Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001305', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '481', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p26680' => 'bna', 'A04p20880' => 'bna', 'A04p27630' => 'bna', 'A05p09720' => 'bna', 'Aa31LG4G13820' => 'aar', 'Aa31LG5G21230' => 'aar', 'Aa31LG5G8720' => 'aar', 'Actinidia05398' => 'ach', 'Actinidia07262' => 'ach', 'Actinidia22229' => 'ach', 'Actinidia24232' => 'ach', 'Actinidia24883' => 'ach', 'Actinidia35473' => 'ach', 'Actinidia37071' => 'ach', 'Ah.08g210360' => 'amhyb', 'AL4G21260' => 'aly', 'AL4G32180' => 'aly', 'AL5G22470' => 'aly', 'Aqoxy2G01050' => 'aox', 'Aqoxy2G03288' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45DTJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RJM5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCEI7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9YQVF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D86BWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1GWNH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP0AEQ' => 'arhy', 'AT2G27310' => 'ath', 'AT2G36090' => 'ath', 'AT3G44326' => 'ath', 'ATR0081G028' => 'atr', 'ATR0579G049' => 'atr', 'ATR0626G411' => 'atr', 'Atru.chr3.3162' => 'acertr', 'Atru.chr3.3165' => 'acertr', 'Atru.chr5.1400' => 'acertr', 'Atru.chr5.2517' => 'acertr', 'Atru.chr8.1438' => 'acertr', 'Atru.chr9.1836' => 'acertr', 'AUR62006243' => 'cqu', 'AUR62028481' => 'cqu', 'AUR62038061' => 'cqu', 'AUR62038187' => 'cqu', 'BcaB01g03064' => 'bca', 'BcaB02g09385' => 'bca', 'BcaB06g28141' => 'bca', 'BcaB06g28914' => 'bca', 'BcaC01g04933' => 'bca', 'BcaC02g07632' => 'bca', 'BcaC02g08249' => 'bca', 'BcaC02g08250' => 'bca', 'BcaC02g08252' => 'bca', 'BcaC02g11710' => 'bca', 'BNapus_Darmor_BZH_scaffold_239p00140' => 'bna', 'BolC3t15538H' => 'bol', 'BolC4t22851H' => 'bol', 'BolC4t27201H' => 'bol', 'BolC4t27993H' => 'bol', 'BraA03t11879Z' => 'bra', 'BraA04t17659Z' => 'bra', 'BraA04t18258Z' => 'bra', 'BraA05t19928Z' => 'bra', 'C03p31960' => 'bna', 'C04p12100' => 'bna', 'C04p56690' => 'bna', 'C04p65140' => 'bna', 'CAN.G242.18' => 'can', 'CAN.G745.20' => 'can', 'CAN.G841.16' => 'can', 'CANSAT25G2734' => 'cansat', 'CANSAT54G0611' => 'cansat', 'CANSAT64G2696' => 'cansat', 'CARHR104560' => 'chi', 'CARHR119880' => 'chi', 'CARHR130340' => 'chi', 'Carub.0004s0794' => 'cru', 'Carub.0004s1783' => 'cru', 'Carub.0005s1004' => 'cru', 'Ca_01646_v3' => 'car', 'Ca_09027_v3' => 'car', 'Ca_09762_v3' => 'car', 'Ca_19444_v3' => 'car', 'Ca_25954_v3' => 'car', 'Cc01_g08790' => 'ccan', 'Cc01_g19610' => 'ccan', 'Cc06_g06220' => 'ccan', 'CDE02G1508' => 'cde', 'CDE04G2896' => 'cde', 'CDE08G1152' => 'cde', 'Cfa006127' => 'cfa', 'Cfa009984' => 'cfa', 'Cfa011889' => 'cfa', 'Cfa016651' => 'cfa', 'Ciclev10010153m.g' => 'ccl', 'Ciclev10010559m.g' => 'ccl', 'Ciclev10012029m.g' => 'ccl', 'Ciclev10012130m.g' => 'ccl', 'Ciclev10012142m.g' => 'ccl', 'Ciclev10013482m.g' => 'ccl', 'Ciclev10013808m.g' => 'ccl', 'Ciclev10023799m.g' => 'ccl', 'Ciclev10028740m.g' => 'ccl', 'Ciclev10028746m.g' => 'ccl', 'Ciclev10028749m.g' => 'ccl', 'Ciclev10029080m.g' => 'ccl', 'CiPaw.07G092700' => 'cil', 'CiPaw.08G104500' => 'cil', 'CiPaw.09G017700' => 'cil', 'CiPaw.10G012700' => 'cil', 'CiPaw.11G108800' => 'cil', 'CiPaw.13G132900' => 'cil', 'CiPaw.14G097700' => 'cil', 'ClCG02G022300' => 'cla', 'ClCG10G018690' => 'cla', 'COL.COLO4_09116' => 'col', 'COL.COLO4_10842' => 'col', 'COL.COLO4_22634' => 'col', 'COL.COLO4_29666' => 'col', 'Cpa.g.c31932.1' => 'cpa', 'Cpa.g.sc195.30' => 'cpa', 'Cpa.g.sc195.31' => 'cpa', 'CsaV3_3G037540' => 'csa', 'CsaV3_6G038430' => 'csa', 'CSS0001600' => 'camsi', 'CSS0018930' => 'camsi', 'CSS0023210' => 'camsi', 'CSS0030350' => 'camsi', 'CSS0031216' => 'camsi', 'DCAR_002742' => 'dca', 'DCAR_006172' => 'dca', 'DCAR_010328' => 'dca', 'DCAR_010330' => 'dca', 'DCAR_010331' => 'dca', 'DCAR_012214' => 'dca', 'DCAR_012216' => 'dca', 'DCAR_012222' => 'dca', 'DCAR_012223' => 'dca', 'DCAR_012224' => 'dca', 'DCAR_012225' => 'dca', 'DCAR_013416' => 'dca', 'DCAR_018416' => 'dca', 'Dinv08922' => 'din', 'Dinv11244' => 'din', 'Dinv21161' => 'din', 'Dinv21162' => 'din', 'Dinv22812' => 'din', 'Dinv31724' => 'din', 'Dinv32946' => 'din', 'Duzib093G0493' => 'dzi', 'Duzib128G0290' => 'dzi', 'Duzib133G1205' => 'dzi', 'Duzib138G0696' => 'dzi', 'Duzib150G0782' => 'dzi', 'Duzib168G1783' => 'dzi', 'Duzib170G0799' => 'dzi', 'ECA236G2531' => 'eca', 'ECA247G2715' => 'eca', 'ECA248G3330' => 'eca', 'EL10Ac3g06407' => 'bvu', 'EL10Ac7g16846' => 'bvu', 'Eucgr.J00526' => 'egr', 'Eucgr.K03377' => 'egr', 'FAN02G0071' => 'fan', 'FAN05G2004' => 'fan', 'FAN05G3885' => 'fan', 'FAN11G0065' => 'fan', 'FAN14G4181' => 'fan', 'FAN15G0462' => 'fan', 'FAN16G3341' => 'fan', 'FAN20G1604' => 'fan', 'FAN21G2749' => 'fan', 'FAN24G2931' => 'fan', 'FAN25G1416' => 'fan', 'FAN27G1515' => 'fan', 'FvH4_2g23740' => 'fve', 'FvH4_3g25740' => 'fve', 'FvH4_6g19530' => 'fve', 'Glyma.02G148100' => 'gma', 'Glyma.03G152300' => 'gma', 'Glyma.03G198600' => 'gma', 'Glyma.10G025700' => 'gma', 'Glyma.10G075800' => 'gma', 'Glyma.11G181200' => 'gma', 'Glyma.12G186800' => 'gma', 'Glyma.13G314700' => 'gma', 'Glyma.14G223800' => 'gma', 'Glyma.19G154800' => 'gma', 'Glyma.19G196400' => 'gma', 'Gohir.A02G095300' => 'ghi', 'Gohir.A04G059700' => 'ghi', 'Gohir.A05G079300' => 'ghi', 'Gohir.A07G111100' => 'ghi', 'Gohir.A11G121900' => 'ghi', 'Gohir.D03G088200' => 'ghi', 'Gohir.D04G096500' => 'ghi', 'Gohir.D05G082200' => 'ghi', 'Gohir.D07G114900' => 'ghi', 'Gohir.D11G127100' => 'ghi', 'Gorai.001G123100' => 'gra', 'Gorai.003G073700' => 'gra', 'Gorai.007G135800' => 'gra', 'Gorai.009G083800' => 'gra', 'Gorai.009G399200' => 'gra', 'GSVIVG01011119001' => 'vvi', 'HanXRQChr01g0018041' => 'han', 'HanXRQChr02g0034551' => 'han', 'HanXRQChr04g0098931' => 'han', 'HanXRQChr04g0118771' => 'han', 'HanXRQChr04g0123241' => 'han', 'HanXRQChr10g0282771' => 'han', 'HanXRQChr15g0485071' => 'han', 'HanXRQChr15g0485081' => 'han', 'Haze_04727' => 'cav', 'Haze_09214' => 'cav', 'Haze_19656' => 'cav', 'Haze_23343' => 'cav', 'Hma1.2p1_0820F.1_g224090' => 'hma', 'HPP92_009882' => 'vpl', 'HPP92_011809' => 'vpl', 'Lalb_Chr01g0017941' => 'lal', 'Lalb_Chr02g0142801' => 'lal', 'Lalb_Chr02g0154771' => 'lal', 'Lalb_Chr03g0028271' => 'lal', 'Lalb_Chr24g0393471' => 'lal', 'Lalb_Chr24g0393481' => 'lal', 'Lj1A258G36' => 'lonja', 'Lj1A46T42' => 'lonja', 'Lj1g0010769' => 'lja', 'Lj1P258T28' => 'lonja', 'Lj2A969G69' => 'lonja', 'Lj2C969G11' => 'lonja', 'Lj2C969T12' => 'lonja', 'Lj2C971G3' => 'lonja', 'Lj2C971T4' => 'lonja', 'Lj2P144T15' => 'lonja', 'Lj2P151T26' => 'lonja', 'Lj2P969T21' => 'lonja', 'Lj2P969T43' => 'lonja', 'Lj2P970T14' => 'lonja', 'Lj2P970T27' => 'lonja', 'Lj2P970T38' => 'lonja', 'Lj2P970T53' => 'lonja', 'Lj2P970T55' => 'lonja', 'Lj3g0009564' => 'lja', 'Lj3g0017769' => 'lja', 'Lj3g0024723' => 'lja', 'Lj5g0015050' => 'lja', 'Lj5g0021329' => 'lja', 'Lj6P612T10' => 'lonja', 'Lsat_1_v5_gn_1_59920' => 'lsa', 'Lsat_1_v5_gn_1_85820' => 'lsa', 'Lsat_1_v5_gn_1_86140' => 'lsa', 'Lsat_1_v5_gn_1_86180' => 'lsa', 'Lsat_1_v5_gn_1_86240' => 'lsa', 'Lsat_1_v5_gn_3_82201' => 'lsa', 'Lsat_1_v5_gn_6_37100' => 'lsa', 'Lsat_1_v5_gn_8_56220' => 'lsa', 'Lsat_1_v5_gn_9_4061' => 'lsa', 'Lsat_1_v5_gn_9_71981' => 'lsa', 'Lsat_1_v5_gn_9_72200' => 'lsa', 'Lsat_1_v5_gn_9_72220' => 'lsa', 'Lsat_1_v5_gn_9_72840' => 'lsa', 'Lsat_1_v5_gn_9_73000' => 'lsa', 'Lsat_1_v5_gn_9_81961' => 'lsa', 'Manes.01G000434' => 'mes', 'Manes.01G208700' => 'mes', 'Manes.09G051600' => 'mes', 'Manes.11G164500' => 'mes', 'Mapoly0027s0014' => 'mpo', 'MBI01_g41238_MAGBIO' => 'mbi', 'MBI01_g44955_MAGBIO' => 'mbi', 'MBI04_g19008_MAGBIO' => 'mbi', 'MBI17_g40298_MAGBIO' => 'mbi', 'MD03G1150200' => 'mdo', 'MD03G1150400' => 'mdo', 'MD03G1267000' => 'mdo', 'MD11G1169600' => 'mdo', 'MD11G1169800' => 'mdo', 'MD11G1287400' => 'mdo', 'MD12G1031600' => 'mdo', 'MD14G1031900' => 'mdo', 'Medtr1g058490' => 'mtr', 'Medtr1g060460' => 'mtr', 'Medtr1g072360' => 'mtr', 'Medtr2g086920' => 'mtr', 'Medtr3g466280' => 'mtr', 'Medtr3g466300' => 'mtr', 'Medtr3g466330' => 'mtr', 'Medtr3g466350' => 'mtr', 'Medtr4g052460' => 'mtr', 'Medtr5g013660' => 'mtr', 'Medtr7g105320' => 'mtr', 'Medtr8g021080' => 'mtr', 'Medtr8g021090' => 'mtr', 'Medtr8g022730' => 'mtr', 'MELO3C009497.2' => 'cme', 'MELO3C014507.2' => 'cme', 'Migut.D02365' => 'egut', 'Migut.J00998' => 'egut', 'Migut.L01805' => 'egut', 'Migut.N02471' => 'egut', 'MSTRG.17698' => 'ama', 'MSTRG.18773' => 'ama', 'MSTRG.19279' => 'ama', 'MSTRG.21567' => 'ama', 'MSTRG.5867' => 'ama', 'Nitab4.5_0000731g0010' => 'nta', 'Nitab4.5_0001028g0070' => 'nta', 'Nitab4.5_0001933g0130' => 'nta', 'Nitab4.5_0002036g0040' => 'nta', 'Nitab4.5_0008177g0020' => 'nta', 'Nn1g02184' => 'nnu', 'Nn2g14229' => 'nnu', 'Nn6g34804' => 'nnu', 'Oeu015964.1' => 'oeu', 'Oeu022879.1' => 'oeu', 'Oeu047417.1' => 'oeu', 'Oeu047834.1' => 'oeu', 'Oeu051601.1' => 'oeu', 'Oeu058570.1' => 'oeu', 'Os01g0685300' => 'osa', 'Os02g0535901' => 'osa', 'Os04g0414500' => 'osa', 'Os11g0155100' => 'osa', 'Os12g0156500' => 'osa', 'Peaxi162Scf00013g00132' => 'pax', 'Peaxi162Scf00069g00003' => 'pax', 'Peaxi162Scf00096g00826' => 'pax', 'Peaxi162Scf00224g00034' => 'pax', 'Peaxi162Scf00338g00064' => 'pax', 'Peaxi162Scf00345g01028' => 'pax', 'PGR031G2343' => 'pgr', 'PGR044G0094' => 'pgr', 'PGR044G1888' => 'pgr', 'PGR102G1477' => 'pgr', 'PGR119G1239' => 'pgr', 'PGR142G3875' => 'pgr', 'PGSC0003DMG400026346' => 'stu', 'PGSC0003DMG400028160' => 'stu', 'Phvul.001G149900' => 'pvu', 'Phvul.001G192900' => 'pvu', 'Phvul.005G121900' => 'pvu', 'Phvul.007G171100' => 'pvu', 'Phvul.011G096300' => 'pvu', 'Potri.001G452000' => 'ptr', 'Potri.002G054500' => 'ptr', 'Potri.004G199300' => 'ptr', 'Potri.005G208200' => 'ptr', 'Potri.006G208400' => 'ptr', 'Potri.009G160700' => 'ptr', 'Pp3c20_18520' => 'ppa', 'Pp3c23_16130' => 'ppa', 'Pp3c23_3650' => 'ppa', 'Prupe.6G137300' => 'ppe', 'Prupe.7G100900' => 'ppe', 'Prupe.8G242700' => 'ppe', 'Psat3g031200' => 'psa', 'Psat5g260120' => 'psa', 'Psat6g060560' => 'psa', 'Psat7g186440' => 'psa', 'PSO170G3673' => 'pso', 'PSO302G0139' => 'pso', 'PSO339G4685' => 'pso', 'PSO339G5488' => 'pso', 'PSO384G0232' => 'pso', 'PSO801G0103' => 'pso', 'QL01p011805' => 'qlo', 'QL02p027135' => 'qlo', 'QL07p038097' => 'qlo', 'QL08p000221' => 'qlo', 'QL08p000251' => 'qlo', 'QL12p022121' => 'qlo', 'RcHm_v2.0_Chr3g0474871' => 'rch', 'RcHm_v2.0_Chr5g0046101' => 'rch', 'RcHm_v2.0_Chr6g0291231' => 'rch', 'Rhsim01G0203100' => 'rsi', 'Rhsim01G0203200' => 'rsi', 'Rhsim01G0203300' => 'rsi', 'Rhsim01G0203600' => 'rsi', 'Rhsim01G0275400' => 'rsi', 'Rhsim03G0069700' => 'rsi', 'Rhsim13G0195000' => 'rsi', 'Sabra02G0044300' => 'sbr', 'Sabra04G0134400' => 'sbr', 'Sabra05G0158400' => 'sbr', 'Sabra06G0160300' => 'sbr', 'Sabra09G0125700' => 'sbr', 'Sabra16G0305200' => 'sbr', 'SalBow3G2393' => 'sbo', 'SalBow3G4144' => 'sbo', 'SalBow4G1376' => 'sbo', 'SalBow5G5688' => 'sbo', 'SalBow6G5902' => 'sbo', 'Sc02g0000450' => 'sci', 'Sc19g0004440' => 'sci', 'Sed0025213' => 'sed', 'Sed0027957' => 'sed', 'SEGI_09392' => 'sgi', 'SEGI_11383' => 'sgi', 'SEGI_16106' => 'sgi', 'SEGI_17994' => 'sgi', 'SEGI_21889' => 'sgi', 'SEGI_26855' => 'sgi', 'SEGI_27650' => 'sgi', 'SEGI_31567' => 'sgi', 'SEGI_31875' => 'sgi', 'SEGI_32242' => 'sgi', 'SEGI_32330' => 'sgi', 'SEGI_33640' => 'sgi', 'SEGI_40647' => 'sgi', 'SEGI_41552' => 'sgi', 'SGA_v2.0_scaffold13G06693' => 'sas', 'SGA_v2.0_scaffold177G39440' => 'sas', 'SGA_v2.0_scaffold36G14254' => 'sas', 'SGA_v2.0_scaffold7G03997' => 'sas', 'SMO358G0574' => 'smo', 'Solyc09g065020.4' => 'sly', 'Solyc10g083230.1' => 'sly', 'Solyc11g068710.3' => 'sly', 'Sopen09g026750' => 'spe', 'Sopen10g032710' => 'spe', 'Sopen11g027420' => 'spe', 'Sp4g10120' => 'spa', 'Sp4g18320' => 'spa', 'Sp5g16910' => 'spa', 'TAR362G0290' => 'tar', 'TAR623G1074' => 'tar', 'TAR633G1115' => 'tar', 'TAR633G1388' => 'tar', 'TAR636G0436' => 'tar', 'TAR636G1412' => 'tar', 'THA.LOC104799555' => 'tha', 'THA.LOC104800515' => 'tha', 'THA.LOC104817554' => 'tha', 'THA.LOC104820728' => 'tha', 'THA.LOC104826437' => 'tha', 'Thecc.01G281400' => 'tca', 'Thecc.03G216100' => 'tca', 'Thecc.05G096200' => 'tca', 'Thecc.09G278000' => 'tca', 'Thecc.09G278100' => 'tca', 'Thhalv10002035m.g' => 'esa', 'Thhalv10016952m.g' => 'esa', 'TPR.G11608' => 'tpr', 'TPR.G15178' => 'tpr', 'TPR.G1585' => 'tpr', 'TPR.G16659' => 'tpr', 'TPR.G16662' => 'tpr', 'TPR.G16673' => 'tpr', 'TPR.G17223' => 'tpr', 'TPR.G23325' => 'tpr', 'TPR.G27006' => 'tpr', 'TPR.G32758' => 'tpr', 'TPR.G36506' => 'tpr', 'TPR.G39610' => 'tpr', 'TPR.G4529' => 'tpr', 'TWI09G0769' => 'twi', 'TWI23G1064' => 'twi', 'TWI39G0306' => 'twi', 'TWI39G0321' => 'twi', 'TWI39G0995' => 'twi', 'TWI53G0879' => 'twi', 'TWI63G0398' => 'twi', 'TWI79G0358' => 'twi', 'TWI79G1506' => 'twi', 'unitig_26.g10153' => 'ugi', 'unitig_26.g9258' => 'ugi', 'unitig_749.g13742' => 'ugi', 'unitig_8.g3660' => 'ugi', 'unitig_899.g15375' => 'ugi', 'VMungo0720G2940' => 'vmu', 'VMungo1080G0702' => 'vmu', 'VMungo1127G0911' => 'vmu', 'VMungo1383G0438' => 'vmu', 'VMungo1383G1863' => 'vmu', 'Zm00001eb017340' => 'zma', 'Zm00001eb083710' => 'zma', 'Zm00001eb197220' => 'zma', 'Zm00001eb197260' => 'zma', 'Zm00001eb242900' => 'zma', 'Zm00001eb421990' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001305', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001305' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001305', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '481', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001305' ) ), 