Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001292', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '485', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04700' => 'bna', 'A02p26940' => 'bna', 'A06p06410' => 'bna', 'A06p07320' => 'bna', 'A06p07350' => 'bna', 'A08p34390' => 'bna', 'A09p17630' => 'bna', 'Aa31LG1G4360' => 'aar', 'Aa31LG1G5260' => 'aar', 'Aa31LG2G10070' => 'aar', 'Aa31LG2G10100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.75' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2545' => 'aag', 'Actinidia00305' => 'ach', 'Actinidia01160' => 'ach', 'Actinidia13513' => 'ach', 'Actinidia15043' => 'ach', 'Actinidia19631' => 'ach', 'Actinidia29624' => 'ach', 'Ah.02g129890' => 'amhyb', 'Ah.02g129900' => 'amhyb', 'Ah.03g132660' => 'amhyb', 'Ah.05g170840' => 'amhyb', 'AL1G20280' => 'aly', 'AL1G21390' => 'aly', 'AL2G16440' => 'aly', 'AL7G17890' => 'aly', 'Aqoxy3G02988' => 'aox', 'Aqoxy5G04000' => 'aox', 'Aqoxy6G00877' => 'aox', 'arahy.Tifrunner.gnm1.ann1.31UHS4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V6D2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72ZBT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK27YN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4Q9CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYF69H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAFC77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95VYD' => 'arhy', 'AT1G09730' => 'ath', 'AT1G10570' => 'ath', 'AT1G60220' => 'ath', 'AT2G10625' => 'ath', 'AT4G33620' => 'ath', 'ATR0730G146' => 'atr', 'ATR0767G167' => 'atr', 'ATR0824G075' => 'atr', 'Atru.chr11.2015' => 'acertr', 'Atru.chr13.1015' => 'acertr', 'Atru.chr13.1016' => 'acertr', 'Atru.chr6.1255' => 'acertr', 'AUR62005372' => 'cqu', 'AUR62014034' => 'cqu', 'AUR62019044' => 'cqu', 'AUR62027883' => 'cqu', 'AUR62027884' => 'cqu', 'BcaB07g31205' => 'bca', 'BcaC02g09016' => 'bca', 'BcaC02g09020' => 'bca', 'BcaC04g22220' => 'bca', 'BcaC05g24868' => 'bca', 'BcaC05g24936' => 'bca', 'BcaC09g52173' => 'bca', 'BcaNung06983' => 'bca', 'BcaNung06984' => 'bca', 'BolC1t00491H' => 'bol', 'BolC4t25507H' => 'bol', 'BolC4t25531H' => 'bol', 'BolC5t29532H' => 'bol', 'BolC5t29630H' => 'bol', 'BolC5t29631H' => 'bol', 'BolC8t48942H' => 'bol', 'BolC9t55101H' => 'bol', 'BraA01t00453Z' => 'bra', 'BraA02t07707Z' => 'bra', 'BraA06t23852Z' => 'bra', 'BraA06t23937Z' => 'bra', 'BraA08t35351Z' => 'bra', 'BraA09t37393Z' => 'bra', 'C01p05090' => 'bna', 'C04p39420' => 'bna', 'C04p39640' => 'bna', 'C05p07810' => 'bna', 'C05p08830' => 'bna', 'C08p13140' => 'bna', 'C09p21960' => 'bna', 'CAN.G376.11' => 'can', 'CAN.G523.11' => 'can', 'CAN.G60.9' => 'can', 'CAN.G61.18' => 'can', 'CANSAT01G2663' => 'cansat', 'CANSAT25G2063' => 'cansat', 'CANSAT54G0160' => 'cansat', 'CARHR009700' => 'chi', 'CARHR010730' => 'chi', 'CARHR052740' => 'chi', 'CARHR056550' => 'chi', 'CARHR221040' => 'chi', 'CARHR241710' => 'chi', 'Carub.0001s0907' => 'cru', 'Carub.0001s1001' => 'cru', 'Carub.0002s0503' => 'cru', 'Carub.0007s0682' => 'cru', 'Ca_00162_v3' => 'car', 'Ca_11800_v3' => 'car', 'Ca_16000_v3' => 'car', 'Ca_22729_v3' => 'car', 'Ca_30959_v3' => 'car', 'CBR_g17607' => 'cbr', 'CBR_g31692' => 'cbr', 'CBR_g324' => 'cbr', 'Cc00_g07670' => 'ccan', 'Cc02_g20940' => 'ccan', 'Cc11_g14630' => 'ccan', 'CDE01G0247' => 'cde', 'CDE01G0387' => 'cde', 'CDE02G3610' => 'cde', 'CDE04G0851' => 'cde', 'CDE04G1081' => 'cde', 'CDE04G3345' => 'cde', 'CDE06G2008' => 'cde', 'Cfa009140' => 'cfa', 'Cfa013790' => 'cfa', 'Cfa013791' => 'cfa', 'Ciclev10000201m.g' => 'ccl', 'Ciclev10029286m.g' => 'ccl', 'Ciclev10031081m.g' => 'ccl', 'CiPaw.05G150600' => 'cil', 'CiPaw.07G165900' => 'cil', 'CiPaw.08G055500' => 'cil', 'ClCG05G025290' => 'cla', 'ClCG08G011690' => 'cla', 'ClCG09G016070' => 'cla', 'COL.COLO4_32386' => 'col', 'COL.COLO4_35242' => 'col', 'COL.COLO4_36969' => 'col', 'Cpa.g.sc21.12' => 'cpa', 'Cpa.g.sc21.13' => 'cpa', 'Cpa.g.sc42.3' => 'cpa', 'Cpa.g.sc42.5' => 'cpa', 'Cpa.g.sc69.20' => 'cpa', 'Cpa.g.sc69.25' => 'cpa', 'Cre06.g278197' => 'cre', 'CsaV3_2G030290' => 'csa', 'CsaV3_5G031600' => 'csa', 'CsaV3_7G006900' => 'csa', 'CSS0010703' => 'camsi', 'CSS0024382' => 'camsi', 'CSS0029667' => 'camsi', 'CSS0039925' => 'camsi', 'CSS0046510' => 'camsi', 'CSS0049204' => 'camsi', 'DCAR_007092' => 'dca', 'DCAR_009562' => 'dca', 'DCAR_009563' => 'dca', 'DCAR_009566' => 'dca', 'DCAR_012858' => 'dca', 'DCAR_018007' => 'dca', 'DCAR_021913' => 'dca', 'DCAR_021914' => 'dca', 'Dinv15305' => 'din', 'Dinv15996' => 'din', 'Dinv24863' => 'din', 'Dinv44858' => 'din', 'Duzib052G0393' => 'dzi', 'Duzib248G0868' => 'dzi', 'Duzib248G1000' => 'dzi', 'ECA232G4048' => 'eca', 'ECA232G4484' => 'eca', 'ECA233G2320' => 'eca', 'ECA234G2749' => 'eca', 'ECA246G0922' => 'eca', 'ECA246G3273' => 'eca', 'EL10Ac1g01055' => 'bvu', 'EL10Ac6g13669' => 'bvu', 'Eucgr.F02147' => 'egr', 'Eucgr.H02612' => 'egr', 'FAN04G0518' => 'fan', 'FAN07G2035' => 'fan', 'FAN08G0616' => 'fan', 'FAN12G1507' => 'fan', 'FAN13G3173' => 'fan', 'FAN15G0696' => 'fan', 'FAN17G1642' => 'fan', 'FAN18G2083' => 'fan', 'FAN20G2933' => 'fan', 'FAN22G1387' => 'fan', 'FAN24G0423' => 'fan', 'FvH4_2g11700' => 'fve', 'FvH4_3g25421' => 'fve', 'FvH4_4g34560' => 'fve', 'FvH4_5g35390' => 'fve', 'Glyma.02G214000' => 'gma', 'Glyma.02G214100' => 'gma', 'Glyma.04G093800' => 'gma', 'Glyma.06G095600' => 'gma', 'Glyma.08G287700' => 'gma', 'Glyma.08G287800' => 'gma', 'Glyma.12G161850' => 'gma', 'Glyma.13G256800' => 'gma', 'Glyma.15G058100' => 'gma', 'Glyma.18G137700' => 'gma', 'Glyma.18G280300' => 'gma', 'Glyma.18G281500' => 'gma', 'Glyma.18G281600' => 'gma', 'Glyma.18G281700' => 'gma', 'Gohir.A01G132400' => 'ghi', 'Gohir.A03G177400' => 'ghi', 'Gohir.A04G115400' => 'ghi', 'Gohir.A04G135200' => 'ghi', 'Gohir.A05G219700' => 'ghi', 'Gohir.D01G117200' => 'ghi', 'Gohir.D02G201100' => 'ghi', 'Gohir.D04G156900' => 'ghi', 'Gohir.D04G178300' => 'ghi', 'Gohir.D05G222200' => 'ghi', 'Gorai.002G142500' => 'gra', 'Gorai.005G225700' => 'gra', 'Gorai.009G229600' => 'gra', 'Gorai.012G143900' => 'gra', 'Gorai.012G171400' => 'gra', 'GSVIVG01009172001' => 'vvi', 'GSVIVG01009173001' => 'vvi', 'GSVIVG01020234001' => 'vvi', 'GSVIVG01020235001' => 'vvi', 'HanXRQChr03g0063601' => 'han', 'HanXRQChr03g0065741' => 'han', 'HanXRQChr05g0157911' => 'han', 'HanXRQChr05g0163371' => 'han', 'HanXRQChr10g0289961' => 'han', 'HanXRQChr12g0368581' => 'han', 'HanXRQChr15g0484871' => 'han', 'HanXRQChr15g0490121' => 'han', 'Haze_12172' => 'cav', 'Haze_22451' => 'cav', 'Hma1.2p1_0010F.1_g006660' => 'hma', 'Hma1.2p1_0125F.1_g058890' => 'hma', 'HPP92_006224' => 'vpl', 'HPP92_008297' => 'vpl', 'HPP92_008298' => 'vpl', 'HPP92_020276' => 'vpl', 'HPP92_024212' => 'vpl', 'HPP92_027860' => 'vpl', 'Hund16858' => 'sun', 'Hund25343' => 'sun', 'Hund27020' => 'sun', 'Hund27770' => 'sun', 'Hund27774' => 'sun', 'Lalb_Chr08g0242481' => 'lal', 'Lalb_Chr09g0335011' => 'lal', 'Lalb_Chr11g0065021' => 'lal', 'Lalb_Chr18g0060411' => 'lal', 'Lj1g0015973' => 'lja', 'Lj4A718G40' => 'lonja', 'Lj4A737G51' => 'lonja', 'Lj4g0026951' => 'lja', 'Lj5A230G42' => 'lonja', 'Lj5A230G43' => 'lonja', 'Lj5A230T38' => 'lonja', 'Lj6g0027662' => 'lja', 'LjContig00408g0003702' => 'lja', 'Lsat_1_v5_gn_1_8661' => 'lsa', 'Lsat_1_v5_gn_1_98460' => 'lsa', 'Lsat_1_v5_gn_2_62680' => 'lsa', 'Lsat_1_v5_gn_3_45040' => 'lsa', 'Lsat_1_v5_gn_3_48100' => 'lsa', 'Lsat_1_v5_gn_3_95181' => 'lsa', 'Lsat_1_v5_gn_4_183321' => 'lsa', 'Lsat_1_v5_gn_5_109800' => 'lsa', 'Lsat_1_v5_gn_6_105041' => 'lsa', 'Lsat_1_v5_gn_6_56301' => 'lsa', 'Lsat_1_v5_gn_7_76281' => 'lsa', 'Lsat_1_v5_gn_8_157321' => 'lsa', 'Lsat_1_v5_gn_9_75061' => 'lsa', 'Lsat_1_v5_gn_9_77261' => 'lsa', 'Lsat_1_v5_gn_9_81600' => 'lsa', 'Manes.02G145000' => 'mes', 'Manes.07G038300' => 'mes', 'Manes.10G098700' => 'mes', 'Manes.12G029500' => 'mes', 'Manes.13G030900' => 'mes', 'Manes.18G059001' => 'mes', 'Mapoly0025s0054' => 'mpo', 'MBI01_g24502_MAGBIO' => 'mbi', 'MBI01_g42165_MAGBIO' => 'mbi', 'MBI02_g05218_MAGBIO' => 'mbi', 'MBI02_g18696_MAGBIO' => 'mbi', 'MBI02_g18697_MAGBIO' => 'mbi', 'MBI02_g18698_MAGBIO' => 'mbi', 'MBI02_g25595_MAGBIO' => 'mbi', 'MBI07_g34624_MAGBIO' => 'mbi', 'MBI16_g27584_MAGBIO' => 'mbi', 'MBI16_g36056_MAGBIO' => 'mbi', 'MBI18_g28166_MAGBIO' => 'mbi', 'MD08G1197400' => 'mdo', 'MD13G1091500' => 'mdo', 'MD15G1385000' => 'mdo', 'Medtr2g009580' => 'mtr', 'Medtr3g100390' => 'mtr', 'Medtr5g066230' => 'mtr', 'Medtr5g066240' => 'mtr', 'Medtr5g066530' => 'mtr', 'Medtr8g064370' => 'mtr', 'Medtr8g064470' => 'mtr', 'MELO3C011091.2' => 'cme', 'MELO3C012000.2' => 'cme', 'MELO3C018604.2' => 'cme', 'Migut.B00556' => 'egut', 'Migut.D01607' => 'egut', 'Migut.L01018' => 'egut', 'Migut.L01409' => 'egut', 'Migut.N02858' => 'egut', 'MSTRG.22177' => 'ama', 'MSTRG.24428' => 'ama', 'MSTRG.597' => 'ama', 'MSTRG.7894' => 'ama', 'Nitab4.5_0000034g0260' => 'nta', 'Nitab4.5_0000034g0270' => 'nta', 'Nitab4.5_0000113g0260' => 'nta', 'Nitab4.5_0000159g0110' => 'nta', 'Nitab4.5_0000531g0050' => 'nta', 'Nitab4.5_0000706g0010' => 'nta', 'Nitab4.5_0001026g0030' => 'nta', 'Nitab4.5_0001026g0040' => 'nta', 'Nitab4.5_0002579g0090' => 'nta', 'Nitab4.5_0004636g0020' => 'nta', 'Nn1g05565' => 'nnu', 'Nn4g22805' => 'nnu', 'Nn5g29887' => 'nnu', 'Oeu010529.1' => 'oeu', 'Oeu024827.1' => 'oeu', 'Oeu025935.3' => 'oeu', 'Oeu029680.1' => 'oeu', 'Oeu032041.1' => 'oeu', 'Oeu034571.1' => 'oeu', 'Oeu034572.1' => 'oeu', 'Oeu041818.1' => 'oeu', 'Oeu056395.2' => 'oeu', 'Os01g0738100' => 'osa', 'Os05g0207900' => 'osa', 'Os06g0487900' => 'osa', 'Os12g0606900' => 'osa', 'Peaxi162Scf00299g00715' => 'pax', 'Peaxi162Scf00299g00720' => 