu040529.1' => 'oeu', 'Oeu042278.1' => 'oeu', 'Oeu050192.1' => 'oeu', 'Oeu050193.1' => 'oeu', 'Oeu052893.1' => 'oeu', 'Oeu058279.1' => 'oeu', 'Os02g0528100' => 'osa', 'Os04g0408600' => 'osa', 'Peaxi162Scf00002g05425' => 'pax', 'Peaxi162Scf00068g00034' => 'pax', 'Peaxi162Scf00163g00217' => 'pax', 'Peaxi162Scf00244g01120' => 'pax', 'PGR004G1543' => 'pgr', 'PGR044G2729' => 'pgr', 'PGR102G0613' => 'pgr', 'PGR142G1757' => 'pgr', 'PGSC0003DMG400002711' => 'stu', 'PGSC0003DMG400019496' => 'stu', 'PGSC0003DMG400026542' => 'stu', 'PGSC0003DMG400028170' => 'stu', 'Phvul.001G187400' => 'pvu', 'Phvul.007G104200' => 'pvu', 'Phvul.011G091600' => 'pvu', 'Potri.004G186900' => 'ptr', 'Potri.006G115400' => 'ptr', 'Potri.009G147500' => 'ptr', 'Potri.010G235600' => 'ptr', 'Pp3c4_24280' => 'ppa', 'Prupe.2G084700' => 'ppe', 'Prupe.6G121000' => 'ppe', 'Prupe.7G115700' => 'ppe', 'Psat3g035200' => 'psa', 'Psat5g255800' => 'psa', 'Psat6g176880' => 'psa', 'PSO339G3783' => 'pso', 'PSO384G1686' => 'pso', 'PSO443G0050' => 'pso', 'QL01p013415' => 'qlo', 'QL04p042565' => 'qlo', 'QL04p042580' => 'qlo', 'QL07p040067' => 'qlo', 'RcHm_v2.0_Chr3g0472381' => 'rch', 'RcHm_v2.0_Chr3g0489011' => 'rch', 'RcHm_v2.0_Chr5g0055021' => 'rch', 'Rhsim03G0079200' => 'rsi', 'Rhsim03G0079800' => 'rsi', 'Rhsim04G0134900' => 'rsi', 'Rhsim13G0106700' => 'rsi', 'RhsimUnG0042300' => 'rsi', 'Sabra04G0125900' => 'sbr', 'Sabra06G0090300' => 'sbr', 'Sabra09G0113700' => 'sbr', 'Sabra09G0116200' => 'sbr', 'Sabra10G0182700' => 'sbr', 'SalBow3G0840' => 'sbo', 'SalBow3G4143' => 'sbo', 'SalBow3G4507' => 'sbo', 'SalBow6G2283' => 'sbo', 'SalBow6G4984' => 'sbo', 'Sc02g0001090' => 'sci', 'Sc05g0003410' => 'sci', 'Sc07g0005400' => 'sci', 'Sc12g0004260' => 'sci', 'Sed0001596' => 'sed', 'Sed0004160' => 'sed', 'Sed0008393' => 'sed', 'Sed0016219' => 'sed', 'Sed0025714' => 'sed', 'SGA_v2.0_scaffold15G07423' => 'sas', 'SGA_v2.0_scaffold27G11625' => 'sas', 'SGA_v2.0_scaffold4G02307' => 'sas', 'SGA_v2.0_scaffold62G21350' => 'sas', 'SGA_v2.0_scaffold710G53496' => 'sas', 'SGA_v2.0_scaffold71G23897' => 'sas', 'SGA_v2.0_scaffold75G24791' => 'sas', 'SGA_v2.0_scaffold83G26421' => 'sas', 'Solyc10g083520.2' => 'sly', 'Solyc11g007330.2' => 'sly', 'Solyc11g066970.3' => 'sly', 'Sopen09g003940' => 'spe', 'Sopen10g032990' => 'spe', 'Sopen11g003220' => 'spe', 'Sopen11g026690' => 'spe', 'Sp3g08320' => 'spa', 'Sp4g10570' => 'spa', 'Sp4g18700' => 'spa', 'Sp4g18710' => 'spa', 'Sp5g09410' => 'spa', 'Sp5g09440' => 'spa', 'Sp6g39070' => 'spa', 'TAR369G0967' => 'tar', 'TAR623G0765' => 'tar', 'TAR633G0289' => 'tar', 'TAR636G3651' => 'tar', 'THA.LOC104800548' => 'tha', 'THA.LOC104823107' => 'tha', 'THA.LOC104823227' => 'tha', 'THA.LOC104823463' => 'tha', 'THA.LOC104826930' => 'tha', 'THA.LOC104827507' => 'tha', 'Thecc.05G083200' => 'tca', 'Thecc.09G289800' => 'tca', 'Thecc.10G104800' => 'tca', 'Thhalv10010763m.g' => 'esa', 'Thhalv10010775m.g' => 'esa', 'Thhalv10014828m.g' => 'esa', 'Thhalv10017290m.g' => 'esa', 'Thhalv10017323m.g' => 'esa', 'Thhalv10021627m.g' => 'esa', 'TPR.G23399' => 'tpr', 'TPR.G2502' => 'tpr', 'TPR.G25372' => 'tpr', 'TPR.G8933' => 'tpr', 'TWI38G2326' => 'twi', 'TWI53G1386' => 'twi', 'TWI75G0553' => 'twi', 'TWI77G0148' => 'twi', 'TWI79G1399' => 'twi', 'unitig_26.g9246' => 'ugi', 'unitig_578.g15764' => 'ugi', 'unitig_736.g22529' => 'ugi', 'unitig_744.g24692' => 'ugi', 'unitig_749.g14290' => 'ugi', 'vmacro03287' => 'vma', 'vmacro07381' => 'vma', 'vmacro08823' => 'vma', 'vmacro10291' => 'vma', 'VMungo0720G2072' => 'vmu', 'VMungo1383G3133' => 'vmu', 'Zm00001eb242600' => 'zma', 'Zm00001eb421850' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001317', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001317' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001317', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '476', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001317' ) ), 'genes' => array( 'A03p20120' => 'bna', 'A03p20130' => 'bna', 'A03p35740' => 'bna', 'A04p21100' => 'bna', 'A04p27920' => 'bna', 'A04p27930' => 'bna', 'A05p18350' => 'bna', 'A05p39040' => 'bna', 'A07p18360' => 'bna', 'A07p21270' => 'bna', 'A07p21310' => 'bna', 'A08p15900' => 'bna', 'A09p21500' => 'bna', 'A09p43440' => 'bna', 'A09p45980' => 'bna', 'A09p68960' => 'bna', 'A10p32440' => 'bna', 'Aa31LG10G7830' => 'aar', 'Aa31LG10G8120' => 'aar', 'Aa31LG1G21570' => 'aar', 'Aa31LG3G2480' => 'aar', 'Aa31LG4G12450' => 'aar', 'Aa31LG5G21590' => 'aar', 'Aa31LG5G21600' => 'aar', 'Aa31LG5G8250' => 'aar', 'Aa31sc27G60' => 'aar', 'Aa31sc95G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3606' => 'aag', 'Actinidia05450' => 'ach', 'Actinidia10396' => 'ach', 'Actinidia24185' => 'ach', 'Actinidia31284' => 'ach', 'Actinidia34710' => 'ach', 'Ah.08g210840' => 'amhyb', 'Ah.08g216040' => 'amhyb', 'AL3G21270' => 'aly', 'AL4G22560' => 'aly', 'AL4G32510' => 'aly', 'AL4G32590' => 'aly', 'AL5G33680' => 'aly', 'AL5G33710' => 'aly', 'AL6G13170' => 'aly', 'Aqoxy1G00824' => 'aox', 'Aqoxy2G01358' => 'aox', 'Aqoxy4G02859' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3U3PFL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.95H5CE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4KAB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC2QWC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFPL44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6BTHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR4K5D' => 