'genes' => array( 'A03p26680' => 'bna', 'A04p20880' => 'bna', 'A04p27630' => 'bna', 'A05p09720' => 'bna', 'Aa31LG4G13820' => 'aar', 'Aa31LG5G21230' => 'aar', 'Aa31LG5G8720' => 'aar', 'Actinidia05398' => 'ach', 'Actinidia07262' => 'ach', 'Actinidia22229' => 'ach', 'Actinidia24232' => 'ach', 'Actinidia24883' => 'ach', 'Actinidia35473' => 'ach', 'Actinidia37071' => 'ach', 'Ah.08g210360' => 'amhyb', 'AL4G21260' => 'aly', 'AL4G32180' => 'aly', 'AL5G22470' => 'aly', 'Aqoxy2G01050' => 'aox', 'Aqoxy2G03288' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45DTJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RJM5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCEI7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9YQVF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D86BWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1GWNH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP0AEQ' => 'arhy', 'AT2G27310' => 'ath', 'AT2G36090' => 'ath', 'AT3G44326' => 'ath', 'ATR0081G028' => 'atr', 'ATR0579G049' => 'atr', 'ATR0626G411' => 'atr', 'Atru.chr3.3162' => 'acertr', 'Atru.chr3.3165' => 'acertr', 'Atru.chr5.1400' => 'acertr', 'Atru.chr5.2517' => 'acertr', 'Atru.chr8.1438' => 'acertr', 'Atru.chr9.1836' => 'acertr', 'AUR62006243' => 'cqu', 'AUR62028481' => 'cqu', 'AUR62038061' => 'cqu', 'AUR62038187' => 'cqu', 'BcaB01g03064' => 'bca', 'BcaB02g09385' => 'bca', 'BcaB06g28141' => 'bca', 'BcaB06g28914' => 'bca', 'BcaC01g04933' => 'bca', 'BcaC02g07632' => 'bca', 'BcaC02g08249' => 'bca', 'BcaC02g08250' => 'bca', 'BcaC02g08252' => 'bca', 'BcaC02g11710' => 'bca', 'BNapus_Darmor_BZH_scaffold_239p00140' => 'bna', 'BolC3t15538H' => 'bol', 'BolC4t22851H' => 'bol', 'BolC4t27201H' => 'bol', 'BolC4t27993H' => 'bol', 'BraA03t11879Z' => 'bra', 'BraA04t17659Z' => 'bra', 'BraA04t18258Z' => 'bra', 'BraA05t19928Z' => 'bra', 'C03p31960' => 'bna', 'C04p12100' => 'bna', 'C04p56690' => 'bna', 'C04p65140' => 'bna', 'CAN.G242.18' => 'can', 'CAN.G745.20' => 'can', 'CAN.G841.16' => 'can', 'CANSAT25G2734' => 'cansat', 'CANSAT54G0611' => 'cansat', 'CANSAT64G2696' => 'cansat', 'CARHR104560' => 'chi', 'CARHR119880' => 'chi', 'CARHR130340' => 'chi', 'Carub.0004s0794' => 'cru', 'Carub.0004s1783' => 'cru', 'Carub.0005s1004' => 'cru', 'Ca_01646_v3' => 'car', 'Ca_09027_v3' => 'car', 'Ca_09762_v3' => 'car', 'Ca_19444_v3' => 'car', 'Ca_25954_v3' => 'car', 'Cc01_g08790' => 'ccan', 'Cc01_g19610' => 'ccan', 'Cc06_g06220' => 'ccan', 'CDE02G1508' => 'cde', 'CDE04G2896' => 'cde', 'CDE08G1152' => 'cde', 'Cfa006127' => 'cfa', 'Cfa009984' => 'cfa', 'Cfa011889' => 'cfa', 'Cfa016651' => 'cfa', 'Ciclev10010153m.g' => 'ccl', 'Ciclev10010559m.g' => 'ccl', 'Ciclev10012029m.g' => 'ccl', 'Ciclev10012130m.g' => 'ccl', 'Ciclev10012142m.g' => 'ccl', 'Ciclev10013482m.g' => 'ccl', 'Ciclev10013808m.g' => 'ccl', 'Ciclev10023799m.g' => 'ccl', 'Ciclev10028740m.g' => 'ccl', 'Ciclev10028746m.g' => 'ccl', 'Ciclev10028749m.g' => 'ccl', 'Ciclev10029080m.g' => 'ccl', 'CiPaw.07G092700' => 'cil', 'CiPaw.08G104500' => 'cil', 'CiPaw.09G017700' => 'cil', 'CiPaw.10G012700' => 'cil', 'CiPaw.11G108800' => 'cil', 'CiPaw.13G132900' => 'cil', 'CiPaw.14G097700' => 'cil', 'ClCG02G022300' => 'cla', 'ClCG10G018690' => 'cla', 'COL.COLO4_09116' => 'col', 'COL.COLO4_10842' => 'col', 'COL.COLO4_22634' => 'col', 'COL.COLO4_29666' => 'col', 'Cpa.g.c31932.1' => 'cpa', 'Cpa.g.sc195.30' => 'cpa', 'Cpa.g.sc195.31' => 'cpa', 'CsaV3_3G037540' => 'csa', 'CsaV3_6G038430' => 'csa', 'CSS0001600' => 'camsi', 'CSS0018930' => 'camsi', 'CSS0023210' => 'camsi', 'CSS0030350' => 'camsi', 'CSS0031216' => 'camsi', 'DCAR_002742' => 'dca', 'DCAR_006172' => 'dca', 'DCAR_010328' => 'dca', 'DCAR_010330' => 'dca', 'DCAR_010331' => 'dca', 'DCAR_012214' => 'dca', 'DCAR_012216' => 'dca', 'DCAR_012222' => 'dca', 'DCAR_012223' => 'dca', 'DCAR_012224' => 'dca', 'DCAR_012225' => 'dca', 'DCAR_013416' => 'dca', 'DCAR_018416' => 'dca', 'Dinv08922' => 'din', 'Dinv11244' => 'din', 'Dinv21161' => 'din', 'Dinv21162' => 'din', 'Dinv22812' => 'din', 'Dinv31724' => 'din', 'Dinv32946' => 'din', 'Duzib093G0493' => 'dzi', 'Duzib128G0290' => 'dzi', 'Duzib133G1205' => 'dzi', 'Duzib138G0696' => 'dzi', 'Duzib150G0782' => 'dzi', 'Duzib168G1783' => 'dzi', 'Duzib170G0799' => 'dzi', 'ECA236G2531' => 'eca', 'ECA247G2715' => 'eca', 'ECA248G3330' => 'eca', 'EL10Ac3g06407' => 'bvu', 'EL10Ac7g16846' => 'bvu', 'Eucgr.J00526' => 'egr', 'Eucgr.K03377' => 'egr', 'FAN02G0071' => 'fan', 'FAN05G2004' => 'fan', 'FAN05G3885' => 'fan', 'FAN11G0065' => 'fan', 'FAN14G4181' => 'fan', 'FAN15G0462' => 'fan', 'FAN16G3341' => 'fan', 'FAN20G1604' => 'fan', 'FAN21G2749' => 'fan', 'FAN24G2931' => 'fan', 'FAN25G1416' => 'fan', 'FAN27G1515' => 'fan', 'FvH4_2g23740' => 'fve', 'FvH4_3g25740' => 'fve', 'FvH4_6g19530' => 'fve', 'Glyma.02G148100' => 'gma', 'Glyma.03G152300' => 'gma', 'Glyma.03G198600' => 'gma', 'Glyma.10G025700' => 'gma', 'Glyma.10G075800' => 'gma', 'Glyma.11G181200' => 'gma', 'Glyma.12G186800' => 'gma', 'Glyma.13G314700' => 'gma', 'Glyma.14G223800' => 'gma', 'Glyma.19G154800' => 'gma', 'Glyma.19G196400' => 'gma', 'Gohir.A02G095300' => 'ghi', 'Gohir.A04G059700' => 'ghi', 'Gohir.A05G079300' => 'ghi', 'Gohir.A07G111100' => 'ghi', 'Gohir.A11G121900' => 'ghi', 'Gohir.D03G088200' => 'ghi', 'Gohir.D04G096500' => 'ghi', 'Gohir.D05G082200' => 'ghi', 'Gohir.D07G114900' => 'ghi', 'Gohir.D11G127100' => 'ghi', 'Gorai.001G123100' => 'gra', 'Gorai.003G073700' => 'gra', 'Gorai.007G135800' => 'gra', 'Gorai.009G083800' => 'gra', 'Gorai.009G399200' => 'gra', 'GSVIVG01011119001' => 'vvi', 'HanXRQChr01g0018041' => 'han', 'HanXRQChr02g0034551' => 'han', 'HanXRQChr04g0098931' => 'han', 'HanXRQChr04g0118771' => 'han', 'HanXRQChr04g0123241' => 'han', 'HanXRQChr10g0282771' => 'han', 'HanXRQChr15g0485071' => 'han', 'HanXRQChr15g0485081' => 'han', 'Haze_04727' => 'cav', 'Haze_09214' => 'cav', 'Haze_19656' => 'cav', 'Haze_23343' => 'cav', 'Hma1.2p1_0820F.1_g224090' => 'hma', 'HPP92_009882' => 'vpl', 'HPP92_011809' => 'vpl', 'Lalb_Chr01g0017941' => 'lal', 'Lalb_Chr02g0142801' => 'lal', 'Lalb_Chr02g0154771' => 'lal', 'Lalb_Chr03g0028271' => 'lal', 'Lalb_Chr24g0393471' => 'lal', 'Lalb_Chr24g0393481' => 'lal', 'Lj1A258G36' => 'lonja', 'Lj1A46T42' => 'lonja', 'Lj1g0010769' => 'lja', 'Lj1P258T28' => 'lonja', 'Lj2A969G69' => 'lonja', 'Lj2C969G11' => 'lonja', 'Lj2C969T12' => 'lonja', 'Lj2C971G3' => 'lonja', 'Lj2C971T4' => 'lonja', 'Lj2P144T15' => 'lonja', 'Lj2P151T26' => 'lonja', 'Lj2P969T21' => 'lonja', 'Lj2P969T43' => 'lonja', 'Lj2P970T14' => 'lonja', 'Lj2P970T27' => 'lonja', 'Lj2P970T38' => 'lonja', 'Lj2P970T53' => 'lonja', 'Lj2P970T55' => 'lonja', 'Lj3g0009564' => 'lja', 'Lj3g0017769' => 'lja', 'Lj3g0024723' => 'lja', 'Lj5g0015050' => 'lja', 'Lj5g0021329' => 'lja', 'Lj6P612T10' => 'lonja', 'Lsat_1_v5_gn_1_59920' => 'lsa', 'Lsat_1_v5_gn_1_85820' => 'lsa', 'Lsat_1_v5_gn_1_86140' => 'lsa', 'Lsat_1_v5_gn_1_86180' => 'lsa', 'Lsat_1_v5_gn_1_86240' => 'lsa', 'Lsat_1_v5_gn_3_82201' => 'lsa', 'Lsat_1_v5_gn_6_37100' => 'lsa', 'Lsat_1_v5_gn_8_56220' => 'lsa', 'Lsat_1_v5_gn_9_4061' => 'lsa', 'Lsat_1_v5_gn_9_71981' => 'lsa', 'Lsat_1_v5_gn_9_72200' => 'lsa', 'Lsat_1_v5_gn_9_72220' => 'lsa', 'Lsat_1_v5_gn_9_72840' => 'lsa', 'Lsat_1_v5_gn_9_73000' => 'lsa', 'Lsat_1_v5_gn_9_81961' => 'lsa', 'Manes.01G000434' => 'mes', 'Manes.01G208700' => 'mes', 'Manes.09G051600' => 'mes', 'Manes.11G164500' => 'mes', 'Mapoly0027s0014' => 'mpo', 'MBI01_g41238_MAGBIO' => 'mbi', 'MBI01_g44955_MAGBIO' => 'mbi', 'MBI04_g19008_MAGBIO' => 'mbi', 'MBI17_g40298_MAGBIO' => 'mbi', 'MD03G1150200' => 'mdo', 'MD03G1150400' => 'mdo', 'MD03G1267000' => 'mdo', 'MD11G1169600' => 'mdo', 'MD11G1169800' => 'mdo', 'MD11G1287400' => 'mdo', 'MD12G1031600' => 'mdo', 'MD14G1031900' => 'mdo', 'Medtr1g058490' => 'mtr', 'Medtr1g060460' => 'mtr', 'Medtr1g072360' => 'mtr', 'Medtr2g086920' => 'mtr', 'Medtr3g466280' => 'mtr', 'Medtr3g466300' => 'mtr', 'Medtr3g466330' => 'mtr', 'Medtr3g466350' => 'mtr', 'Medtr4g052460' => 'mtr', 'Medtr5g013660' => 'mtr', 'Medtr7g105320' => 'mtr', 'Medtr8g021080' => 'mtr', 'Medtr8g021090' => 'mtr', 'Medtr8g022730' => 'mtr', 'MELO3C009497.2' => 'cme', 'MELO3C014507.2' => 'cme', 'Migut.D02365' => 'egut', 'Migut.J00998' => 'egut', 'Migut.L01805' => 'egut', 'Migut.N02471' => 'egut', 'MSTRG.17698' => 'ama', 'MSTRG.18773' => 'ama', 'MSTRG.19279' => 'ama', 'MSTRG.21567' => 'ama', 'MSTRG.5867' => 'ama', 'Nitab4.5_0000731g0010' => 'nta', 'Nitab4.5_0001028g0070' => 'nta', 'Nitab4.5_0001933g0130' => 'nta', 'Nitab4.5_0002036g0040' => 'nta', 'Nitab4.5_0008177g0020' => 'nta', 'Nn1g02184' => 'nnu', 'Nn2g14229' => 'nnu', 'Nn6g34804' => 'nnu', 'Oeu015964.1' => 'oeu', 'Oeu022879.1' => 'oeu', 'Oeu047417.1' => 'oeu', 'Oeu047834.1' => 'oeu', 'Oeu051601.1' => 'oeu', 'Oeu058570.1' => 'oeu', 'Os01g0685300' => 'osa', 'Os02g0535901' => 'osa', 'Os04g0414500' => 'osa', 'Os11g0155100' => 'osa', 'Os12g0156500' => 'osa', 'Peaxi162Scf00013g00132' => 'pax', 'Peaxi162Scf00069g00003' => 'pax', 'Peaxi162Scf00096g00826' => 'pax', 'Peaxi162Scf00224g00034' => 'pax', 'Peaxi162Scf00338g00064' => 'pax', 'Peaxi162Scf00345g01028' => 'pax', 'PGR031G2343' => 'pgr', 'PGR044G0094' => 'pgr', 'PGR044G1888' => 'pgr', 'PGR102G1477' => 'pgr', 'PGR119G1239' => 'pgr', 'PGR142G3875' => 'pgr', 'PGSC0003DMG400026346' => 'stu', 'PGSC0003DMG400028160' => 'stu', 'Phvul.001G149900' => 'pvu', 'Phvul.001G192900' => 'pvu', 'Phvul.005G121900' => 'pvu', 'Phvul.007G171100' => 'pvu', 'Phvul.011G096300' => 'pvu', 'Potri.001G452000' => 'ptr', 'Potri.002G054500' => 'ptr', 'Potri.004G199300' => 'ptr', 'Potri.005G208200' => 'ptr', 'Potri.006G208400' => 'ptr', 'Potri.009G160700' => 'ptr', 'Pp3c20_18520' => 'ppa', 'Pp3c23_16130' => 'ppa', 'Pp3c23_3650' => 'ppa', 'Prupe.6G137300' => 'ppe', 'Prupe.7G100900' => 'ppe', 'Prupe.8G242700' => 'ppe', 'Psat3g031200' => 'psa', 'Psat5g260120' => 'psa', 'Psat6g060560' => 'psa', 'Psat7g186440' => 'psa', 'PSO170G3673' => 'pso', 'PSO302G0139' => 'pso', 'PSO339G4685' => 'pso', 'PSO339G5488' => 'pso', 'PSO384G0232' => 'pso', 'PSO801G0103' => 'pso', 'QL01p011805' => 'qlo', 'QL02p027135' => 'qlo', 'QL07p038097' => 'qlo', 'QL08p000221' => 'qlo', 'QL08p000251' => 'qlo', 'QL12p022121' => 'qlo', 'RcHm_v2.0_Chr3g0474871' => 'rch', 'RcHm_v2.0_Chr5g0046101' => 'rch', 'RcHm_v2.0_Chr6g0291231' => 'rch', 'Rhsim01G0203100' => 'rsi', 'Rhsim01G0203200' => 'rsi', 'Rhsim01G0203300' => 'rsi', 'Rhsim01G0203600' => 'rsi', 'Rhsim01G0275400' => 'rsi', 'Rhsim03G0069700' => 'rsi', 'Rhsim13G0195000' => 'rsi', 'Sabra02G0044300' => 'sbr', 'Sabra04G0134400' => 'sbr', 'Sabra05G0158400' => 'sbr', 'Sabra06G0160300' => 'sbr', 'Sabra09G0125700' => 'sbr', 'Sabra16G0305200' => 'sbr', 'SalBow3G2393' => 'sbo', 'SalBow3G4144' => 'sbo', 'SalBow4G1376' => 'sbo', 'SalBow5G5688' => 'sbo', 'SalBow6G5902' => 'sbo', 'Sc02g0000450' => 'sci', 'Sc19g0004440' => 'sci', 'Sed0025213' => 'sed', 'Sed0027957' => 'sed', 'SEGI_09392' => 'sgi', 'SEGI_11383' => 'sgi', 'SEGI_16106' => 'sgi', 'SEGI_17994' => 'sgi', 'SEGI_21889' => 'sgi', 'SEGI_26855' => 'sgi', 'SEGI_27650' => 'sgi', 'SEGI_31567' => 'sgi', 'SEGI_31875' => 'sgi', 'SEGI_32242' => 'sgi', 'SEGI_32330' => 'sgi', 'SEGI_33640' => 'sgi', 'SEGI_40647' => 'sgi', 'SEGI_41552' => 'sgi', 'SGA_v2.0_scaffold13G06693' => 'sas', 'SGA_v2.0_scaffold177G39440' => 'sas', 'SGA_v2.0_scaffold36G14254' => 'sas', 'SGA_v2.0_scaffold7G03997' => 'sas', 'SMO358G0574' => 'smo', 'Solyc09g065020.4' => 'sly', 'Solyc10g083230.1' => 'sly', 'Solyc11g068710.3' => 'sly', 'Sopen09g026750' => 'spe', 'Sopen10g032710' => 'spe', 'Sopen11g027420' => 'spe', 'Sp4g10120' => 'spa', 'Sp4g18320' => 'spa', 'Sp5g16910' => 'spa', 'TAR362G0290' => 'tar', 'TAR623G1074' => 'tar', 'TAR633G1115' => 'tar', 'TAR633G1388' => 'tar', 'TAR636G0436' => 'tar', 'TAR636G1412' => 'tar', 'THA.LOC104799555' => 'tha', 'THA.LOC104800515' => 'tha', 'THA.LOC104817554' => 'tha', 'THA.LOC104820728' => 'tha', 'THA.LOC104826437' => 'tha', 'Thecc.01G281400' => 'tca', 'Thecc.03G216100' => 'tca', 'Thecc.05G096200' => 'tca', 'Thecc.09G278000' => 'tca', 'Thecc.09G278100' => 'tca', 'Thhalv10002035m.g' => 'esa', 'Thhalv10016952m.g' => 'esa', 'TPR.G11608' => 'tpr', 'TPR.G15178' => 'tpr', 'TPR.G1585' => 'tpr', 'TPR.G16659' => 'tpr', 'TPR.G16662' => 'tpr', 'TPR.G16673' => 'tpr', 'TPR.G17223' => 'tpr', 'TPR.G23325' => 'tpr', 'TPR.G27006' => 'tpr', 'TPR.G32758' => 'tpr', 'TPR.G36506' => 'tpr', 'TPR.G39610' => 'tpr', 'TPR.G4529' => 'tpr', 'TWI09G0769' => 'twi', 'TWI23G1064' => 'twi', 'TWI39G0306' => 'twi', 'TWI39G0321' => 'twi', 'TWI39G0995' => 'twi', 'TWI53G0879' => 'twi', 'TWI63G0398' => 'twi', 'TWI79G0358' => 'twi', 'TWI79G1506' => 'twi', 'unitig_26.g10153' => 'ugi', 'unitig_26.g9258' => 'ugi', 'unitig_749.g13742' => 'ugi', 'unitig_8.g3660' => 'ugi', 'unitig_899.g15375' => 'ugi', 'VMungo0720G2940' => 'vmu', 'VMungo1080G0702' => 'vmu', 'VMungo1127G0911' => 'vmu', 'VMungo1383G0438' => 'vmu', 'VMungo1383G1863' => 'vmu', 'Zm00001eb017340' => 'zma', 'Zm00001eb083710' => 'zma', 'Zm00001eb197220' => 'zma', 'Zm00001eb197260' => 'zma', 'Zm00001eb242900' => 'zma', 'Zm00001eb421990' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001305' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001305' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001305' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001305' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001305', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '481', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p26680' => 