'pax', 'Peaxi162Scf00338g00116' => 'pax', 'Peaxi162Scf00495g00216' => 'pax', 'PGR031G1992' => 'pgr', 'PGR119G2170' => 'pgr', 'PGSC0003DMG400006817' => 'stu', 'PGSC0003DMG400023378' => 'stu', 'PGSC0003DMG400030989' => 'stu', 'PGSC0003DMG400033572' => 'stu', 'PGSC0003DMG401009214' => 'stu', 'PGSC0003DMG402009214' => 'stu', 'PGSC0003DMG402009344' => 'stu', 'Phvul.003G052200' => 'pvu', 'Phvul.006G202100' => 'pvu', 'Phvul.009G037600' => 'pvu', 'Potri.002G105700' => 'ptr', 'Potri.005G155600' => 'ptr', 'Potri.007G115400' => 'ptr', 'Potri.010G040600' => 'ptr', 'Potri.017G044000' => 'ptr', 'Pp3c15_7620' => 'ppa', 'Pp3c17_2400' => 'ppa', 'Pp3c25_3200' => 'ppa', 'Pp3c25_7310' => 'ppa', 'Pp3c5_19870' => 'ppa', 'Pp3c9_4420' => 'ppa', 'Pp3c9_9780' => 'ppa', 'Pp3c9_9860' => 'ppa', 'PRCOL_00000994' => 'pco', 'Prupe.1G254600' => 'ppe', 'Prupe.6G149300' => 'ppe', 'Prupe.8G069500' => 'ppe', 'Psat0s1668g0040' => 'psa', 'Psat1g095800' => 'psa', 'Psat1g215560' => 'psa', 'Psat2g064720' => 'psa', 'Psat4g125280' => 'psa', 'Psat5g046880' => 'psa', 'PSO063G2616' => 'pso', 'PSO063G4088' => 'pso', 'PSO170G5589' => 'pso', 'PSO210G3238' => 'pso', 'PSO541G4975' => 'pso', 'PSO675G2554' => 'pso', 'PSO832G2131' => 'pso', 'QL01p018445' => 'qlo', 'QL03p061415' => 'qlo', 'QL09p017743' => 'qlo', 'RcHm_v2.0_Chr3g0455541' => 'rch', 'RcHm_v2.0_Chr4g0443941' => 'rch', 'RcHm_v2.0_Chr6g0271021' => 'rch', 'RcHm_v2.0_Chr7g0236781' => 'rch', 'Rhsim07G0211800' => 'rsi', 'Rhsim12G0121000' => 'rsi', 'Sabra02G0083000' => 'sbr', 'Sabra07G0094200' => 'sbr', 'Sabra10G0026500' => 'sbr', 'Sabra17G0029900' => 'sbr', 'Sc01g0001150' => 'sci', 'Sc11g0001210' => 'sci', 'Sed0002698' => 'sed', 'Sed0011755' => 'sed', 'Sed0021630' => 'sed', 'Sed0022127' => 'sed', 'SEGI_02443' => 'sgi', 'SEGI_12549' => 'sgi', 'SEGI_13379' => 'sgi', 'SEGI_20117' => 'sgi', 'SEGI_23287' => 'sgi', 'SEGI_36476' => 'sgi', 'SGA_v2.0_scaffold165G38250' => 'sas', 'SGA_v2.0_scaffold48G17832' => 'sas', 'SGA_v2.0_scaffold83G26374' => 'sas', 'SGA_v2.0_scaffold8G04226' => 'sas', 'SGA_v2.0_scaffold8G04227' => 'sas', 'SHI27221' => 'shi', 'SMO347G0330' => 'smo', 'SMO361G0085' => 'smo', 'SMO367G0188' => 'smo', 'Solyc01g105820.3' => 'sly', 'Solyc04g026200.3' => 'sly', 'Solyc04g026220.4' => 'sly', 'Solyc05g005630.4' => 'sly', 'Solyc11g017040.2' => 'sly', 'Solyc11g017060.2' => 'sly', 'Sopen00g006460' => 'spe', 'Sopen01g048280' => 'spe', 'Sopen04g014190' => 'spe', 'Sopen04g014200' => 'spe', 'Sopen04g014280' => 'spe', 'Sopen05g001630' => 'spe', 'Sopen11g009030' => 'spe', 'Sopen11g009050' => 'spe', 'Sp1g08320' => 'spa', 'Sp1g09220' => 'spa', 'Sp2g04460' => 'spa', 'Sp7g31340' => 'spa', 'SpUn0106_0010' => 'spa', 'TAR374G1183' => 'tar', 'TAR381G0500' => 'tar', 'TAR381G1516' => 'tar', 'TAR625G0946' => 'tar', 'THA.LOC104807180' => 'tha', 'THA.LOC104816798' => 'tha', 'THA.LOC104820191' => 'tha', 'THA.LOC104823662' => 'tha', 'Thecc.02G129400' => 'tca', 'Thecc.02G248100' => 'tca', 'Thecc.08G070600' => 'tca', 'Thhalv10006645m.g' => 'esa', 'Thhalv10007260m.g' => 'esa', 'Thhalv10023376m.g' => 'esa', 'Thhalv10024447m.g' => 'esa', 'TPR.G12734' => 'tpr', 'TPR.G13778' => 'tpr', 'TPR.G32100' => 'tpr', 'TPR.G34572' => 'tpr', 'TPR.G36050' => 'tpr', 'TPR.G39555' => 'tpr', 'TPR.G6330' => 'tpr', 'TPR.G6333' => 'tpr', 'TPR.G9503' => 'tpr', 'TWI12G0821' => 'twi', 'TWI18G1467' => 'twi', 'TWI56G0043' => 'twi', 'TWI59G0076' => 'twi', 'unitig_26.g10341' => 'ugi', 'unitig_744.g24188' => 'ugi', 'unitig_8.g4849' => 'ugi', 'unitig_8.g4850' => 'ugi', 'vmacro04653' => 'vma', 'vmacro04654' => 'vma', 'vmacro16254' => 'vma', 'VMungo0251G2116' => 'vmu', 'VMungo0540G0648' => 'vmu', 'VMungo1309G1057' => 'vmu', 'Zm00001eb031350' => 'zma', 'Zm00001eb153850' => 'zma', 'Zm00001eb208510' => 'zma', 'Zm00001eb367170' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001292', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001292' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001292', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '485', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001292' ) ), 'genes' => array( 'A01p04700' => 'bna', 'A02p26940' => 'bna', 'A06p06410' => 'bna', 'A06p07320' => 'bna', 'A06p07350' => 'bna', 'A08p34390' => 'bna', 'A09p17630' => 'bna', 'Aa31LG1G4360' => 'aar', 'Aa31LG1G5260' => 'aar', 'Aa31LG2G10070' => 'aar', 'Aa31LG2G10100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.75' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2545' => 'aag', 'Actinidia00305' => 'ach', 'Actinidia01160' => 'ach', 'Actinidia13513' => 'ach', 'Actinidia15043' => 'ach', 'Actinidia19631' => 'ach', 'Actinidia29624' => 'ach', 'Ah.02g129890' => 'amhyb', 'Ah.02g129900' => 'amhyb', 'Ah.03g132660' => 'amhyb', 'Ah.05g170840' => 'amhyb', 'AL1G20280' => 'aly', 'AL1G21390' => 'aly', 'AL2G16440' => 'aly', 'AL7G17890' => 'aly', 'Aqoxy3G02988' => 'aox', 'Aqoxy5G04000' => 'aox', 'Aqoxy6G00877' => 'aox', 'arahy.Tifrunner.gnm1.ann1.31UHS4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V6D2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72ZBT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK27YN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4Q9CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYF69H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAFC77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95VYD' => 'arhy', 'AT1G09730' => 'ath', 'AT1G10570' => 'ath', 'AT1G60220' => 'ath', 'AT2G10625' => 'ath', 'AT4G33620' => 'ath', 'ATR0730G146' => 'atr', 'ATR0767G167' => 'atr', 'ATR0824G075' => 'atr', 'Atru.chr11.2015' => 'acertr', 'Atru.chr13.1015' => 'acertr', 'Atru.chr13.1016' => 'acertr', 'Atru.chr6.1255' => 'acertr', 'AUR62005372' => 'cqu', 'AUR62014034' => 'cqu', 'AUR62019044' => 'cqu', 'AUR62027883' => 'cqu', 'AUR62027884' => 'cqu', 'BcaB07g31205' => 'bca', 'BcaC02g09016' => 'bca', 'BcaC02g09020' => 'bca', 'BcaC04g22220' => 'bca', 'BcaC05g24868' => 'bca', 'BcaC05g24936' => 'bca', 'BcaC09g52173' => 'bca', 'BcaNung06983' => 'bca', 'BcaNung06984' => 'bca', 'BolC1t00491H' => 'bol', 'BolC4t25507H' => 'bol', 'BolC4t25531H' => 'bol', 'BolC5t29532H' => 'bol', 'BolC5t29630H' => 'bol', 'BolC5t29631H' => 'bol', 'BolC8t48942H' => 'bol', 'BolC9t55101H' => 'bol', 'BraA01t00453Z' => 'bra', 'BraA02t07707Z' => 'bra', 'BraA06t23852Z' => 'bra', 'BraA06t23937Z' => 'bra', 'BraA08t35351Z' => 'bra', 'BraA09t37393Z' => 'bra', 'C01p05090' => 'bna', 'C04p39420' => 'bna', 'C04p39640' => 'bna', 'C05p07810' => 'bna', 'C05p08830' => 'bna', 'C08p13140' => 'bna', 'C09p21960' => 'bna', 'CAN.G376.11' => 'can', 'CAN.G523.11' => 'can', 'CAN.G60.9' => 'can', 'CAN.G61.18' => 'can', 'CANSAT01G2663' => 'cansat', 'CANSAT25G2063' => 'cansat', 'CANSAT54G0160' => 'cansat', 'CARHR009700' => 'chi', 'CARHR010730' => 'chi', 'CARHR052740' => 'chi', 'CARHR056550' => 'chi', 'CARHR221040' => 'chi', 'CARHR241710' => 'chi', 'Carub.0001s0907' => 'cru', 'Carub.0001s1001' => 'cru', 'Carub.0002s0503' => 'cru', 'Carub.0007s0682' => 'cru', 'Ca_00162_v3' => 'car', 'Ca_11800_v3' => 'car', 'Ca_16000_v3' => 'car', 'Ca_22729_v3' => 'car', 'Ca_30959_v3' => 'car', 'CBR_g17607' => 'cbr', 'CBR_g31692' => 'cbr', 'CBR_g324' => 'cbr', 'Cc00_g07670' => 'ccan', 'Cc02_g20940' => 'ccan', 'Cc11_g14630' => 'ccan', 'CDE01G0247' => 'cde', 'CDE01G0387' => 'cde', 'CDE02G3610' => 'cde', 'CDE04G0851' => 'cde', 'CDE04G1081' => 'cde', 'CDE04G3345' => 'cde', 'CDE06G2008' => 'cde', 'Cfa009140' => 'cfa', 'Cfa013790' => 'cfa', 'Cfa013791' => 'cfa', 'Ciclev10000201m.g' => 'ccl', 'Ciclev10029286m.g' => 'ccl', 'Ciclev10031081m.g' => 'ccl', 'CiPaw.05G150600' => 'cil', 'CiPaw.07G165900' => 'cil', 'CiPaw.08G055500' => 'cil', 'ClCG05G025290' => 'cla', 'ClCG08G011690' => 'cla', 'ClCG09G016070' => 'cla', 'COL.COLO4_32386' => 'col', 'COL.COLO4_35242' => 'col', 'COL.COLO4_36969' => 'col', 'Cpa.g.sc21.12' => 'cpa', 'Cpa.g.sc21.13' => 'cpa', 'Cpa.g.sc42.3' => 'cpa', 'Cpa.g.sc42.5' => 'cpa', 'Cpa.g.sc69.20' => 'cpa', 'Cpa.g.sc69.25' => 'cpa', 'Cre06.g278197' => 'cre', 'CsaV3_2G030290' => 'csa', 'CsaV3_5G031600' => 'csa', 'CsaV3_7G006900' => 'csa', 'CSS0010703' => 'camsi', 'CSS0024382' => 'camsi', 'CSS0029667' => 'camsi', 'CSS0039925' => 'camsi', 'CSS0046510' => 'camsi', 'CSS0049204' => 'camsi', 'DCAR_007092' => 'dca', 'DCAR_009562' => 'dca', 'DCAR_009563' => 'dca', 'DCAR_009566' => 'dca', 'DCAR_012858' => 'dca', 'DCAR_018007' => 'dca', 'DCAR_021913' => 'dca', 'DCAR_021914' => 'dca', 'Dinv15305' => 'din', 'Dinv15996' => 'din', 'Dinv24863' => 'din', 'Dinv44858' => 'din', 'Duzib052G0393' => 'dzi', 'Duzib248G0868' => 'dzi', 'Duzib248G1000' => 'dzi', 'ECA232G4048' => 'eca', 'ECA232G4484' => 'eca', 'ECA233G2320' => 'eca', 'ECA234G2749' => 'eca', 'ECA246G0922' => 'eca', 'ECA246G3273' => 'eca', 'EL10Ac1g01055' => 'bvu', 'EL10Ac6g13669' => 'bvu', 'Eucgr.F02147' => 'egr', 'Eucgr.H02612' => 'egr', 'FAN04G0518' => 'fan', 'FAN07G2035' => 'fan', 'FAN08G0616' => 'fan', 'FAN12G1507' => 'fan', 'FAN13G3173' => 'fan', 'FAN15G0696' => 'fan', 'FAN17G1642' => 'fan', 'FAN18G2083' => 'fan', 'FAN20G2933' => 'fan', 'FAN22G1387' => 'fan', 'FAN24G0423' => 'fan', 'FvH4_2g11700' => 'fve', 'FvH4_3g25421' => 'fve', 'FvH4_4g34560' => 'fve', 'FvH4_5g35390' => 'fve', 'Glyma.02G214000' => 'gma', 'Glyma.02G214100' => 'gma', 'Glyma.04G093800' => 'gma', 'Glyma.06G095600' => 'gma', 'Glyma.08G287700' => 'gma', 'Glyma.08G287800' => 'gma', 'Glyma.12G161850' => 'gma', 'Glyma.13G256800' => 'gma', 'Glyma.15G058100' => 'gma', 'Glyma.18G137700' => 'gma', 'Glyma.18G280300' => 'gma', 'Glyma.18G281500' => 'gma', 'Glyma.18G281600' => 'gma', 'Glyma.18G281700' => 'gma', 'Gohir.A01G132400' => 'ghi', 