'arhy', 'AT2G27740' => 'ath', 'AT2G36355' => 'ath', 'AT2G36410' => 'ath', 'AT3G09980' => 'ath', 'AT3G52900' => 'ath', 'AT3G52920' => 'ath', 'AT5G03660' => 'ath', 'ATR0820G174' => 'atr', 'Atru.chr3.3357' => 'acertr', 'Atru.chr8.1614' => 'acertr', 'AUR62009804' => 'cqu', 'AUR62033550' => 'cqu', 'AUR62038116' => 'cqu', 'AUR62043077' => 'cqu', 'AUR62043109' => 'cqu', 'BcaB01g00328' => 'bca', 'BcaB01g00329' => 'bca', 'BcaB01g00331' => 'bca', 'BcaB01g03839' => 'bca', 'BcaB01g03840' => 'bca', 'BcaB02g07804' => 'bca', 'BcaB02g10111' => 'bca', 'BcaB02g10112' => 'bca', 'BcaB03g11579' => 'bca', 'BcaB06g28937' => 'bca', 'BcaB06g28938' => 'bca', 'BcaC01g04255' => 'bca', 'BcaC01g05659' => 'bca', 'BcaC01g05660' => 'bca', 'BcaC02g07595' => 'bca', 'BcaC02g07596' => 'bca', 'BcaC02g07599' => 'bca', 'BcaC02g08233' => 'bca', 'BcaC02g10902' => 'bca', 'BcaC05g26952' => 'bca', 'BcaC05g29725' => 'bca', 'BcaC06g32075' => 'bca', 'BcaC06g34382' => 'bca', 'BcaC07g39653' => 'bca', 'BcaC07g39655' => 'bca', 'BcaC08g44604' => 'bca', 'BcaC08g44609' => 'bca', 'BcaNung04563' => 'bca', 'BolC3t14751H' => 'bol', 'BolC3t14752H' => 'bol', 'BolC3t16612H' => 'bol', 'BolC4t23885H' => 'bol', 'BolC4t28022H' => 'bol', 'BolC4t28023H' => 'bol', 'BolC5t31527H' => 'bol', 'BolC5t34463H' => 'bol', 'BolC6t37260H' => 'bol', 'BolC6t37265H' => 'bol', 'BolC8t50430H' => 'bol', 'BolC9t60061H' => 'bol', 'BraA03t11262Z' => 'bra', 'BraA03t11263Z' => 'bra', 'BraA03t12748Z' => 'bra', 'BraA04t17679Z' => 'bra', 'BraA04t18283Z' => 'bra', 'BraA05t22696Z' => 'bra', 'BraA07t29552Z' => 'bra', 'BraA07t29815Z' => 'bra', 'BraA07t29818Z' => 'bra', 'BraA09t37749Z' => 'bra', 'BraA09t40061Z' => 'bra', 'BraA10t45284Z' => 'bra', 'C02p63920' => 'bna', 'C03p23570' => 'bna', 'C03p23580' => 'bna', 'C03p43410' => 'bna', 'C03p83960' => 'bna', 'C04p04350' => 'bna', 'C04p23920' => 'bna', 'C05p28000' => 'bna', 'C05p58060' => 'bna', 'C06p20770' => 'bna', 'C06p20800' => 'bna', 'C08p28170' => 'bna', 'C09p73260' => 'bna', 'CAN.G1138.24' => 'can', 'CAN.G534.17' => 'can', 'CAN.G644.20' => 'can', 'CAN.G824.17' => 'can', 'CANSAT54G0979' => 'cansat', 'CANSAT56G2006' => 'cansat', 'CANSAT80G0207' => 'cansat', 'CARHR084490' => 'chi', 'CARHR120440' => 'chi', 'CARHR130650' => 'chi', 'CARHR130710' => 'chi', 'CARHR162780' => 'chi', 'CARHR162800' => 'chi', 'CARHR209640' => 'chi', 'Carub.0003s0908' => 'cru', 'Carub.0004s0849' => 'cru', 'Carub.0004s1814' => 'cru', 'Carub.0004s1821' => 'cru', 'Carub.0004s1822' => 'cru', 'Carub.0005s1937' => 'cru', 'Carub.0005s1940' => 'cru', 'Carub.0006s0257' => 'cru', 'Ca_01672_v3' => 'car', 'Ca_08972_v3' => 'car', 'Ca_10500_v3' => 'car', 'Cc01_g09640' => 'ccan', 'Cc02_g09990' => 'ccan', 'Cc06_g05380' => 'ccan', 'Cfa010072' => 'cfa', 'Cfa011239' => 'cfa', 'Cfa016558' => 'cfa', 'Ciclev10012928m.g' => 'ccl', 'Ciclev10029402m.g' => 'ccl', 'Ciclev10032972m.g' => 'ccl', 'CiPaw.09G009700' => 'cil', 'CiPaw.10G006400' => 'cil', 'CiPaw.13G037300' => 'cil', 'CiPaw.13G139900' => 'cil', 'CiPaw.14G029500' => 'cil', 'CiPaw.14G102900' => 'cil', 'ClCG01G012520' => 'cla', 'ClCG04G009830' => 'cla', 'ClCG05G021660' => 'cla', 'ClCG10G019230' => 'cla', 'COL.COLO4_19956' => 'col', 'COL.COLO4_20108' => 'col', 'COL.COLO4_29798' => 'col', 'Cpa.g.sc19.16' => 'cpa', 'Cpa.g.sc47.78' => 'cpa', 'Cpa.g.sc5.64' => 'cpa', 'CsaV3_1G014610' => 'csa', 'CsaV3_3G036960' => 'csa', 'CsaV3_5G035610' => 'csa', 'CsaV3_6G040460' => 'csa', 'CsaV3_7G016250' => 'csa', 'CSS0010573' => 'camsi', 'CSS0014590' => 'camsi', 'CSS0016769' => 'camsi', 'CSS0040261' => 'camsi', 'DCAR_003295' => 'dca', 'DCAR_007745' => 'dca', 'DCAR_009138' => 'dca', 'DCAR_010376' => 'dca', 'DCAR_013368' => 'dca', 'Dinv01490' => 'din', 'Dinv19840' => 'din', 'Dinv20807' => 'din', 'Dinv20808' => 'din', 'Dinv21243' => 'din', 'Dinv29437' => 'din', 'Dinv42584' => 'din', 'Duzib093G0422' => 'dzi', 'Duzib106G1466' => 'dzi', 'Duzib114G0983' => 'dzi', 'Duzib128G1404' => 'dzi', 'Duzib150G1320' => 'dzi', 'Duzib168G1030' => 'dzi', 'Duzib170G1003' => 'dzi', 'ECA232G3340' => 'eca', 'ECA233G0175' => 'eca', 'ECA233G0586' => 'eca', 'ECA238G4172' => 'eca', 'ECA248G0645' => 'eca', 'EL10Ac7g15782' => 'bvu', 'EL10Ac7g16971' => 'bvu', 'Eucgr.A01535' => 'egr', 'Eucgr.B03885' => 'egr', 'Eucgr.I00610' => 'egr', 'Eucgr.I00611' => 'egr', 'Eucgr.I00613' => 'egr', 'Eucgr.I00618' => 'egr', 'Eucgr.I01679' => 'egr', 'Eucgr.J01003' => 'egr', 'Eucgr.K02066' => 'egr', 'FAN05G0604' => 'fan', 'FAN05G3700' => 'fan', 'FAN09G2556' => 'fan', 'FAN11G2257' => 'fan', 'FAN19G1423' => 'fan', 'FAN21G3263' => 'fan', 'FAN23G1439' => 'fan', 'FAN23G2475' => 'fan', 'FAN25G2980' => 'fan', 'FAN26G3147' => 'fan', 'FAN28G0119' => 'fan', 'FvH4_1g24952' => 'fve', 'FvH4_1g27500' => 'fve', 'FvH4_3g09321' => 'fve', 'FvH4_3g29660' => 'fve', 'FvH4_6g18110' => 'fve', 'Glyma.03G192100' => 'gma', 'Glyma.10G202700' => 'gma', 'Glyma.11G188000' => 'gma', 'Glyma.12G086500' => 'gma', 'Glyma.19G192600' => 'gma', 'Glyma.20G187600' => 'gma', 'Gohir.A01G208000' => 'ghi', 'Gohir.A04G026850' => 'ghi', 'Gohir.A07G108100' => 'ghi', 'Gohir.A09G094100' => 'ghi', 'Gohir.A09G137500' => 'ghi', 'Gohir.D01G197400' => 'ghi', 'Gohir.D07G111900' => 'ghi', 'Gohir.D09G093700' => 'ghi', 'Gohir.D09G137100' => 'ghi', 'Gorai.001G120300' => 'gra', 'Gorai.002G241500' => 'gra', 'Gorai.006G110300' => 'gra', 'Gorai.006G157400' => 'gra', 'GSVIVG01031383001' => 'vvi', 'GSVIVG01033798001' => 'vvi', 'GSVIVG01034739001' => 