'bna', 'A04p20880' => 'bna', 'A04p27630' => 'bna', 'A05p09720' => 'bna', 'Aa31LG4G13820' => 'aar', 'Aa31LG5G21230' => 'aar', 'Aa31LG5G8720' => 'aar', 'Actinidia05398' => 'ach', 'Actinidia07262' => 'ach', 'Actinidia22229' => 'ach', 'Actinidia24232' => 'ach', 'Actinidia24883' => 'ach', 'Actinidia35473' => 'ach', 'Actinidia37071' => 'ach', 'Ah.08g210360' => 'amhyb', 'AL4G21260' => 'aly', 'AL4G32180' => 'aly', 'AL5G22470' => 'aly', 'Aqoxy2G01050' => 'aox', 'Aqoxy2G03288' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45DTJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RJM5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCEI7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9YQVF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D86BWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1GWNH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP0AEQ' => 'arhy', 'AT2G27310' => 'ath', 'AT2G36090' => 'ath', 'AT3G44326' => 'ath', 'ATR0081G028' => 'atr', 'ATR0579G049' => 'atr', 'ATR0626G411' => 'atr', 'Atru.chr3.3162' => 'acertr', 'Atru.chr3.3165' => 'acertr', 'Atru.chr5.1400' => 'acertr', 'Atru.chr5.2517' => 'acertr', 'Atru.chr8.1438' => 'acertr', 'Atru.chr9.1836' => 'acertr', 'AUR62006243' => 'cqu', 'AUR62028481' => 'cqu', 'AUR62038061' => 'cqu', 'AUR62038187' => 'cqu', 'BcaB01g03064' => 'bca', 'BcaB02g09385' => 'bca', 'BcaB06g28141' => 'bca', 'BcaB06g28914' => 'bca', 'BcaC01g04933' => 'bca', 'BcaC02g07632' => 'bca', 'BcaC02g08249' => 'bca', 'BcaC02g08250' => 'bca', 'BcaC02g08252' => 'bca', 'BcaC02g11710' => 'bca', 'BNapus_Darmor_BZH_scaffold_239p00140' => 'bna', 'BolC3t15538H' => 'bol', 'BolC4t22851H' => 'bol', 'BolC4t27201H' => 'bol', 'BolC4t27993H' => 'bol', 'BraA03t11879Z' => 'bra', 'BraA04t17659Z' => 'bra', 'BraA04t18258Z' => 'bra', 'BraA05t19928Z' => 'bra', 'C03p31960' => 'bna', 'C04p12100' => 'bna', 'C04p56690' => 'bna', 'C04p65140' => 'bna', 'CAN.G242.18' => 'can', 'CAN.G745.20' => 'can', 'CAN.G841.16' => 'can', 'CANSAT25G2734' => 'cansat', 'CANSAT54G0611' => 'cansat', 'CANSAT64G2696' => 'cansat', 'CARHR104560' => 'chi', 'CARHR119880' => 'chi', 'CARHR130340' => 'chi', 'Carub.0004s0794' => 'cru', 'Carub.0004s1783' => 'cru', 'Carub.0005s1004' => 'cru', 'Ca_01646_v3' => 'car', 'Ca_09027_v3' => 'car', 'Ca_09762_v3' => 'car', 'Ca_19444_v3' => 'car', 'Ca_25954_v3' => 'car', 'Cc01_g08790' => 'ccan', 'Cc01_g19610' => 'ccan', 'Cc06_g06220' => 'ccan', 'CDE02G1508' => 'cde', 'CDE04G2896' => 'cde', 'CDE08G1152' => 'cde', 'Cfa006127' => 'cfa', 'Cfa009984' => 'cfa', 'Cfa011889' => 'cfa', 'Cfa016651' => 'cfa', 'Ciclev10010153m.g' => 'ccl', 'Ciclev10010559m.g' => 'ccl', 'Ciclev10012029m.g' => 'ccl', 'Ciclev10012130m.g' => 'ccl', 'Ciclev10012142m.g' => 'ccl', 'Ciclev10013482m.g' => 'ccl', 'Ciclev10013808m.g' => 'ccl', 'Ciclev10023799m.g' => 'ccl', 'Ciclev10028740m.g' => 'ccl', 'Ciclev10028746m.g' => 'ccl', 'Ciclev10028749m.g' => 'ccl', 'Ciclev10029080m.g' => 'ccl', 'CiPaw.07G092700' => 'cil', 'CiPaw.08G104500' => 'cil', 'CiPaw.09G017700' => 'cil', 'CiPaw.10G012700' => 'cil', 'CiPaw.11G108800' => 'cil', 'CiPaw.13G132900' => 'cil', 'CiPaw.14G097700' => 'cil', 'ClCG02G022300' => 'cla', 'ClCG10G018690' => 'cla', 'COL.COLO4_09116' => 'col', 'COL.COLO4_10842' => 'col', 'COL.COLO4_22634' => 'col', 'COL.COLO4_29666' => 'col', 'Cpa.g.c31932.1' => 'cpa', 'Cpa.g.sc195.30' => 'cpa', 'Cpa.g.sc195.31' => 'cpa', 'CsaV3_3G037540' => 'csa', 'CsaV3_6G038430' => 'csa', 'CSS0001600' => 'camsi', 'CSS0018930' => 'camsi', 'CSS0023210' => 'camsi', 'CSS0030350' => 'camsi', 'CSS0031216' => 'camsi', 'DCAR_002742' => 'dca', 'DCAR_006172' => 'dca', 'DCAR_010328' => 'dca', 'DCAR_010330' => 'dca', 'DCAR_010331' => 'dca', 'DCAR_012214' => 'dca', 'DCAR_012216' => 'dca', 'DCAR_012222' => 'dca', 'DCAR_012223' => 'dca', 'DCAR_012224' => 'dca', 'DCAR_012225' => 'dca', 'DCAR_013416' => 'dca', 'DCAR_018416' => 'dca', 'Dinv08922' => 'din', 'Dinv11244' => 'din', 'Dinv21161' => 'din', 'Dinv21162' => 'din', 'Dinv22812' => 'din', 'Dinv31724' => 'din', 'Dinv32946' => 'din', 'Duzib093G0493' => 'dzi', 'Duzib128G0290' => 'dzi', 'Duzib133G1205' => 'dzi', 'Duzib138G0696' => 'dzi', 'Duzib150G0782' => 'dzi', 'Duzib168G1783' => 'dzi', 'Duzib170G0799' => 'dzi', 'ECA236G2531' => 'eca', 'ECA247G2715' => 'eca', 'ECA248G3330' => 'eca', 'EL10Ac3g06407' => 'bvu', 'EL10Ac7g16846' => 'bvu', 'Eucgr.J00526' => 'egr', 'Eucgr.K03377' => 'egr', 'FAN02G0071' => 'fan', 'FAN05G2004' => 'fan', 'FAN05G3885' => 'fan', 'FAN11G0065' => 'fan', 'FAN14G4181' => 'fan', 'FAN15G0462' => 'fan', 'FAN16G3341' => 'fan', 'FAN20G1604' => 'fan', 'FAN21G2749' => 'fan', 'FAN24G2931' => 'fan', 'FAN25G1416' => 'fan', 'FAN27G1515' => 'fan', 'FvH4_2g23740' => 'fve', 'FvH4_3g25740' => 'fve', 'FvH4_6g19530' => 'fve', 'Glyma.02G148100' => 'gma', 'Glyma.03G152300' => 'gma', 'Glyma.03G198600' => 'gma', 'Glyma.10G025700' => 'gma', 'Glyma.10G075800' => 'gma', 'Glyma.11G181200' => 'gma', 'Glyma.12G186800' => 'gma', 'Glyma.13G314700' => 'gma', 'Glyma.14G223800' => 'gma', 'Glyma.19G154800' => 'gma', 'Glyma.19G196400' => 'gma', 'Gohir.A02G095300' => 'ghi', 'Gohir.A04G059700' => 'ghi', 'Gohir.A05G079300' => 'ghi', 'Gohir.A07G111100' => 'ghi', 'Gohir.A11G121900' => 'ghi', 'Gohir.D03G088200' => 'ghi', 'Gohir.D04G096500' => 'ghi', 'Gohir.D05G082200' => 'ghi', 'Gohir.D07G114900' => 'ghi', 'Gohir.D11G127100' => 'ghi', 'Gorai.001G123100' => 'gra', 'Gorai.003G073700' => 'gra', 'Gorai.007G135800' => 'gra', 'Gorai.009G083800' => 'gra', 'Gorai.009G399200' => 'gra', 'GSVIVG01011119001' => 'vvi', 'HanXRQChr01g0018041' => 'han', 'HanXRQChr02g0034551' => 'han', 'HanXRQChr04g0098931' => 'han', 'HanXRQChr04g0118771' => 'han', 'HanXRQChr04g0123241' => 'han', 'HanXRQChr10g0282771' => 'han', 'HanXRQChr15g0485071' => 'han', 'HanXRQChr15g0485081' => 'han', 'Haze_04727' => 'cav', 'Haze_09214' => 'cav', 'Haze_19656' => 'cav', 'Haze_23343' => 'cav', 'Hma1.2p1_0820F.1_g224090' => 'hma', 'HPP92_009882' => 'vpl', 'HPP92_011809' => 'vpl', 'Lalb_Chr01g0017941' => 'lal', 'Lalb_Chr02g0142801' => 'lal', 'Lalb_Chr02g0154771' => 'lal', 'Lalb_Chr03g0028271' => 'lal', 'Lalb_Chr24g0393471' => 'lal', 'Lalb_Chr24g0393481' => 'lal', 'Lj1A258G36' => 'lonja', 'Lj1A46T42' => 'lonja', 'Lj1g0010769' => 'lja', 'Lj1P258T28' => 'lonja', 'Lj2A969G69' => 'lonja', 'Lj2C969G11' => 'lonja', 'Lj2C969T12' => 'lonja', 'Lj2C971G3' => 'lonja', 'Lj2C971T4' => 'lonja', 'Lj2P144T15' => 'lonja', 'Lj2P151T26' => 'lonja', 'Lj2P969T21' => 'lonja', 'Lj2P969T43' => 'lonja', 'Lj2P970T14' => 'lonja', 'Lj2P970T27' => 'lonja', 'Lj2P970T38' => 'lonja', 'Lj2P970T53' => 'lonja', 'Lj2P970T55' => 'lonja', 'Lj3g0009564' => 'lja', 'Lj3g0017769' => 'lja', 'Lj3g0024723' => 'lja', 'Lj5g0015050' => 'lja', 'Lj5g0021329' => 'lja', 'Lj6P612T10' => 'lonja', 'Lsat_1_v5_gn_1_59920' => 'lsa', 'Lsat_1_v5_gn_1_85820' => 'lsa', 'Lsat_1_v5_gn_1_86140' => 'lsa', 'Lsat_1_v5_gn_1_86180' => 'lsa', 'Lsat_1_v5_gn_1_86240' => 'lsa', 'Lsat_1_v5_gn_3_82201' => 'lsa', 'Lsat_1_v5_gn_6_37100' => 'lsa', 'Lsat_1_v5_gn_8_56220' => 'lsa', 'Lsat_1_v5_gn_9_4061' => 'lsa', 'Lsat_1_v5_gn_9_71981' => 'lsa', 'Lsat_1_v5_gn_9_72200' => 'lsa', 'Lsat_1_v5_gn_9_72220' => 'lsa', 'Lsat_1_v5_gn_9_72840' => 'lsa', 'Lsat_1_v5_gn_9_73000' => 'lsa', 'Lsat_1_v5_gn_9_81961' => 'lsa', 'Manes.01G000434' => 'mes', 'Manes.01G208700' => 'mes', 'Manes.09G051600' => 'mes', 'Manes.11G164500' => 'mes', 'Mapoly0027s0014' => 'mpo', 'MBI01_g41238_MAGBIO' => 'mbi', 'MBI01_g44955_MAGBIO' => 'mbi', 'MBI04_g19008_MAGBIO' => 'mbi', 'MBI17_g40298_MAGBIO' => 'mbi', 'MD03G1150200' => 'mdo', 'MD03G1150400' => 'mdo', 'MD03G1267000' => 'mdo', 'MD11G1169600' => 'mdo', 'MD11G1169800' => 'mdo', 'MD11G1287400' => 'mdo', 'MD12G1031600' => 'mdo', 'MD14G1031900' => 'mdo', 'Medtr1g058490' => 'mtr', 'Medtr1g060460' => 'mtr', 'Medtr1g072360' => 'mtr', 'Medtr2g086920' => 'mtr', 'Medtr3g466280' => 'mtr', 'Medtr3g466300' => 'mtr', 'Medtr3g466330' => 'mtr', 'Medtr3g466350' => 'mtr', 'Medtr4g052460' => 'mtr', 'Medtr5g013660' => 'mtr', 'Medtr7g105320' => 'mtr', 'Medtr8g021080' => 'mtr', 'Medtr8g021090' => 'mtr', 'Medtr8g022730' => 'mtr', 'MELO3C009497.2' => 'cme', 'MELO3C014507.2' => 'cme', 'Migut.D02365' => 'egut', 'Migut.J00998' => 'egut', 'Migut.L01805' => 'egut', 'Migut.N02471' => 'egut', 'MSTRG.17698' => 'ama', 'MSTRG.18773' => 'ama', 'MSTRG.19279' => 'ama', 'MSTRG.21567' => 'ama', 'MSTRG.5867' => 'ama', 'Nitab4.5_0000731g0010' => 'nta', 'Nitab4.5_0001028g0070' => 'nta', 'Nitab4.5_0001933g0130' => 'nta', 'Nitab4.5_0002036g0040' => 'nta', 'Nitab4.5_0008177g0020' => 'nta', 'Nn1g02184' => 'nnu', 'Nn2g14229' => 'nnu', 'Nn6g34804' => 'nnu', 'Oeu015964.1' => 'oeu', 'Oeu022879.1' => 'oeu', 'Oeu047417.1' => 'oeu', 'Oeu047834.1' => 'oeu', 'Oeu051601.1' => 'oeu', 'Oeu058570.1' => 'oeu', 'Os01g0685300' => 'osa', 'Os02g0535901' => 'osa', 'Os04g0414500' => 'osa', 'Os11g0155100' => 'osa', 'Os12g0156500' => 'osa', 'Peaxi162Scf00013g00132' => 'pax', 'Peaxi162Scf00069g00003' => 'pax', 'Peaxi162Scf00096g00826' => 'pax', 'Peaxi162Scf00224g00034' => 'pax', 'Peaxi162Scf00338g00064' => 'pax', 'Peaxi162Scf00345g01028' => 'pax', 'PGR031G2343' => 'pgr', 'PGR044G0094' => 'pgr', 'PGR044G1888' => 'pgr', 'PGR102G1477' => 'pgr', 'PGR119G1239' => 'pgr', 'PGR142G3875' => 'pgr', 'PGSC0003DMG400026346' => 'stu', 'PGSC0003DMG400028160' => 'stu', 'Phvul.001G149900' => 'pvu', 'Phvul.001G192900' => 'pvu', 'Phvul.005G121900' => 'pvu', 'Phvul.007G171100' => 'pvu', 'Phvul.011G096300' => 'pvu', 'Potri.001G452000' => 'ptr', 'Potri.002G054500' => 'ptr', 'Potri.004G199300' => 'ptr', 'Potri.005G208200' => 'ptr', 'Potri.006G208400' => 'ptr', 'Potri.009G160700' => 'ptr', 'Pp3c20_18520' => 'ppa', 'Pp3c23_16130' => 'ppa', 'Pp3c23_3650' => 'ppa', 'Prupe.6G137300' => 'ppe', 'Prupe.7G100900' => 'ppe', 'Prupe.8G242700' => 'ppe', 'Psat3g031200' => 'psa', 'Psat5g260120' => 'psa', 'Psat6g060560' => 'psa', 'Psat7g186440' => 'psa', 'PSO170G3673' => 'pso', 'PSO302G0139' => 'pso', 'PSO339G4685' => 'pso', 'PSO339G5488' => 'pso', 'PSO384G0232' => 'pso', 'PSO801G0103' => 'pso', 'QL01p011805' => 'qlo', 'QL02p027135' => 'qlo', 'QL07p038097' => 'qlo', 'QL08p000221' => 'qlo', 'QL08p000251' => 'qlo', 'QL12p022121' => 'qlo', 'RcHm_v2.0_Chr3g0474871' => 'rch', 'RcHm_v2.0_Chr5g0046101' => 'rch', 'RcHm_v2.0_Chr6g0291231' => 'rch', 'Rhsim01G0203100' => 'rsi', 'Rhsim01G0203200' => 'rsi', 'Rhsim01G0203300' => 'rsi', 'Rhsim01G0203600' => 'rsi', 'Rhsim01G0275400' => 'rsi', 'Rhsim03G0069700' => 'rsi', 'Rhsim13G0195000' => 'rsi', 'Sabra02G0044300' => 'sbr', 'Sabra04G0134400' => 'sbr', 'Sabra05G0158400' => 'sbr', 'Sabra06G0160300' => 'sbr', 'Sabra09G0125700' => 'sbr', 'Sabra16G0305200' => 'sbr', 'SalBow3G2393' => 'sbo', 'SalBow3G4144' => 'sbo', 'SalBow4G1376' => 'sbo', 'SalBow5G5688' => 'sbo', 'SalBow6G5902' => 'sbo', 'Sc02g0000450' => 'sci', 'Sc19g0004440' => 'sci', 'Sed0025213' => 'sed', 'Sed0027957' => 'sed', 'SEGI_09392' => 'sgi', 'SEGI_11383' => 'sgi', 'SEGI_16106' => 'sgi', 'SEGI_17994' => 'sgi', 'SEGI_21889' => 'sgi', 'SEGI_26855' => 'sgi', 'SEGI_27650' => 'sgi', 'SEGI_31567' => 'sgi', 'SEGI_31875' => 'sgi', 'SEGI_32242' => 'sgi', 'SEGI_32330' => 'sgi', 'SEGI_33640' => 'sgi', 'SEGI_40647' => 'sgi', 'SEGI_41552' => 'sgi', 'SGA_v2.0_scaffold13G06693' => 'sas', 'SGA_v2.0_scaffold177G39440' => 'sas', 'SGA_v2.0_scaffold36G14254' => 'sas', 'SGA_v2.0_scaffold7G03997' => 'sas', 'SMO358G0574' => 'smo', 'Solyc09g065020.4' => 'sly', 'Solyc10g083230.1' => 'sly', 'Solyc11g068710.3' => 'sly', 'Sopen09g026750' => 'spe', 'Sopen10g032710' => 'spe', 'Sopen11g027420' => 'spe', 'Sp4g10120' => 'spa', 'Sp4g18320' => 'spa', 'Sp5g16910' => 'spa', 'TAR362G0290' => 'tar', 'TAR623G1074' => 'tar', 'TAR633G1115' => 'tar', 'TAR633G1388' => 'tar', 'TAR636G0436' => 'tar', 'TAR636G1412' => 'tar', 'THA.LOC104799555' => 'tha', 'THA.LOC104800515' => 'tha', 'THA.LOC104817554' => 'tha', 'THA.LOC104820728' => 'tha', 'THA.LOC104826437' => 'tha', 'Thecc.01G281400' => 'tca', 'Thecc.03G216100' => 'tca', 'Thecc.05G096200' => 'tca', 'Thecc.09G278000' => 'tca', 'Thecc.09G278100' => 'tca', 'Thhalv10002035m.g' => 'esa', 'Thhalv10016952m.g' => 'esa', 'TPR.G11608' => 'tpr', 'TPR.G15178' => 'tpr', 'TPR.G1585' => 'tpr', 'TPR.G16659' => 'tpr', 'TPR.G16662' => 'tpr', 'TPR.G16673' => 'tpr', 'TPR.G17223' => 'tpr', 'TPR.G23325' => 'tpr', 'TPR.G27006' => 'tpr', 'TPR.G32758' => 'tpr', 'TPR.G36506' => 'tpr', 'TPR.G39610' => 'tpr', 'TPR.G4529' => 'tpr', 'TWI09G0769' => 'twi', 'TWI23G1064' => 'twi', 'TWI39G0306' => 'twi', 'TWI39G0321' => 'twi', 'TWI39G0995' => 'twi', 'TWI53G0879' => 'twi', 'TWI63G0398' => 'twi', 'TWI79G0358' => 'twi', 'TWI79G1506' => 'twi', 'unitig_26.g10153' => 'ugi', 'unitig_26.g9258' => 'ugi', 'unitig_749.g13742' => 'ugi', 'unitig_8.g3660' => 'ugi', 'unitig_899.g15375' => 'ugi', 'VMungo0720G2940' => 'vmu', 'VMungo1080G0702' => 'vmu', 'VMungo1127G0911' => 'vmu', 'VMungo1383G0438' => 'vmu', 'VMungo1383G1863' => 'vmu', 'Zm00001eb017340' => 'zma', 'Zm00001eb083710' => 'zma', 'Zm00001eb197220' => 'zma', 'Zm00001eb197260' => 'zma', 'Zm00001eb242900' => 'zma', 'Zm00001eb421990' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001305', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001305' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001305', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '481', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001305' ) ), 