'Gohir.A03G177400' => 'ghi', 'Gohir.A04G115400' => 'ghi', 'Gohir.A04G135200' => 'ghi', 'Gohir.A05G219700' => 'ghi', 'Gohir.D01G117200' => 'ghi', 'Gohir.D02G201100' => 'ghi', 'Gohir.D04G156900' => 'ghi', 'Gohir.D04G178300' => 'ghi', 'Gohir.D05G222200' => 'ghi', 'Gorai.002G142500' => 'gra', 'Gorai.005G225700' => 'gra', 'Gorai.009G229600' => 'gra', 'Gorai.012G143900' => 'gra', 'Gorai.012G171400' => 'gra', 'GSVIVG01009172001' => 'vvi', 'GSVIVG01009173001' => 'vvi', 'GSVIVG01020234001' => 'vvi', 'GSVIVG01020235001' => 'vvi', 'HanXRQChr03g0063601' => 'han', 'HanXRQChr03g0065741' => 'han', 'HanXRQChr05g0157911' => 'han', 'HanXRQChr05g0163371' => 'han', 'HanXRQChr10g0289961' => 'han', 'HanXRQChr12g0368581' => 'han', 'HanXRQChr15g0484871' => 'han', 'HanXRQChr15g0490121' => 'han', 'Haze_12172' => 'cav', 'Haze_22451' => 'cav', 'Hma1.2p1_0010F.1_g006660' => 'hma', 'Hma1.2p1_0125F.1_g058890' => 'hma', 'HPP92_006224' => 'vpl', 'HPP92_008297' => 'vpl', 'HPP92_008298' => 'vpl', 'HPP92_020276' => 'vpl', 'HPP92_024212' => 'vpl', 'HPP92_027860' => 'vpl', 'Hund16858' => 'sun', 'Hund25343' => 'sun', 'Hund27020' => 'sun', 'Hund27770' => 'sun', 'Hund27774' => 'sun', 'Lalb_Chr08g0242481' => 'lal', 'Lalb_Chr09g0335011' => 'lal', 'Lalb_Chr11g0065021' => 'lal', 'Lalb_Chr18g0060411' => 'lal', 'Lj1g0015973' => 'lja', 'Lj4A718G40' => 'lonja', 'Lj4A737G51' => 'lonja', 'Lj4g0026951' => 'lja', 'Lj5A230G42' => 'lonja', 'Lj5A230G43' => 'lonja', 'Lj5A230T38' => 'lonja', 'Lj6g0027662' => 'lja', 'LjContig00408g0003702' => 'lja', 'Lsat_1_v5_gn_1_8661' => 'lsa', 'Lsat_1_v5_gn_1_98460' => 'lsa', 'Lsat_1_v5_gn_2_62680' => 'lsa', 'Lsat_1_v5_gn_3_45040' => 'lsa', 'Lsat_1_v5_gn_3_48100' => 'lsa', 'Lsat_1_v5_gn_3_95181' => 'lsa', 'Lsat_1_v5_gn_4_183321' => 'lsa', 'Lsat_1_v5_gn_5_109800' => 'lsa', 'Lsat_1_v5_gn_6_105041' => 'lsa', 'Lsat_1_v5_gn_6_56301' => 'lsa', 'Lsat_1_v5_gn_7_76281' => 'lsa', 'Lsat_1_v5_gn_8_157321' => 'lsa', 'Lsat_1_v5_gn_9_75061' => 'lsa', 'Lsat_1_v5_gn_9_77261' => 'lsa', 'Lsat_1_v5_gn_9_81600' => 'lsa', 'Manes.02G145000' => 'mes', 'Manes.07G038300' => 'mes', 'Manes.10G098700' => 'mes', 'Manes.12G029500' => 'mes', 'Manes.13G030900' => 'mes', 'Manes.18G059001' => 'mes', 'Mapoly0025s0054' => 'mpo', 'MBI01_g24502_MAGBIO' => 'mbi', 'MBI01_g42165_MAGBIO' => 'mbi', 'MBI02_g05218_MAGBIO' => 'mbi', 'MBI02_g18696_MAGBIO' => 'mbi', 'MBI02_g18697_MAGBIO' => 'mbi', 'MBI02_g18698_MAGBIO' => 'mbi', 'MBI02_g25595_MAGBIO' => 'mbi', 'MBI07_g34624_MAGBIO' => 'mbi', 'MBI16_g27584_MAGBIO' => 'mbi', 'MBI16_g36056_MAGBIO' => 'mbi', 'MBI18_g28166_MAGBIO' => 'mbi', 'MD08G1197400' => 'mdo', 'MD13G1091500' => 'mdo', 'MD15G1385000' => 'mdo', 'Medtr2g009580' => 'mtr', 'Medtr3g100390' => 'mtr', 'Medtr5g066230' => 'mtr', 'Medtr5g066240' => 'mtr', 'Medtr5g066530' => 'mtr', 'Medtr8g064370' => 'mtr', 'Medtr8g064470' => 'mtr', 'MELO3C011091.2' => 'cme', 'MELO3C012000.2' => 'cme', 'MELO3C018604.2' => 'cme', 'Migut.B00556' => 'egut', 'Migut.D01607' => 'egut', 'Migut.L01018' => 'egut', 'Migut.L01409' => 'egut', 'Migut.N02858' => 'egut', 'MSTRG.22177' => 'ama', 'MSTRG.24428' => 'ama', 'MSTRG.597' => 'ama', 'MSTRG.7894' => 'ama', 'Nitab4.5_0000034g0260' => 'nta', 'Nitab4.5_0000034g0270' => 'nta', 'Nitab4.5_0000113g0260' => 'nta', 'Nitab4.5_0000159g0110' => 'nta', 'Nitab4.5_0000531g0050' => 'nta', 'Nitab4.5_0000706g0010' => 'nta', 'Nitab4.5_0001026g0030' => 'nta', 'Nitab4.5_0001026g0040' => 'nta', 'Nitab4.5_0002579g0090' => 'nta', 'Nitab4.5_0004636g0020' => 'nta', 'Nn1g05565' => 'nnu', 'Nn4g22805' => 'nnu', 'Nn5g29887' => 'nnu', 'Oeu010529.1' => 'oeu', 'Oeu024827.1' => 'oeu', 'Oeu025935.3' => 'oeu', 'Oeu029680.1' => 'oeu', 'Oeu032041.1' => 'oeu', 'Oeu034571.1' => 'oeu', 'Oeu034572.1' => 'oeu', 'Oeu041818.1' => 'oeu', 'Oeu056395.2' => 'oeu', 'Os01g0738100' => 'osa', 'Os05g0207900' => 'osa', 'Os06g0487900' => 'osa', 'Os12g0606900' => 'osa', 'Peaxi162Scf00299g00715' => 'pax', 'Peaxi162Scf00299g00720' => 'pax', 'Peaxi162Scf00338g00116' => 'pax', 'Peaxi162Scf00495g00216' => 'pax', 'PGR031G1992' => 'pgr', 'PGR119G2170' => 'pgr', 'PGSC0003DMG400006817' => 'stu', 'PGSC0003DMG400023378' => 'stu', 'PGSC0003DMG400030989' => 'stu', 'PGSC0003DMG400033572' => 'stu', 'PGSC0003DMG401009214' => 'stu', 'PGSC0003DMG402009214' => 'stu', 'PGSC0003DMG402009344' => 'stu', 'Phvul.003G052200' => 'pvu', 'Phvul.006G202100' => 'pvu', 'Phvul.009G037600' => 'pvu', 'Potri.002G105700' => 'ptr', 'Potri.005G155600' => 'ptr', 'Potri.007G115400' => 'ptr', 'Potri.010G040600' => 'ptr', 'Potri.017G044000' => 'ptr', 'Pp3c15_7620' => 'ppa', 'Pp3c17_2400' => 'ppa', 'Pp3c25_3200' => 'ppa', 'Pp3c25_7310' => 'ppa', 'Pp3c5_19870' => 'ppa', 'Pp3c9_4420' => 'ppa', 'Pp3c9_9780' => 'ppa', 'Pp3c9_9860' => 'ppa', 'PRCOL_00000994' => 'pco', 'Prupe.1G254600' => 'ppe', 'Prupe.6G149300' => 'ppe', 'Prupe.8G069500' => 'ppe', 'Psat0s1668g0040' => 'psa', 'Psat1g095800' => 'psa', 'Psat1g215560' => 'psa', 'Psat2g064720' => 'psa', 'Psat4g125280' => 'psa', 'Psat5g046880' => 'psa', 'PSO063G2616' => 'pso', 'PSO063G4088' => 'pso', 'PSO170G5589' => 'pso', 'PSO210G3238' => 'pso', 'PSO541G4975' => 'pso', 'PSO675G2554' => 'pso', 'PSO832G2131' => 'pso', 'QL01p018445' => 'qlo', 'QL03p061415' => 'qlo', 'QL09p017743' => 'qlo', 'RcHm_v2.0_Chr3g0455541' => 'rch', 'RcHm_v2.0_Chr4g0443941' => 'rch', 'RcHm_v2.0_Chr6g0271021' => 'rch', 'RcHm_v2.0_Chr7g0236781' => 'rch', 'Rhsim07G0211800' => 'rsi', 'Rhsim12G0121000' => 'rsi', 'Sabra02G0083000' => 'sbr', 'Sabra07G0094200' => 'sbr', 'Sabra10G0026500' => 'sbr', 'Sabra17G0029900' => 'sbr', 'Sc01g0001150' => 'sci', 'Sc11g0001210' => 'sci', 'Sed0002698' => 'sed', 'Sed0011755' => 'sed', 'Sed0021630' => 'sed', 'Sed0022127' => 'sed', 'SEGI_02443' => 'sgi', 'SEGI_12549' => 'sgi', 'SEGI_13379' => 'sgi', 'SEGI_20117' => 'sgi', 'SEGI_23287' => 'sgi', 'SEGI_36476' => 'sgi', 'SGA_v2.0_scaffold165G38250' => 'sas', 'SGA_v2.0_scaffold48G17832' => 'sas', 'SGA_v2.0_scaffold83G26374' => 'sas', 'SGA_v2.0_scaffold8G04226' => 'sas', 'SGA_v2.0_scaffold8G04227' => 'sas', 'SHI27221' => 'shi', 'SMO347G0330' => 'smo', 'SMO361G0085' => 'smo', 'SMO367G0188' => 'smo', 'Solyc01g105820.3' => 'sly', 'Solyc04g026200.3' => 'sly', 'Solyc04g026220.4' => 'sly', 'Solyc05g005630.4' => 'sly', 'Solyc11g017040.2' => 'sly', 'Solyc11g017060.2' => 'sly', 'Sopen00g006460' => 'spe', 'Sopen01g048280' => 'spe', 'Sopen04g014190' => 'spe', 'Sopen04g014200' => 'spe', 'Sopen04g014280' => 'spe', 'Sopen05g001630' => 'spe', 'Sopen11g009030' => 'spe', 'Sopen11g009050' => 'spe', 'Sp1g08320' => 'spa', 'Sp1g09220' => 'spa', 'Sp2g04460' => 'spa', 'Sp7g31340' => 'spa', 'SpUn0106_0010' => 'spa', 'TAR374G1183' => 'tar', 'TAR381G0500' => 'tar', 'TAR381G1516' => 'tar', 'TAR625G0946' => 'tar', 'THA.LOC104807180' => 'tha', 'THA.LOC104816798' => 'tha', 'THA.LOC104820191' => 'tha', 'THA.LOC104823662' => 'tha', 'Thecc.02G129400' => 'tca', 'Thecc.02G248100' => 'tca', 'Thecc.08G070600' => 'tca', 'Thhalv10006645m.g' => 'esa', 'Thhalv10007260m.g' => 'esa', 'Thhalv10023376m.g' => 'esa', 'Thhalv10024447m.g' => 'esa', 'TPR.G12734' => 'tpr', 'TPR.G13778' => 'tpr', 'TPR.G32100' => 'tpr', 'TPR.G34572' => 'tpr', 'TPR.G36050' => 'tpr', 'TPR.G39555' => 'tpr', 'TPR.G6330' => 'tpr', 'TPR.G6333' => 'tpr', 'TPR.G9503' => 'tpr', 'TWI12G0821' => 'twi', 'TWI18G1467' => 'twi', 'TWI56G0043' => 'twi', 'TWI59G0076' => 'twi', 'unitig_26.g10341' => 'ugi', 'unitig_744.g24188' => 'ugi', 'unitig_8.g4849' => 'ugi', 'unitig_8.g4850' => 'ugi', 'vmacro04653' => 'vma', 'vmacro04654' => 'vma', 'vmacro16254' => 'vma', 'VMungo0251G2116' => 'vmu', 'VMungo0540G0648' => 'vmu', 'VMungo1309G1057' => 'vmu', 'Zm00001eb031350' => 'zma', 'Zm00001eb153850' => 'zma', 'Zm00001eb208510' => 'zma', 'Zm00001eb367170' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001292' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001292' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001292' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001292' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001292', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '485', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04700' => 'bna', 'A02p26940' => 'bna', 'A06p06410' => 'bna', 'A06p07320' => 'bna', 'A06p07350' => 'bna', 'A08p34390' => 'bna', 'A09p17630' => 'bna', 'Aa31LG1G4360' => 'aar', 'Aa31LG1G5260' => 'aar', 'Aa31LG2G10070' => 'aar', 'Aa31LG2G10100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.75' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2545' => 'aag', 'Actinidia00305' => 'ach', 'Actinidia01160' => 'ach', 'Actinidia13513' => 'ach', 'Actinidia15043' => 'ach', 'Actinidia19631' => 'ach', 'Actinidia29624' => 'ach', 'Ah.02g129890' => 'amhyb', 'Ah.02g129900' => 'amhyb', 'Ah.03g132660' => 'amhyb', 'Ah.05g170840' => 'amhyb', 'AL1G20280' => 'aly', 'AL1G21390' => 'aly', 'AL2G16440' => 'aly', 'AL7G17890' => 'aly', 'Aqoxy3G02988' => 'aox', 'Aqoxy5G04000' => 'aox', 'Aqoxy6G00877' => 'aox', 'arahy.Tifrunner.gnm1.ann1.31UHS4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V6D2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72ZBT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK27YN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4Q9CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYF69H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAFC77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95VYD' => 'arhy', 'AT1G09730' => 'ath', 'AT1G10570' => 'ath', 'AT1G60220' => 'ath', 'AT2G10625' => 'ath', 'AT4G33620' => 'ath', 'ATR0730G146' => 'atr', 'ATR0767G167' => 'atr', 'ATR0824G075' => 'atr', 'Atru.chr11.2015' => 'acertr', 'Atru.chr13.1015' => 