'vvi', 'HanXRQChr04g0094641' => 'han', 'HanXRQChr05g0146841' => 'han', 'HanXRQChr07g0197791' => 'han', 'HanXRQChr08g0217871' => 'han', 'HanXRQChr11g0351201' => 'han', 'HanXRQChr12g0380951' => 'han', 'HanXRQChr15g0491581' => 'han', 'HanXRQChr15g0491981' => 'han', 'Haze_02591' => 'cav', 'Haze_19559' => 'cav', 'Haze_23438' => 'cav', 'Hma1.2p1_0084F.1_g043370' => 'hma', 'Hma1.2p1_0246F.1_g101750' => 'hma', 'Hma1.2p1_0352F.1_g132990' => 'hma', 'Hma1.2p1_0646F.1_g194990' => 'hma', 'HPP92_005461' => 'vpl', 'Hund04040' => 'sun', 'Hund18733' => 'sun', 'Hund19283' => 'sun', 'Lalb_Chr02g0151421' => 'lal', 'Lalb_Chr19g0136711' => 'lal', 'Lalb_Chr20g0112121' => 'lal', 'Lalb_Chr25g0288601' => 'lal', 'Lj1g0019636' => 'lja', 'Lj2A991T87' => 'lonja', 'Lj2C131G2' => 'lonja', 'Lj2C29T21' => 'lonja', 'Lj3A1002G51' => 'lonja', 'Lj3g0001526' => 'lja', 'Lj5g0018470' => 'lja', 'Lsat_1_v5_gn_0_7361' => 'lsa', 'Lsat_1_v5_gn_1_48540' => 'lsa', 'Lsat_1_v5_gn_2_95641' => 'lsa', 'Lsat_1_v5_gn_6_41721' => 'lsa', 'Lsat_1_v5_gn_6_70780' => 'lsa', 'Manes.04G007200' => 'mes', 'Manes.07G089500' => 'mes', 'Manes.08G022200' => 'mes', 'Manes.10G057100' => 'mes', 'Manes.11G158800' => 'mes', 'Mapoly0038s0078' => 'mpo', 'MBI01_g05551_MAGBIO' => 'mbi', 'MD02G1248700' => 'mdo', 'MD02G1248800' => 'mdo', 'MD03G1136300' => 'mdo', 'MD07G1067500' => 'mdo', 'MD11G1158600' => 'mdo', 'MD12G1019800' => 'mdo', 'MD12G1020200' => 'mdo', 'MD14G1017400' => 'mdo', 'Medtr1g492930' => 'mtr', 'Medtr2g085025' => 'mtr', 'Medtr7g104020' => 'mtr', 'MELO3C004756.2' => 'cme', 'MELO3C009443.2' => 'cme', 'MELO3C012362.2' => 'cme', 'MELO3C024522.2' => 'cme', 'Migut.F00895' => 'egut', 'Migut.F01642' => 'egut', 'Migut.J00976' => 'egut', 'Migut.N02509' => 'egut', 'MSTRG.17720' => 'ama', 'MSTRG.18737' => 'ama', 'MSTRG.19237' => 'ama', 'MSTRG.27523' => 'ama', 'MSTRG.5815' => 'ama', 'MSTRG.9108' => 'ama', 'Nitab4.5_0000132g0090' => 'nta', 'Nitab4.5_0000962g0030' => 'nta', 'Nitab4.5_0000963g0040' => 'nta', 'Nitab4.5_0003454g0030' => 'nta', 'Nitab4.5_0003541g0050' => 'nta', 'Nitab4.5_0005390g0050' => 'nta', 'Nitab4.5_0006089g0030' => 'nta', 'Nitab4.5_0022552g0010' => 'nta', 'Nn2g14049' => 'nnu', 'Nn6g35015' => 'nnu', 'Oeu018723.1' => 'oeu', 'Oeu030499.1' => 'oeu', 'Oeu032418.1' => 'oeu', 'Oeu039816.1' => 'oeu', 'Oeu040529.1' => 'oeu', 'Oeu042278.1' => 'oeu', 'Oeu050192.1' => 'oeu', 'Oeu050193.1' => 'oeu', 'Oeu052893.1' => 'oeu', 'Oeu058279.1' => 'oeu', 'Os02g0528100' => 'osa', 'Os04g0408600' => 'osa', 'Peaxi162Scf00002g05425' => 'pax', 'Peaxi162Scf00068g00034' => 'pax', 'Peaxi162Scf00163g00217' => 'pax', 'Peaxi162Scf00244g01120' => 'pax', 'PGR004G1543' => 'pgr', 'PGR044G2729' => 'pgr', 'PGR102G0613' => 'pgr', 'PGR142G1757' => 'pgr', 'PGSC0003DMG400002711' => 'stu', 'PGSC0003DMG400019496' => 'stu', 'PGSC0003DMG400026542' => 'stu', 'PGSC0003DMG400028170' => 'stu', 'Phvul.001G187400' => 'pvu', 'Phvul.007G104200' => 'pvu', 'Phvul.011G091600' => 'pvu', 'Potri.004G186900' => 'ptr', 'Potri.006G115400' => 'ptr', 'Potri.009G147500' => 'ptr', 'Potri.010G235600' => 'ptr', 'Pp3c4_24280' => 'ppa', 'Prupe.2G084700' => 'ppe', 'Prupe.6G121000' => 'ppe', 'Prupe.7G115700' => 'ppe', 'Psat3g035200' => 'psa', 'Psat5g255800' => 'psa', 'Psat6g176880' => 'psa', 'PSO339G3783' => 'pso', 'PSO384G1686' => 'pso', 'PSO443G0050' => 'pso', 'QL01p013415' => 'qlo', 'QL04p042565' => 'qlo', 'QL04p042580' => 'qlo', 'QL07p040067' => 'qlo', 'RcHm_v2.0_Chr3g0472381' => 'rch', 'RcHm_v2.0_Chr3g0489011' => 'rch', 'RcHm_v2.0_Chr5g0055021' => 'rch', 'Rhsim03G0079200' => 'rsi', 'Rhsim03G0079800' => 'rsi', 'Rhsim04G0134900' => 'rsi', 'Rhsim13G0106700' => 'rsi', 'RhsimUnG0042300' => 'rsi', 'Sabra04G0125900' => 'sbr', 'Sabra06G0090300' => 'sbr', 'Sabra09G0113700' => 'sbr', 'Sabra09G0116200' => 'sbr', 'Sabra10G0182700' => 'sbr', 'SalBow3G0840' => 'sbo', 'SalBow3G4143' => 'sbo', 'SalBow3G4507' => 'sbo', 'SalBow6G2283' => 'sbo', 'SalBow6G4984' => 'sbo', 'Sc02g0001090' => 'sci', 'Sc05g0003410' => 'sci', 'Sc07g0005400' => 'sci', 'Sc12g0004260' => 'sci', 'Sed0001596' => 'sed', 'Sed0004160' => 'sed', 'Sed0008393' => 'sed', 'Sed0016219' => 'sed', 'Sed0025714' => 'sed', 'SGA_v2.0_scaffold15G07423' => 'sas', 'SGA_v2.0_scaffold27G11625' => 'sas', 'SGA_v2.0_scaffold4G02307' => 'sas', 'SGA_v2.0_scaffold62G21350' => 'sas', 'SGA_v2.0_scaffold710G53496' => 'sas', 'SGA_v2.0_scaffold71G23897' => 'sas', 'SGA_v2.0_scaffold75G24791' => 'sas', 'SGA_v2.0_scaffold83G26421' => 'sas', 'Solyc10g083520.2' => 'sly', 'Solyc11g007330.2' => 'sly', 'Solyc11g066970.3' => 'sly', 'Sopen09g003940' => 'spe', 'Sopen10g032990' => 'spe', 'Sopen11g003220' => 'spe', 'Sopen11g026690' => 'spe', 'Sp3g08320' => 'spa', 'Sp4g10570' => 'spa', 'Sp4g18700' => 'spa', 'Sp4g18710' => 'spa', 'Sp5g09410' => 'spa', 'Sp5g09440' => 'spa', 'Sp6g39070' => 'spa', 'TAR369G0967' => 'tar', 'TAR623G0765' => 'tar', 'TAR633G0289' => 'tar', 'TAR636G3651' => 'tar', 'THA.LOC104800548' => 'tha', 'THA.LOC104823107' => 'tha', 'THA.LOC104823227' => 'tha', 'THA.LOC104823463' => 'tha', 'THA.LOC104826930' => 'tha', 'THA.LOC104827507' => 'tha', 'Thecc.05G083200' => 'tca', 'Thecc.09G289800' => 'tca', 'Thecc.10G104800' => 'tca', 'Thhalv10010763m.g' => 'esa', 'Thhalv10010775m.g' => 'esa', 'Thhalv10014828m.g' => 'esa', 'Thhalv10017290m.g' => 'esa', 'Thhalv10017323m.g' => 'esa', 'Thhalv10021627m.g' => 'esa', 'TPR.G23399' => 'tpr', 'TPR.G2502' => 'tpr', 'TPR.G25372' => 'tpr', 'TPR.G8933' => 'tpr', 