'genes' => array( 'A03p26680' => 'bna', 'A04p20880' => 'bna', 'A04p27630' => 'bna', 'A05p09720' => 'bna', 'Aa31LG4G13820' => 'aar', 'Aa31LG5G21230' => 'aar', 'Aa31LG5G8720' => 'aar', 'Actinidia05398' => 'ach', 'Actinidia07262' => 'ach', 'Actinidia22229' => 'ach', 'Actinidia24232' => 'ach', 'Actinidia24883' => 'ach', 'Actinidia35473' => 'ach', 'Actinidia37071' => 'ach', 'Ah.08g210360' => 'amhyb', 'AL4G21260' => 'aly', 'AL4G32180' => 'aly', 'AL5G22470' => 'aly', 'Aqoxy2G01050' => 'aox', 'Aqoxy2G03288' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45DTJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RJM5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCEI7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9YQVF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D86BWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1GWNH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP0AEQ' => 'arhy', 'AT2G27310' => 'ath', 'AT2G36090' => 'ath', 'AT3G44326' => 'ath', 'ATR0081G028' => 'atr', 'ATR0579G049' => 'atr', 'ATR0626G411' => 'atr', 'Atru.chr3.3162' => 'acertr', 'Atru.chr3.3165' => 'acertr', 'Atru.chr5.1400' => 'acertr', 'Atru.chr5.2517' => 'acertr', 'Atru.chr8.1438' => 'acertr', 'Atru.chr9.1836' => 'acertr', 'AUR62006243' => 'cqu', 'AUR62028481' => 'cqu', 'AUR62038061' => 'cqu', 'AUR62038187' => 'cqu', 'BcaB01g03064' => 'bca', 'BcaB02g09385' => 'bca', 'BcaB06g28141' => 'bca', 'BcaB06g28914' => 'bca', 'BcaC01g04933' => 'bca', 'BcaC02g07632' => 'bca', 'BcaC02g08249' => 'bca', 'BcaC02g08250' => 'bca', 'BcaC02g08252' => 'bca', 'BcaC02g11710' => 'bca', 'BNapus_Darmor_BZH_scaffold_239p00140' => 'bna', 'BolC3t15538H' => 'bol', 'BolC4t22851H' => 'bol', 'BolC4t27201H' => 'bol', 'BolC4t27993H' => 'bol', 'BraA03t11879Z' => 'bra', 'BraA04t17659Z' => 'bra', 'BraA04t18258Z' => 'bra', 'BraA05t19928Z' => 'bra', 'C03p31960' => 'bna', 'C04p12100' => 'bna', 'C04p56690' => 'bna', 'C04p65140' => 'bna', 'CAN.G242.18' => 'can', 'CAN.G745.20' => 'can', 'CAN.G841.16' => 'can', 'CANSAT25G2734' => 'cansat', 'CANSAT54G0611' => 'cansat', 'CANSAT64G2696' => 'cansat', 'CARHR104560' => 'chi', 'CARHR119880' => 'chi', 'CARHR130340' => 'chi', 'Carub.0004s0794' => 'cru', 'Carub.0004s1783' => 'cru', 'Carub.0005s1004' => 'cru', 'Ca_01646_v3' => 'car', 'Ca_09027_v3' => 'car', 'Ca_09762_v3' => 'car', 'Ca_19444_v3' => 'car', 'Ca_25954_v3' => 'car', 'Cc01_g08790' => 'ccan', 'Cc01_g19610' => 'ccan', 'Cc06_g06220' => 'ccan', 'CDE02G1508' => 'cde', 'CDE04G2896' => 'cde', 'CDE08G1152' => 'cde', 'Cfa006127' => 'cfa', 'Cfa009984' => 'cfa', 'Cfa011889' => 'cfa', 'Cfa016651' => 'cfa', 'Ciclev10010153m.g' => 'ccl', 'Ciclev10010559m.g' => 'ccl', 'Ciclev10012029m.g' => 'ccl', 'Ciclev10012130m.g' => 'ccl', 'Ciclev10012142m.g' => 'ccl', 'Ciclev10013482m.g' => 'ccl', 'Ciclev10013808m.g' => 'ccl', 'Ciclev10023799m.g' => 'ccl', 'Ciclev10028740m.g' => 'ccl', 'Ciclev10028746m.g' => 'ccl', 'Ciclev10028749m.g' => 'ccl', 'Ciclev10029080m.g' => 'ccl', 'CiPaw.07G092700' => 'cil', 'CiPaw.08G104500' => 'cil', 'CiPaw.09G017700' => 'cil', 'CiPaw.10G012700' => 'cil', 'CiPaw.11G108800' => 'cil', 'CiPaw.13G132900' => 'cil', 'CiPaw.14G097700' => 'cil', 'ClCG02G022300' => 'cla', 'ClCG10G018690' => 'cla', 'COL.COLO4_09116' => 'col', 'COL.COLO4_10842' => 'col', 'COL.COLO4_22634' => 'col', 'COL.COLO4_29666' => 'col', 'Cpa.g.c31932.1' => 'cpa', 'Cpa.g.sc195.30' => 'cpa', 'Cpa.g.sc195.31' => 'cpa', 'CsaV3_3G037540' => 'csa', 'CsaV3_6G038430' => 'csa', 'CSS0001600' => 'camsi', 'CSS0018930' => 'camsi', 'CSS0023210' => 'camsi', 'CSS0030350' => 'camsi', 'CSS0031216' => 'camsi', 'DCAR_002742' => 'dca', 'DCAR_006172' => 'dca', 'DCAR_010328' => 'dca', 'DCAR_010330' => 'dca', 'DCAR_010331' => 'dca', 'DCAR_012214' => 'dca', 'DCAR_012216' => 'dca', 'DCAR_012222' => 'dca', 'DCAR_012223' => 'dca', 'DCAR_012224' => 'dca', 'DCAR_012225' => 'dca', 'DCAR_013416' => 'dca', 'DCAR_018416' => 'dca', 'Dinv08922' => 'din', 'Dinv11244' => 'din', 'Dinv21161' => 'din', 'Dinv21162' => 'din', 'Dinv22812' => 'din', 'Dinv31724' => 'din', 'Dinv32946' => 'din', 'Duzib093G0493' => 'dzi', 'Duzib128G0290' => 'dzi', 'Duzib133G1205' => 'dzi', 'Duzib138G0696' => 'dzi', 'Duzib150G0782' => 'dzi', 'Duzib168G1783' => 'dzi', 'Duzib170G0799' => 'dzi', 'ECA236G2531' => 'eca', 'ECA247G2715' => 'eca', 'ECA248G3330' => 'eca', 'EL10Ac3g06407' => 'bvu', 'EL10Ac7g16846' => 'bvu', 'Eucgr.J00526' => 'egr', 'Eucgr.K03377' => 'egr', 'FAN02G0071' => 'fan', 'FAN05G2004' => 'fan', 'FAN05G3885' => 'fan', 'FAN11G0065' => 'fan', 'FAN14G4181' => 'fan', 'FAN15G0462' => 'fan', 'FAN16G3341' => 'fan', 'FAN20G1604' => 'fan', 'FAN21G2749' => 'fan', 'FAN24G2931' => 'fan', 'FAN25G1416' => 'fan', 'FAN27G1515' => 'fan', 'FvH4_2g23740' => 'fve', 'FvH4_3g25740' => 'fve', 'FvH4_6g19530' => 'fve', 'Glyma.02G148100' => 'gma', 'Glyma.03G152300' => 'gma', 'Glyma.03G198600' => 'gma', 'Glyma.10G025700' => 'gma', 'Glyma.10G075800' => 'gma', 'Glyma.11G181200' => 'gma', 'Glyma.12G186800' => 'gma', 'Glyma.13G314700' => 'gma', 'Glyma.14G223800' => 'gma', 'Glyma.19G154800' => 'gma', 'Glyma.19G196400' => 'gma', 'Gohir.A02G095300' => 'ghi', 'Gohir.A04G059700' => 'ghi', 'Gohir.A05G079300' => 'ghi', 'Gohir.A07G111100' => 'ghi', 'Gohir.A11G121900' => 'ghi', 'Gohir.D03G088200' => 'ghi', 'Gohir.D04G096500' => 'ghi', 'Gohir.D05G082200' => 'ghi', 'Gohir.D07G114900' => 'ghi', 'Gohir.D11G127100' => 'ghi', 'Gorai.001G123100' => 'gra', 'Gorai.003G073700' => 'gra', 'Gorai.007G135800' => 'gra', 'Gorai.009G083800' => 'gra', 'Gorai.009G399200' => 'gra', 'GSVIVG01011119001' => 'vvi', 'HanXRQChr01g0018041' => 'han', 'HanXRQChr02g0034551' => 'han', 'HanXRQChr04g0098931' => 'han', 'HanXRQChr04g0118771' => 'han', 'HanXRQChr04g0123241' => 'han', 'HanXRQChr10g0282771' => 'han', 'HanXRQChr15g0485071' => 'han', 'HanXRQChr15g0485081' => 'han', 'Haze_04727' => 'cav', 'Haze_09214' => 'cav', 'Haze_19656' => 'cav', 'Haze_23343' => 'cav', 'Hma1.2p1_0820F.1_g224090' => 'hma', 'HPP92_009882' => 'vpl', 'HPP92_011809' => 'vpl', 'Lalb_Chr01g0017941' => 'lal', 'Lalb_Chr02g0142801' => 'lal', 'Lalb_Chr02g0154771' => 'lal', 'Lalb_Chr03g0028271' => 'lal', 'Lalb_Chr24g0393471' => 'lal', 'Lalb_Chr24g0393481' => 'lal', 'Lj1A258G36' => 'lonja', 'Lj1A46T42' => 'lonja', 'Lj1g0010769' => 'lja', 'Lj1P258T28' => 'lonja', 'Lj2A969G69' => 'lonja', 'Lj2C969G11' => 'lonja', 'Lj2C969T12' => 'lonja', 'Lj2C971G3' => 'lonja', 'Lj2C971T4' => 'lonja', 'Lj2P144T15' => 'lonja', 'Lj2P151T26' => 'lonja', 'Lj2P969T21' => 'lonja', 'Lj2P969T43' => 'lonja', 'Lj2P970T14' => 'lonja', 'Lj2P970T27' => 'lonja', 'Lj2P970T38' => 'lonja', 'Lj2P970T53' => 'lonja', 'Lj2P970T55' => 'lonja', 'Lj3g0009564' => 'lja', 'Lj3g0017769' => 'lja', 'Lj3g0024723' => 'lja', 'Lj5g0015050' => 'lja', 'Lj5g0021329' => 'lja', 'Lj6P612T10' => 'lonja', 'Lsat_1_v5_gn_1_59920' => 'lsa', 'Lsat_1_v5_gn_1_85820' => 'lsa', 'Lsat_1_v5_gn_1_86140' => 'lsa', 'Lsat_1_v5_gn_1_86180' => 'lsa', 'Lsat_1_v5_gn_1_86240' => 'lsa', 'Lsat_1_v5_gn_3_82201' => 'lsa', 'Lsat_1_v5_gn_6_37100' => 'lsa', 'Lsat_1_v5_gn_8_56220' => 'lsa', 'Lsat_1_v5_gn_9_4061' => 'lsa', 'Lsat_1_v5_gn_9_71981' => 'lsa', 'Lsat_1_v5_gn_9_72200' => 'lsa', 'Lsat_1_v5_gn_9_72220' => 'lsa', 'Lsat_1_v5_gn_9_72840' => 'lsa', 'Lsat_1_v5_gn_9_73000' => 'lsa', 'Lsat_1_v5_gn_9_81961' => 'lsa', 'Manes.01G000434' => 'mes', 'Manes.01G208700' => 'mes', 'Manes.09G051600' => 'mes', 'Manes.11G164500' => 'mes', 'Mapoly0027s0014' => 'mpo', 'MBI01_g41238_MAGBIO' => 'mbi', 'MBI01_g44955_MAGBIO' => 'mbi', 'MBI04_g19008_MAGBIO' => 'mbi', 'MBI17_g40298_MAGBIO' => 'mbi', 'MD03G1150200' => 'mdo', 'MD03G1150400' => 'mdo', 'MD03G1267000' => 'mdo', 'MD11G1169600' => 'mdo', 'MD11G1169800' => 'mdo', 'MD11G1287400' => 'mdo', 'MD12G1031600' => 'mdo', 'MD14G1031900' => 'mdo', 'Medtr1g058490' => 'mtr', 'Medtr1g060460' => 'mtr', 'Medtr1g072360' => 'mtr', 'Medtr2g086920' => 'mtr', 'Medtr3g466280' => 'mtr', 'Medtr3g466300' => 'mtr', 'Medtr3g466330' => 'mtr', 'Medtr3g466350' => 'mtr', 'Medtr4g052460' => 'mtr', 'Medtr5g013660' => 'mtr', 'Medtr7g105320' => 'mtr', 'Medtr8g021080' => 'mtr', 'Medtr8g021090' => 'mtr', 'Medtr8g022730' => 'mtr', 'MELO3C009497.2' => 'cme', 'MELO3C014507.2' => 'cme', 'Migut.D02365' => 'egut', 'Migut.J00998' => 'egut', 'Migut.L01805' => 'egut', 'Migut.N02471' => 'egut', 'MSTRG.17698' => 'ama', 'MSTRG.18773' => 'ama', 'MSTRG.19279' => 'ama', 'MSTRG.21567' => 'ama', 'MSTRG.5867' => 'ama', 'Nitab4.5_0000731g0010' => 'nta', 'Nitab4.5_0001028g0070' => 'nta', 'Nitab4.5_0001933g0130' => 'nta', 'Nitab4.5_0002036g0040' => 'nta', 'Nitab4.5_0008177g0020' => 'nta', 'Nn1g02184' => 'nnu', 'Nn2g14229' => 'nnu', 'Nn6g34804' => 'nnu', 'Oeu015964.1' => 'oeu', 'Oeu022879.1' => 'oeu', 'Oeu047417.1' => 'oeu', 'Oeu047834.1' => 'oeu', 'Oeu051601.1' => 'oeu', 'Oeu058570.1' => 'oeu', 'Os01g0685300' => 'osa', 'Os02g0535901' => 'osa', 'Os04g0414500' => 'osa', 'Os11g0155100' => 'osa', 'Os12g0156500' => 'osa', 'Peaxi162Scf00013g00132' => 'pax', 'Peaxi162Scf00069g00003' => 'pax', 'Peaxi162Scf00096g00826' => 'pax', 'Peaxi162Scf00224g00034' => 'pax', 'Peaxi162Scf00338g00064' => 'pax', 'Peaxi162Scf00345g01028' => 'pax', 'PGR031G2343' => 'pgr', 'PGR044G0094' => 'pgr', 'PGR044G1888' => 'pgr', 'PGR102G1477' => 'pgr', 'PGR119G1239' => 'pgr', 'PGR142G3875' => 'pgr', 'PGSC0003DMG400026346' => 'stu', 'PGSC0003DMG400028160' => 'stu', 'Phvul.001G149900' => 'pvu', 'Phvul.001G192900' => 'pvu', 'Phvul.005G121900' => 'pvu', 'Phvul.007G171100' => 'pvu', 'Phvul.011G096300' => 'pvu', 'Potri.001G452000' => 'ptr', 'Potri.002G054500' => 'ptr', 'Potri.004G199300' => 'ptr', 'Potri.005G208200' => 'ptr', 'Potri.006G208400' => 'ptr', 'Potri.009G160700' => 'ptr', 'Pp3c20_18520' => 'ppa', 'Pp3c23_16130' => 'ppa', 'Pp3c23_3650' => 'ppa', 'Prupe.6G137300' => 'ppe', 'Prupe.7G100900' => 'ppe', 'Prupe.8G242700' => 'ppe', 'Psat3g031200' => 'psa', 'Psat5g260120' => 'psa', 'Psat6g060560' => 'psa', 'Psat7g186440' => 'psa', 'PSO170G3673' => 'pso', 'PSO302G0139' => 'pso', 'PSO339G4685' => 'pso', 'PSO339G5488' => 'pso', 'PSO384G0232' => 'pso', 'PSO801G0103' => 'pso', 'QL01p011805' => 'qlo', 'QL02p027135' => 'qlo', 'QL07p038097' => 'qlo', 'QL08p000221' => 'qlo', 'QL08p000251' => 'qlo', 'QL12p022121' => 'qlo', 'RcHm_v2.0_Chr3g0474871' => 'rch', 'RcHm_v2.0_Chr5g0046101' => 'rch', 'RcHm_v2.0_Chr6g0291231' => 'rch', 'Rhsim01G0203100' => 'rsi', 'Rhsim01G0203200' => 'rsi', 'Rhsim01G0203300' => 'rsi', 'Rhsim01G0203600' => 'rsi', 'Rhsim01G0275400' => 'rsi', 'Rhsim03G0069700' => 'rsi', 'Rhsim13G0195000' => 'rsi', 'Sabra02G0044300' => 'sbr', 'Sabra04G0134400' => 'sbr', 'Sabra05G0158400' => 'sbr', 'Sabra06G0160300' => 'sbr', 'Sabra09G0125700' => 'sbr', 'Sabra16G0305200' => 'sbr', 'SalBow3G2393' => 'sbo', 'SalBow3G4144' => 'sbo', 'SalBow4G1376' => 'sbo', 'SalBow5G5688' => 'sbo', 'SalBow6G5902' => 'sbo', 'Sc02g0000450' => 'sci', 'Sc19g0004440' => 'sci', 'Sed0025213' => 'sed', 'Sed0027957' => 'sed', 'SEGI_09392' => 'sgi', 'SEGI_11383' => 'sgi', 'SEGI_16106' => 'sgi', 'SEGI_17994' => 'sgi', 'SEGI_21889' => 'sgi', 'SEGI_26855' => 'sgi', 'SEGI_27650' => 'sgi', 'SEGI_31567' => 'sgi', 'SEGI_31875' => 'sgi', 'SEGI_32242' => 'sgi', 'SEGI_32330' => 'sgi', 'SEGI_33640' => 'sgi', 'SEGI_40647' => 'sgi', 'SEGI_41552' => 'sgi', 'SGA_v2.0_scaffold13G06693' => 'sas', 'SGA_v2.0_scaffold177G39440' => 'sas', 'SGA_v2.0_scaffold36G14254' => 'sas', 'SGA_v2.0_scaffold7G03997' => 'sas', 'SMO358G0574' => 'smo', 'Solyc09g065020.4' => 'sly', 'Solyc10g083230.1' => 'sly', 'Solyc11g068710.3' => 'sly', 'Sopen09g026750' => 'spe', 'Sopen10g032710' => 'spe', 'Sopen11g027420' => 'spe', 'Sp4g10120' => 'spa', 'Sp4g18320' => 'spa', 'Sp5g16910' => 'spa', 'TAR362G0290' => 'tar', 'TAR623G1074' => 'tar', 'TAR633G1115' => 'tar', 'TAR633G1388' => 'tar', 'TAR636G0436' => 'tar', 'TAR636G1412' => 'tar', 'THA.LOC104799555' => 'tha', 'THA.LOC104800515' => 'tha', 'THA.LOC104817554' => 'tha', 'THA.LOC104820728' => 'tha', 'THA.LOC104826437' => 'tha', 'Thecc.01G281400' => 'tca', 'Thecc.03G216100' => 'tca', 'Thecc.05G096200' => 'tca', 'Thecc.09G278000' => 'tca', 'Thecc.09G278100' => 'tca', 'Thhalv10002035m.g' => 'esa', 'Thhalv10016952m.g' => 'esa', 'TPR.G11608' => 'tpr', 'TPR.G15178' => 'tpr', 'TPR.G1585' => 'tpr', 'TPR.G16659' => 'tpr', 'TPR.G16662' => 'tpr', 'TPR.G16673' => 'tpr', 'TPR.G17223' => 'tpr', 'TPR.G23325' => 'tpr', 'TPR.G27006' => 'tpr', 'TPR.G32758' => 'tpr', 'TPR.G36506' => 'tpr', 'TPR.G39610' => 'tpr', 'TPR.G4529' => 'tpr', 'TWI09G0769' => 'twi', 'TWI23G1064' => 'twi', 'TWI39G0306' => 'twi', 'TWI39G0321' => 'twi', 'TWI39G0995' => 'twi', 'TWI53G0879' => 'twi', 'TWI63G0398' => 'twi', 'TWI79G0358' => 'twi', 'TWI79G1506' => 'twi', 'unitig_26.g10153' => 'ugi', 'unitig_26.g9258' => 'ugi', 'unitig_749.g13742' => 'ugi', 'unitig_8.g3660' => 'ugi', 'unitig_899.g15375' => 'ugi', 'VMungo0720G2940' => 'vmu', 'VMungo1080G0702' => 'vmu', 'VMungo1127G0911' => 'vmu', 'VMungo1383G0438' => 'vmu', 'VMungo1383G1863' => 'vmu', 'Zm00001eb017340' => 'zma', 'Zm00001eb083710' => 'zma', 'Zm00001eb197220' => 'zma', 'Zm00001eb197260' => 'zma', 'Zm00001eb242900' => 'zma', 'Zm00001eb421990' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001305' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001305' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001305' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001305' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001305', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '481', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p26680' => 