'acertr', 'Atru.chr13.1016' => 'acertr', 'Atru.chr6.1255' => 'acertr', 'AUR62005372' => 'cqu', 'AUR62014034' => 'cqu', 'AUR62019044' => 'cqu', 'AUR62027883' => 'cqu', 'AUR62027884' => 'cqu', 'BcaB07g31205' => 'bca', 'BcaC02g09016' => 'bca', 'BcaC02g09020' => 'bca', 'BcaC04g22220' => 'bca', 'BcaC05g24868' => 'bca', 'BcaC05g24936' => 'bca', 'BcaC09g52173' => 'bca', 'BcaNung06983' => 'bca', 'BcaNung06984' => 'bca', 'BolC1t00491H' => 'bol', 'BolC4t25507H' => 'bol', 'BolC4t25531H' => 'bol', 'BolC5t29532H' => 'bol', 'BolC5t29630H' => 'bol', 'BolC5t29631H' => 'bol', 'BolC8t48942H' => 'bol', 'BolC9t55101H' => 'bol', 'BraA01t00453Z' => 'bra', 'BraA02t07707Z' => 'bra', 'BraA06t23852Z' => 'bra', 'BraA06t23937Z' => 'bra', 'BraA08t35351Z' => 'bra', 'BraA09t37393Z' => 'bra', 'C01p05090' => 'bna', 'C04p39420' => 'bna', 'C04p39640' => 'bna', 'C05p07810' => 'bna', 'C05p08830' => 'bna', 'C08p13140' => 'bna', 'C09p21960' => 'bna', 'CAN.G376.11' => 'can', 'CAN.G523.11' => 'can', 'CAN.G60.9' => 'can', 'CAN.G61.18' => 'can', 'CANSAT01G2663' => 'cansat', 'CANSAT25G2063' => 'cansat', 'CANSAT54G0160' => 'cansat', 'CARHR009700' => 'chi', 'CARHR010730' => 'chi', 'CARHR052740' => 'chi', 'CARHR056550' => 'chi', 'CARHR221040' => 'chi', 'CARHR241710' => 'chi', 'Carub.0001s0907' => 'cru', 'Carub.0001s1001' => 'cru', 'Carub.0002s0503' => 'cru', 'Carub.0007s0682' => 'cru', 'Ca_00162_v3' => 'car', 'Ca_11800_v3' => 'car', 'Ca_16000_v3' => 'car', 'Ca_22729_v3' => 'car', 'Ca_30959_v3' => 'car', 'CBR_g17607' => 'cbr', 'CBR_g31692' => 'cbr', 'CBR_g324' => 'cbr', 'Cc00_g07670' => 'ccan', 'Cc02_g20940' => 'ccan', 'Cc11_g14630' => 'ccan', 'CDE01G0247' => 'cde', 'CDE01G0387' => 'cde', 'CDE02G3610' => 'cde', 'CDE04G0851' => 'cde', 'CDE04G1081' => 'cde', 'CDE04G3345' => 'cde', 'CDE06G2008' => 'cde', 'Cfa009140' => 'cfa', 'Cfa013790' => 'cfa', 'Cfa013791' => 'cfa', 'Ciclev10000201m.g' => 'ccl', 'Ciclev10029286m.g' => 'ccl', 'Ciclev10031081m.g' => 'ccl', 'CiPaw.05G150600' => 'cil', 'CiPaw.07G165900' => 'cil', 'CiPaw.08G055500' => 'cil', 'ClCG05G025290' => 'cla', 'ClCG08G011690' => 'cla', 'ClCG09G016070' => 'cla', 'COL.COLO4_32386' => 'col', 'COL.COLO4_35242' => 'col', 'COL.COLO4_36969' => 'col', 'Cpa.g.sc21.12' => 'cpa', 'Cpa.g.sc21.13' => 'cpa', 'Cpa.g.sc42.3' => 'cpa', 'Cpa.g.sc42.5' => 'cpa', 'Cpa.g.sc69.20' => 'cpa', 'Cpa.g.sc69.25' => 'cpa', 'Cre06.g278197' => 'cre', 'CsaV3_2G030290' => 'csa', 'CsaV3_5G031600' => 'csa', 'CsaV3_7G006900' => 'csa', 'CSS0010703' => 'camsi', 'CSS0024382' => 'camsi', 'CSS0029667' => 'camsi', 'CSS0039925' => 'camsi', 'CSS0046510' => 'camsi', 'CSS0049204' => 'camsi', 'DCAR_007092' => 'dca', 'DCAR_009562' => 'dca', 'DCAR_009563' => 'dca', 'DCAR_009566' => 'dca', 'DCAR_012858' => 'dca', 'DCAR_018007' => 'dca', 'DCAR_021913' => 'dca', 'DCAR_021914' => 'dca', 'Dinv15305' => 'din', 'Dinv15996' => 'din', 'Dinv24863' => 'din', 'Dinv44858' => 'din', 'Duzib052G0393' => 'dzi', 'Duzib248G0868' => 'dzi', 'Duzib248G1000' => 'dzi', 'ECA232G4048' => 'eca', 'ECA232G4484' => 'eca', 'ECA233G2320' => 'eca', 'ECA234G2749' => 'eca', 'ECA246G0922' => 'eca', 'ECA246G3273' => 'eca', 'EL10Ac1g01055' => 'bvu', 'EL10Ac6g13669' => 'bvu', 'Eucgr.F02147' => 'egr', 'Eucgr.H02612' => 'egr', 'FAN04G0518' => 'fan', 'FAN07G2035' => 'fan', 'FAN08G0616' => 'fan', 'FAN12G1507' => 'fan', 'FAN13G3173' => 'fan', 'FAN15G0696' => 'fan', 'FAN17G1642' => 'fan', 'FAN18G2083' => 'fan', 'FAN20G2933' => 'fan', 'FAN22G1387' => 'fan', 'FAN24G0423' => 'fan', 'FvH4_2g11700' => 'fve', 'FvH4_3g25421' => 'fve', 'FvH4_4g34560' => 'fve', 'FvH4_5g35390' => 'fve', 'Glyma.02G214000' => 'gma', 'Glyma.02G214100' => 'gma', 'Glyma.04G093800' => 'gma', 'Glyma.06G095600' => 'gma', 'Glyma.08G287700' => 'gma', 'Glyma.08G287800' => 'gma', 'Glyma.12G161850' => 'gma', 'Glyma.13G256800' => 'gma', 'Glyma.15G058100' => 'gma', 'Glyma.18G137700' => 'gma', 'Glyma.18G280300' => 'gma', 'Glyma.18G281500' => 'gma', 'Glyma.18G281600' => 'gma', 'Glyma.18G281700' => 'gma', 'Gohir.A01G132400' => 'ghi', 'Gohir.A03G177400' => 'ghi', 'Gohir.A04G115400' => 'ghi', 'Gohir.A04G135200' => 'ghi', 'Gohir.A05G219700' => 'ghi', 'Gohir.D01G117200' => 'ghi', 'Gohir.D02G201100' => 'ghi', 'Gohir.D04G156900' => 'ghi', 'Gohir.D04G178300' => 'ghi', 'Gohir.D05G222200' => 'ghi', 'Gorai.002G142500' => 'gra', 'Gorai.005G225700' => 'gra', 'Gorai.009G229600' => 'gra', 'Gorai.012G143900' => 'gra', 'Gorai.012G171400' => 'gra', 'GSVIVG01009172001' => 'vvi', 'GSVIVG01009173001' => 'vvi', 'GSVIVG01020234001' => 'vvi', 'GSVIVG01020235001' => 'vvi', 'HanXRQChr03g0063601' => 'han', 'HanXRQChr03g0065741' => 'han', 'HanXRQChr05g0157911' => 'han', 'HanXRQChr05g0163371' => 'han', 'HanXRQChr10g0289961' => 'han', 'HanXRQChr12g0368581' => 'han', 'HanXRQChr15g0484871' => 'han', 'HanXRQChr15g0490121' => 'han', 'Haze_12172' => 'cav', 'Haze_22451' => 'cav', 'Hma1.2p1_0010F.1_g006660' => 'hma', 'Hma1.2p1_0125F.1_g058890' => 'hma', 'HPP92_006224' => 'vpl', 'HPP92_008297' => 'vpl', 'HPP92_008298' => 'vpl', 'HPP92_020276' => 'vpl', 'HPP92_024212' => 'vpl', 'HPP92_027860' => 'vpl', 'Hund16858' => 'sun', 'Hund25343' => 'sun', 'Hund27020' => 'sun', 'Hund27770' => 'sun', 'Hund27774' => 'sun', 'Lalb_Chr08g0242481' => 'lal', 'Lalb_Chr09g0335011' => 'lal', 'Lalb_Chr11g0065021' => 'lal', 'Lalb_Chr18g0060411' => 'lal', 'Lj1g0015973' => 'lja', 'Lj4A718G40' => 'lonja', 'Lj4A737G51' => 'lonja', 'Lj4g0026951' => 'lja', 'Lj5A230G42' => 'lonja', 'Lj5A230G43' => 'lonja', 'Lj5A230T38' => 'lonja', 'Lj6g0027662' => 'lja', 'LjContig00408g0003702' => 'lja', 'Lsat_1_v5_gn_1_8661' => 'lsa', 'Lsat_1_v5_gn_1_98460' => 'lsa', 'Lsat_1_v5_gn_2_62680' => 'lsa', 'Lsat_1_v5_gn_3_45040' => 'lsa', 'Lsat_1_v5_gn_3_48100' => 'lsa', 'Lsat_1_v5_gn_3_95181' => 'lsa', 'Lsat_1_v5_gn_4_183321' => 'lsa', 'Lsat_1_v5_gn_5_109800' => 'lsa', 'Lsat_1_v5_gn_6_105041' => 'lsa', 'Lsat_1_v5_gn_6_56301' => 'lsa', 'Lsat_1_v5_gn_7_76281' => 'lsa', 'Lsat_1_v5_gn_8_157321' => 'lsa', 'Lsat_1_v5_gn_9_75061' => 'lsa', 'Lsat_1_v5_gn_9_77261' => 'lsa', 'Lsat_1_v5_gn_9_81600' => 'lsa', 'Manes.02G145000' => 'mes', 'Manes.07G038300' => 'mes', 'Manes.10G098700' => 'mes', 'Manes.12G029500' => 'mes', 'Manes.13G030900' => 'mes', 'Manes.18G059001' => 'mes', 'Mapoly0025s0054' => 'mpo', 'MBI01_g24502_MAGBIO' => 'mbi', 'MBI01_g42165_MAGBIO' => 'mbi', 'MBI02_g05218_MAGBIO' => 'mbi', 'MBI02_g18696_MAGBIO' => 'mbi', 'MBI02_g18697_MAGBIO' => 'mbi', 'MBI02_g18698_MAGBIO' => 'mbi', 'MBI02_g25595_MAGBIO' => 'mbi', 'MBI07_g34624_MAGBIO' => 'mbi', 'MBI16_g27584_MAGBIO' => 'mbi', 'MBI16_g36056_MAGBIO' => 'mbi', 'MBI18_g28166_MAGBIO' => 'mbi', 'MD08G1197400' => 'mdo', 'MD13G1091500' => 'mdo', 'MD15G1385000' => 'mdo', 'Medtr2g009580' => 'mtr', 'Medtr3g100390' => 'mtr', 'Medtr5g066230' => 'mtr', 'Medtr5g066240' => 'mtr', 'Medtr5g066530' => 'mtr', 'Medtr8g064370' => 'mtr', 'Medtr8g064470' => 'mtr', 'MELO3C011091.2' => 'cme', 'MELO3C012000.2' => 'cme', 'MELO3C018604.2' => 'cme', 'Migut.B00556' => 'egut', 'Migut.D01607' => 'egut', 'Migut.L01018' => 'egut', 'Migut.L01409' => 'egut', 'Migut.N02858' => 'egut', 'MSTRG.22177' => 'ama', 'MSTRG.24428' => 'ama', 'MSTRG.597' => 'ama', 'MSTRG.7894' => 'ama', 'Nitab4.5_0000034g0260' => 'nta', 'Nitab4.5_0000034g0270' => 'nta', 'Nitab4.5_0000113g0260' => 'nta', 'Nitab4.5_0000159g0110' => 'nta', 'Nitab4.5_0000531g0050' => 'nta', 'Nitab4.5_0000706g0010' => 'nta', 'Nitab4.5_0001026g0030' => 'nta', 'Nitab4.5_0001026g0040' => 'nta', 'Nitab4.5_0002579g0090' => 'nta', 'Nitab4.5_0004636g0020' => 'nta', 'Nn1g05565' => 'nnu', 'Nn4g22805' => 'nnu', 'Nn5g29887' => 'nnu', 'Oeu010529.1' => 'oeu', 'Oeu024827.1' => 'oeu', 'Oeu025935.3' => 'oeu', 'Oeu029680.1' => 'oeu', 'Oeu032041.1' => 'oeu', 'Oeu034571.1' => 'oeu', 'Oeu034572.1' => 'oeu', 'Oeu041818.1' => 'oeu', 'Oeu056395.2' => 'oeu', 'Os01g0738100' => 'osa', 'Os05g0207900' => 'osa', 'Os06g0487900' => 'osa', 'Os12g0606900' => 'osa', 'Peaxi162Scf00299g00715' => 'pax', 'Peaxi162Scf00299g00720' => 'pax', 'Peaxi162Scf00338g00116' => 'pax', 'Peaxi162Scf00495g00216' => 'pax', 'PGR031G1992' => 'pgr', 'PGR119G2170' => 'pgr', 'PGSC0003DMG400006817' => 'stu', 'PGSC0003DMG400023378' => 'stu', 'PGSC0003DMG400030989' => 'stu', 'PGSC0003DMG400033572' => 'stu', 'PGSC0003DMG401009214' => 'stu', 'PGSC0003DMG402009214' => 'stu', 'PGSC0003DMG402009344' => 'stu', 'Phvul.003G052200' => 'pvu', 'Phvul.006G202100' => 'pvu', 'Phvul.009G037600' => 'pvu', 'Potri.002G105700' => 'ptr', 'Potri.005G155600' => 'ptr', 'Potri.007G115400' => 'ptr', 'Potri.010G040600' => 'ptr', 'Potri.017G044000' => 'ptr', 'Pp3c15_7620' => 'ppa', 'Pp3c17_2400' => 'ppa', 'Pp3c25_3200' => 'ppa', 'Pp3c25_7310' => 'ppa', 'Pp3c5_19870' => 'ppa', 'Pp3c9_4420' => 'ppa', 'Pp3c9_9780' => 'ppa', 'Pp3c9_9860' => 'ppa', 'PRCOL_00000994' => 'pco', 'Prupe.1G254600' => 'ppe', 'Prupe.6G149300' => 'ppe', 'Prupe.8G069500' => 'ppe', 'Psat0s1668g0040' => 'psa', 'Psat1g095800' => 'psa', 'Psat1g215560' => 'psa', 'Psat2g064720' => 'psa', 'Psat4g125280' => 'psa', 'Psat5g046880' => 'psa', 'PSO063G2616' => 'pso', 'PSO063G4088' => 'pso', 'PSO170G5589' => 'pso', 'PSO210G3238' => 'pso', 'PSO541G4975' => 'pso', 'PSO675G2554' => 'pso', 'PSO832G2131' => 'pso', 'QL01p018445' => 'qlo', 'QL03p061415' => 'qlo', 'QL09p017743' => 'qlo', 'RcHm_v2.0_Chr3g0455541' => 'rch', 'RcHm_v2.0_Chr4g0443941' => 'rch', 'RcHm_v2.0_Chr6g0271021' => 'rch', 'RcHm_v2.0_Chr7g0236781' => 'rch', 'Rhsim07G0211800' => 'rsi', 'Rhsim12G0121000' => 'rsi', 'Sabra02G0083000' => 'sbr', 'Sabra07G0094200' => 'sbr', 'Sabra10G0026500' => 'sbr', 'Sabra17G0029900' => 'sbr', 'Sc01g0001150' => 'sci', 'Sc11g0001210' => 'sci', 