'TWI38G2326' => 'twi', 'TWI53G1386' => 'twi', 'TWI75G0553' => 'twi', 'TWI77G0148' => 'twi', 'TWI79G1399' => 'twi', 'unitig_26.g9246' => 'ugi', 'unitig_578.g15764' => 'ugi', 'unitig_736.g22529' => 'ugi', 'unitig_744.g24692' => 'ugi', 'unitig_749.g14290' => 'ugi', 'vmacro03287' => 'vma', 'vmacro07381' => 'vma', 'vmacro08823' => 'vma', 'vmacro10291' => 'vma', 'VMungo0720G2072' => 'vmu', 'VMungo1383G3133' => 'vmu', 'Zm00001eb242600' => 'zma', 'Zm00001eb421850' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001317' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001317' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001317' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001317' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001317', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '476', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p20120' => 'bna', 'A03p20130' => 'bna', 'A03p35740' => 'bna', 'A04p21100' => 'bna', 'A04p27920' => 'bna', 'A04p27930' => 'bna', 'A05p18350' => 'bna', 'A05p39040' => 'bna', 'A07p18360' => 'bna', 'A07p21270' => 'bna', 'A07p21310' => 'bna', 'A08p15900' => 'bna', 'A09p21500' => 'bna', 'A09p43440' => 'bna', 'A09p45980' => 'bna', 'A09p68960' => 'bna', 'A10p32440' => 'bna', 'Aa31LG10G7830' => 'aar', 'Aa31LG10G8120' => 'aar', 'Aa31LG1G21570' => 'aar', 'Aa31LG3G2480' => 'aar', 'Aa31LG4G12450' => 'aar', 'Aa31LG5G21590' => 'aar', 'Aa31LG5G21600' => 'aar', 'Aa31LG5G8250' => 'aar', 'Aa31sc27G60' => 'aar', 'Aa31sc95G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3606' => 'aag', 'Actinidia05450' => 'ach', 'Actinidia10396' => 'ach', 'Actinidia24185' => 'ach', 'Actinidia31284' => 'ach', 'Actinidia34710' => 'ach', 'Ah.08g210840' => 'amhyb', 'Ah.08g216040' => 'amhyb', 'AL3G21270' => 'aly', 'AL4G22560' => 'aly', 'AL4G32510' => 'aly', 'AL4G32590' => 'aly', 'AL5G33680' => 'aly', 'AL5G33710' => 'aly', 'AL6G13170' => 'aly', 'Aqoxy1G00824' => 'aox', 'Aqoxy2G01358' => 'aox', 'Aqoxy4G02859' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3U3PFL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.95H5CE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4KAB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC2QWC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFPL44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6BTHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR4K5D' => 'arhy', 'AT2G27740' => 'ath', 'AT2G36355' => 'ath', 'AT2G36410' => 'ath', 'AT3G09980' => 'ath', 'AT3G52900' => 'ath', 'AT3G52920' => 'ath', 'AT5G03660' => 'ath', 'ATR0820G174' => 'atr', 'Atru.chr3.3357' => 'acertr', 'Atru.chr8.1614' => 'acertr', 'AUR62009804' => 'cqu', 'AUR62033550' => 'cqu', 'AUR62038116' => 'cqu', 'AUR62043077' => 'cqu', 'AUR62043109' => 'cqu', 'BcaB01g00328' => 'bca', 'BcaB01g00329' => 'bca', 'BcaB01g00331' => 'bca', 'BcaB01g03839' => 'bca', 'BcaB01g03840' => 'bca', 'BcaB02g07804' => 'bca', 'BcaB02g10111' => 'bca', 'BcaB02g10112' => 'bca', 'BcaB03g11579' => 'bca', 'BcaB06g28937' => 'bca', 'BcaB06g28938' => 'bca', 'BcaC01g04255' => 'bca', 'BcaC01g05659' => 'bca', 'BcaC01g05660' => 'bca', 'BcaC02g07595' => 'bca', 'BcaC02g07596' => 'bca', 'BcaC02g07599' => 'bca', 'BcaC02g08233' => 'bca', 'BcaC02g10902' => 'bca', 'BcaC05g26952' => 'bca', 'BcaC05g29725' => 'bca', 'BcaC06g32075' => 'bca', 'BcaC06g34382' => 'bca', 'BcaC07g39653' => 'bca', 'BcaC07g39655' => 'bca', 'BcaC08g44604' => 'bca', 'BcaC08g44609' => 'bca', 'BcaNung04563' => 'bca', 'BolC3t14751H' => 'bol', 'BolC3t14752H' => 'bol', 'BolC3t16612H' => 'bol', 'BolC4t23885H' => 'bol', 'BolC4t28022H' => 'bol', 'BolC4t28023H' => 'bol', 'BolC5t31527H' => 'bol', 'BolC5t34463H' => 'bol', 'BolC6t37260H' => 'bol', 'BolC6t37265H' => 'bol', 'BolC8t50430H' => 'bol', 'BolC9t60061H' => 'bol', 'BraA03t11262Z' => 'bra', 'BraA03t11263Z' => 'bra', 'BraA03t12748Z' => 'bra', 'BraA04t17679Z' => 'bra', 'BraA04t18283Z' => 'bra', 'BraA05t22696Z' => 'bra', 'BraA07t29552Z' => 'bra', 'BraA07t29815Z' => 'bra', 'BraA07t29818Z' => 'bra', 'BraA09t37749Z' => 'bra', 'BraA09t40061Z' => 'bra', 'BraA10t45284Z' => 'bra', 'C02p63920' => 'bna', 'C03p23570' => 'bna', 'C03p23580' => 'bna', 'C03p43410' => 'bna', 'C03p83960' => 'bna', 'C04p04350' => 'bna', 'C04p23920' => 'bna', 'C05p28000' => 'bna', 'C05p58060' => 'bna', 'C06p20770' => 'bna', 'C06p20800' => 'bna', 'C08p28170' => 'bna', 'C09p73260' => 'bna', 'CAN.G1138.24' => 'can', 'CAN.G534.17' => 'can', 'CAN.G644.20' => 'can', 'CAN.G824.17' => 'can', 'CANSAT54G0979' => 'cansat', 'CANSAT56G2006' => 'cansat', 'CANSAT80G0207' => 'cansat', 'CARHR084490' => 'chi', 'CARHR120440' => 'chi', 'CARHR130650' => 'chi', 'CARHR130710' => 'chi', 'CARHR162780' => 'chi', 'CARHR162800' => 'chi', 'CARHR209640' => 'chi', 'Carub.0003s0908' => 'cru', 'Carub.0004s0849' => 'cru', 'Carub.0004s1814' => 'cru', 'Carub.0004s1821' => 'cru', 'Carub.0004s1822' => 'cru', 'Carub.0005s1937' => 'cru', 'Carub.0005s1940' => 'cru', 'Carub.0006s0257' => 'cru', 'Ca_01672_v3' => 'car', 'Ca_08972_v3' => 'car', 'Ca_10500_v3' => 'car', 'Cc01_g09640' => 'ccan', 'Cc02_g09990' => 'ccan', 'Cc06_g05380' => 'ccan', 'Cfa010072' => 'cfa', 'Cfa011239' => 'cfa', 'Cfa016558' => 'cfa', 'Ciclev10012928m.g' => 'ccl', 'Ciclev10029402m.g' => 'ccl', 'Ciclev10032972m.g' => 'ccl', 'CiPaw.09G009700' => 'cil', 'CiPaw.10G006400' => 'cil', 'CiPaw.13G037300' => 'cil', 'CiPaw.13G139900' => 'cil', 'CiPaw.14G029500' => 'cil', 'CiPaw.14G102900' => 'cil', 