'bna', 'A04p20880' => 'bna', 'A04p27630' => 'bna', 'A05p09720' => 'bna', 'Aa31LG4G13820' => 'aar', 'Aa31LG5G21230' => 'aar', 'Aa31LG5G8720' => 'aar', 'Actinidia05398' => 'ach', 'Actinidia07262' => 'ach', 'Actinidia22229' => 'ach', 'Actinidia24232' => 'ach', 'Actinidia24883' => 'ach', 'Actinidia35473' => 'ach', 'Actinidia37071' => 'ach', 'Ah.08g210360' => 'amhyb', 'AL4G21260' => 'aly', 'AL4G32180' => 'aly', 'AL5G22470' => 'aly', 'Aqoxy2G01050' => 'aox', 'Aqoxy2G03288' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45DTJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RJM5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCEI7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9YQVF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D86BWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1GWNH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP0AEQ' => 'arhy', 'AT2G27310' => 'ath', 'AT2G36090' => 'ath', 'AT3G44326' => 'ath', 'ATR0081G028' => 'atr', 'ATR0579G049' => 'atr', 'ATR0626G411' => 'atr', 'Atru.chr3.3162' => 'acertr', 'Atru.chr3.3165' => 'acertr', 'Atru.chr5.1400' => 'acertr', 'Atru.chr5.2517' => 'acertr', 'Atru.chr8.1438' => 'acertr', 'Atru.chr9.1836' => 'acertr', 'AUR62006243' => 'cqu', 'AUR62028481' => 'cqu', 'AUR62038061' => 'cqu', 'AUR62038187' => 'cqu', 'BcaB01g03064' => 'bca', 'BcaB02g09385' => 'bca', 'BcaB06g28141' => 'bca', 'BcaB06g28914' => 'bca', 'BcaC01g04933' => 'bca', 'BcaC02g07632' => 'bca', 'BcaC02g08249' => 'bca', 'BcaC02g08250' => 'bca', 'BcaC02g08252' => 'bca', 'BcaC02g11710' => 'bca', 'BNapus_Darmor_BZH_scaffold_239p00140' => 'bna', 'BolC3t15538H' => 'bol', 'BolC4t22851H' => 'bol', 'BolC4t27201H' => 'bol', 'BolC4t27993H' => 'bol', 'BraA03t11879Z' => 'bra', 'BraA04t17659Z' => 'bra', 'BraA04t18258Z' => 'bra', 'BraA05t19928Z' => 'bra', 'C03p31960' => 'bna', 'C04p12100' => 'bna', 'C04p56690' => 'bna', 'C04p65140' => 'bna', 'CAN.G242.18' => 'can', 'CAN.G745.20' => 'can', 'CAN.G841.16' => 'can', 'CANSAT25G2734' => 'cansat', 'CANSAT54G0611' => 'cansat', 'CANSAT64G2696' => 'cansat', 'CARHR104560' => 'chi', 'CARHR119880' => 'chi', 'CARHR130340' => 'chi', 'Carub.0004s0794' => 'cru', 'Carub.0004s1783' => 'cru', 'Carub.0005s1004' => 'cru', 'Ca_01646_v3' => 'car', 'Ca_09027_v3' => 'car', 'Ca_09762_v3' => 'car', 'Ca_19444_v3' => 'car', 'Ca_25954_v3' => 'car', 'Cc01_g08790' => 'ccan', 'Cc01_g19610' => 'ccan', 'Cc06_g06220' => 'ccan', 'CDE02G1508' => 'cde', 'CDE04G2896' => 'cde', 'CDE08G1152' => 'cde', 'Cfa006127' => 'cfa', 'Cfa009984' => 'cfa', 'Cfa011889' => 'cfa', 'Cfa016651' => 'cfa', 'Ciclev10010153m.g' => 'ccl', 'Ciclev10010559m.g' => 'ccl', 'Ciclev10012029m.g' => 'ccl', 'Ciclev10012130m.g' => 'ccl', 'Ciclev10012142m.g' => 'ccl', 'Ciclev10013482m.g' => 'ccl', 'Ciclev10013808m.g' => 'ccl', 'Ciclev10023799m.g' => 'ccl', 'Ciclev10028740m.g' => 'ccl', 'Ciclev10028746m.g' => 'ccl', 'Ciclev10028749m.g' => 'ccl', 'Ciclev10029080m.g' => 'ccl', 'CiPaw.07G092700' => 'cil', 'CiPaw.08G104500' => 'cil', 'CiPaw.09G017700' => 'cil', 'CiPaw.10G012700' => 'cil', 'CiPaw.11G108800' => 'cil', 'CiPaw.13G132900' => 'cil', 'CiPaw.14G097700' => 'cil', 'ClCG02G022300' => 'cla', 'ClCG10G018690' => 'cla', 'COL.COLO4_09116' => 'col', 'COL.COLO4_10842' => 'col', 'COL.COLO4_22634' => 'col', 'COL.COLO4_29666' => 'col', 'Cpa.g.c31932.1' => 'cpa', 'Cpa.g.sc195.30' => 'cpa', 'Cpa.g.sc195.31' => 'cpa', 'CsaV3_3G037540' => 'csa', 'CsaV3_6G038430' => 'csa', 'CSS0001600' => 'camsi', 'CSS0018930' => 'camsi', 'CSS0023210' => 'camsi', 'CSS0030350' => 'camsi', 'CSS0031216' => 'camsi', 'DCAR_002742' => 'dca', 'DCAR_006172' => 'dca', 'DCAR_010328' => 'dca', 'DCAR_010330' => 'dca', 'DCAR_010331' => 'dca', 'DCAR_012214' => 'dca', 'DCAR_012216' => 'dca', 'DCAR_012222' => 'dca', 'DCAR_012223' => 'dca', 'DCAR_012224' => 'dca', 'DCAR_012225' => 'dca', 'DCAR_013416' => 'dca', 'DCAR_018416' => 'dca', 'Dinv08922' => 'din', 'Dinv11244' => 'din', 'Dinv21161' => 'din', 'Dinv21162' => 'din', 'Dinv22812' => 'din', 'Dinv31724' => 'din', 'Dinv32946' => 'din', 'Duzib093G0493' => 'dzi', 'Duzib128G0290' => 'dzi', 'Duzib133G1205' => 'dzi', 'Duzib138G0696' => 'dzi', 'Duzib150G0782' => 'dzi', 'Duzib168G1783' => 'dzi', 'Duzib170G0799' => 'dzi', 'ECA236G2531' => 'eca', 'ECA247G2715' => 'eca', 'ECA248G3330' => 'eca', 'EL10Ac3g06407' => 'bvu', 'EL10Ac7g16846' => 'bvu', 'Eucgr.J00526' => 'egr', 'Eucgr.K03377' => 'egr', 'FAN02G0071' => 'fan', 'FAN05G2004' => 'fan', 'FAN05G3885' => 'fan', 'FAN11G0065' => 'fan', 'FAN14G4181' => 'fan', 'FAN15G0462' => 'fan', 'FAN16G3341' => 'fan', 'FAN20G1604' => 'fan', 'FAN21G2749' => 'fan', 'FAN24G2931' => 'fan', 'FAN25G1416' => 'fan', 'FAN27G1515' => 'fan', 'FvH4_2g23740' => 'fve', 'FvH4_3g25740' => 'fve', 'FvH4_6g19530' => 'fve', 'Glyma.02G148100' => 'gma', 'Glyma.03G152300' => 'gma', 'Glyma.03G198600' => 'gma', 'Glyma.10G025700' => 'gma', 'Glyma.10G075800' => 'gma', 'Glyma.11G181200' => 'gma', 'Glyma.12G186800' => 'gma', 'Glyma.13G314700' => 'gma', 'Glyma.14G223800' => 'gma', 'Glyma.19G154800' => 'gma', 'Glyma.19G196400' => 'gma', 'Gohir.A02G095300' => 'ghi', 'Gohir.A04G059700' => 'ghi', 'Gohir.A05G079300' => 'ghi', 'Gohir.A07G111100' => 'ghi', 'Gohir.A11G121900' => 'ghi', 'Gohir.D03G088200' => 'ghi', 'Gohir.D04G096500' => 'ghi', 'Gohir.D05G082200' => 'ghi', 'Gohir.D07G114900' => 'ghi', 'Gohir.D11G127100' => 'ghi', 'Gorai.001G123100' => 'gra', 'Gorai.003G073700' => 'gra', 'Gorai.007G135800' => 'gra', 'Gorai.009G083800' => 'gra', 'Gorai.009G399200' => 'gra', 'GSVIVG01011119001' => 'vvi', 'HanXRQChr01g0018041' => 'han', 'HanXRQChr02g0034551' => 'han', 'HanXRQChr04g0098931' => 'han', 'HanXRQChr04g0118771' => 'han', 'HanXRQChr04g0123241' => 'han', 'HanXRQChr10g0282771' => 'han', 'HanXRQChr15g0485071' => 'han', 'HanXRQChr15g0485081' => 'han', 'Haze_04727' => 'cav', 'Haze_09214' => 'cav', 'Haze_19656' => 'cav', 'Haze_23343' => 'cav', 'Hma1.2p1_0820F.1_g224090' => 'hma', 'HPP92_009882' => 'vpl', 'HPP92_011809' => 'vpl', 'Lalb_Chr01g0017941' => 'lal', 'Lalb_Chr02g0142801' => 'lal', 'Lalb_Chr02g0154771' => 'lal', 'Lalb_Chr03g0028271' => 'lal', 'Lalb_Chr24g0393471' => 'lal', 'Lalb_Chr24g0393481' => 'lal', 'Lj1A258G36' => 'lonja', 'Lj1A46T42' => 'lonja', 'Lj1g0010769' => 'lja', 'Lj1P258T28' => 'lonja', 'Lj2A969G69' => 'lonja', 'Lj2C969G11' => 'lonja', 'Lj2C969T12' => 'lonja', 'Lj2C971G3' => 'lonja', 'Lj2C971T4' => 'lonja', 'Lj2P144T15' => 'lonja', 'Lj2P151T26' => 'lonja', 'Lj2P969T21' => 'lonja', 'Lj2P969T43' => 'lonja', 'Lj2P970T14' => 'lonja', 'Lj2P970T27' => 'lonja', 'Lj2P970T38' => 'lonja', 'Lj2P970T53' => 'lonja', 'Lj2P970T55' => 'lonja', 'Lj3g0009564' => 'lja', 'Lj3g0017769' => 'lja', 'Lj3g0024723' => 'lja', 'Lj5g0015050' => 'lja', 'Lj5g0021329' => 'lja', 'Lj6P612T10' => 'lonja', 'Lsat_1_v5_gn_1_59920' => 'lsa', 'Lsat_1_v5_gn_1_85820' => 'lsa', 'Lsat_1_v5_gn_1_86140' => 'lsa', 'Lsat_1_v5_gn_1_86180' => 'lsa', 'Lsat_1_v5_gn_1_86240' => 'lsa', 'Lsat_1_v5_gn_3_82201' => 'lsa', 'Lsat_1_v5_gn_6_37100' => 'lsa', 'Lsat_1_v5_gn_8_56220' => 'lsa', 'Lsat_1_v5_gn_9_4061' => 'lsa', 'Lsat_1_v5_gn_9_71981' => 'lsa', 'Lsat_1_v5_gn_9_72200' => 'lsa', 'Lsat_1_v5_gn_9_72220' => 'lsa', 'Lsat_1_v5_gn_9_72840' => 'lsa', 'Lsat_1_v5_gn_9_73000' => 'lsa', 'Lsat_1_v5_gn_9_81961' => 'lsa', 'Manes.01G000434' => 'mes', 'Manes.01G208700' => 'mes', 'Manes.09G051600' => 'mes', 'Manes.11G164500' => 'mes', 'Mapoly0027s0014' => 'mpo', 'MBI01_g41238_MAGBIO' => 'mbi', 'MBI01_g44955_MAGBIO' => 'mbi', 'MBI04_g19008_MAGBIO' => 'mbi', 'MBI17_g40298_MAGBIO' => 'mbi', 'MD03G1150200' => 'mdo', 'MD03G1150400' => 'mdo', 'MD03G1267000' => 'mdo', 'MD11G1169600' => 'mdo', 'MD11G1169800' => 'mdo', 'MD11G1287400' => 'mdo', 'MD12G1031600' => 'mdo', 'MD14G1031900' => 'mdo', 'Medtr1g058490' => 'mtr', 'Medtr1g060460' => 'mtr', 'Medtr1g072360' => 'mtr', 'Medtr2g086920' => 'mtr', 'Medtr3g466280' => 'mtr', 'Medtr3g466300' => 'mtr', 'Medtr3g466330' => 'mtr', 'Medtr3g466350' => 'mtr', 'Medtr4g052460' => 'mtr', 'Medtr5g013660' => 'mtr', 'Medtr7g105320' => 'mtr', 'Medtr8g021080' => 'mtr', 'Medtr8g021090' => 'mtr', 'Medtr8g022730' => 'mtr', 'MELO3C009497.2' => 'cme', 'MELO3C014507.2' => 'cme', 'Migut.D02365' => 'egut', 'Migut.J00998' => 'egut', 'Migut.L01805' => 'egut', 'Migut.N02471' => 'egut', 'MSTRG.17698' => 'ama', 'MSTRG.18773' => 'ama', 'MSTRG.19279' => 'ama', 'MSTRG.21567' => 'ama', 'MSTRG.5867' => 'ama', 'Nitab4.5_0000731g0010' => 'nta', 'Nitab4.5_0001028g0070' => 'nta', 'Nitab4.5_0001933g0130' => 'nta', 'Nitab4.5_0002036g0040' => 'nta', 'Nitab4.5_0008177g0020' => 'nta', 'Nn1g02184' => 'nnu', 'Nn2g14229' => 'nnu', 'Nn6g34804' => 'nnu', 'Oeu015964.1' => 'oeu', 'Oeu022879.1' => 'oeu', 'Oeu047417.1' => 'oeu', 'Oeu047834.1' => 'oeu', 'Oeu051601.1' => 'oeu', 'Oeu058570.1' => 'oeu', 'Os01g0685300' => 'osa', 'Os02g0535901' => 'osa', 'Os04g0414500' => 'osa', 'Os11g0155100' => 'osa', 'Os12g0156500' => 'osa', 'Peaxi162Scf00013g00132' => 'pax', 'Peaxi162Scf00069g00003' => 'pax', 'Peaxi162Scf00096g00826' => 'pax', 'Peaxi162Scf00224g00034' => 'pax', 'Peaxi162Scf00338g00064' => 'pax', 'Peaxi162Scf00345g01028' => 'pax', 'PGR031G2343' => 'pgr', 'PGR044G0094' => 'pgr', 'PGR044G1888' => 'pgr', 'PGR102G1477' => 'pgr', 'PGR119G1239' => 'pgr', 'PGR142G3875' => 'pgr', 'PGSC0003DMG400026346' => 'stu', 'PGSC0003DMG400028160' => 'stu', 'Phvul.001G149900' => 'pvu', 'Phvul.001G192900' => 'pvu', 'Phvul.005G121900' => 'pvu', 'Phvul.007G171100' => 'pvu', 'Phvul.011G096300' => 'pvu', 'Potri.001G452000' => 'ptr', 'Potri.002G054500' => 'ptr', 'Potri.004G199300' => 'ptr', 'Potri.005G208200' => 'ptr', 'Potri.006G208400' => 'ptr', 'Potri.009G160700' => 'ptr', 'Pp3c20_18520' => 'ppa', 'Pp3c23_16130' => 'ppa', 'Pp3c23_3650' => 'ppa', 'Prupe.6G137300' => 'ppe', 'Prupe.7G100900' => 'ppe', 'Prupe.8G242700' => 'ppe', 'Psat3g031200' => 'psa', 'Psat5g260120' => 'psa', 'Psat6g060560' => 'psa', 'Psat7g186440' => 'psa', 'PSO170G3673' => 'pso', 'PSO302G0139' => 'pso', 'PSO339G4685' => 'pso', 'PSO339G5488' => 'pso', 'PSO384G0232' => 'pso', 'PSO801G0103' => 'pso', 'QL01p011805' => 'qlo', 'QL02p027135' => 'qlo', 'QL07p038097' => 'qlo', 'QL08p000221' => 'qlo', 'QL08p000251' => 'qlo', 'QL12p022121' => 'qlo', 'RcHm_v2.0_Chr3g0474871' => 'rch', 'RcHm_v2.0_Chr5g0046101' => 'rch', 'RcHm_v2.0_Chr6g0291231' => 'rch', 'Rhsim01G0203100' => 'rsi', 'Rhsim01G0203200' => 'rsi', 'Rhsim01G0203300' => 'rsi', 'Rhsim01G0203600' => 'rsi', 'Rhsim01G0275400' => 'rsi', 'Rhsim03G0069700' => 'rsi', 'Rhsim13G0195000' => 'rsi', 'Sabra02G0044300' => 'sbr', 'Sabra04G0134400' => 'sbr', 'Sabra05G0158400' => 'sbr', 'Sabra06G0160300' => 'sbr', 'Sabra09G0125700' => 'sbr', 'Sabra16G0305200' => 'sbr', 'SalBow3G2393' => 'sbo', 'SalBow3G4144' => 'sbo', 'SalBow4G1376' => 'sbo', 'SalBow5G5688' => 'sbo', 'SalBow6G5902' => 'sbo', 'Sc02g0000450' => 'sci', 'Sc19g0004440' => 'sci', 'Sed0025213' => 'sed', 'Sed0027957' => 'sed', 'SEGI_09392' => 'sgi', 'SEGI_11383' => 'sgi', 'SEGI_16106' => 'sgi', 'SEGI_17994' => 'sgi', 'SEGI_21889' => 'sgi', 'SEGI_26855' => 'sgi', 'SEGI_27650' => 'sgi', 'SEGI_31567' => 'sgi', 'SEGI_31875' => 'sgi', 'SEGI_32242' => 'sgi', 'SEGI_32330' => 'sgi', 'SEGI_33640' => 'sgi', 'SEGI_40647' => 'sgi', 'SEGI_41552' => 'sgi', 'SGA_v2.0_scaffold13G06693' => 'sas', 'SGA_v2.0_scaffold177G39440' => 'sas', 'SGA_v2.0_scaffold36G14254' => 'sas', 'SGA_v2.0_scaffold7G03997' => 'sas', 'SMO358G0574' => 'smo', 'Solyc09g065020.4' => 'sly', 'Solyc10g083230.1' => 'sly', 'Solyc11g068710.3' => 'sly', 'Sopen09g026750' => 'spe', 'Sopen10g032710' => 'spe', 'Sopen11g027420' => 'spe', 'Sp4g10120' => 'spa', 'Sp4g18320' => 'spa', 'Sp5g16910' => 'spa', 'TAR362G0290' => 'tar', 'TAR623G1074' => 'tar', 'TAR633G1115' => 'tar', 'TAR633G1388' => 'tar', 'TAR636G0436' => 'tar', 'TAR636G1412' => 'tar', 'THA.LOC104799555' => 'tha', 'THA.LOC104800515' => 'tha', 'THA.LOC104817554' => 'tha', 'THA.LOC104820728' => 'tha', 'THA.LOC104826437' => 'tha', 'Thecc.01G281400' => 'tca', 'Thecc.03G216100' => 'tca', 'Thecc.05G096200' => 'tca', 'Thecc.09G278000' => 'tca', 'Thecc.09G278100' => 'tca', 'Thhalv10002035m.g' => 'esa', 'Thhalv10016952m.g' => 'esa', 'TPR.G11608' => 'tpr', 'TPR.G15178' => 'tpr', 'TPR.G1585' => 'tpr', 'TPR.G16659' => 'tpr', 'TPR.G16662' => 'tpr', 'TPR.G16673' => 'tpr', 'TPR.G17223' => 'tpr', 'TPR.G23325' => 'tpr', 'TPR.G27006' => 'tpr', 'TPR.G32758' => 'tpr', 'TPR.G36506' => 'tpr', 'TPR.G39610' => 'tpr', 'TPR.G4529' => 'tpr', 'TWI09G0769' => 'twi', 'TWI23G1064' => 'twi', 'TWI39G0306' => 'twi', 'TWI39G0321' => 'twi', 'TWI39G0995' => 'twi', 'TWI53G0879' => 'twi', 'TWI63G0398' => 'twi', 'TWI79G0358' => 'twi', 'TWI79G1506' => 'twi', 'unitig_26.g10153' => 'ugi', 'unitig_26.g9258' => 'ugi', 'unitig_749.g13742' => 'ugi', 'unitig_8.g3660' => 'ugi', 'unitig_899.g15375' => 'ugi', 'VMungo0720G2940' => 'vmu', 'VMungo1080G0702' => 'vmu', 'VMungo1127G0911' => 'vmu', 'VMungo1383G0438' => 'vmu', 'VMungo1383G1863' => 'vmu', 'Zm00001eb017340' => 'zma', 'Zm00001eb083710' => 'zma', 'Zm00001eb197220' => 'zma', 'Zm00001eb197260' => 'zma', 'Zm00001eb242900' => 'zma', 'Zm00001eb421990' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001305', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001305' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001305', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '481', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001305' ) ), 