'Sed0002698' => 'sed', 'Sed0011755' => 'sed', 'Sed0021630' => 'sed', 'Sed0022127' => 'sed', 'SEGI_02443' => 'sgi', 'SEGI_12549' => 'sgi', 'SEGI_13379' => 'sgi', 'SEGI_20117' => 'sgi', 'SEGI_23287' => 'sgi', 'SEGI_36476' => 'sgi', 'SGA_v2.0_scaffold165G38250' => 'sas', 'SGA_v2.0_scaffold48G17832' => 'sas', 'SGA_v2.0_scaffold83G26374' => 'sas', 'SGA_v2.0_scaffold8G04226' => 'sas', 'SGA_v2.0_scaffold8G04227' => 'sas', 'SHI27221' => 'shi', 'SMO347G0330' => 'smo', 'SMO361G0085' => 'smo', 'SMO367G0188' => 'smo', 'Solyc01g105820.3' => 'sly', 'Solyc04g026200.3' => 'sly', 'Solyc04g026220.4' => 'sly', 'Solyc05g005630.4' => 'sly', 'Solyc11g017040.2' => 'sly', 'Solyc11g017060.2' => 'sly', 'Sopen00g006460' => 'spe', 'Sopen01g048280' => 'spe', 'Sopen04g014190' => 'spe', 'Sopen04g014200' => 'spe', 'Sopen04g014280' => 'spe', 'Sopen05g001630' => 'spe', 'Sopen11g009030' => 'spe', 'Sopen11g009050' => 'spe', 'Sp1g08320' => 'spa', 'Sp1g09220' => 'spa', 'Sp2g04460' => 'spa', 'Sp7g31340' => 'spa', 'SpUn0106_0010' => 'spa', 'TAR374G1183' => 'tar', 'TAR381G0500' => 'tar', 'TAR381G1516' => 'tar', 'TAR625G0946' => 'tar', 'THA.LOC104807180' => 'tha', 'THA.LOC104816798' => 'tha', 'THA.LOC104820191' => 'tha', 'THA.LOC104823662' => 'tha', 'Thecc.02G129400' => 'tca', 'Thecc.02G248100' => 'tca', 'Thecc.08G070600' => 'tca', 'Thhalv10006645m.g' => 'esa', 'Thhalv10007260m.g' => 'esa', 'Thhalv10023376m.g' => 'esa', 'Thhalv10024447m.g' => 'esa', 'TPR.G12734' => 'tpr', 'TPR.G13778' => 'tpr', 'TPR.G32100' => 'tpr', 'TPR.G34572' => 'tpr', 'TPR.G36050' => 'tpr', 'TPR.G39555' => 'tpr', 'TPR.G6330' => 'tpr', 'TPR.G6333' => 'tpr', 'TPR.G9503' => 'tpr', 'TWI12G0821' => 'twi', 'TWI18G1467' => 'twi', 'TWI56G0043' => 'twi', 'TWI59G0076' => 'twi', 'unitig_26.g10341' => 'ugi', 'unitig_744.g24188' => 'ugi', 'unitig_8.g4849' => 'ugi', 'unitig_8.g4850' => 'ugi', 'vmacro04653' => 'vma', 'vmacro04654' => 'vma', 'vmacro16254' => 'vma', 'VMungo0251G2116' => 'vmu', 'VMungo0540G0648' => 'vmu', 'VMungo1309G1057' => 'vmu', 'Zm00001eb031350' => 'zma', 'Zm00001eb153850' => 'zma', 'Zm00001eb208510' => 'zma', 'Zm00001eb367170' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001292', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001292' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001292', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '485', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001292' ) ), 'genes' => array( 'A01p04700' => 'bna', 'A02p26940' => 'bna', 'A06p06410' => 'bna', 'A06p07320' => 'bna', 'A06p07350' => 'bna', 'A08p34390' => 'bna', 'A09p17630' => 'bna', 'Aa31LG1G4360' => 'aar', 'Aa31LG1G5260' => 'aar', 'Aa31LG2G10070' => 'aar', 'Aa31LG2G10100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.75' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2545' => 'aag', 'Actinidia00305' => 'ach', 'Actinidia01160' => 'ach', 'Actinidia13513' => 'ach', 'Actinidia15043' => 'ach', 'Actinidia19631' => 'ach', 'Actinidia29624' => 'ach', 'Ah.02g129890' => 'amhyb', 'Ah.02g129900' => 'amhyb', 'Ah.03g132660' => 'amhyb', 'Ah.05g170840' => 'amhyb', 'AL1G20280' => 'aly', 'AL1G21390' => 'aly', 'AL2G16440' => 'aly', 'AL7G17890' => 'aly', 'Aqoxy3G02988' => 'aox', 'Aqoxy5G04000' => 'aox', 'Aqoxy6G00877' => 'aox', 'arahy.Tifrunner.gnm1.ann1.31UHS4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V6D2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72ZBT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK27YN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4Q9CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYF69H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAFC77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95VYD' => 'arhy', 'AT1G09730' => 'ath', 'AT1G10570' => 'ath', 'AT1G60220' => 'ath', 'AT2G10625' => 'ath', 'AT4G33620' => 'ath', 'ATR0730G146' => 'atr', 'ATR0767G167' => 'atr', 'ATR0824G075' => 'atr', 'Atru.chr11.2015' => 'acertr', 'Atru.chr13.1015' => 'acertr', 'Atru.chr13.1016' => 'acertr', 'Atru.chr6.1255' => 'acertr', 'AUR62005372' => 'cqu', 'AUR62014034' => 'cqu', 'AUR62019044' => 'cqu', 'AUR62027883' => 'cqu', 'AUR62027884' => 'cqu', 'BcaB07g31205' => 'bca', 'BcaC02g09016' => 'bca', 'BcaC02g09020' => 'bca', 'BcaC04g22220' => 'bca', 'BcaC05g24868' => 'bca', 'BcaC05g24936' => 'bca', 'BcaC09g52173' => 'bca', 'BcaNung06983' => 'bca', 'BcaNung06984' => 'bca', 'BolC1t00491H' => 'bol', 'BolC4t25507H' => 'bol', 'BolC4t25531H' => 'bol', 'BolC5t29532H' => 'bol', 'BolC5t29630H' => 'bol', 'BolC5t29631H' => 'bol', 'BolC8t48942H' => 'bol', 'BolC9t55101H' => 'bol', 'BraA01t00453Z' => 'bra', 'BraA02t07707Z' => 'bra', 'BraA06t23852Z' => 'bra', 'BraA06t23937Z' => 'bra', 'BraA08t35351Z' => 'bra', 'BraA09t37393Z' => 'bra', 'C01p05090' => 'bna', 'C04p39420' => 'bna', 'C04p39640' => 'bna', 'C05p07810' => 'bna', 'C05p08830' => 'bna', 'C08p13140' => 'bna', 'C09p21960' => 'bna', 'CAN.G376.11' => 'can', 'CAN.G523.11' => 'can', 'CAN.G60.9' => 'can', 'CAN.G61.18' => 'can', 'CANSAT01G2663' => 'cansat', 'CANSAT25G2063' => 'cansat', 'CANSAT54G0160' => 'cansat', 'CARHR009700' => 'chi', 'CARHR010730' => 'chi', 'CARHR052740' => 'chi', 'CARHR056550' => 'chi', 'CARHR221040' => 'chi', 'CARHR241710' => 'chi', 'Carub.0001s0907' => 'cru', 'Carub.0001s1001' => 'cru', 'Carub.0002s0503' => 'cru', 'Carub.0007s0682' => 'cru', 'Ca_00162_v3' => 'car', 'Ca_11800_v3' => 'car', 'Ca_16000_v3' => 'car', 'Ca_22729_v3' => 'car', 'Ca_30959_v3' => 'car', 'CBR_g17607' => 'cbr', 'CBR_g31692' => 'cbr', 'CBR_g324' => 'cbr', 'Cc00_g07670' => 'ccan', 'Cc02_g20940' => 'ccan', 'Cc11_g14630' => 'ccan', 'CDE01G0247' => 'cde', 'CDE01G0387' => 'cde', 'CDE02G3610' => 'cde', 'CDE04G0851' => 'cde', 'CDE04G1081' => 'cde', 'CDE04G3345' => 'cde', 'CDE06G2008' => 'cde', 'Cfa009140' => 'cfa', 'Cfa013790' => 'cfa', 'Cfa013791' => 'cfa', 'Ciclev10000201m.g' => 'ccl', 'Ciclev10029286m.g' => 'ccl', 'Ciclev10031081m.g' => 'ccl', 'CiPaw.05G150600' => 'cil', 'CiPaw.07G165900' => 'cil', 'CiPaw.08G055500' => 'cil', 'ClCG05G025290' => 'cla', 'ClCG08G011690' => 'cla', 'ClCG09G016070' => 'cla', 'COL.COLO4_32386' => 'col', 'COL.COLO4_35242' => 'col', 'COL.COLO4_36969' => 'col', 'Cpa.g.sc21.12' => 'cpa', 'Cpa.g.sc21.13' => 'cpa', 'Cpa.g.sc42.3' => 'cpa', 'Cpa.g.sc42.5' => 'cpa', 'Cpa.g.sc69.20' => 'cpa', 'Cpa.g.sc69.25' => 'cpa', 'Cre06.g278197' => 'cre', 'CsaV3_2G030290' => 'csa', 'CsaV3_5G031600' => 'csa', 'CsaV3_7G006900' => 'csa', 'CSS0010703' => 'camsi', 'CSS0024382' => 'camsi', 'CSS0029667' => 'camsi', 'CSS0039925' => 'camsi', 'CSS0046510' => 'camsi', 'CSS0049204' => 'camsi', 'DCAR_007092' => 'dca', 'DCAR_009562' => 'dca', 'DCAR_009563' => 'dca', 'DCAR_009566' => 'dca', 'DCAR_012858' => 'dca', 'DCAR_018007' => 'dca', 'DCAR_021913' => 'dca', 'DCAR_021914' => 'dca', 'Dinv15305' => 'din', 'Dinv15996' => 'din', 'Dinv24863' => 'din', 'Dinv44858' => 'din', 'Duzib052G0393' => 'dzi', 'Duzib248G0868' => 'dzi', 'Duzib248G1000' => 'dzi', 'ECA232G4048' => 'eca', 'ECA232G4484' => 'eca', 'ECA233G2320' => 'eca', 'ECA234G2749' => 'eca', 'ECA246G0922' => 'eca', 'ECA246G3273' => 'eca', 'EL10Ac1g01055' => 'bvu', 'EL10Ac6g13669' => 'bvu', 'Eucgr.F02147' => 'egr', 'Eucgr.H02612' => 'egr', 'FAN04G0518' => 'fan', 'FAN07G2035' => 'fan', 'FAN08G0616' => 'fan', 'FAN12G1507' => 'fan', 'FAN13G3173' => 'fan', 'FAN15G0696' => 'fan', 'FAN17G1642' => 'fan', 'FAN18G2083' => 'fan', 'FAN20G2933' => 'fan', 'FAN22G1387' => 'fan', 'FAN24G0423' => 'fan', 'FvH4_2g11700' => 'fve', 'FvH4_3g25421' => 'fve', 'FvH4_4g34560' => 'fve', 'FvH4_5g35390' => 'fve', 'Glyma.02G214000' => 'gma', 'Glyma.02G214100' => 'gma', 'Glyma.04G093800' => 'gma', 'Glyma.06G095600' => 'gma', 'Glyma.08G287700' => 'gma', 'Glyma.08G287800' => 'gma', 'Glyma.12G161850' => 'gma', 'Glyma.13G256800' => 'gma', 'Glyma.15G058100' => 'gma', 'Glyma.18G137700' => 'gma', 'Glyma.18G280300' => 'gma', 'Glyma.18G281500' => 'gma', 'Glyma.18G281600' => 'gma', 'Glyma.18G281700' => 'gma', 'Gohir.A01G132400' => 'ghi', 'Gohir.A03G177400' => 'ghi', 'Gohir.A04G115400' => 'ghi', 'Gohir.A04G135200' => 'ghi', 'Gohir.A05G219700' => 'ghi', 'Gohir.D01G117200' => 'ghi', 'Gohir.D02G201100' => 'ghi', 'Gohir.D04G156900' => 'ghi', 'Gohir.D04G178300' => 'ghi', 'Gohir.D05G222200' => 'ghi', 'Gorai.002G142500' => 'gra', 'Gorai.005G225700' => 'gra', 'Gorai.009G229600' => 'gra', 'Gorai.012G143900' => 'gra', 'Gorai.012G171400' => 'gra', 'GSVIVG01009172001' => 'vvi', 'GSVIVG01009173001' => 'vvi', 'GSVIVG01020234001' => 'vvi', 'GSVIVG01020235001' => 'vvi', 'HanXRQChr03g0063601' => 'han', 'HanXRQChr03g0065741' => 'han', 'HanXRQChr05g0157911' => 'han', 'HanXRQChr05g0163371' => 'han', 'HanXRQChr10g0289961' => 'han', 'HanXRQChr12g0368581' => 'han', 'HanXRQChr15g0484871' => 'han', 'HanXRQChr15g0490121' => 'han', 'Haze_12172' => 'cav', 'Haze_22451' => 'cav', 'Hma1.2p1_0010F.1_g006660' => 'hma', 'Hma1.2p1_0125F.1_g058890' => 'hma', 'HPP92_006224' => 'vpl', 'HPP92_008297' => 'vpl', 'HPP92_008298' => 'vpl', 'HPP92_020276' => 'vpl', 'HPP92_024212' => 'vpl', 'HPP92_027860' => 'vpl', 'Hund16858' => 'sun', 'Hund25343' => 'sun', 'Hund27020' => 'sun', 'Hund27770' => 'sun', 'Hund27774' => 'sun', 'Lalb_Chr08g0242481' => 'lal', 'Lalb_Chr09g0335011' => 'lal', 'Lalb_Chr11g0065021' => 'lal', 'Lalb_Chr18g0060411' => 'lal', 'Lj1g0015973' => 'lja', 'Lj4A718G40' => 'lonja', 'Lj4A737G51' => 'lonja', 'Lj4g0026951' => 'lja', 'Lj5A230G42' => 'lonja', 'Lj5A230G43' => 'lonja', 'Lj5A230T38' => 'lonja', 'Lj6g0027662' => 'lja', 'LjContig00408g0003702' => 'lja', 'Lsat_1_v5_gn_1_8661' => 'lsa', 'Lsat_1_v5_gn_1_98460' => 'lsa', 'Lsat_1_v5_gn_2_62680' => 'lsa', 'Lsat_1_v5_gn_3_45040' => 'lsa', 