'ClCG01G012520' => 'cla', 'ClCG04G009830' => 'cla', 'ClCG05G021660' => 'cla', 'ClCG10G019230' => 'cla', 'COL.COLO4_19956' => 'col', 'COL.COLO4_20108' => 'col', 'COL.COLO4_29798' => 'col', 'Cpa.g.sc19.16' => 'cpa', 'Cpa.g.sc47.78' => 'cpa', 'Cpa.g.sc5.64' => 'cpa', 'CsaV3_1G014610' => 'csa', 'CsaV3_3G036960' => 'csa', 'CsaV3_5G035610' => 'csa', 'CsaV3_6G040460' => 'csa', 'CsaV3_7G016250' => 'csa', 'CSS0010573' => 'camsi', 'CSS0014590' => 'camsi', 'CSS0016769' => 'camsi', 'CSS0040261' => 'camsi', 'DCAR_003295' => 'dca', 'DCAR_007745' => 'dca', 'DCAR_009138' => 'dca', 'DCAR_010376' => 'dca', 'DCAR_013368' => 'dca', 'Dinv01490' => 'din', 'Dinv19840' => 'din', 'Dinv20807' => 'din', 'Dinv20808' => 'din', 'Dinv21243' => 'din', 'Dinv29437' => 'din', 'Dinv42584' => 'din', 'Duzib093G0422' => 'dzi', 'Duzib106G1466' => 'dzi', 'Duzib114G0983' => 'dzi', 'Duzib128G1404' => 'dzi', 'Duzib150G1320' => 'dzi', 'Duzib168G1030' => 'dzi', 'Duzib170G1003' => 'dzi', 'ECA232G3340' => 'eca', 'ECA233G0175' => 'eca', 'ECA233G0586' => 'eca', 'ECA238G4172' => 'eca', 'ECA248G0645' => 'eca', 'EL10Ac7g15782' => 'bvu', 'EL10Ac7g16971' => 'bvu', 'Eucgr.A01535' => 'egr', 'Eucgr.B03885' => 'egr', 'Eucgr.I00610' => 'egr', 'Eucgr.I00611' => 'egr', 'Eucgr.I00613' => 'egr', 'Eucgr.I00618' => 'egr', 'Eucgr.I01679' => 'egr', 'Eucgr.J01003' => 'egr', 'Eucgr.K02066' => 'egr', 'FAN05G0604' => 'fan', 'FAN05G3700' => 'fan', 'FAN09G2556' => 'fan', 'FAN11G2257' => 'fan', 'FAN19G1423' => 'fan', 'FAN21G3263' => 'fan', 'FAN23G1439' => 'fan', 'FAN23G2475' => 'fan', 'FAN25G2980' => 'fan', 'FAN26G3147' => 'fan', 'FAN28G0119' => 'fan', 'FvH4_1g24952' => 'fve', 'FvH4_1g27500' => 'fve', 'FvH4_3g09321' => 'fve', 'FvH4_3g29660' => 'fve', 'FvH4_6g18110' => 'fve', 'Glyma.03G192100' => 'gma', 'Glyma.10G202700' => 'gma', 'Glyma.11G188000' => 'gma', 'Glyma.12G086500' => 'gma', 'Glyma.19G192600' => 'gma', 'Glyma.20G187600' => 'gma', 'Gohir.A01G208000' => 'ghi', 'Gohir.A04G026850' => 'ghi', 'Gohir.A07G108100' => 'ghi', 'Gohir.A09G094100' => 'ghi', 'Gohir.A09G137500' => 'ghi', 'Gohir.D01G197400' => 'ghi', 'Gohir.D07G111900' => 'ghi', 'Gohir.D09G093700' => 'ghi', 'Gohir.D09G137100' => 'ghi', 'Gorai.001G120300' => 'gra', 'Gorai.002G241500' => 'gra', 'Gorai.006G110300' => 'gra', 'Gorai.006G157400' => 'gra', 'GSVIVG01031383001' => 'vvi', 'GSVIVG01033798001' => 'vvi', 'GSVIVG01034739001' => 'vvi', 'HanXRQChr04g0094641' => 'han', 'HanXRQChr05g0146841' => 'han', 'HanXRQChr07g0197791' => 'han', 'HanXRQChr08g0217871' => 'han', 'HanXRQChr11g0351201' => 'han', 'HanXRQChr12g0380951' => 'han', 'HanXRQChr15g0491581' => 'han', 'HanXRQChr15g0491981' => 'han', 'Haze_02591' => 'cav', 'Haze_19559' => 'cav', 'Haze_23438' => 'cav', 'Hma1.2p1_0084F.1_g043370' => 'hma', 'Hma1.2p1_0246F.1_g101750' => 'hma', 'Hma1.2p1_0352F.1_g132990' => 'hma', 'Hma1.2p1_0646F.1_g194990' => 'hma', 'HPP92_005461' => 'vpl', 'Hund04040' => 'sun', 'Hund18733' => 'sun', 'Hund19283' => 'sun', 'Lalb_Chr02g0151421' => 'lal', 'Lalb_Chr19g0136711' => 'lal', 'Lalb_Chr20g0112121' => 'lal', 'Lalb_Chr25g0288601' => 'lal', 'Lj1g0019636' => 'lja', 'Lj2A991T87' => 'lonja', 'Lj2C131G2' => 'lonja', 'Lj2C29T21' => 'lonja', 'Lj3A1002G51' => 'lonja', 'Lj3g0001526' => 'lja', 'Lj5g0018470' => 'lja', 'Lsat_1_v5_gn_0_7361' => 'lsa', 'Lsat_1_v5_gn_1_48540' => 'lsa', 'Lsat_1_v5_gn_2_95641' => 'lsa', 'Lsat_1_v5_gn_6_41721' => 'lsa', 'Lsat_1_v5_gn_6_70780' => 'lsa', 'Manes.04G007200' => 'mes', 'Manes.07G089500' => 'mes', 'Manes.08G022200' => 'mes', 'Manes.10G057100' => 'mes', 'Manes.11G158800' => 'mes', 'Mapoly0038s0078' => 'mpo', 'MBI01_g05551_MAGBIO' => 'mbi', 'MD02G1248700' => 'mdo', 'MD02G1248800' => 'mdo', 'MD03G1136300' => 'mdo', 'MD07G1067500' => 'mdo', 'MD11G1158600' => 'mdo', 'MD12G1019800' => 'mdo', 'MD12G1020200' => 'mdo', 'MD14G1017400' => 'mdo', 'Medtr1g492930' => 'mtr', 'Medtr2g085025' => 'mtr', 'Medtr7g104020' => 'mtr', 'MELO3C004756.2' => 'cme', 'MELO3C009443.2' => 'cme', 'MELO3C012362.2' => 'cme', 'MELO3C024522.2' => 'cme', 'Migut.F00895' => 'egut', 'Migut.F01642' => 'egut', 'Migut.J00976' => 'egut', 'Migut.N02509' => 'egut', 'MSTRG.17720' => 'ama', 'MSTRG.18737' => 'ama', 'MSTRG.19237' => 'ama', 'MSTRG.27523' => 'ama', 'MSTRG.5815' => 'ama', 'MSTRG.9108' => 'ama', 'Nitab4.5_0000132g0090' => 'nta', 'Nitab4.5_0000962g0030' => 'nta', 'Nitab4.5_0000963g0040' => 'nta', 'Nitab4.5_0003454g0030' => 'nta', 'Nitab4.5_0003541g0050' => 'nta', 'Nitab4.5_0005390g0050' => 'nta', 'Nitab4.5_0006089g0030' => 'nta', 'Nitab4.5_0022552g0010' => 'nta', 'Nn2g14049' => 'nnu', 'Nn6g35015' => 'nnu', 'Oeu018723.1' => 'oeu', 'Oeu030499.1' => 'oeu', 'Oeu032418.1' => 'oeu', 'Oeu039816.1' => 'oeu', 'Oeu040529.1' => 'oeu', 'Oeu042278.1' => 'oeu', 'Oeu050192.1' => 'oeu', 'Oeu050193.1' => 'oeu', 'Oeu052893.1' => 'oeu', 'Oeu058279.1' => 'oeu', 'Os02g0528100' => 'osa', 'Os04g0408600' => 'osa', 'Peaxi162Scf00002g05425' => 'pax', 'Peaxi162Scf00068g00034' => 'pax', 'Peaxi162Scf00163g00217' => 'pax', 'Peaxi162Scf00244g01120' => 'pax', 'PGR004G1543' => 'pgr', 'PGR044G2729' => 'pgr', 'PGR102G0613' => 'pgr', 'PGR142G1757' => 'pgr', 'PGSC0003DMG400002711' => 'stu', 'PGSC0003DMG400019496' => 'stu', 'PGSC0003DMG400026542' => 'stu', 'PGSC0003DMG400028170' => 'stu', 'Phvul.001G187400' => 'pvu', 'Phvul.007G104200' => 'pvu', 'Phvul.011G091600' => 'pvu', 'Potri.004G186900' => 'ptr', 'Potri.006G115400' => 'ptr', 'Potri.009G147500' => 'ptr', 'Potri.010G235600' => 