'genes' => array( 'A03p26680' => 'bna', 'A04p20880' => 'bna', 'A04p27630' => 'bna', 'A05p09720' => 'bna', 'Aa31LG4G13820' => 'aar', 'Aa31LG5G21230' => 'aar', 'Aa31LG5G8720' => 'aar', 'Actinidia05398' => 'ach', 'Actinidia07262' => 'ach', 'Actinidia22229' => 'ach', 'Actinidia24232' => 'ach', 'Actinidia24883' => 'ach', 'Actinidia35473' => 'ach', 'Actinidia37071' => 'ach', 'Ah.08g210360' => 'amhyb', 'AL4G21260' => 'aly', 'AL4G32180' => 'aly', 'AL5G22470' => 'aly', 'Aqoxy2G01050' => 'aox', 'Aqoxy2G03288' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45DTJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RJM5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCEI7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9YQVF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D86BWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1GWNH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP0AEQ' => 'arhy', 'AT2G27310' => 'ath', 'AT2G36090' => 'ath', 'AT3G44326' => 'ath', 'ATR0081G028' => 'atr', 'ATR0579G049' => 'atr', 'ATR0626G411' => 'atr', 'Atru.chr3.3162' => 'acertr', 'Atru.chr3.3165' => 'acertr', 'Atru.chr5.1400' => 'acertr', 'Atru.chr5.2517' => 'acertr', 'Atru.chr8.1438' => 'acertr', 'Atru.chr9.1836' => 'acertr', 'AUR62006243' => 'cqu', 'AUR62028481' => 'cqu', 'AUR62038061' => 'cqu', 'AUR62038187' => 'cqu', 'BcaB01g03064' => 'bca', 'BcaB02g09385' => 'bca', 'BcaB06g28141' => 'bca', 'BcaB06g28914' => 'bca', 'BcaC01g04933' => 'bca', 'BcaC02g07632' => 'bca', 'BcaC02g08249' => 'bca', 'BcaC02g08250' => 'bca', 'BcaC02g08252' => 'bca', 'BcaC02g11710' => 'bca', 'BNapus_Darmor_BZH_scaffold_239p00140' => 'bna', 'BolC3t15538H' => 'bol', 'BolC4t22851H' => 'bol', 'BolC4t27201H' => 'bol', 'BolC4t27993H' => 'bol', 'BraA03t11879Z' => 'bra', 'BraA04t17659Z' => 'bra', 'BraA04t18258Z' => 'bra', 'BraA05t19928Z' => 'bra', 'C03p31960' => 'bna', 'C04p12100' => 'bna', 'C04p56690' => 'bna', 'C04p65140' => 'bna', 'CAN.G242.18' => 'can', 'CAN.G745.20' => 'can', 'CAN.G841.16' => 'can', 'CANSAT25G2734' => 'cansat', 'CANSAT54G0611' => 'cansat', 'CANSAT64G2696' => 'cansat', 'CARHR104560' => 'chi', 'CARHR119880' => 'chi', 'CARHR130340' => 'chi', 'Carub.0004s0794' => 'cru', 'Carub.0004s1783' => 'cru', 'Carub.0005s1004' => 'cru', 'Ca_01646_v3' => 'car', 'Ca_09027_v3' => 'car', 'Ca_09762_v3' => 'car', 'Ca_19444_v3' => 'car', 'Ca_25954_v3' => 'car', 'Cc01_g08790' => 'ccan', 'Cc01_g19610' => 'ccan', 'Cc06_g06220' => 'ccan', 'CDE02G1508' => 'cde', 'CDE04G2896' => 'cde', 'CDE08G1152' => 'cde', 'Cfa006127' => 'cfa', 'Cfa009984' => 'cfa', 'Cfa011889' => 'cfa', 'Cfa016651' => 'cfa', 'Ciclev10010153m.g' => 'ccl', 'Ciclev10010559m.g' => 'ccl', 'Ciclev10012029m.g' => 'ccl', 'Ciclev10012130m.g' => 'ccl', 'Ciclev10012142m.g' => 'ccl', 'Ciclev10013482m.g' => 'ccl', 'Ciclev10013808m.g' => 'ccl', 'Ciclev10023799m.g' => 'ccl', 'Ciclev10028740m.g' => 'ccl', 'Ciclev10028746m.g' => 'ccl', 'Ciclev10028749m.g' => 'ccl', 'Ciclev10029080m.g' => 'ccl', 'CiPaw.07G092700' => 'cil', 'CiPaw.08G104500' => 'cil', 'CiPaw.09G017700' => 'cil', 'CiPaw.10G012700' => 'cil', 'CiPaw.11G108800' => 'cil', 'CiPaw.13G132900' => 'cil', 'CiPaw.14G097700' => 'cil', 'ClCG02G022300' => 'cla', 'ClCG10G018690' => 'cla', 'COL.COLO4_09116' => 'col', 'COL.COLO4_10842' => 'col', 'COL.COLO4_22634' => 'col', 'COL.COLO4_29666' => 'col', 'Cpa.g.c31932.1' => 'cpa', 'Cpa.g.sc195.30' => 'cpa', 'Cpa.g.sc195.31' => 'cpa', 'CsaV3_3G037540' => 'csa', 'CsaV3_6G038430' => 'csa', 'CSS0001600' => 'camsi', 'CSS0018930' => 'camsi', 'CSS0023210' => 'camsi', 'CSS0030350' => 'camsi', 'CSS0031216' => 'camsi', 'DCAR_002742' => 'dca', 'DCAR_006172' => 'dca', 'DCAR_010328' => 'dca', 'DCAR_010330' => 'dca', 'DCAR_010331' => 'dca', 'DCAR_012214' => 'dca', 'DCAR_012216' => 'dca', 'DCAR_012222' => 'dca', 'DCAR_012223' => 'dca', 'DCAR_012224' => 'dca', 'DCAR_012225' => 'dca', 'DCAR_013416' => 'dca', 'DCAR_018416' => 'dca', 'Dinv08922' => 'din', 'Dinv11244' => 'din', 'Dinv21161' => 'din', 'Dinv21162' => 'din', 'Dinv22812' => 'din', 'Dinv31724' => 'din', 'Dinv32946' => 'din', 'Duzib093G0493' => 'dzi', 'Duzib128G0290' => 'dzi', 'Duzib133G1205' => 'dzi', 'Duzib138G0696' => 'dzi', 'Duzib150G0782' => 'dzi', 'Duzib168G1783' => 'dzi', 'Duzib170G0799' => 'dzi', 'ECA236G2531' => 'eca', 'ECA247G2715' => 'eca', 'ECA248G3330' => 'eca', 'EL10Ac3g06407' => 'bvu', 'EL10Ac7g16846' => 'bvu', 'Eucgr.J00526' => 'egr', 'Eucgr.K03377' => 'egr', 'FAN02G0071' => 'fan', 'FAN05G2004' => 'fan', 'FAN05G3885' => 'fan', 'FAN11G0065' => 'fan', 'FAN14G4181' => 'fan', 'FAN15G0462' => 'fan', 'FAN16G3341' => 'fan', 'FAN20G1604' => 'fan', 'FAN21G2749' => 'fan', 'FAN24G2931' => 'fan', 'FAN25G1416' => 'fan', 'FAN27G1515' => 'fan', 'FvH4_2g23740' => 'fve', 'FvH4_3g25740' => 'fve', 'FvH4_6g19530' => 'fve', 'Glyma.02G148100' => 'gma', 'Glyma.03G152300' => 'gma', 'Glyma.03G198600' => 'gma', 'Glyma.10G025700' => 'gma', 'Glyma.10G075800' => 'gma', 'Glyma.11G181200' => 'gma', 'Glyma.12G186800' => 'gma', 'Glyma.13G314700' => 'gma', 'Glyma.14G223800' => 'gma', 'Glyma.19G154800' => 'gma', 'Glyma.19G196400' => 'gma', 'Gohir.A02G095300' => 'ghi', 'Gohir.A04G059700' => 'ghi', 'Gohir.A05G079300' => 'ghi', 'Gohir.A07G111100' => 'ghi', 'Gohir.A11G121900' => 'ghi', 'Gohir.D03G088200' => 'ghi', 'Gohir.D04G096500' => 'ghi', 'Gohir.D05G082200' => 'ghi', 'Gohir.D07G114900' => 'ghi', 'Gohir.D11G127100' => 'ghi', 'Gorai.001G123100' => 'gra', 'Gorai.003G073700' => 'gra', 'Gorai.007G135800' => 'gra', 'Gorai.009G083800' => 'gra', 'Gorai.009G399200' => 'gra', 'GSVIVG01011119001' => 'vvi', 'HanXRQChr01g0018041' => 'han', 'HanXRQChr02g0034551' => 'han', 'HanXRQChr04g0098931' => 'han', 'HanXRQChr04g0118771' => 'han', 'HanXRQChr04g0123241' => 'han', 'HanXRQChr10g0282771' => 'han', 'HanXRQChr15g0485071' => 'han', 'HanXRQChr15g0485081' => 'han', 'Haze_04727' => 'cav', 'Haze_09214' => 'cav', 'Haze_19656' => 'cav', 'Haze_23343' => 'cav', 'Hma1.2p1_0820F.1_g224090' => 'hma', 'HPP92_009882' => 'vpl', 'HPP92_011809' => 'vpl', 'Lalb_Chr01g0017941' => 'lal', 'Lalb_Chr02g0142801' => 'lal', 'Lalb_Chr02g0154771' => 'lal', 'Lalb_Chr03g0028271' => 'lal', 'Lalb_Chr24g0393471' => 'lal', 'Lalb_Chr24g0393481' => 'lal', 'Lj1A258G36' => 'lonja', 'Lj1A46T42' => 'lonja', 'Lj1g0010769' => 'lja', 'Lj1P258T28' => 'lonja', 'Lj2A969G69' => 'lonja', 'Lj2C969G11' => 'lonja', 'Lj2C969T12' => 'lonja', 'Lj2C971G3' => 'lonja', 'Lj2C971T4' => 'lonja', 'Lj2P144T15' => 'lonja', 'Lj2P151T26' => 'lonja', 'Lj2P969T21' => 'lonja', 'Lj2P969T43' => 'lonja', 'Lj2P970T14' => 'lonja', 'Lj2P970T27' => 'lonja', 'Lj2P970T38' => 'lonja', 'Lj2P970T53' => 'lonja', 'Lj2P970T55' => 'lonja', 'Lj3g0009564' => 'lja', 'Lj3g0017769' => 'lja', 'Lj3g0024723' => 'lja', 'Lj5g0015050' => 'lja', 'Lj5g0021329' => 'lja', 'Lj6P612T10' => 'lonja', 'Lsat_1_v5_gn_1_59920' => 'lsa', 'Lsat_1_v5_gn_1_85820' => 'lsa', 'Lsat_1_v5_gn_1_86140' => 'lsa', 'Lsat_1_v5_gn_1_86180' => 'lsa', 'Lsat_1_v5_gn_1_86240' => 'lsa', 'Lsat_1_v5_gn_3_82201' => 'lsa', 'Lsat_1_v5_gn_6_37100' => 'lsa', 'Lsat_1_v5_gn_8_56220' => 'lsa', 'Lsat_1_v5_gn_9_4061' => 'lsa', 'Lsat_1_v5_gn_9_71981' => 'lsa', 'Lsat_1_v5_gn_9_72200' => 'lsa', 'Lsat_1_v5_gn_9_72220' => 'lsa', 'Lsat_1_v5_gn_9_72840' => 'lsa', 'Lsat_1_v5_gn_9_73000' => 'lsa', 'Lsat_1_v5_gn_9_81961' => 'lsa', 'Manes.01G000434' => 'mes', 'Manes.01G208700' => 'mes', 'Manes.09G051600' => 'mes', 'Manes.11G164500' => 'mes', 'Mapoly0027s0014' => 'mpo', 'MBI01_g41238_MAGBIO' => 'mbi', 'MBI01_g44955_MAGBIO' => 'mbi', 'MBI04_g19008_MAGBIO' => 'mbi', 'MBI17_g40298_MAGBIO' => 'mbi', 'MD03G1150200' => 'mdo', 'MD03G1150400' => 'mdo', 'MD03G1267000' => 'mdo', 'MD11G1169600' => 'mdo', 'MD11G1169800' => 'mdo', 'MD11G1287400' => 'mdo', 'MD12G1031600' => 'mdo', 'MD14G1031900' => 'mdo', 'Medtr1g058490' => 'mtr', 'Medtr1g060460' => 'mtr', 'Medtr1g072360' => 'mtr', 'Medtr2g086920' => 'mtr', 'Medtr3g466280' => 'mtr', 'Medtr3g466300' => 'mtr', 'Medtr3g466330' => 'mtr', 'Medtr3g466350' => 'mtr', 'Medtr4g052460' => 'mtr', 'Medtr5g013660' => 'mtr', 'Medtr7g105320' => 'mtr', 'Medtr8g021080' => 'mtr', 'Medtr8g021090' => 'mtr', 'Medtr8g022730' => 'mtr', 'MELO3C009497.2' => 'cme', 'MELO3C014507.2' => 'cme', 'Migut.D02365' => 'egut', 'Migut.J00998' => 'egut', 'Migut.L01805' => 'egut', 'Migut.N02471' => 'egut', 'MSTRG.17698' => 'ama', 'MSTRG.18773' => 'ama', 'MSTRG.19279' => 'ama', 'MSTRG.21567' => 'ama', 'MSTRG.5867' => 'ama', 'Nitab4.5_0000731g0010' => 'nta', 'Nitab4.5_0001028g0070' => 'nta', 'Nitab4.5_0001933g0130' => 'nta', 'Nitab4.5_0002036g0040' => 'nta', 'Nitab4.5_0008177g0020' => 'nta', 'Nn1g02184' => 'nnu', 'Nn2g14229' => 'nnu', 'Nn6g34804' => 'nnu', 'Oeu015964.1' => 'oeu', 'Oeu022879.1' => 'oeu', 'Oeu047417.1' => 'oeu', 'Oeu047834.1' => 'oeu', 'Oeu051601.1' => 'oeu', 'Oeu058570.1' => 'oeu', 'Os01g0685300' => 'osa', 'Os02g0535901' => 'osa', 'Os04g0414500' => 'osa', 'Os11g0155100' => 'osa', 'Os12g0156500' => 'osa', 'Peaxi162Scf00013g00132' => 'pax', 'Peaxi162Scf00069g00003' => 'pax', 'Peaxi162Scf00096g00826' => 'pax', 'Peaxi162Scf00224g00034' => 'pax', 'Peaxi162Scf00338g00064' => 'pax', 'Peaxi162Scf00345g01028' => 'pax', 'PGR031G2343' => 'pgr', 'PGR044G0094' => 'pgr', 'PGR044G1888' => 'pgr', 'PGR102G1477' => 'pgr', 'PGR119G1239' => 'pgr', 'PGR142G3875' => 'pgr', 'PGSC0003DMG400026346' => 'stu', 'PGSC0003DMG400028160' => 'stu', 'Phvul.001G149900' => 'pvu', 'Phvul.001G192900' => 'pvu', 'Phvul.005G121900' => 'pvu', 'Phvul.007G171100' => 'pvu', 'Phvul.011G096300' => 'pvu', 'Potri.001G452000' => 'ptr', 'Potri.002G054500' => 'ptr', 'Potri.004G199300' => 'ptr', 'Potri.005G208200' => 'ptr', 'Potri.006G208400' => 'ptr', 'Potri.009G160700' => 'ptr', 'Pp3c20_18520' => 'ppa', 'Pp3c23_16130' => 'ppa', 'Pp3c23_3650' => 'ppa', 'Prupe.6G137300' => 'ppe', 'Prupe.7G100900' => 'ppe', 'Prupe.8G242700' => 'ppe', 'Psat3g031200' => 'psa', 'Psat5g260120' => 'psa', 'Psat6g060560' => 'psa', 'Psat7g186440' => 'psa', 'PSO170G3673' => 'pso', 'PSO302G0139' => 'pso', 'PSO339G4685' => 'pso', 'PSO339G5488' => 'pso', 'PSO384G0232' => 'pso', 'PSO801G0103' => 'pso', 'QL01p011805' => 'qlo', 'QL02p027135' => 'qlo', 'QL07p038097' => 'qlo', 'QL08p000221' => 'qlo', 'QL08p000251' => 'qlo', 'QL12p022121' => 'qlo', 'RcHm_v2.0_Chr3g0474871' => 'rch', 'RcHm_v2.0_Chr5g0046101' => 'rch', 'RcHm_v2.0_Chr6g0291231' => 'rch', 'Rhsim01G0203100' => 'rsi', 'Rhsim01G0203200' => 'rsi', 'Rhsim01G0203300' => 'rsi', 'Rhsim01G0203600' => 'rsi', 'Rhsim01G0275400' => 'rsi', 'Rhsim03G0069700' => 'rsi', 'Rhsim13G0195000' => 'rsi', 'Sabra02G0044300' => 'sbr', 'Sabra04G0134400' => 'sbr', 'Sabra05G0158400' => 'sbr', 'Sabra06G0160300' => 'sbr', 'Sabra09G0125700' => 'sbr', 'Sabra16G0305200' => 'sbr', 'SalBow3G2393' => 'sbo', 'SalBow3G4144' => 'sbo', 'SalBow4G1376' => 'sbo', 'SalBow5G5688' => 'sbo', 'SalBow6G5902' => 'sbo', 'Sc02g0000450' => 'sci', 'Sc19g0004440' => 'sci', 'Sed0025213' => 'sed', 'Sed0027957' => 'sed', 'SEGI_09392' => 'sgi', 'SEGI_11383' => 'sgi', 'SEGI_16106' => 'sgi', 'SEGI_17994' => 'sgi', 'SEGI_21889' => 'sgi', 'SEGI_26855' => 'sgi', 'SEGI_27650' => 'sgi', 'SEGI_31567' => 'sgi', 'SEGI_31875' => 'sgi', 'SEGI_32242' => 'sgi', 'SEGI_32330' => 'sgi', 'SEGI_33640' => 'sgi', 'SEGI_40647' => 'sgi', 'SEGI_41552' => 'sgi', 'SGA_v2.0_scaffold13G06693' => 'sas', 'SGA_v2.0_scaffold177G39440' => 'sas', 'SGA_v2.0_scaffold36G14254' => 'sas', 'SGA_v2.0_scaffold7G03997' => 'sas', 'SMO358G0574' => 'smo', 'Solyc09g065020.4' => 'sly', 'Solyc10g083230.1' => 'sly', 'Solyc11g068710.3' => 'sly', 'Sopen09g026750' => 'spe', 'Sopen10g032710' => 'spe', 'Sopen11g027420' => 'spe', 'Sp4g10120' => 'spa', 'Sp4g18320' => 'spa', 'Sp5g16910' => 'spa', 'TAR362G0290' => 'tar', 'TAR623G1074' => 'tar', 'TAR633G1115' => 'tar', 'TAR633G1388' => 'tar', 'TAR636G0436' => 'tar', 'TAR636G1412' => 'tar', 'THA.LOC104799555' => 'tha', 'THA.LOC104800515' => 'tha', 'THA.LOC104817554' => 'tha', 'THA.LOC104820728' => 'tha', 'THA.LOC104826437' => 'tha', 'Thecc.01G281400' => 'tca', 'Thecc.03G216100' => 'tca', 'Thecc.05G096200' => 'tca', 'Thecc.09G278000' => 'tca', 'Thecc.09G278100' => 'tca', 'Thhalv10002035m.g' => 'esa', 'Thhalv10016952m.g' => 'esa', 'TPR.G11608' => 'tpr', 'TPR.G15178' => 'tpr', 'TPR.G1585' => 'tpr', 'TPR.G16659' => 'tpr', 'TPR.G16662' => 'tpr', 'TPR.G16673' => 'tpr', 'TPR.G17223' => 'tpr', 'TPR.G23325' => 'tpr', 'TPR.G27006' => 'tpr', 'TPR.G32758' => 'tpr', 'TPR.G36506' => 'tpr', 'TPR.G39610' => 'tpr', 'TPR.G4529' => 'tpr', 'TWI09G0769' => 'twi', 'TWI23G1064' => 'twi', 'TWI39G0306' => 'twi', 'TWI39G0321' => 'twi', 'TWI39G0995' => 'twi', 'TWI53G0879' => 'twi', 'TWI63G0398' => 'twi', 'TWI79G0358' => 'twi', 'TWI79G1506' => 'twi', 'unitig_26.g10153' => 'ugi', 'unitig_26.g9258' => 'ugi', 'unitig_749.g13742' => 'ugi', 'unitig_8.g3660' => 'ugi', 'unitig_899.g15375' => 'ugi', 'VMungo0720G2940' => 'vmu', 'VMungo1080G0702' => 'vmu', 'VMungo1127G0911' => 'vmu', 'VMungo1383G0438' => 'vmu', 'VMungo1383G1863' => 'vmu', 'Zm00001eb017340' => 'zma', 'Zm00001eb083710' => 'zma', 'Zm00001eb197220' => 'zma', 'Zm00001eb197260' => 'zma', 'Zm00001eb242900' => 'zma', 'Zm00001eb421990' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001305' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001305' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001305' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001305' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001305', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '481', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p26680' => 