'Lsat_1_v5_gn_3_48100' => 'lsa', 'Lsat_1_v5_gn_3_95181' => 'lsa', 'Lsat_1_v5_gn_4_183321' => 'lsa', 'Lsat_1_v5_gn_5_109800' => 'lsa', 'Lsat_1_v5_gn_6_105041' => 'lsa', 'Lsat_1_v5_gn_6_56301' => 'lsa', 'Lsat_1_v5_gn_7_76281' => 'lsa', 'Lsat_1_v5_gn_8_157321' => 'lsa', 'Lsat_1_v5_gn_9_75061' => 'lsa', 'Lsat_1_v5_gn_9_77261' => 'lsa', 'Lsat_1_v5_gn_9_81600' => 'lsa', 'Manes.02G145000' => 'mes', 'Manes.07G038300' => 'mes', 'Manes.10G098700' => 'mes', 'Manes.12G029500' => 'mes', 'Manes.13G030900' => 'mes', 'Manes.18G059001' => 'mes', 'Mapoly0025s0054' => 'mpo', 'MBI01_g24502_MAGBIO' => 'mbi', 'MBI01_g42165_MAGBIO' => 'mbi', 'MBI02_g05218_MAGBIO' => 'mbi', 'MBI02_g18696_MAGBIO' => 'mbi', 'MBI02_g18697_MAGBIO' => 'mbi', 'MBI02_g18698_MAGBIO' => 'mbi', 'MBI02_g25595_MAGBIO' => 'mbi', 'MBI07_g34624_MAGBIO' => 'mbi', 'MBI16_g27584_MAGBIO' => 'mbi', 'MBI16_g36056_MAGBIO' => 'mbi', 'MBI18_g28166_MAGBIO' => 'mbi', 'MD08G1197400' => 'mdo', 'MD13G1091500' => 'mdo', 'MD15G1385000' => 'mdo', 'Medtr2g009580' => 'mtr', 'Medtr3g100390' => 'mtr', 'Medtr5g066230' => 'mtr', 'Medtr5g066240' => 'mtr', 'Medtr5g066530' => 'mtr', 'Medtr8g064370' => 'mtr', 'Medtr8g064470' => 'mtr', 'MELO3C011091.2' => 'cme', 'MELO3C012000.2' => 'cme', 'MELO3C018604.2' => 'cme', 'Migut.B00556' => 'egut', 'Migut.D01607' => 'egut', 'Migut.L01018' => 'egut', 'Migut.L01409' => 'egut', 'Migut.N02858' => 'egut', 'MSTRG.22177' => 'ama', 'MSTRG.24428' => 'ama', 'MSTRG.597' => 'ama', 'MSTRG.7894' => 'ama', 'Nitab4.5_0000034g0260' => 'nta', 'Nitab4.5_0000034g0270' => 'nta', 'Nitab4.5_0000113g0260' => 'nta', 'Nitab4.5_0000159g0110' => 'nta', 'Nitab4.5_0000531g0050' => 'nta', 'Nitab4.5_0000706g0010' => 'nta', 'Nitab4.5_0001026g0030' => 'nta', 'Nitab4.5_0001026g0040' => 'nta', 'Nitab4.5_0002579g0090' => 'nta', 'Nitab4.5_0004636g0020' => 'nta', 'Nn1g05565' => 'nnu', 'Nn4g22805' => 'nnu', 'Nn5g29887' => 'nnu', 'Oeu010529.1' => 'oeu', 'Oeu024827.1' => 'oeu', 'Oeu025935.3' => 'oeu', 'Oeu029680.1' => 'oeu', 'Oeu032041.1' => 'oeu', 'Oeu034571.1' => 'oeu', 'Oeu034572.1' => 'oeu', 'Oeu041818.1' => 'oeu', 'Oeu056395.2' => 'oeu', 'Os01g0738100' => 'osa', 'Os05g0207900' => 'osa', 'Os06g0487900' => 'osa', 'Os12g0606900' => 'osa', 'Peaxi162Scf00299g00715' => 'pax', 'Peaxi162Scf00299g00720' => 'pax', 'Peaxi162Scf00338g00116' => 'pax', 'Peaxi162Scf00495g00216' => 'pax', 'PGR031G1992' => 'pgr', 'PGR119G2170' => 'pgr', 'PGSC0003DMG400006817' => 'stu', 'PGSC0003DMG400023378' => 'stu', 'PGSC0003DMG400030989' => 'stu', 'PGSC0003DMG400033572' => 'stu', 'PGSC0003DMG401009214' => 'stu', 'PGSC0003DMG402009214' => 'stu', 'PGSC0003DMG402009344' => 'stu', 'Phvul.003G052200' => 'pvu', 'Phvul.006G202100' => 'pvu', 'Phvul.009G037600' => 'pvu', 'Potri.002G105700' => 'ptr', 'Potri.005G155600' => 'ptr', 'Potri.007G115400' => 'ptr', 'Potri.010G040600' => 'ptr', 'Potri.017G044000' => 'ptr', 'Pp3c15_7620' => 'ppa', 'Pp3c17_2400' => 'ppa', 'Pp3c25_3200' => 'ppa', 'Pp3c25_7310' => 'ppa', 'Pp3c5_19870' => 'ppa', 'Pp3c9_4420' => 'ppa', 'Pp3c9_9780' => 'ppa', 'Pp3c9_9860' => 'ppa', 'PRCOL_00000994' => 'pco', 'Prupe.1G254600' => 'ppe', 'Prupe.6G149300' => 'ppe', 'Prupe.8G069500' => 'ppe', 'Psat0s1668g0040' => 'psa', 'Psat1g095800' => 'psa', 'Psat1g215560' => 'psa', 'Psat2g064720' => 'psa', 'Psat4g125280' => 'psa', 'Psat5g046880' => 'psa', 'PSO063G2616' => 'pso', 'PSO063G4088' => 'pso', 'PSO170G5589' => 'pso', 'PSO210G3238' => 'pso', 'PSO541G4975' => 'pso', 'PSO675G2554' => 'pso', 'PSO832G2131' => 'pso', 'QL01p018445' => 'qlo', 'QL03p061415' => 'qlo', 'QL09p017743' => 'qlo', 'RcHm_v2.0_Chr3g0455541' => 'rch', 'RcHm_v2.0_Chr4g0443941' => 'rch', 'RcHm_v2.0_Chr6g0271021' => 'rch', 'RcHm_v2.0_Chr7g0236781' => 'rch', 'Rhsim07G0211800' => 'rsi', 'Rhsim12G0121000' => 'rsi', 'Sabra02G0083000' => 'sbr', 'Sabra07G0094200' => 'sbr', 'Sabra10G0026500' => 'sbr', 'Sabra17G0029900' => 'sbr', 'Sc01g0001150' => 'sci', 'Sc11g0001210' => 'sci', 'Sed0002698' => 'sed', 'Sed0011755' => 'sed', 'Sed0021630' => 'sed', 'Sed0022127' => 'sed', 'SEGI_02443' => 'sgi', 'SEGI_12549' => 'sgi', 'SEGI_13379' => 'sgi', 'SEGI_20117' => 'sgi', 'SEGI_23287' => 'sgi', 'SEGI_36476' => 'sgi', 'SGA_v2.0_scaffold165G38250' => 'sas', 'SGA_v2.0_scaffold48G17832' => 'sas', 'SGA_v2.0_scaffold83G26374' => 'sas', 'SGA_v2.0_scaffold8G04226' => 'sas', 'SGA_v2.0_scaffold8G04227' => 'sas', 'SHI27221' => 'shi', 'SMO347G0330' => 'smo', 'SMO361G0085' => 'smo', 'SMO367G0188' => 'smo', 'Solyc01g105820.3' => 'sly', 'Solyc04g026200.3' => 'sly', 'Solyc04g026220.4' => 'sly', 'Solyc05g005630.4' => 'sly', 'Solyc11g017040.2' => 'sly', 'Solyc11g017060.2' => 'sly', 'Sopen00g006460' => 'spe', 'Sopen01g048280' => 'spe', 'Sopen04g014190' => 'spe', 'Sopen04g014200' => 'spe', 'Sopen04g014280' => 'spe', 'Sopen05g001630' => 'spe', 'Sopen11g009030' => 'spe', 'Sopen11g009050' => 'spe', 'Sp1g08320' => 'spa', 'Sp1g09220' => 'spa', 'Sp2g04460' => 'spa', 'Sp7g31340' => 'spa', 'SpUn0106_0010' => 'spa', 'TAR374G1183' => 'tar', 'TAR381G0500' => 'tar', 'TAR381G1516' => 'tar', 'TAR625G0946' => 'tar', 'THA.LOC104807180' => 'tha', 'THA.LOC104816798' => 'tha', 'THA.LOC104820191' => 'tha', 'THA.LOC104823662' => 'tha', 'Thecc.02G129400' => 'tca', 'Thecc.02G248100' => 'tca', 'Thecc.08G070600' => 'tca', 'Thhalv10006645m.g' => 'esa', 'Thhalv10007260m.g' => 'esa', 'Thhalv10023376m.g' => 'esa', 'Thhalv10024447m.g' => 'esa', 'TPR.G12734' => 'tpr', 'TPR.G13778' => 'tpr', 'TPR.G32100' => 'tpr', 'TPR.G34572' => 'tpr', 'TPR.G36050' => 'tpr', 'TPR.G39555' => 'tpr', 'TPR.G6330' => 'tpr', 'TPR.G6333' => 'tpr', 'TPR.G9503' => 'tpr', 'TWI12G0821' => 'twi', 'TWI18G1467' => 'twi', 'TWI56G0043' => 'twi', 'TWI59G0076' => 'twi', 'unitig_26.g10341' => 'ugi', 'unitig_744.g24188' => 'ugi', 'unitig_8.g4849' => 'ugi', 'unitig_8.g4850' => 'ugi', 'vmacro04653' => 'vma', 'vmacro04654' => 'vma', 'vmacro16254' => 'vma', 'VMungo0251G2116' => 'vmu', 'VMungo0540G0648' => 'vmu', 'VMungo1309G1057' => 'vmu', 'Zm00001eb031350' => 'zma', 'Zm00001eb153850' => 'zma', 'Zm00001eb208510' => 'zma', 'Zm00001eb367170' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001292' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001292' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001292' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001292' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001292', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '485', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04700' => 'bna', 'A02p26940' => 'bna', 'A06p06410' => 'bna', 'A06p07320' => 'bna', 'A06p07350' => 'bna', 'A08p34390' => 'bna', 'A09p17630' => 'bna', 'Aa31LG1G4360' => 'aar', 'Aa31LG1G5260' => 'aar', 'Aa31LG2G10070' => 'aar', 'Aa31LG2G10100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.75' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2545' => 'aag', 'Actinidia00305' => 'ach', 'Actinidia01160' => 'ach', 'Actinidia13513' => 'ach', 'Actinidia15043' => 'ach', 'Actinidia19631' => 'ach', 'Actinidia29624' => 'ach', 'Ah.02g129890' => 'amhyb', 'Ah.02g129900' => 'amhyb', 'Ah.03g132660' => 'amhyb', 'Ah.05g170840' => 'amhyb', 'AL1G20280' => 'aly', 'AL1G21390' => 'aly', 'AL2G16440' => 'aly', 'AL7G17890' => 'aly', 'Aqoxy3G02988' => 'aox', 'Aqoxy5G04000' => 'aox', 'Aqoxy6G00877' => 'aox', 'arahy.Tifrunner.gnm1.ann1.31UHS4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V6D2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72ZBT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK27YN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4Q9CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYF69H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAFC77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95VYD' => 'arhy', 'AT1G09730' => 'ath', 'AT1G10570' => 'ath', 'AT1G60220' => 'ath', 'AT2G10625' => 'ath', 'AT4G33620' => 'ath', 'ATR0730G146' => 'atr', 'ATR0767G167' => 'atr', 'ATR0824G075' => 'atr', 'Atru.chr11.2015' => 'acertr', 'Atru.chr13.1015' => 'acertr', 'Atru.chr13.1016' => 'acertr', 'Atru.chr6.1255' => 'acertr', 'AUR62005372' => 'cqu', 'AUR62014034' => 'cqu', 'AUR62019044' => 'cqu', 'AUR62027883' => 'cqu', 'AUR62027884' => 'cqu', 'BcaB07g31205' => 'bca', 'BcaC02g09016' => 'bca', 'BcaC02g09020' => 'bca', 'BcaC04g22220' => 'bca', 'BcaC05g24868' => 'bca', 'BcaC05g24936' => 'bca', 'BcaC09g52173' => 'bca', 'BcaNung06983' => 'bca', 'BcaNung06984' => 'bca', 'BolC1t00491H' => 'bol', 'BolC4t25507H' => 'bol', 'BolC4t25531H' => 'bol', 'BolC5t29532H' => 'bol', 'BolC5t29630H' => 'bol', 'BolC5t29631H' => 'bol', 'BolC8t48942H' => 'bol', 'BolC9t55101H' => 'bol', 'BraA01t00453Z' => 'bra', 'BraA02t07707Z' => 'bra', 'BraA06t23852Z' => 'bra', 'BraA06t23937Z' => 'bra', 'BraA08t35351Z' => 'bra', 'BraA09t37393Z' => 'bra', 'C01p05090' => 'bna', 'C04p39420' => 'bna', 'C04p39640' => 'bna', 'C05p07810' => 'bna', 'C05p08830' => 'bna', 'C08p13140' => 'bna', 'C09p21960' => 'bna', 'CAN.G376.11' => 'can', 'CAN.G523.11' => 'can', 'CAN.G60.9' => 'can', 'CAN.G61.18' => 'can', 'CANSAT01G2663' => 'cansat', 'CANSAT25G2063' => 'cansat', 'CANSAT54G0160' => 'cansat', 'CARHR009700' => 'chi', 'CARHR010730' => 'chi', 'CARHR052740' => 'chi', 'CARHR056550' => 'chi', 'CARHR221040' => 'chi', 'CARHR241710' => 'chi', 'Carub.0001s0907' => 'cru', 'Carub.0001s1001' => 'cru', 'Carub.0002s0503' => 'cru', 'Carub.0007s0682' => 'cru', 'Ca_00162_v3' => 'car', 'Ca_11800_v3' => 'car', 'Ca_16000_v3' => 'car', 'Ca_22729_v3' => 'car', 'Ca_30959_v3' => 'car', 'CBR_g17607' => 'cbr', 'CBR_g31692' => 'cbr', 'CBR_g324' => 'cbr', 'Cc00_g07670' => 'ccan', 'Cc02_g20940' => 'ccan', 'Cc11_g14630' => 'ccan', 'CDE01G0247' => 'cde', 