'ptr', 'Pp3c4_24280' => 'ppa', 'Prupe.2G084700' => 'ppe', 'Prupe.6G121000' => 'ppe', 'Prupe.7G115700' => 'ppe', 'Psat3g035200' => 'psa', 'Psat5g255800' => 'psa', 'Psat6g176880' => 'psa', 'PSO339G3783' => 'pso', 'PSO384G1686' => 'pso', 'PSO443G0050' => 'pso', 'QL01p013415' => 'qlo', 'QL04p042565' => 'qlo', 'QL04p042580' => 'qlo', 'QL07p040067' => 'qlo', 'RcHm_v2.0_Chr3g0472381' => 'rch', 'RcHm_v2.0_Chr3g0489011' => 'rch', 'RcHm_v2.0_Chr5g0055021' => 'rch', 'Rhsim03G0079200' => 'rsi', 'Rhsim03G0079800' => 'rsi', 'Rhsim04G0134900' => 'rsi', 'Rhsim13G0106700' => 'rsi', 'RhsimUnG0042300' => 'rsi', 'Sabra04G0125900' => 'sbr', 'Sabra06G0090300' => 'sbr', 'Sabra09G0113700' => 'sbr', 'Sabra09G0116200' => 'sbr', 'Sabra10G0182700' => 'sbr', 'SalBow3G0840' => 'sbo', 'SalBow3G4143' => 'sbo', 'SalBow3G4507' => 'sbo', 'SalBow6G2283' => 'sbo', 'SalBow6G4984' => 'sbo', 'Sc02g0001090' => 'sci', 'Sc05g0003410' => 'sci', 'Sc07g0005400' => 'sci', 'Sc12g0004260' => 'sci', 'Sed0001596' => 'sed', 'Sed0004160' => 'sed', 'Sed0008393' => 'sed', 'Sed0016219' => 'sed', 'Sed0025714' => 'sed', 'SGA_v2.0_scaffold15G07423' => 'sas', 'SGA_v2.0_scaffold27G11625' => 'sas', 'SGA_v2.0_scaffold4G02307' => 'sas', 'SGA_v2.0_scaffold62G21350' => 'sas', 'SGA_v2.0_scaffold710G53496' => 'sas', 'SGA_v2.0_scaffold71G23897' => 'sas', 'SGA_v2.0_scaffold75G24791' => 'sas', 'SGA_v2.0_scaffold83G26421' => 'sas', 'Solyc10g083520.2' => 'sly', 'Solyc11g007330.2' => 'sly', 'Solyc11g066970.3' => 'sly', 'Sopen09g003940' => 'spe', 'Sopen10g032990' => 'spe', 'Sopen11g003220' => 'spe', 'Sopen11g026690' => 'spe', 'Sp3g08320' => 'spa', 'Sp4g10570' => 'spa', 'Sp4g18700' => 'spa', 'Sp4g18710' => 'spa', 'Sp5g09410' => 'spa', 'Sp5g09440' => 'spa', 'Sp6g39070' => 'spa', 'TAR369G0967' => 'tar', 'TAR623G0765' => 'tar', 'TAR633G0289' => 'tar', 'TAR636G3651' => 'tar', 'THA.LOC104800548' => 'tha', 'THA.LOC104823107' => 'tha', 'THA.LOC104823227' => 'tha', 'THA.LOC104823463' => 'tha', 'THA.LOC104826930' => 'tha', 'THA.LOC104827507' => 'tha', 'Thecc.05G083200' => 'tca', 'Thecc.09G289800' => 'tca', 'Thecc.10G104800' => 'tca', 'Thhalv10010763m.g' => 'esa', 'Thhalv10010775m.g' => 'esa', 'Thhalv10014828m.g' => 'esa', 'Thhalv10017290m.g' => 'esa', 'Thhalv10017323m.g' => 'esa', 'Thhalv10021627m.g' => 'esa', 'TPR.G23399' => 'tpr', 'TPR.G2502' => 'tpr', 'TPR.G25372' => 'tpr', 'TPR.G8933' => 'tpr', 'TWI38G2326' => 'twi', 'TWI53G1386' => 'twi', 'TWI75G0553' => 'twi', 'TWI77G0148' => 'twi', 'TWI79G1399' => 'twi', 'unitig_26.g9246' => 'ugi', 'unitig_578.g15764' => 'ugi', 'unitig_736.g22529' => 'ugi', 'unitig_744.g24692' => 'ugi', 'unitig_749.g14290' => 'ugi', 'vmacro03287' => 'vma', 'vmacro07381' => 'vma', 'vmacro08823' => 'vma', 'vmacro10291' => 'vma', 'VMungo0720G2072' => 'vmu', 'VMungo1383G3133' => 'vmu', 'Zm00001eb242600' => 'zma', 'Zm00001eb421850' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001317', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001317' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001317', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '476', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001317' ) ), 'genes' => array( 'A03p20120' => 'bna', 'A03p20130' => 'bna', 'A03p35740' => 'bna', 'A04p21100' => 'bna', 'A04p27920' => 'bna', 'A04p27930' => 'bna', 'A05p18350' => 'bna', 'A05p39040' => 'bna', 'A07p18360' => 'bna', 'A07p21270' => 'bna', 'A07p21310' => 'bna', 'A08p15900' => 'bna', 'A09p21500' => 'bna', 'A09p43440' => 'bna', 'A09p45980' => 'bna', 'A09p68960' => 'bna', 'A10p32440' => 'bna', 'Aa31LG10G7830' => 'aar', 'Aa31LG10G8120' => 'aar', 'Aa31LG1G21570' => 'aar', 'Aa31LG3G2480' => 'aar', 'Aa31LG4G12450' => 'aar', 'Aa31LG5G21590' => 'aar', 'Aa31LG5G21600' => 'aar', 'Aa31LG5G8250' => 'aar', 'Aa31sc27G60' => 'aar', 'Aa31sc95G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3606' => 'aag', 'Actinidia05450' => 'ach', 'Actinidia10396' => 'ach', 'Actinidia24185' => 'ach', 'Actinidia31284' => 'ach', 'Actinidia34710' => 'ach', 'Ah.08g210840' => 'amhyb', 'Ah.08g216040' => 'amhyb', 'AL3G21270' => 'aly', 'AL4G22560' => 'aly', 'AL4G32510' => 'aly', 'AL4G32590' => 'aly', 'AL5G33680' => 'aly', 'AL5G33710' => 'aly', 'AL6G13170' => 'aly', 'Aqoxy1G00824' => 'aox', 'Aqoxy2G01358' => 'aox', 'Aqoxy4G02859' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3U3PFL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.95H5CE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4KAB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC2QWC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFPL44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6BTHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR4K5D' => 'arhy', 'AT2G27740' => 'ath', 'AT2G36355' => 'ath', 'AT2G36410' => 'ath', 'AT3G09980' => 'ath', 'AT3G52900' => 'ath', 'AT3G52920' => 'ath', 'AT5G03660' => 'ath', 'ATR0820G174' => 'atr', 'Atru.chr3.3357' => 'acertr', 'Atru.chr8.1614' => 'acertr', 'AUR62009804' => 'cqu', 'AUR62033550' => 'cqu', 'AUR62038116' => 'cqu', 'AUR62043077' => 'cqu', 'AUR62043109' => 'cqu', 'BcaB01g00328' => 'bca', 'BcaB01g00329' => 'bca', 'BcaB01g00331' => 'bca', 'BcaB01g03839' => 'bca', 'BcaB01g03840' => 'bca', 'BcaB02g07804' => 'bca', 'BcaB02g10111' => 'bca', 'BcaB02g10112' => 'bca', 'BcaB03g11579' => 'bca', 'BcaB06g28937' => 'bca', 'BcaB06g28938' => 'bca', 'BcaC01g04255' => 'bca', 'BcaC01g05659' => 'bca', 'BcaC01g05660' => 'bca', 'BcaC02g07595' => 'bca', 