'bna', 'A04p20880' => 'bna', 'A04p27630' => 'bna', 'A05p09720' => 'bna', 'Aa31LG4G13820' => 'aar', 'Aa31LG5G21230' => 'aar', 'Aa31LG5G8720' => 'aar', 'Actinidia05398' => 'ach', 'Actinidia07262' => 'ach', 'Actinidia22229' => 'ach', 'Actinidia24232' => 'ach', 'Actinidia24883' => 'ach', 'Actinidia35473' => 'ach', 'Actinidia37071' => 'ach', 'Ah.08g210360' => 'amhyb', 'AL4G21260' => 'aly', 'AL4G32180' => 'aly', 'AL5G22470' => 'aly', 'Aqoxy2G01050' => 'aox', 'Aqoxy2G03288' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45DTJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RJM5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCEI7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9YQVF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D86BWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1GWNH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP0AEQ' => 'arhy', 'AT2G27310' => 'ath', 'AT2G36090' => 'ath', 'AT3G44326' => 'ath', 'ATR0081G028' => 'atr', 'ATR0579G049' => 'atr', 'ATR0626G411' => 'atr', 'Atru.chr3.3162' => 'acertr', 'Atru.chr3.3165' => 'acertr', 'Atru.chr5.1400' => 'acertr', 'Atru.chr5.2517' => 'acertr', 'Atru.chr8.1438' => 'acertr', 'Atru.chr9.1836' => 'acertr', 'AUR62006243' => 'cqu', 'AUR62028481' => 'cqu', 'AUR62038061' => 'cqu', 'AUR62038187' => 'cqu', 'BcaB01g03064' => 'bca', 'BcaB02g09385' => 'bca', 'BcaB06g28141' => 'bca', 'BcaB06g28914' => 'bca', 'BcaC01g04933' => 'bca', 'BcaC02g07632' => 'bca', 'BcaC02g08249' => 'bca', 'BcaC02g08250' => 'bca', 'BcaC02g08252' => 'bca', 'BcaC02g11710' => 'bca', 'BNapus_Darmor_BZH_scaffold_239p00140' => 'bna', 'BolC3t15538H' => 'bol', 'BolC4t22851H' => 'bol', 'BolC4t27201H' => 'bol', 'BolC4t27993H' => 'bol', 'BraA03t11879Z' => 'bra', 'BraA04t17659Z' => 'bra', 'BraA04t18258Z' => 'bra', 'BraA05t19928Z' => 'bra', 'C03p31960' => 'bna', 'C04p12100' => 'bna', 'C04p56690' => 'bna', 'C04p65140' => 'bna', 'CAN.G242.18' => 'can', 'CAN.G745.20' => 'can', 'CAN.G841.16' => 'can', 'CANSAT25G2734' => 'cansat', 'CANSAT54G0611' => 'cansat', 'CANSAT64G2696' => 'cansat', 'CARHR104560' => 'chi', 'CARHR119880' => 'chi', 'CARHR130340' => 'chi', 'Carub.0004s0794' => 'cru', 'Carub.0004s1783' => 'cru', 'Carub.0005s1004' => 'cru', 'Ca_01646_v3' => 'car', 'Ca_09027_v3' => 'car', 'Ca_09762_v3' => 'car', 'Ca_19444_v3' => 'car', 'Ca_25954_v3' => 'car', 'Cc01_g08790' => 'ccan', 'Cc01_g19610' => 'ccan', 'Cc06_g06220' => 'ccan', 'CDE02G1508' => 'cde', 'CDE04G2896' => 'cde', 'CDE08G1152' => 'cde', 'Cfa006127' => 'cfa', 'Cfa009984' => 'cfa', 'Cfa011889' => 'cfa', 'Cfa016651' => 'cfa', 'Ciclev10010153m.g' => 'ccl', 'Ciclev10010559m.g' => 'ccl', 'Ciclev10012029m.g' => 'ccl', 'Ciclev10012130m.g' => 'ccl', 'Ciclev10012142m.g' => 'ccl', 'Ciclev10013482m.g' => 'ccl', 'Ciclev10013808m.g' => 'ccl', 'Ciclev10023799m.g' => 'ccl', 'Ciclev10028740m.g' => 'ccl', 'Ciclev10028746m.g' => 'ccl', 'Ciclev10028749m.g' => 'ccl', 'Ciclev10029080m.g' => 'ccl', 'CiPaw.07G092700' => 'cil', 'CiPaw.08G104500' => 'cil', 'CiPaw.09G017700' => 'cil', 'CiPaw.10G012700' => 'cil', 'CiPaw.11G108800' => 'cil', 'CiPaw.13G132900' => 'cil', 'CiPaw.14G097700' => 'cil', 'ClCG02G022300' => 'cla', 'ClCG10G018690' => 'cla', 'COL.COLO4_09116' => 'col', 'COL.COLO4_10842' => 'col', 'COL.COLO4_22634' => 'col', 'COL.COLO4_29666' => 'col', 'Cpa.g.c31932.1' => 'cpa', 'Cpa.g.sc195.30' => 'cpa', 'Cpa.g.sc195.31' => 'cpa', 'CsaV3_3G037540' => 'csa', 'CsaV3_6G038430' => 'csa', 'CSS0001600' => 'camsi', 'CSS0018930' => 'camsi', 'CSS0023210' => 'camsi', 'CSS0030350' => 'camsi', 'CSS0031216' => 'camsi', 'DCAR_002742' => 'dca', 'DCAR_006172' => 'dca', 'DCAR_010328' => 'dca', 'DCAR_010330' => 'dca', 'DCAR_010331' => 'dca', 'DCAR_012214' => 'dca', 'DCAR_012216' => 'dca', 'DCAR_012222' => 'dca', 'DCAR_012223' => 'dca', 'DCAR_012224' => 'dca', 'DCAR_012225' => 'dca', 'DCAR_013416' => 'dca', 'DCAR_018416' => 'dca', 'Dinv08922' => 'din', 'Dinv11244' => 'din', 'Dinv21161' => 'din', 'Dinv21162' => 'din', 'Dinv22812' => 'din', 'Dinv31724' => 'din', 'Dinv32946' => 'din', 'Duzib093G0493' => 'dzi', 'Duzib128G0290' => 'dzi', 'Duzib133G1205' => 'dzi', 'Duzib138G0696' => 'dzi', 'Duzib150G0782' => 'dzi', 'Duzib168G1783' => 'dzi', 'Duzib170G0799' => 'dzi', 'ECA236G2531' => 'eca', 'ECA247G2715' => 'eca', 'ECA248G3330' => 'eca', 'EL10Ac3g06407' => 'bvu', 'EL10Ac7g16846' => 'bvu', 'Eucgr.J00526' => 'egr', 'Eucgr.K03377' => 'egr', 'FAN02G0071' => 'fan', 'FAN05G2004' => 'fan', 'FAN05G3885' => 'fan', 'FAN11G0065' => 'fan', 'FAN14G4181' => 'fan', 'FAN15G0462' => 'fan', 'FAN16G3341' => 'fan', 'FAN20G1604' => 'fan', 'FAN21G2749' => 'fan', 'FAN24G2931' => 'fan', 'FAN25G1416' => 'fan', 'FAN27G1515' => 'fan', 'FvH4_2g23740' => 'fve', 'FvH4_3g25740' => 'fve', 'FvH4_6g19530' => 'fve', 'Glyma.02G148100' => 'gma', 'Glyma.03G152300' => 'gma', 'Glyma.03G198600' => 'gma', 'Glyma.10G025700' => 'gma', 'Glyma.10G075800' => 'gma', 'Glyma.11G181200' => 'gma', 'Glyma.12G186800' => 'gma', 'Glyma.13G314700' => 'gma', 'Glyma.14G223800' => 'gma', 'Glyma.19G154800' => 'gma', 'Glyma.19G196400' => 'gma', 'Gohir.A02G095300' => 'ghi', 'Gohir.A04G059700' => 'ghi', 'Gohir.A05G079300' => 'ghi', 'Gohir.A07G111100' => 'ghi', 'Gohir.A11G121900' => 'ghi', 'Gohir.D03G088200' => 'ghi', 'Gohir.D04G096500' => 'ghi', 'Gohir.D05G082200' => 'ghi', 'Gohir.D07G114900' => 'ghi', 'Gohir.D11G127100' => 'ghi', 'Gorai.001G123100' => 'gra', 'Gorai.003G073700' => 'gra', 'Gorai.007G135800' => 'gra', 'Gorai.009G083800' => 'gra', 'Gorai.009G399200' => 'gra', 'GSVIVG01011119001' => 'vvi', 'HanXRQChr01g0018041' => 'han', 'HanXRQChr02g0034551' => 'han', 'HanXRQChr04g0098931' => 'han', 'HanXRQChr04g0118771' => 'han', 'HanXRQChr04g0123241' => 'han', 'HanXRQChr10g0282771' => 'han', 'HanXRQChr15g0485071' => 'han', 'HanXRQChr15g0485081' => 'han', 'Haze_04727' => 'cav', 'Haze_09214' => 'cav', 'Haze_19656' => 'cav', 'Haze_23343' => 'cav', 'Hma1.2p1_0820F.1_g224090' => 'hma', 'HPP92_009882' => 'vpl', 'HPP92_011809' => 'vpl', 'Lalb_Chr01g0017941' => 'lal', 'Lalb_Chr02g0142801' => 'lal', 'Lalb_Chr02g0154771' => 'lal', 'Lalb_Chr03g0028271' => 'lal', 'Lalb_Chr24g0393471' => 'lal', 'Lalb_Chr24g0393481' => 'lal', 'Lj1A258G36' => 'lonja', 'Lj1A46T42' => 'lonja', 'Lj1g0010769' => 'lja', 'Lj1P258T28' => 'lonja', 'Lj2A969G69' => 'lonja', 'Lj2C969G11' => 'lonja', 'Lj2C969T12' => 'lonja', 'Lj2C971G3' => 'lonja', 'Lj2C971T4' => 'lonja', 'Lj2P144T15' => 'lonja', 'Lj2P151T26' => 'lonja', 'Lj2P969T21' => 'lonja', 'Lj2P969T43' => 'lonja', 'Lj2P970T14' => 'lonja', 'Lj2P970T27' => 'lonja', 'Lj2P970T38' => 'lonja', 'Lj2P970T53' => 'lonja', 'Lj2P970T55' => 'lonja', 'Lj3g0009564' => 'lja', 'Lj3g0017769' => 'lja', 'Lj3g0024723' => 'lja', 'Lj5g0015050' => 'lja', 'Lj5g0021329' => 'lja', 'Lj6P612T10' => 'lonja', 'Lsat_1_v5_gn_1_59920' => 'lsa', 'Lsat_1_v5_gn_1_85820' => 'lsa', 'Lsat_1_v5_gn_1_86140' => 'lsa', 'Lsat_1_v5_gn_1_86180' => 'lsa', 'Lsat_1_v5_gn_1_86240' => 'lsa', 'Lsat_1_v5_gn_3_82201' => 'lsa', 'Lsat_1_v5_gn_6_37100' => 'lsa', 'Lsat_1_v5_gn_8_56220' => 'lsa', 'Lsat_1_v5_gn_9_4061' => 'lsa', 'Lsat_1_v5_gn_9_71981' => 'lsa', 'Lsat_1_v5_gn_9_72200' => 'lsa', 'Lsat_1_v5_gn_9_72220' => 'lsa', 'Lsat_1_v5_gn_9_72840' => 'lsa', 'Lsat_1_v5_gn_9_73000' => 'lsa', 'Lsat_1_v5_gn_9_81961' => 'lsa', 'Manes.01G000434' => 'mes', 'Manes.01G208700' => 'mes', 'Manes.09G051600' => 'mes', 'Manes.11G164500' => 'mes', 'Mapoly0027s0014' => 'mpo', 'MBI01_g41238_MAGBIO' => 'mbi', 'MBI01_g44955_MAGBIO' => 'mbi', 'MBI04_g19008_MAGBIO' => 'mbi', 'MBI17_g40298_MAGBIO' => 'mbi', 'MD03G1150200' => 'mdo', 'MD03G1150400' => 'mdo', 'MD03G1267000' => 'mdo', 'MD11G1169600' => 'mdo', 'MD11G1169800' => 'mdo', 'MD11G1287400' => 'mdo', 'MD12G1031600' => 'mdo', 'MD14G1031900' => 'mdo', 'Medtr1g058490' => 'mtr', 'Medtr1g060460' => 'mtr', 'Medtr1g072360' => 'mtr', 'Medtr2g086920' => 'mtr', 'Medtr3g466280' => 'mtr', 'Medtr3g466300' => 'mtr', 'Medtr3g466330' => 'mtr', 'Medtr3g466350' => 'mtr', 'Medtr4g052460' => 'mtr', 'Medtr5g013660' => 'mtr', 'Medtr7g105320' => 'mtr', 'Medtr8g021080' => 'mtr', 'Medtr8g021090' => 'mtr', 'Medtr8g022730' => 'mtr', 'MELO3C009497.2' => 'cme', 'MELO3C014507.2' => 'cme', 'Migut.D02365' => 'egut', 'Migut.J00998' => 'egut', 'Migut.L01805' => 'egut', 'Migut.N02471' => 'egut', 'MSTRG.17698' => 'ama', 'MSTRG.18773' => 'ama', 'MSTRG.19279' => 'ama', 'MSTRG.21567' => 'ama', 'MSTRG.5867' => 'ama', 'Nitab4.5_0000731g0010' => 'nta', 'Nitab4.5_0001028g0070' => 'nta', 'Nitab4.5_0001933g0130' => 'nta', 'Nitab4.5_0002036g0040' => 'nta', 'Nitab4.5_0008177g0020' => 'nta', 'Nn1g02184' => 'nnu', 'Nn2g14229' => 'nnu', 'Nn6g34804' => 'nnu', 'Oeu015964.1' => 'oeu', 'Oeu022879.1' => 'oeu', 'Oeu047417.1' => 'oeu', 'Oeu047834.1' => 'oeu', 'Oeu051601.1' => 'oeu', 'Oeu058570.1' => 'oeu', 'Os01g0685300' => 'osa', 'Os02g0535901' => 'osa', 'Os04g0414500' => 'osa', 'Os11g0155100' => 'osa', 'Os12g0156500' => 'osa', 'Peaxi162Scf00013g00132' => 'pax', 'Peaxi162Scf00069g00003' => 'pax', 'Peaxi162Scf00096g00826' => 'pax', 'Peaxi162Scf00224g00034' => 'pax', 'Peaxi162Scf00338g00064' => 'pax', 'Peaxi162Scf00345g01028' => 'pax', 'PGR031G2343' => 'pgr', 'PGR044G0094' => 'pgr', 'PGR044G1888' => 'pgr', 'PGR102G1477' => 'pgr', 'PGR119G1239' => 'pgr', 'PGR142G3875' => 'pgr', 'PGSC0003DMG400026346' => 'stu', 'PGSC0003DMG400028160' => 'stu', 'Phvul.001G149900' => 'pvu', 'Phvul.001G192900' => 'pvu', 'Phvul.005G121900' => 'pvu', 'Phvul.007G171100' => 'pvu', 'Phvul.011G096300' => 'pvu', 'Potri.001G452000' => 'ptr', 'Potri.002G054500' => 'ptr', 'Potri.004G199300' => 'ptr', 'Potri.005G208200' => 'ptr', 'Potri.006G208400' => 'ptr', 'Potri.009G160700' => 'ptr', 'Pp3c20_18520' => 'ppa', 'Pp3c23_16130' => 'ppa', 'Pp3c23_3650' => 'ppa', 'Prupe.6G137300' => 'ppe', 'Prupe.7G100900' => 'ppe', 'Prupe.8G242700' => 'ppe', 'Psat3g031200' => 'psa', 'Psat5g260120' => 'psa', 'Psat6g060560' => 'psa', 'Psat7g186440' => 'psa', 'PSO170G3673' => 'pso', 'PSO302G0139' => 'pso', 'PSO339G4685' => 'pso', 'PSO339G5488' => 'pso', 'PSO384G0232' => 'pso', 'PSO801G0103' => 'pso', 'QL01p011805' => 'qlo', 'QL02p027135' => 'qlo', 'QL07p038097' => 'qlo', 'QL08p000221' => 'qlo', 'QL08p000251' => 'qlo', 'QL12p022121' => 'qlo', 'RcHm_v2.0_Chr3g0474871' => 'rch', 'RcHm_v2.0_Chr5g0046101' => 'rch', 'RcHm_v2.0_Chr6g0291231' => 'rch', 'Rhsim01G0203100' => 'rsi', 'Rhsim01G0203200' => 'rsi', 'Rhsim01G0203300' => 'rsi', 'Rhsim01G0203600' => 'rsi', 'Rhsim01G0275400' => 'rsi', 'Rhsim03G0069700' => 'rsi', 'Rhsim13G0195000' => 'rsi', 'Sabra02G0044300' => 'sbr', 'Sabra04G0134400' => 'sbr', 'Sabra05G0158400' => 'sbr', 'Sabra06G0160300' => 'sbr', 'Sabra09G0125700' => 'sbr', 'Sabra16G0305200' => 'sbr', 'SalBow3G2393' => 'sbo', 'SalBow3G4144' => 'sbo', 'SalBow4G1376' => 'sbo', 'SalBow5G5688' => 'sbo', 'SalBow6G5902' => 'sbo', 'Sc02g0000450' => 'sci', 'Sc19g0004440' => 'sci', 'Sed0025213' => 'sed', 'Sed0027957' => 'sed', 'SEGI_09392' => 'sgi', 'SEGI_11383' => 'sgi', 'SEGI_16106' => 'sgi', 'SEGI_17994' => 'sgi', 'SEGI_21889' => 'sgi', 'SEGI_26855' => 'sgi', 'SEGI_27650' => 'sgi', 'SEGI_31567' => 'sgi', 'SEGI_31875' => 'sgi', 'SEGI_32242' => 'sgi', 'SEGI_32330' => 'sgi', 'SEGI_33640' => 'sgi', 'SEGI_40647' => 'sgi', 'SEGI_41552' => 'sgi', 'SGA_v2.0_scaffold13G06693' => 'sas', 'SGA_v2.0_scaffold177G39440' => 'sas', 'SGA_v2.0_scaffold36G14254' => 'sas', 'SGA_v2.0_scaffold7G03997' => 'sas', 'SMO358G0574' => 'smo', 'Solyc09g065020.4' => 'sly', 'Solyc10g083230.1' => 'sly', 'Solyc11g068710.3' => 'sly', 'Sopen09g026750' => 'spe', 'Sopen10g032710' => 'spe', 'Sopen11g027420' => 'spe', 'Sp4g10120' => 'spa', 'Sp4g18320' => 'spa', 'Sp5g16910' => 'spa', 'TAR362G0290' => 'tar', 'TAR623G1074' => 'tar', 'TAR633G1115' => 'tar', 'TAR633G1388' => 'tar', 'TAR636G0436' => 'tar', 'TAR636G1412' => 'tar', 'THA.LOC104799555' => 'tha', 'THA.LOC104800515' => 'tha', 'THA.LOC104817554' => 'tha', 'THA.LOC104820728' => 'tha', 'THA.LOC104826437' => 'tha', 'Thecc.01G281400' => 'tca', 'Thecc.03G216100' => 'tca', 'Thecc.05G096200' => 'tca', 'Thecc.09G278000' => 'tca', 'Thecc.09G278100' => 'tca', 'Thhalv10002035m.g' => 'esa', 'Thhalv10016952m.g' => 'esa', 'TPR.G11608' => 'tpr', 'TPR.G15178' => 'tpr', 'TPR.G1585' => 'tpr', 'TPR.G16659' => 'tpr', 'TPR.G16662' => 'tpr', 'TPR.G16673' => 'tpr', 'TPR.G17223' => 'tpr', 'TPR.G23325' => 'tpr', 'TPR.G27006' => 'tpr', 'TPR.G32758' => 'tpr', 'TPR.G36506' => 'tpr', 'TPR.G39610' => 'tpr', 'TPR.G4529' => 'tpr', 'TWI09G0769' => 'twi', 'TWI23G1064' => 'twi', 'TWI39G0306' => 'twi', 'TWI39G0321' => 'twi', 'TWI39G0995' => 'twi', 'TWI53G0879' => 'twi', 'TWI63G0398' => 'twi', 'TWI79G0358' => 'twi', 'TWI79G1506' => 'twi', 'unitig_26.g10153' => 'ugi', 'unitig_26.g9258' => 'ugi', 'unitig_749.g13742' => 'ugi', 'unitig_8.g3660' => 'ugi', 'unitig_899.g15375' => 'ugi', 'VMungo0720G2940' => 'vmu', 'VMungo1080G0702' => 'vmu', 'VMungo1127G0911' => 'vmu', 'VMungo1383G0438' => 'vmu', 'VMungo1383G1863' => 'vmu', 'Zm00001eb017340' => 'zma', 'Zm00001eb083710' => 'zma', 'Zm00001eb197220' => 'zma', 'Zm00001eb197260' => 'zma', 'Zm00001eb242900' => 'zma', 'Zm00001eb421990' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001305', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001305' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001305', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '481', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001305' ) ), 