'CDE01G0387' => 'cde', 'CDE02G3610' => 'cde', 'CDE04G0851' => 'cde', 'CDE04G1081' => 'cde', 'CDE04G3345' => 'cde', 'CDE06G2008' => 'cde', 'Cfa009140' => 'cfa', 'Cfa013790' => 'cfa', 'Cfa013791' => 'cfa', 'Ciclev10000201m.g' => 'ccl', 'Ciclev10029286m.g' => 'ccl', 'Ciclev10031081m.g' => 'ccl', 'CiPaw.05G150600' => 'cil', 'CiPaw.07G165900' => 'cil', 'CiPaw.08G055500' => 'cil', 'ClCG05G025290' => 'cla', 'ClCG08G011690' => 'cla', 'ClCG09G016070' => 'cla', 'COL.COLO4_32386' => 'col', 'COL.COLO4_35242' => 'col', 'COL.COLO4_36969' => 'col', 'Cpa.g.sc21.12' => 'cpa', 'Cpa.g.sc21.13' => 'cpa', 'Cpa.g.sc42.3' => 'cpa', 'Cpa.g.sc42.5' => 'cpa', 'Cpa.g.sc69.20' => 'cpa', 'Cpa.g.sc69.25' => 'cpa', 'Cre06.g278197' => 'cre', 'CsaV3_2G030290' => 'csa', 'CsaV3_5G031600' => 'csa', 'CsaV3_7G006900' => 'csa', 'CSS0010703' => 'camsi', 'CSS0024382' => 'camsi', 'CSS0029667' => 'camsi', 'CSS0039925' => 'camsi', 'CSS0046510' => 'camsi', 'CSS0049204' => 'camsi', 'DCAR_007092' => 'dca', 'DCAR_009562' => 'dca', 'DCAR_009563' => 'dca', 'DCAR_009566' => 'dca', 'DCAR_012858' => 'dca', 'DCAR_018007' => 'dca', 'DCAR_021913' => 'dca', 'DCAR_021914' => 'dca', 'Dinv15305' => 'din', 'Dinv15996' => 'din', 'Dinv24863' => 'din', 'Dinv44858' => 'din', 'Duzib052G0393' => 'dzi', 'Duzib248G0868' => 'dzi', 'Duzib248G1000' => 'dzi', 'ECA232G4048' => 'eca', 'ECA232G4484' => 'eca', 'ECA233G2320' => 'eca', 'ECA234G2749' => 'eca', 'ECA246G0922' => 'eca', 'ECA246G3273' => 'eca', 'EL10Ac1g01055' => 'bvu', 'EL10Ac6g13669' => 'bvu', 'Eucgr.F02147' => 'egr', 'Eucgr.H02612' => 'egr', 'FAN04G0518' => 'fan', 'FAN07G2035' => 'fan', 'FAN08G0616' => 'fan', 'FAN12G1507' => 'fan', 'FAN13G3173' => 'fan', 'FAN15G0696' => 'fan', 'FAN17G1642' => 'fan', 'FAN18G2083' => 'fan', 'FAN20G2933' => 'fan', 'FAN22G1387' => 'fan', 'FAN24G0423' => 'fan', 'FvH4_2g11700' => 'fve', 'FvH4_3g25421' => 'fve', 'FvH4_4g34560' => 'fve', 'FvH4_5g35390' => 'fve', 'Glyma.02G214000' => 'gma', 'Glyma.02G214100' => 'gma', 'Glyma.04G093800' => 'gma', 'Glyma.06G095600' => 'gma', 'Glyma.08G287700' => 'gma', 'Glyma.08G287800' => 'gma', 'Glyma.12G161850' => 'gma', 'Glyma.13G256800' => 'gma', 'Glyma.15G058100' => 'gma', 'Glyma.18G137700' => 'gma', 'Glyma.18G280300' => 'gma', 'Glyma.18G281500' => 'gma', 'Glyma.18G281600' => 'gma', 'Glyma.18G281700' => 'gma', 'Gohir.A01G132400' => 'ghi', 'Gohir.A03G177400' => 'ghi', 'Gohir.A04G115400' => 'ghi', 'Gohir.A04G135200' => 'ghi', 'Gohir.A05G219700' => 'ghi', 'Gohir.D01G117200' => 'ghi', 'Gohir.D02G201100' => 'ghi', 'Gohir.D04G156900' => 'ghi', 'Gohir.D04G178300' => 'ghi', 'Gohir.D05G222200' => 'ghi', 'Gorai.002G142500' => 'gra', 'Gorai.005G225700' => 'gra', 'Gorai.009G229600' => 'gra', 'Gorai.012G143900' => 'gra', 'Gorai.012G171400' => 'gra', 'GSVIVG01009172001' => 'vvi', 'GSVIVG01009173001' => 'vvi', 'GSVIVG01020234001' => 'vvi', 'GSVIVG01020235001' => 'vvi', 'HanXRQChr03g0063601' => 'han', 'HanXRQChr03g0065741' => 'han', 'HanXRQChr05g0157911' => 'han', 'HanXRQChr05g0163371' => 'han', 'HanXRQChr10g0289961' => 'han', 'HanXRQChr12g0368581' => 'han', 'HanXRQChr15g0484871' => 'han', 'HanXRQChr15g0490121' => 'han', 'Haze_12172' => 'cav', 'Haze_22451' => 'cav', 'Hma1.2p1_0010F.1_g006660' => 'hma', 'Hma1.2p1_0125F.1_g058890' => 'hma', 'HPP92_006224' => 'vpl', 'HPP92_008297' => 'vpl', 'HPP92_008298' => 'vpl', 'HPP92_020276' => 'vpl', 'HPP92_024212' => 'vpl', 'HPP92_027860' => 'vpl', 'Hund16858' => 'sun', 'Hund25343' => 'sun', 'Hund27020' => 'sun', 'Hund27770' => 'sun', 'Hund27774' => 'sun', 'Lalb_Chr08g0242481' => 'lal', 'Lalb_Chr09g0335011' => 'lal', 'Lalb_Chr11g0065021' => 'lal', 'Lalb_Chr18g0060411' => 'lal', 'Lj1g0015973' => 'lja', 'Lj4A718G40' => 'lonja', 'Lj4A737G51' => 'lonja', 'Lj4g0026951' => 'lja', 'Lj5A230G42' => 'lonja', 'Lj5A230G43' => 'lonja', 'Lj5A230T38' => 'lonja', 'Lj6g0027662' => 'lja', 'LjContig00408g0003702' => 'lja', 'Lsat_1_v5_gn_1_8661' => 'lsa', 'Lsat_1_v5_gn_1_98460' => 'lsa', 'Lsat_1_v5_gn_2_62680' => 'lsa', 'Lsat_1_v5_gn_3_45040' => 'lsa', 'Lsat_1_v5_gn_3_48100' => 'lsa', 'Lsat_1_v5_gn_3_95181' => 'lsa', 'Lsat_1_v5_gn_4_183321' => 'lsa', 'Lsat_1_v5_gn_5_109800' => 'lsa', 'Lsat_1_v5_gn_6_105041' => 'lsa', 'Lsat_1_v5_gn_6_56301' => 'lsa', 'Lsat_1_v5_gn_7_76281' => 'lsa', 'Lsat_1_v5_gn_8_157321' => 'lsa', 'Lsat_1_v5_gn_9_75061' => 'lsa', 'Lsat_1_v5_gn_9_77261' => 'lsa', 'Lsat_1_v5_gn_9_81600' => 'lsa', 'Manes.02G145000' => 'mes', 'Manes.07G038300' => 'mes', 'Manes.10G098700' => 'mes', 'Manes.12G029500' => 'mes', 'Manes.13G030900' => 'mes', 'Manes.18G059001' => 'mes', 'Mapoly0025s0054' => 'mpo', 'MBI01_g24502_MAGBIO' => 'mbi', 'MBI01_g42165_MAGBIO' => 'mbi', 'MBI02_g05218_MAGBIO' => 'mbi', 'MBI02_g18696_MAGBIO' => 'mbi', 'MBI02_g18697_MAGBIO' => 'mbi', 'MBI02_g18698_MAGBIO' => 'mbi', 'MBI02_g25595_MAGBIO' => 'mbi', 'MBI07_g34624_MAGBIO' => 'mbi', 'MBI16_g27584_MAGBIO' => 'mbi', 'MBI16_g36056_MAGBIO' => 'mbi', 'MBI18_g28166_MAGBIO' => 'mbi', 'MD08G1197400' => 'mdo', 'MD13G1091500' => 'mdo', 'MD15G1385000' => 'mdo', 'Medtr2g009580' => 'mtr', 'Medtr3g100390' => 'mtr', 'Medtr5g066230' => 'mtr', 'Medtr5g066240' => 'mtr', 'Medtr5g066530' => 'mtr', 'Medtr8g064370' => 'mtr', 'Medtr8g064470' => 'mtr', 'MELO3C011091.2' => 'cme', 'MELO3C012000.2' => 'cme', 'MELO3C018604.2' => 'cme', 'Migut.B00556' => 'egut', 'Migut.D01607' => 'egut', 'Migut.L01018' => 'egut', 'Migut.L01409' => 'egut', 'Migut.N02858' => 'egut', 'MSTRG.22177' => 'ama', 'MSTRG.24428' => 'ama', 'MSTRG.597' => 'ama', 'MSTRG.7894' => 'ama', 'Nitab4.5_0000034g0260' => 'nta', 'Nitab4.5_0000034g0270' => 'nta', 'Nitab4.5_0000113g0260' => 'nta', 'Nitab4.5_0000159g0110' => 'nta', 'Nitab4.5_0000531g0050' => 'nta', 'Nitab4.5_0000706g0010' => 'nta', 'Nitab4.5_0001026g0030' => 'nta', 'Nitab4.5_0001026g0040' => 'nta', 'Nitab4.5_0002579g0090' => 'nta', 'Nitab4.5_0004636g0020' => 'nta', 'Nn1g05565' => 'nnu', 'Nn4g22805' => 'nnu', 'Nn5g29887' => 'nnu', 'Oeu010529.1' => 'oeu', 'Oeu024827.1' => 'oeu', 'Oeu025935.3' => 'oeu', 'Oeu029680.1' => 'oeu', 'Oeu032041.1' => 'oeu', 'Oeu034571.1' => 'oeu', 'Oeu034572.1' => 'oeu', 'Oeu041818.1' => 'oeu', 'Oeu056395.2' => 'oeu', 'Os01g0738100' => 'osa', 'Os05g0207900' => 'osa', 'Os06g0487900' => 'osa', 'Os12g0606900' => 'osa', 'Peaxi162Scf00299g00715' => 'pax', 'Peaxi162Scf00299g00720' => 'pax', 'Peaxi162Scf00338g00116' => 'pax', 'Peaxi162Scf00495g00216' => 'pax', 'PGR031G1992' => 'pgr', 'PGR119G2170' => 'pgr', 'PGSC0003DMG400006817' => 'stu', 'PGSC0003DMG400023378' => 'stu', 'PGSC0003DMG400030989' => 'stu', 'PGSC0003DMG400033572' => 'stu', 'PGSC0003DMG401009214' => 'stu', 'PGSC0003DMG402009214' => 'stu', 'PGSC0003DMG402009344' => 'stu', 'Phvul.003G052200' => 'pvu', 'Phvul.006G202100' => 'pvu', 'Phvul.009G037600' => 'pvu', 'Potri.002G105700' => 'ptr', 'Potri.005G155600' => 'ptr', 'Potri.007G115400' => 'ptr', 'Potri.010G040600' => 'ptr', 'Potri.017G044000' => 'ptr', 'Pp3c15_7620' => 'ppa', 'Pp3c17_2400' => 'ppa', 'Pp3c25_3200' => 'ppa', 'Pp3c25_7310' => 'ppa', 'Pp3c5_19870' => 'ppa', 'Pp3c9_4420' => 'ppa', 'Pp3c9_9780' => 'ppa', 'Pp3c9_9860' => 'ppa', 'PRCOL_00000994' => 'pco', 'Prupe.1G254600' => 'ppe', 'Prupe.6G149300' => 'ppe', 'Prupe.8G069500' => 'ppe', 'Psat0s1668g0040' => 'psa', 'Psat1g095800' => 'psa', 'Psat1g215560' => 'psa', 'Psat2g064720' => 'psa', 'Psat4g125280' => 'psa', 'Psat5g046880' => 'psa', 'PSO063G2616' => 'pso', 'PSO063G4088' => 'pso', 'PSO170G5589' => 'pso', 'PSO210G3238' => 'pso', 'PSO541G4975' => 'pso', 'PSO675G2554' => 'pso', 'PSO832G2131' => 'pso', 'QL01p018445' => 'qlo', 'QL03p061415' => 'qlo', 'QL09p017743' => 'qlo', 'RcHm_v2.0_Chr3g0455541' => 'rch', 'RcHm_v2.0_Chr4g0443941' => 'rch', 'RcHm_v2.0_Chr6g0271021' => 'rch', 'RcHm_v2.0_Chr7g0236781' => 'rch', 'Rhsim07G0211800' => 'rsi', 'Rhsim12G0121000' => 'rsi', 'Sabra02G0083000' => 'sbr', 'Sabra07G0094200' => 'sbr', 'Sabra10G0026500' => 'sbr', 'Sabra17G0029900' => 'sbr', 'Sc01g0001150' => 'sci', 'Sc11g0001210' => 'sci', 'Sed0002698' => 'sed', 'Sed0011755' => 'sed', 'Sed0021630' => 'sed', 'Sed0022127' => 'sed', 'SEGI_02443' => 'sgi', 'SEGI_12549' => 'sgi', 'SEGI_13379' => 'sgi', 'SEGI_20117' => 'sgi', 'SEGI_23287' => 'sgi', 'SEGI_36476' => 'sgi', 'SGA_v2.0_scaffold165G38250' => 'sas', 'SGA_v2.0_scaffold48G17832' => 'sas', 'SGA_v2.0_scaffold83G26374' => 'sas', 'SGA_v2.0_scaffold8G04226' => 'sas', 'SGA_v2.0_scaffold8G04227' => 'sas', 'SHI27221' => 'shi', 'SMO347G0330' => 'smo', 'SMO361G0085' => 'smo', 'SMO367G0188' => 'smo', 'Solyc01g105820.3' => 'sly', 'Solyc04g026200.3' => 'sly', 'Solyc04g026220.4' => 'sly', 'Solyc05g005630.4' => 'sly', 'Solyc11g017040.2' => 'sly', 'Solyc11g017060.2' => 'sly', 'Sopen00g006460' => 'spe', 'Sopen01g048280' => 'spe', 'Sopen04g014190' => 'spe', 'Sopen04g014200' => 'spe', 'Sopen04g014280' => 'spe', 'Sopen05g001630' => 'spe', 'Sopen11g009030' => 'spe', 'Sopen11g009050' => 'spe', 'Sp1g08320' => 'spa', 'Sp1g09220' => 'spa', 'Sp2g04460' => 'spa', 'Sp7g31340' => 'spa', 'SpUn0106_0010' => 'spa', 'TAR374G1183' => 'tar', 'TAR381G0500' => 'tar', 'TAR381G1516' => 'tar', 'TAR625G0946' => 'tar', 'THA.LOC104807180' => 'tha', 'THA.LOC104816798' => 'tha', 'THA.LOC104820191' => 'tha', 'THA.LOC104823662' => 'tha', 'Thecc.02G129400' => 'tca', 'Thecc.02G248100' => 'tca', 'Thecc.08G070600' => 'tca', 'Thhalv10006645m.g' => 'esa', 'Thhalv10007260m.g' => 'esa', 'Thhalv10023376m.g' => 'esa', 'Thhalv10024447m.g' => 'esa', 'TPR.G12734' => 'tpr', 'TPR.G13778' => 'tpr', 'TPR.G32100' => 'tpr', 'TPR.G34572' => 'tpr', 'TPR.G36050' => 'tpr', 'TPR.G39555' => 'tpr', 'TPR.G6330' => 'tpr', 'TPR.G6333' => 'tpr', 'TPR.G9503' => 'tpr', 'TWI12G0821' => 'twi', 