'BcaC02g07596' => 'bca', 'BcaC02g07599' => 'bca', 'BcaC02g08233' => 'bca', 'BcaC02g10902' => 'bca', 'BcaC05g26952' => 'bca', 'BcaC05g29725' => 'bca', 'BcaC06g32075' => 'bca', 'BcaC06g34382' => 'bca', 'BcaC07g39653' => 'bca', 'BcaC07g39655' => 'bca', 'BcaC08g44604' => 'bca', 'BcaC08g44609' => 'bca', 'BcaNung04563' => 'bca', 'BolC3t14751H' => 'bol', 'BolC3t14752H' => 'bol', 'BolC3t16612H' => 'bol', 'BolC4t23885H' => 'bol', 'BolC4t28022H' => 'bol', 'BolC4t28023H' => 'bol', 'BolC5t31527H' => 'bol', 'BolC5t34463H' => 'bol', 'BolC6t37260H' => 'bol', 'BolC6t37265H' => 'bol', 'BolC8t50430H' => 'bol', 'BolC9t60061H' => 'bol', 'BraA03t11262Z' => 'bra', 'BraA03t11263Z' => 'bra', 'BraA03t12748Z' => 'bra', 'BraA04t17679Z' => 'bra', 'BraA04t18283Z' => 'bra', 'BraA05t22696Z' => 'bra', 'BraA07t29552Z' => 'bra', 'BraA07t29815Z' => 'bra', 'BraA07t29818Z' => 'bra', 'BraA09t37749Z' => 'bra', 'BraA09t40061Z' => 'bra', 'BraA10t45284Z' => 'bra', 'C02p63920' => 'bna', 'C03p23570' => 'bna', 'C03p23580' => 'bna', 'C03p43410' => 'bna', 'C03p83960' => 'bna', 'C04p04350' => 'bna', 'C04p23920' => 'bna', 'C05p28000' => 'bna', 'C05p58060' => 'bna', 'C06p20770' => 'bna', 'C06p20800' => 'bna', 'C08p28170' => 'bna', 'C09p73260' => 'bna', 'CAN.G1138.24' => 'can', 'CAN.G534.17' => 'can', 'CAN.G644.20' => 'can', 'CAN.G824.17' => 'can', 'CANSAT54G0979' => 'cansat', 'CANSAT56G2006' => 'cansat', 'CANSAT80G0207' => 'cansat', 'CARHR084490' => 'chi', 'CARHR120440' => 'chi', 'CARHR130650' => 'chi', 'CARHR130710' => 'chi', 'CARHR162780' => 'chi', 'CARHR162800' => 'chi', 'CARHR209640' => 'chi', 'Carub.0003s0908' => 'cru', 'Carub.0004s0849' => 'cru', 'Carub.0004s1814' => 'cru', 'Carub.0004s1821' => 'cru', 'Carub.0004s1822' => 'cru', 'Carub.0005s1937' => 'cru', 'Carub.0005s1940' => 'cru', 'Carub.0006s0257' => 'cru', 'Ca_01672_v3' => 'car', 'Ca_08972_v3' => 'car', 'Ca_10500_v3' => 'car', 'Cc01_g09640' => 'ccan', 'Cc02_g09990' => 'ccan', 'Cc06_g05380' => 'ccan', 'Cfa010072' => 'cfa', 'Cfa011239' => 'cfa', 'Cfa016558' => 'cfa', 'Ciclev10012928m.g' => 'ccl', 'Ciclev10029402m.g' => 'ccl', 'Ciclev10032972m.g' => 'ccl', 'CiPaw.09G009700' => 'cil', 'CiPaw.10G006400' => 'cil', 'CiPaw.13G037300' => 'cil', 'CiPaw.13G139900' => 'cil', 'CiPaw.14G029500' => 'cil', 'CiPaw.14G102900' => 'cil', 'ClCG01G012520' => 'cla', 'ClCG04G009830' => 'cla', 'ClCG05G021660' => 'cla', 'ClCG10G019230' => 'cla', 'COL.COLO4_19956' => 'col', 'COL.COLO4_20108' => 'col', 'COL.COLO4_29798' => 'col', 'Cpa.g.sc19.16' => 'cpa', 'Cpa.g.sc47.78' => 'cpa', 'Cpa.g.sc5.64' => 'cpa', 'CsaV3_1G014610' => 'csa', 'CsaV3_3G036960' => 'csa', 'CsaV3_5G035610' => 'csa', 'CsaV3_6G040460' => 'csa', 'CsaV3_7G016250' => 'csa', 'CSS0010573' => 'camsi', 'CSS0014590' => 'camsi', 'CSS0016769' => 'camsi', 'CSS0040261' => 'camsi', 'DCAR_003295' => 'dca', 'DCAR_007745' => 'dca', 'DCAR_009138' => 'dca', 'DCAR_010376' => 'dca', 'DCAR_013368' => 'dca', 'Dinv01490' => 'din', 'Dinv19840' => 'din', 'Dinv20807' => 'din', 'Dinv20808' => 'din', 'Dinv21243' => 'din', 'Dinv29437' => 'din', 'Dinv42584' => 'din', 'Duzib093G0422' => 'dzi', 'Duzib106G1466' => 'dzi', 'Duzib114G0983' => 'dzi', 'Duzib128G1404' => 'dzi', 'Duzib150G1320' => 'dzi', 'Duzib168G1030' => 'dzi', 'Duzib170G1003' => 'dzi', 'ECA232G3340' => 'eca', 'ECA233G0175' => 'eca', 'ECA233G0586' => 'eca', 'ECA238G4172' => 'eca', 'ECA248G0645' => 'eca', 'EL10Ac7g15782' => 'bvu', 'EL10Ac7g16971' => 'bvu', 'Eucgr.A01535' => 'egr', 'Eucgr.B03885' => 'egr', 'Eucgr.I00610' => 'egr', 'Eucgr.I00611' => 'egr', 'Eucgr.I00613' => 'egr', 'Eucgr.I00618' => 'egr', 'Eucgr.I01679' => 'egr', 'Eucgr.J01003' => 'egr', 'Eucgr.K02066' => 'egr', 'FAN05G0604' => 'fan', 'FAN05G3700' => 'fan', 'FAN09G2556' => 'fan', 'FAN11G2257' => 'fan', 'FAN19G1423' => 'fan', 'FAN21G3263' => 'fan', 'FAN23G1439' => 'fan', 'FAN23G2475' => 'fan', 'FAN25G2980' => 'fan', 'FAN26G3147' => 'fan', 'FAN28G0119' => 'fan', 'FvH4_1g24952' => 'fve', 'FvH4_1g27500' => 'fve', 'FvH4_3g09321' => 'fve', 'FvH4_3g29660' => 'fve', 'FvH4_6g18110' => 'fve', 'Glyma.03G192100' => 'gma', 'Glyma.10G202700' => 'gma', 'Glyma.11G188000' => 'gma', 'Glyma.12G086500' => 'gma', 'Glyma.19G192600' => 'gma', 'Glyma.20G187600' => 'gma', 'Gohir.A01G208000' => 'ghi', 'Gohir.A04G026850' => 'ghi', 'Gohir.A07G108100' => 'ghi', 'Gohir.A09G094100' => 'ghi', 'Gohir.A09G137500' => 'ghi', 'Gohir.D01G197400' => 'ghi', 'Gohir.D07G111900' => 'ghi', 'Gohir.D09G093700' => 'ghi', 'Gohir.D09G137100' => 'ghi', 'Gorai.001G120300' => 'gra', 'Gorai.002G241500' => 'gra', 'Gorai.006G110300' => 'gra', 'Gorai.006G157400' => 'gra', 'GSVIVG01031383001' => 'vvi', 'GSVIVG01033798001' => 'vvi', 'GSVIVG01034739001' => 'vvi', 'HanXRQChr04g0094641' => 'han', 'HanXRQChr05g0146841' => 'han', 'HanXRQChr07g0197791' => 'han', 'HanXRQChr08g0217871' => 'han', 'HanXRQChr11g0351201' => 'han', 'HanXRQChr12g0380951' => 'han', 'HanXRQChr15g0491581' => 'han', 'HanXRQChr15g0491981' => 'han', 'Haze_02591' => 'cav', 'Haze_19559' => 'cav', 'Haze_23438' => 'cav', 'Hma1.2p1_0084F.1_g043370' => 'hma', 'Hma1.2p1_0246F.1_g101750' => 'hma', 'Hma1.2p1_0352F.1_g132990' => 'hma', 'Hma1.2p1_0646F.1_g194990' => 'hma', 'HPP92_005461' => 'vpl', 'Hund04040' => 'sun', 'Hund18733' => 'sun', 'Hund19283' => 'sun', 'Lalb_Chr02g0151421' => 'lal', 'Lalb_Chr19g0136711' => 'lal', 'Lalb_Chr20g0112121' => 'lal', 'Lalb_Chr25g0288601' => 'lal', 'Lj1g0019636' => 'lja', 'Lj2A991T87' => 'lonja', 'Lj2C131G2' => 