'genes' => array( 'A03p26680' => 'bna', 'A04p20880' => 'bna', 'A04p27630' => 'bna', 'A05p09720' => 'bna', 'Aa31LG4G13820' => 'aar', 'Aa31LG5G21230' => 'aar', 'Aa31LG5G8720' => 'aar', 'Actinidia05398' => 'ach', 'Actinidia07262' => 'ach', 'Actinidia22229' => 'ach', 'Actinidia24232' => 'ach', 'Actinidia24883' => 'ach', 'Actinidia35473' => 'ach', 'Actinidia37071' => 'ach', 'Ah.08g210360' => 'amhyb', 'AL4G21260' => 'aly', 'AL4G32180' => 'aly', 'AL5G22470' => 'aly', 'Aqoxy2G01050' => 'aox', 'Aqoxy2G03288' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45DTJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RJM5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCEI7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9YQVF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D86BWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1GWNH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP0AEQ' => 'arhy', 'AT2G27310' => 'ath', 'AT2G36090' => 'ath', 'AT3G44326' => 'ath', 'ATR0081G028' => 'atr', 'ATR0579G049' => 'atr', 'ATR0626G411' => 'atr', 'Atru.chr3.3162' => 'acertr', 'Atru.chr3.3165' => 'acertr', 'Atru.chr5.1400' => 'acertr', 'Atru.chr5.2517' => 'acertr', 'Atru.chr8.1438' => 'acertr', 'Atru.chr9.1836' => 'acertr', 'AUR62006243' => 'cqu', 'AUR62028481' => 'cqu', 'AUR62038061' => 'cqu', 'AUR62038187' => 'cqu', 'BcaB01g03064' => 'bca', 'BcaB02g09385' => 'bca', 'BcaB06g28141' => 'bca', 'BcaB06g28914' => 'bca', 'BcaC01g04933' => 'bca', 'BcaC02g07632' => 'bca', 'BcaC02g08249' => 'bca', 'BcaC02g08250' => 'bca', 'BcaC02g08252' => 'bca', 'BcaC02g11710' => 'bca', 'BNapus_Darmor_BZH_scaffold_239p00140' => 'bna', 'BolC3t15538H' => 'bol', 'BolC4t22851H' => 'bol', 'BolC4t27201H' => 'bol', 'BolC4t27993H' => 'bol', 'BraA03t11879Z' => 'bra', 'BraA04t17659Z' => 'bra', 'BraA04t18258Z' => 'bra', 'BraA05t19928Z' => 'bra', 'C03p31960' => 'bna', 'C04p12100' => 'bna', 'C04p56690' => 'bna', 'C04p65140' => 'bna', 'CAN.G242.18' => 'can', 'CAN.G745.20' => 'can', 'CAN.G841.16' => 'can', 'CANSAT25G2734' => 'cansat', 'CANSAT54G0611' => 'cansat', 'CANSAT64G2696' => 'cansat', 'CARHR104560' => 'chi', 'CARHR119880' => 'chi', 'CARHR130340' => 'chi', 'Carub.0004s0794' => 'cru', 'Carub.0004s1783' => 'cru', 'Carub.0005s1004' => 'cru', 'Ca_01646_v3' => 'car', 'Ca_09027_v3' => 'car', 'Ca_09762_v3' => 'car', 'Ca_19444_v3' => 'car', 'Ca_25954_v3' => 'car', 'Cc01_g08790' => 'ccan', 'Cc01_g19610' => 'ccan', 'Cc06_g06220' => 'ccan', 'CDE02G1508' => 'cde', 'CDE04G2896' => 'cde', 'CDE08G1152' => 'cde', 'Cfa006127' => 'cfa', 'Cfa009984' => 'cfa', 'Cfa011889' => 'cfa', 'Cfa016651' => 'cfa', 'Ciclev10010153m.g' => 'ccl', 'Ciclev10010559m.g' => 'ccl', 'Ciclev10012029m.g' => 'ccl', 'Ciclev10012130m.g' => 'ccl', 'Ciclev10012142m.g' => 'ccl', 'Ciclev10013482m.g' => 'ccl', 'Ciclev10013808m.g' => 'ccl', 'Ciclev10023799m.g' => 'ccl', 'Ciclev10028740m.g' => 'ccl', 'Ciclev10028746m.g' => 'ccl', 'Ciclev10028749m.g' => 'ccl', 'Ciclev10029080m.g' => 'ccl', 'CiPaw.07G092700' => 'cil', 'CiPaw.08G104500' => 'cil', 'CiPaw.09G017700' => 'cil', 'CiPaw.10G012700' => 'cil', 'CiPaw.11G108800' => 'cil', 'CiPaw.13G132900' => 'cil', 'CiPaw.14G097700' => 'cil', 'ClCG02G022300' => 'cla', 'ClCG10G018690' => 'cla', 'COL.COLO4_09116' => 'col', 'COL.COLO4_10842' => 'col', 'COL.COLO4_22634' => 'col', 'COL.COLO4_29666' => 'col', 'Cpa.g.c31932.1' => 'cpa', 'Cpa.g.sc195.30' => 'cpa', 'Cpa.g.sc195.31' => 'cpa', 'CsaV3_3G037540' => 'csa', 'CsaV3_6G038430' => 'csa', 'CSS0001600' => 'camsi', 'CSS0018930' => 'camsi', 'CSS0023210' => 'camsi', 'CSS0030350' => 'camsi', 'CSS0031216' => 'camsi', 'DCAR_002742' => 'dca', 'DCAR_006172' => 'dca', 'DCAR_010328' => 'dca', 'DCAR_010330' => 'dca', 'DCAR_010331' => 'dca', 'DCAR_012214' => 'dca', 'DCAR_012216' => 'dca', 'DCAR_012222' => 'dca', 'DCAR_012223' => 'dca', 'DCAR_012224' => 'dca', 'DCAR_012225' => 'dca', 'DCAR_013416' => 'dca', 'DCAR_018416' => 'dca', 'Dinv08922' => 'din', 'Dinv11244' => 'din', 'Dinv21161' => 'din', 'Dinv21162' => 'din', 'Dinv22812' => 'din', 'Dinv31724' => 'din', 'Dinv32946' => 'din', 'Duzib093G0493' => 'dzi', 'Duzib128G0290' => 'dzi', 'Duzib133G1205' => 'dzi', 'Duzib138G0696' => 'dzi', 'Duzib150G0782' => 'dzi', 'Duzib168G1783' => 'dzi', 'Duzib170G0799' => 'dzi', 'ECA236G2531' => 'eca', 'ECA247G2715' => 'eca', 'ECA248G3330' => 'eca', 'EL10Ac3g06407' => 'bvu', 'EL10Ac7g16846' => 'bvu', 'Eucgr.J00526' => 'egr', 'Eucgr.K03377' => 'egr', 'FAN02G0071' => 'fan', 'FAN05G2004' => 'fan', 'FAN05G3885' => 'fan', 'FAN11G0065' => 'fan', 'FAN14G4181' => 'fan', 'FAN15G0462' => 'fan', 'FAN16G3341' => 'fan', 'FAN20G1604' => 'fan', 'FAN21G2749' => 'fan', 'FAN24G2931' => 'fan', 'FAN25G1416' => 'fan', 'FAN27G1515' => 'fan', 'FvH4_2g23740' => 'fve', 'FvH4_3g25740' => 'fve', 'FvH4_6g19530' => 'fve', 'Glyma.02G148100' => 'gma', 'Glyma.03G152300' => 'gma', 'Glyma.03G198600' => 'gma', 'Glyma.10G025700' => 'gma', 'Glyma.10G075800' => 'gma', 'Glyma.11G181200' => 'gma', 'Glyma.12G186800' => 'gma', 'Glyma.13G314700' => 'gma', 'Glyma.14G223800' => 'gma', 'Glyma.19G154800' => 'gma', 'Glyma.19G196400' => 'gma', 'Gohir.A02G095300' => 'ghi', 'Gohir.A04G059700' => 'ghi', 'Gohir.A05G079300' => 'ghi', 'Gohir.A07G111100' => 'ghi', 'Gohir.A11G121900' => 'ghi', 'Gohir.D03G088200' => 'ghi', 'Gohir.D04G096500' => 'ghi', 'Gohir.D05G082200' => 'ghi', 'Gohir.D07G114900' => 'ghi', 'Gohir.D11G127100' => 'ghi', 'Gorai.001G123100' => 'gra', 'Gorai.003G073700' => 'gra', 'Gorai.007G135800' => 'gra', 'Gorai.009G083800' => 'gra', 'Gorai.009G399200' => 'gra', 'GSVIVG01011119001' => 'vvi', 'HanXRQChr01g0018041' => 'han', 'HanXRQChr02g0034551' => 'han', 'HanXRQChr04g0098931' => 'han', 'HanXRQChr04g0118771' => 'han', 'HanXRQChr04g0123241' => 'han', 'HanXRQChr10g0282771' => 'han', 'HanXRQChr15g0485071' => 'han', 'HanXRQChr15g0485081' => 'han', 'Haze_04727' => 'cav', 'Haze_09214' => 'cav', 'Haze_19656' => 'cav', 'Haze_23343' => 'cav', 'Hma1.2p1_0820F.1_g224090' => 'hma', 'HPP92_009882' => 'vpl', 'HPP92_011809' => 'vpl', 'Lalb_Chr01g0017941' => 'lal', 'Lalb_Chr02g0142801' => 'lal', 'Lalb_Chr02g0154771' => 'lal', 'Lalb_Chr03g0028271' => 'lal', 'Lalb_Chr24g0393471' => 'lal', 'Lalb_Chr24g0393481' => 'lal', 'Lj1A258G36' => 'lonja', 'Lj1A46T42' => 'lonja', 'Lj1g0010769' => 'lja', 'Lj1P258T28' => 'lonja', 'Lj2A969G69' => 'lonja', 'Lj2C969G11' => 'lonja', 'Lj2C969T12' => 'lonja', 'Lj2C971G3' => 'lonja', 'Lj2C971T4' => 'lonja', 'Lj2P144T15' => 'lonja', 'Lj2P151T26' => 'lonja', 'Lj2P969T21' => 'lonja', 'Lj2P969T43' => 'lonja', 'Lj2P970T14' => 'lonja', 'Lj2P970T27' => 'lonja', 'Lj2P970T38' => 'lonja', 'Lj2P970T53' => 'lonja', 'Lj2P970T55' => 'lonja', 'Lj3g0009564' => 'lja', 'Lj3g0017769' => 'lja', 'Lj3g0024723' => 'lja', 'Lj5g0015050' => 'lja', 'Lj5g0021329' => 'lja', 'Lj6P612T10' => 'lonja', 'Lsat_1_v5_gn_1_59920' => 'lsa', 'Lsat_1_v5_gn_1_85820' => 'lsa', 'Lsat_1_v5_gn_1_86140' => 'lsa', 'Lsat_1_v5_gn_1_86180' => 'lsa', 'Lsat_1_v5_gn_1_86240' => 'lsa', 'Lsat_1_v5_gn_3_82201' => 'lsa', 'Lsat_1_v5_gn_6_37100' => 'lsa', 'Lsat_1_v5_gn_8_56220' => 'lsa', 'Lsat_1_v5_gn_9_4061' => 'lsa', 'Lsat_1_v5_gn_9_71981' => 'lsa', 'Lsat_1_v5_gn_9_72200' => 'lsa', 'Lsat_1_v5_gn_9_72220' => 'lsa', 'Lsat_1_v5_gn_9_72840' => 'lsa', 'Lsat_1_v5_gn_9_73000' => 'lsa', 'Lsat_1_v5_gn_9_81961' => 'lsa', 'Manes.01G000434' => 'mes', 'Manes.01G208700' => 'mes', 'Manes.09G051600' => 'mes', 'Manes.11G164500' => 'mes', 'Mapoly0027s0014' => 'mpo', 'MBI01_g41238_MAGBIO' => 'mbi', 'MBI01_g44955_MAGBIO' => 'mbi', 'MBI04_g19008_MAGBIO' => 'mbi', 'MBI17_g40298_MAGBIO' => 'mbi', 'MD03G1150200' => 'mdo', 'MD03G1150400' => 'mdo', 'MD03G1267000' => 'mdo', 'MD11G1169600' => 'mdo', 'MD11G1169800' => 'mdo', 'MD11G1287400' => 'mdo', 'MD12G1031600' => 'mdo', 'MD14G1031900' => 'mdo', 'Medtr1g058490' => 'mtr', 'Medtr1g060460' => 'mtr', 'Medtr1g072360' => 'mtr', 'Medtr2g086920' => 'mtr', 'Medtr3g466280' => 'mtr', 'Medtr3g466300' => 'mtr', 'Medtr3g466330' => 'mtr', 'Medtr3g466350' => 'mtr', 'Medtr4g052460' => 'mtr', 'Medtr5g013660' => 'mtr', 'Medtr7g105320' => 'mtr', 'Medtr8g021080' => 'mtr', 'Medtr8g021090' => 'mtr', 'Medtr8g022730' => 'mtr', 'MELO3C009497.2' => 'cme', 'MELO3C014507.2' => 'cme', 'Migut.D02365' => 'egut', 'Migut.J00998' => 'egut', 'Migut.L01805' => 'egut', 'Migut.N02471' => 'egut', 'MSTRG.17698' => 'ama', 'MSTRG.18773' => 'ama', 'MSTRG.19279' => 'ama', 'MSTRG.21567' => 'ama', 'MSTRG.5867' => 'ama', 'Nitab4.5_0000731g0010' => 'nta', 'Nitab4.5_0001028g0070' => 'nta', 'Nitab4.5_0001933g0130' => 'nta', 'Nitab4.5_0002036g0040' => 'nta', 'Nitab4.5_0008177g0020' => 'nta', 'Nn1g02184' => 'nnu', 'Nn2g14229' => 'nnu', 'Nn6g34804' => 'nnu', 'Oeu015964.1' => 'oeu', 'Oeu022879.1' => 'oeu', 'Oeu047417.1' => 'oeu', 'Oeu047834.1' => 'oeu', 'Oeu051601.1' => 'oeu', 'Oeu058570.1' => 'oeu', 'Os01g0685300' => 'osa', 'Os02g0535901' => 'osa', 'Os04g0414500' => 'osa', 'Os11g0155100' => 'osa', 'Os12g0156500' => 'osa', 'Peaxi162Scf00013g00132' => 'pax', 'Peaxi162Scf00069g00003' => 'pax', 'Peaxi162Scf00096g00826' => 'pax', 'Peaxi162Scf00224g00034' => 'pax', 'Peaxi162Scf00338g00064' => 'pax', 'Peaxi162Scf00345g01028' => 'pax', 'PGR031G2343' => 'pgr', 'PGR044G0094' => 'pgr', 'PGR044G1888' => 'pgr', 'PGR102G1477' => 'pgr', 'PGR119G1239' => 'pgr', 'PGR142G3875' => 'pgr', 'PGSC0003DMG400026346' => 'stu', 'PGSC0003DMG400028160' => 'stu', 'Phvul.001G149900' => 'pvu', 'Phvul.001G192900' => 'pvu', 'Phvul.005G121900' => 'pvu', 'Phvul.007G171100' => 'pvu', 'Phvul.011G096300' => 'pvu', 'Potri.001G452000' => 'ptr', 'Potri.002G054500' => 'ptr', 'Potri.004G199300' => 'ptr', 'Potri.005G208200' => 'ptr', 'Potri.006G208400' => 'ptr', 'Potri.009G160700' => 'ptr', 'Pp3c20_18520' => 'ppa', 'Pp3c23_16130' => 'ppa', 'Pp3c23_3650' => 'ppa', 'Prupe.6G137300' => 'ppe', 'Prupe.7G100900' => 'ppe', 'Prupe.8G242700' => 'ppe', 'Psat3g031200' => 'psa', 'Psat5g260120' => 'psa', 'Psat6g060560' => 'psa', 'Psat7g186440' => 'psa', 'PSO170G3673' => 'pso', 'PSO302G0139' => 'pso', 'PSO339G4685' => 'pso', 'PSO339G5488' => 'pso', 'PSO384G0232' => 'pso', 'PSO801G0103' => 'pso', 'QL01p011805' => 'qlo', 'QL02p027135' => 'qlo', 'QL07p038097' => 'qlo', 'QL08p000221' => 'qlo', 'QL08p000251' => 'qlo', 'QL12p022121' => 'qlo', 'RcHm_v2.0_Chr3g0474871' => 'rch', 'RcHm_v2.0_Chr5g0046101' => 'rch', 'RcHm_v2.0_Chr6g0291231' => 'rch', 'Rhsim01G0203100' => 'rsi', 'Rhsim01G0203200' => 'rsi', 'Rhsim01G0203300' => 'rsi', 'Rhsim01G0203600' => 'rsi', 'Rhsim01G0275400' => 'rsi', 'Rhsim03G0069700' => 'rsi', 'Rhsim13G0195000' => 'rsi', 'Sabra02G0044300' => 'sbr', 'Sabra04G0134400' => 'sbr', 'Sabra05G0158400' => 'sbr', 'Sabra06G0160300' => 'sbr', 'Sabra09G0125700' => 'sbr', 'Sabra16G0305200' => 'sbr', 'SalBow3G2393' => 'sbo', 'SalBow3G4144' => 'sbo', 'SalBow4G1376' => 'sbo', 'SalBow5G5688' => 'sbo', 'SalBow6G5902' => 'sbo', 'Sc02g0000450' => 'sci', 'Sc19g0004440' => 'sci', 'Sed0025213' => 'sed', 'Sed0027957' => 'sed', 'SEGI_09392' => 'sgi', 'SEGI_11383' => 'sgi', 'SEGI_16106' => 'sgi', 'SEGI_17994' => 'sgi', 'SEGI_21889' => 'sgi', 'SEGI_26855' => 'sgi', 'SEGI_27650' => 'sgi', 'SEGI_31567' => 'sgi', 'SEGI_31875' => 'sgi', 'SEGI_32242' => 'sgi', 'SEGI_32330' => 'sgi', 'SEGI_33640' => 'sgi', 'SEGI_40647' => 'sgi', 'SEGI_41552' => 'sgi', 'SGA_v2.0_scaffold13G06693' => 'sas', 'SGA_v2.0_scaffold177G39440' => 'sas', 'SGA_v2.0_scaffold36G14254' => 'sas', 'SGA_v2.0_scaffold7G03997' => 'sas', 'SMO358G0574' => 'smo', 'Solyc09g065020.4' => 'sly', 'Solyc10g083230.1' => 'sly', 'Solyc11g068710.3' => 'sly', 'Sopen09g026750' => 'spe', 'Sopen10g032710' => 'spe', 'Sopen11g027420' => 'spe', 'Sp4g10120' => 'spa', 'Sp4g18320' => 'spa', 'Sp5g16910' => 'spa', 'TAR362G0290' => 'tar', 'TAR623G1074' => 'tar', 'TAR633G1115' => 'tar', 'TAR633G1388' => 'tar', 'TAR636G0436' => 'tar', 'TAR636G1412' => 'tar', 'THA.LOC104799555' => 'tha', 'THA.LOC104800515' => 'tha', 'THA.LOC104817554' => 'tha', 'THA.LOC104820728' => 'tha', 'THA.LOC104826437' => 'tha', 'Thecc.01G281400' => 'tca', 'Thecc.03G216100' => 'tca', 'Thecc.05G096200' => 'tca', 'Thecc.09G278000' => 'tca', 'Thecc.09G278100' => 'tca', 'Thhalv10002035m.g' => 'esa', 'Thhalv10016952m.g' => 'esa', 'TPR.G11608' => 'tpr', 'TPR.G15178' => 'tpr', 'TPR.G1585' => 'tpr', 'TPR.G16659' => 'tpr', 'TPR.G16662' => 'tpr', 'TPR.G16673' => 'tpr', 'TPR.G17223' => 'tpr', 'TPR.G23325' => 'tpr', 'TPR.G27006' => 'tpr', 'TPR.G32758' => 'tpr', 'TPR.G36506' => 'tpr', 'TPR.G39610' => 'tpr', 'TPR.G4529' => 'tpr', 'TWI09G0769' => 'twi', 'TWI23G1064' => 'twi', 'TWI39G0306' => 'twi', 'TWI39G0321' => 'twi', 'TWI39G0995' => 'twi', 'TWI53G0879' => 'twi', 'TWI63G0398' => 'twi', 'TWI79G0358' => 'twi', 'TWI79G1506' => 'twi', 'unitig_26.g10153' => 'ugi', 'unitig_26.g9258' => 'ugi', 'unitig_749.g13742' => 'ugi', 'unitig_8.g3660' => 'ugi', 'unitig_899.g15375' => 'ugi', 'VMungo0720G2940' => 'vmu', 'VMungo1080G0702' => 'vmu', 'VMungo1127G0911' => 'vmu', 'VMungo1383G0438' => 'vmu', 'VMungo1383G1863' => 'vmu', 'Zm00001eb017340' => 'zma', 'Zm00001eb083710' => 'zma', 'Zm00001eb197220' => 'zma', 'Zm00001eb197260' => 'zma', 'Zm00001eb242900' => 'zma', 'Zm00001eb421990' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001305' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001305' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001305' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001305' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151