'lonja', 'Lj2C29T21' => 'lonja', 'Lj3A1002G51' => 'lonja', 'Lj3g0001526' => 'lja', 'Lj5g0018470' => 'lja', 'Lsat_1_v5_gn_0_7361' => 'lsa', 'Lsat_1_v5_gn_1_48540' => 'lsa', 'Lsat_1_v5_gn_2_95641' => 'lsa', 'Lsat_1_v5_gn_6_41721' => 'lsa', 'Lsat_1_v5_gn_6_70780' => 'lsa', 'Manes.04G007200' => 'mes', 'Manes.07G089500' => 'mes', 'Manes.08G022200' => 'mes', 'Manes.10G057100' => 'mes', 'Manes.11G158800' => 'mes', 'Mapoly0038s0078' => 'mpo', 'MBI01_g05551_MAGBIO' => 'mbi', 'MD02G1248700' => 'mdo', 'MD02G1248800' => 'mdo', 'MD03G1136300' => 'mdo', 'MD07G1067500' => 'mdo', 'MD11G1158600' => 'mdo', 'MD12G1019800' => 'mdo', 'MD12G1020200' => 'mdo', 'MD14G1017400' => 'mdo', 'Medtr1g492930' => 'mtr', 'Medtr2g085025' => 'mtr', 'Medtr7g104020' => 'mtr', 'MELO3C004756.2' => 'cme', 'MELO3C009443.2' => 'cme', 'MELO3C012362.2' => 'cme', 'MELO3C024522.2' => 'cme', 'Migut.F00895' => 'egut', 'Migut.F01642' => 'egut', 'Migut.J00976' => 'egut', 'Migut.N02509' => 'egut', 'MSTRG.17720' => 'ama', 'MSTRG.18737' => 'ama', 'MSTRG.19237' => 'ama', 'MSTRG.27523' => 'ama', 'MSTRG.5815' => 'ama', 'MSTRG.9108' => 'ama', 'Nitab4.5_0000132g0090' => 'nta', 'Nitab4.5_0000962g0030' => 'nta', 'Nitab4.5_0000963g0040' => 'nta', 'Nitab4.5_0003454g0030' => 'nta', 'Nitab4.5_0003541g0050' => 'nta', 'Nitab4.5_0005390g0050' => 'nta', 'Nitab4.5_0006089g0030' => 'nta', 'Nitab4.5_0022552g0010' => 'nta', 'Nn2g14049' => 'nnu', 'Nn6g35015' => 'nnu', 'Oeu018723.1' => 'oeu', 'Oeu030499.1' => 'oeu', 'Oeu032418.1' => 'oeu', 'Oeu039816.1' => 'oeu', 'Oeu040529.1' => 'oeu', 'Oeu042278.1' => 'oeu', 'Oeu050192.1' => 'oeu', 'Oeu050193.1' => 'oeu', 'Oeu052893.1' => 'oeu', 'Oeu058279.1' => 'oeu', 'Os02g0528100' => 'osa', 'Os04g0408600' => 'osa', 'Peaxi162Scf00002g05425' => 'pax', 'Peaxi162Scf00068g00034' => 'pax', 'Peaxi162Scf00163g00217' => 'pax', 'Peaxi162Scf00244g01120' => 'pax', 'PGR004G1543' => 'pgr', 'PGR044G2729' => 'pgr', 'PGR102G0613' => 'pgr', 'PGR142G1757' => 'pgr', 'PGSC0003DMG400002711' => 'stu', 'PGSC0003DMG400019496' => 'stu', 'PGSC0003DMG400026542' => 'stu', 'PGSC0003DMG400028170' => 'stu', 'Phvul.001G187400' => 'pvu', 'Phvul.007G104200' => 'pvu', 'Phvul.011G091600' => 'pvu', 'Potri.004G186900' => 'ptr', 'Potri.006G115400' => 'ptr', 'Potri.009G147500' => 'ptr', 'Potri.010G235600' => 'ptr', 'Pp3c4_24280' => 'ppa', 'Prupe.2G084700' => 'ppe', 'Prupe.6G121000' => 'ppe', 'Prupe.7G115700' => 'ppe', 'Psat3g035200' => 'psa', 'Psat5g255800' => 'psa', 'Psat6g176880' => 'psa', 'PSO339G3783' => 'pso', 'PSO384G1686' => 'pso', 'PSO443G0050' => 'pso', 'QL01p013415' => 'qlo', 'QL04p042565' => 'qlo', 'QL04p042580' => 'qlo', 'QL07p040067' => 'qlo', 'RcHm_v2.0_Chr3g0472381' => 'rch', 'RcHm_v2.0_Chr3g0489011' => 'rch', 'RcHm_v2.0_Chr5g0055021' => 'rch', 'Rhsim03G0079200' => 'rsi', 'Rhsim03G0079800' => 'rsi', 'Rhsim04G0134900' => 'rsi', 'Rhsim13G0106700' => 'rsi', 'RhsimUnG0042300' => 'rsi', 'Sabra04G0125900' => 'sbr', 'Sabra06G0090300' => 'sbr', 'Sabra09G0113700' => 'sbr', 'Sabra09G0116200' => 'sbr', 'Sabra10G0182700' => 'sbr', 'SalBow3G0840' => 'sbo', 'SalBow3G4143' => 'sbo', 'SalBow3G4507' => 'sbo', 'SalBow6G2283' => 'sbo', 'SalBow6G4984' => 'sbo', 'Sc02g0001090' => 'sci', 'Sc05g0003410' => 'sci', 'Sc07g0005400' => 'sci', 'Sc12g0004260' => 'sci', 'Sed0001596' => 'sed', 'Sed0004160' => 'sed', 'Sed0008393' => 'sed', 'Sed0016219' => 'sed', 'Sed0025714' => 'sed', 'SGA_v2.0_scaffold15G07423' => 'sas', 'SGA_v2.0_scaffold27G11625' => 'sas', 'SGA_v2.0_scaffold4G02307' => 'sas', 'SGA_v2.0_scaffold62G21350' => 'sas', 'SGA_v2.0_scaffold710G53496' => 'sas', 'SGA_v2.0_scaffold71G23897' => 'sas', 'SGA_v2.0_scaffold75G24791' => 'sas', 'SGA_v2.0_scaffold83G26421' => 'sas', 'Solyc10g083520.2' => 'sly', 'Solyc11g007330.2' => 'sly', 'Solyc11g066970.3' => 'sly', 'Sopen09g003940' => 'spe', 'Sopen10g032990' => 'spe', 'Sopen11g003220' => 'spe', 'Sopen11g026690' => 'spe', 'Sp3g08320' => 'spa', 'Sp4g10570' => 'spa', 'Sp4g18700' => 'spa', 'Sp4g18710' => 'spa', 'Sp5g09410' => 'spa', 'Sp5g09440' => 'spa', 'Sp6g39070' => 'spa', 'TAR369G0967' => 'tar', 'TAR623G0765' => 'tar', 'TAR633G0289' => 'tar', 'TAR636G3651' => 'tar', 'THA.LOC104800548' => 'tha', 'THA.LOC104823107' => 'tha', 'THA.LOC104823227' => 'tha', 'THA.LOC104823463' => 'tha', 'THA.LOC104826930' => 'tha', 'THA.LOC104827507' => 'tha', 'Thecc.05G083200' => 'tca', 'Thecc.09G289800' => 'tca', 'Thecc.10G104800' => 'tca', 'Thhalv10010763m.g' => 'esa', 'Thhalv10010775m.g' => 'esa', 'Thhalv10014828m.g' => 'esa', 'Thhalv10017290m.g' => 'esa', 'Thhalv10017323m.g' => 'esa', 'Thhalv10021627m.g' => 'esa', 'TPR.G23399' => 'tpr', 'TPR.G2502' => 'tpr', 'TPR.G25372' => 'tpr', 'TPR.G8933' => 'tpr', 'TWI38G2326' => 'twi', 'TWI53G1386' => 'twi', 'TWI75G0553' => 'twi', 'TWI77G0148' => 'twi', 'TWI79G1399' => 'twi', 'unitig_26.g9246' => 'ugi', 'unitig_578.g15764' => 'ugi', 'unitig_736.g22529' => 'ugi', 'unitig_744.g24692' => 'ugi', 'unitig_749.g14290' => 'ugi', 'vmacro03287' => 'vma', 'vmacro07381' => 'vma', 'vmacro08823' => 'vma', 'vmacro10291' => 'vma', 'VMungo0720G2072' => 'vmu', 'VMungo1383G3133' => 'vmu', 'Zm00001eb242600' => 'zma', 'Zm00001eb421850' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001317' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001317' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001317' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001317' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151