'TWI18G1467' => 'twi', 'TWI56G0043' => 'twi', 'TWI59G0076' => 'twi', 'unitig_26.g10341' => 'ugi', 'unitig_744.g24188' => 'ugi', 'unitig_8.g4849' => 'ugi', 'unitig_8.g4850' => 'ugi', 'vmacro04653' => 'vma', 'vmacro04654' => 'vma', 'vmacro16254' => 'vma', 'VMungo0251G2116' => 'vmu', 'VMungo0540G0648' => 'vmu', 'VMungo1309G1057' => 'vmu', 'Zm00001eb031350' => 'zma', 'Zm00001eb153850' => 'zma', 'Zm00001eb208510' => 'zma', 'Zm00001eb367170' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001292', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001292' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001292', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '485', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001292' ) ), 'genes' => array( 'A01p04700' => 'bna', 'A02p26940' => 'bna', 'A06p06410' => 'bna', 'A06p07320' => 'bna', 'A06p07350' => 'bna', 'A08p34390' => 'bna', 'A09p17630' => 'bna', 'Aa31LG1G4360' => 'aar', 'Aa31LG1G5260' => 'aar', 'Aa31LG2G10070' => 'aar', 'Aa31LG2G10100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.75' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2545' => 'aag', 'Actinidia00305' => 'ach', 'Actinidia01160' => 'ach', 'Actinidia13513' => 'ach', 'Actinidia15043' => 'ach', 'Actinidia19631' => 'ach', 'Actinidia29624' => 'ach', 'Ah.02g129890' => 'amhyb', 'Ah.02g129900' => 'amhyb', 'Ah.03g132660' => 'amhyb', 'Ah.05g170840' => 'amhyb', 'AL1G20280' => 'aly', 'AL1G21390' => 'aly', 'AL2G16440' => 'aly', 'AL7G17890' => 'aly', 'Aqoxy3G02988' => 'aox', 'Aqoxy5G04000' => 'aox', 'Aqoxy6G00877' => 'aox', 'arahy.Tifrunner.gnm1.ann1.31UHS4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V6D2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72ZBT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK27YN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4Q9CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYF69H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAFC77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95VYD' => 'arhy', 'AT1G09730' => 'ath', 'AT1G10570' => 'ath', 'AT1G60220' => 'ath', 'AT2G10625' => 'ath', 'AT4G33620' => 'ath', 'ATR0730G146' => 'atr', 'ATR0767G167' => 'atr', 'ATR0824G075' => 'atr', 'Atru.chr11.2015' => 'acertr', 'Atru.chr13.1015' => 'acertr', 'Atru.chr13.1016' => 'acertr', 'Atru.chr6.1255' => 'acertr', 'AUR62005372' => 'cqu', 'AUR62014034' => 'cqu', 'AUR62019044' => 'cqu', 'AUR62027883' => 'cqu', 'AUR62027884' => 'cqu', 'BcaB07g31205' => 'bca', 'BcaC02g09016' => 'bca', 'BcaC02g09020' => 'bca', 'BcaC04g22220' => 'bca', 'BcaC05g24868' => 'bca', 'BcaC05g24936' => 'bca', 'BcaC09g52173' => 'bca', 'BcaNung06983' => 'bca', 'BcaNung06984' => 'bca', 'BolC1t00491H' => 'bol', 'BolC4t25507H' => 'bol', 'BolC4t25531H' => 'bol', 'BolC5t29532H' => 'bol', 'BolC5t29630H' => 'bol', 'BolC5t29631H' => 'bol', 'BolC8t48942H' => 'bol', 'BolC9t55101H' => 'bol', 'BraA01t00453Z' => 'bra', 'BraA02t07707Z' => 'bra', 'BraA06t23852Z' => 'bra', 'BraA06t23937Z' => 'bra', 'BraA08t35351Z' => 'bra', 'BraA09t37393Z' => 'bra', 'C01p05090' => 'bna', 'C04p39420' => 'bna', 'C04p39640' => 'bna', 'C05p07810' => 'bna', 'C05p08830' => 'bna', 'C08p13140' => 'bna', 'C09p21960' => 'bna', 'CAN.G376.11' => 'can', 'CAN.G523.11' => 'can', 'CAN.G60.9' => 'can', 'CAN.G61.18' => 'can', 'CANSAT01G2663' => 'cansat', 'CANSAT25G2063' => 'cansat', 'CANSAT54G0160' => 'cansat', 'CARHR009700' => 'chi', 'CARHR010730' => 'chi', 'CARHR052740' => 'chi', 'CARHR056550' => 'chi', 'CARHR221040' => 'chi', 'CARHR241710' => 'chi', 'Carub.0001s0907' => 'cru', 'Carub.0001s1001' => 'cru', 'Carub.0002s0503' => 'cru', 'Carub.0007s0682' => 'cru', 'Ca_00162_v3' => 'car', 'Ca_11800_v3' => 'car', 'Ca_16000_v3' => 'car', 'Ca_22729_v3' => 'car', 'Ca_30959_v3' => 'car', 'CBR_g17607' => 'cbr', 'CBR_g31692' => 'cbr', 'CBR_g324' => 'cbr', 'Cc00_g07670' => 'ccan', 'Cc02_g20940' => 'ccan', 'Cc11_g14630' => 'ccan', 'CDE01G0247' => 'cde', 'CDE01G0387' => 'cde', 'CDE02G3610' => 'cde', 'CDE04G0851' => 'cde', 'CDE04G1081' => 'cde', 'CDE04G3345' => 'cde', 'CDE06G2008' => 'cde', 'Cfa009140' => 'cfa', 'Cfa013790' => 'cfa', 'Cfa013791' => 'cfa', 'Ciclev10000201m.g' => 'ccl', 'Ciclev10029286m.g' => 'ccl', 'Ciclev10031081m.g' => 'ccl', 'CiPaw.05G150600' => 'cil', 'CiPaw.07G165900' => 'cil', 'CiPaw.08G055500' => 'cil', 'ClCG05G025290' => 'cla', 'ClCG08G011690' => 'cla', 'ClCG09G016070' => 'cla', 'COL.COLO4_32386' => 'col', 'COL.COLO4_35242' => 'col', 'COL.COLO4_36969' => 'col', 'Cpa.g.sc21.12' => 'cpa', 'Cpa.g.sc21.13' => 'cpa', 'Cpa.g.sc42.3' => 'cpa', 'Cpa.g.sc42.5' => 'cpa', 'Cpa.g.sc69.20' => 'cpa', 'Cpa.g.sc69.25' => 'cpa', 'Cre06.g278197' => 'cre', 'CsaV3_2G030290' => 'csa', 'CsaV3_5G031600' => 'csa', 'CsaV3_7G006900' => 'csa', 'CSS0010703' => 'camsi', 'CSS0024382' => 'camsi', 'CSS0029667' => 'camsi', 'CSS0039925' => 'camsi', 'CSS0046510' => 'camsi', 'CSS0049204' => 'camsi', 'DCAR_007092' => 'dca', 'DCAR_009562' => 'dca', 'DCAR_009563' => 'dca', 'DCAR_009566' => 'dca', 'DCAR_012858' => 'dca', 'DCAR_018007' => 'dca', 'DCAR_021913' => 'dca', 'DCAR_021914' => 'dca', 'Dinv15305' => 'din', 'Dinv15996' => 'din', 'Dinv24863' => 'din', 'Dinv44858' => 'din', 'Duzib052G0393' => 'dzi', 'Duzib248G0868' => 'dzi', 'Duzib248G1000' => 'dzi', 'ECA232G4048' => 'eca', 'ECA232G4484' => 'eca', 'ECA233G2320' => 'eca', 'ECA234G2749' => 'eca', 'ECA246G0922' => 'eca', 'ECA246G3273' => 'eca', 'EL10Ac1g01055' => 'bvu', 'EL10Ac6g13669' => 'bvu', 'Eucgr.F02147' => 'egr', 'Eucgr.H02612' => 'egr', 'FAN04G0518' => 'fan', 'FAN07G2035' => 'fan', 'FAN08G0616' => 'fan', 'FAN12G1507' => 'fan', 'FAN13G3173' => 'fan', 'FAN15G0696' => 'fan', 'FAN17G1642' => 'fan', 'FAN18G2083' => 'fan', 'FAN20G2933' => 'fan', 'FAN22G1387' => 'fan', 'FAN24G0423' => 'fan', 'FvH4_2g11700' => 'fve', 'FvH4_3g25421' => 'fve', 'FvH4_4g34560' => 'fve', 'FvH4_5g35390' => 'fve', 'Glyma.02G214000' => 'gma', 'Glyma.02G214100' => 'gma', 'Glyma.04G093800' => 'gma', 'Glyma.06G095600' => 'gma', 'Glyma.08G287700' => 'gma', 'Glyma.08G287800' => 'gma', 'Glyma.12G161850' => 'gma', 'Glyma.13G256800' => 'gma', 'Glyma.15G058100' => 'gma', 'Glyma.18G137700' => 'gma', 'Glyma.18G280300' => 'gma', 'Glyma.18G281500' => 'gma', 'Glyma.18G281600' => 'gma', 'Glyma.18G281700' => 'gma', 'Gohir.A01G132400' => 'ghi', 'Gohir.A03G177400' => 'ghi', 'Gohir.A04G115400' => 'ghi', 'Gohir.A04G135200' => 'ghi', 'Gohir.A05G219700' => 'ghi', 'Gohir.D01G117200' => 'ghi', 'Gohir.D02G201100' => 'ghi', 'Gohir.D04G156900' => 'ghi', 'Gohir.D04G178300' => 'ghi', 'Gohir.D05G222200' => 'ghi', 'Gorai.002G142500' => 'gra', 'Gorai.005G225700' => 'gra', 'Gorai.009G229600' => 'gra', 'Gorai.012G143900' => 'gra', 'Gorai.012G171400' => 'gra', 'GSVIVG01009172001' => 'vvi', 'GSVIVG01009173001' => 'vvi', 'GSVIVG01020234001' => 'vvi', 'GSVIVG01020235001' => 'vvi', 'HanXRQChr03g0063601' => 'han', 'HanXRQChr03g0065741' => 'han', 'HanXRQChr05g0157911' => 'han', 'HanXRQChr05g0163371' => 'han', 'HanXRQChr10g0289961' => 'han', 'HanXRQChr12g0368581' => 'han', 'HanXRQChr15g0484871' => 'han', 'HanXRQChr15g0490121' => 'han', 'Haze_12172' => 'cav', 'Haze_22451' => 'cav', 'Hma1.2p1_0010F.1_g006660' => 'hma', 'Hma1.2p1_0125F.1_g058890' => 'hma', 'HPP92_006224' => 'vpl', 'HPP92_008297' => 'vpl', 'HPP92_008298' => 'vpl', 'HPP92_020276' => 'vpl', 'HPP92_024212' => 'vpl', 'HPP92_027860' => 'vpl', 'Hund16858' => 'sun', 'Hund25343' => 'sun', 'Hund27020' => 'sun', 'Hund27770' => 'sun', 'Hund27774' => 'sun', 'Lalb_Chr08g0242481' => 'lal', 'Lalb_Chr09g0335011' => 'lal', 'Lalb_Chr11g0065021' => 'lal', 'Lalb_Chr18g0060411' => 'lal', 'Lj1g0015973' => 'lja', 'Lj4A718G40' => 'lonja', 'Lj4A737G51' => 'lonja', 'Lj4g0026951' => 'lja', 'Lj5A230G42' => 'lonja', 'Lj5A230G43' => 'lonja', 'Lj5A230T38' => 'lonja', 'Lj6g0027662' => 'lja', 'LjContig00408g0003702' => 'lja', 'Lsat_1_v5_gn_1_8661' => 'lsa', 'Lsat_1_v5_gn_1_98460' => 'lsa', 'Lsat_1_v5_gn_2_62680' => 'lsa', 'Lsat_1_v5_gn_3_45040' => 'lsa', 'Lsat_1_v5_gn_3_48100' => 'lsa', 'Lsat_1_v5_gn_3_95181' => 'lsa', 'Lsat_1_v5_gn_4_183321' => 'lsa', 'Lsat_1_v5_gn_5_109800' => 'lsa', 'Lsat_1_v5_gn_6_105041' => 'lsa', 'Lsat_1_v5_gn_6_56301' => 'lsa', 'Lsat_1_v5_gn_7_76281' => 'lsa', 'Lsat_1_v5_gn_8_157321' => 'lsa', 'Lsat_1_v5_gn_9_75061' => 'lsa', 'Lsat_1_v5_gn_9_77261' => 'lsa', 'Lsat_1_v5_gn_9_81600' => 'lsa', 'Manes.02G145000' => 'mes', 'Manes.07G038300' => 'mes', 'Manes.10G098700' => 'mes', 'Manes.12G029500' => 'mes', 'Manes.13G030900' => 'mes', 'Manes.18G059001' => 'mes', 'Mapoly0025s0054' => 'mpo', 'MBI01_g24502_MAGBIO' => 'mbi', 'MBI01_g42165_MAGBIO' => 'mbi', 'MBI02_g05218_MAGBIO' => 'mbi', 'MBI02_g18696_MAGBIO' => 'mbi', 'MBI02_g18697_MAGBIO' => 'mbi', 'MBI02_g18698_MAGBIO' => 'mbi', 'MBI02_g25595_MAGBIO' => 'mbi', 'MBI07_g34624_MAGBIO' => 'mbi', 'MBI16_g27584_MAGBIO' => 'mbi', 'MBI16_g36056_MAGBIO' => 'mbi', 'MBI18_g28166_MAGBIO' => 'mbi', 'MD08G1197400' => 'mdo', 'MD13G1091500' => 'mdo', 'MD15G1385000' => 'mdo', 'Medtr2g009580' => 'mtr', 'Medtr3g100390' => 'mtr', 'Medtr5g066230' => 'mtr', 'Medtr5g066240' => 'mtr', 'Medtr5g066530' => 'mtr', 'Medtr8g064370' => 'mtr', 'Medtr8g064470' => 'mtr', 'MELO3C011091.2' => 'cme', 'MELO3C012000.2' => 'cme', 'MELO3C018604.2' => 'cme', 'Migut.B00556' => 'egut', 'Migut.D01607' => 'egut', 'Migut.L01018' => 'egut', 'Migut.L01409' => 'egut', 'Migut.N02858' => 'egut', 'MSTRG.22177' => 'ama', 'MSTRG.24428' => 'ama', 'MSTRG.597' => 'ama', 'MSTRG.7894' => 'ama', 'Nitab4.5_0000034g0260' => 'nta', 'Nitab4.5_0000034g0270' => 'nta', 'Nitab4.5_0000113g0260' => 'nta', 'Nitab4.5_0000159g0110' => 'nta', 'Nitab4.5_0000531g0050' => 'nta', 'Nitab4.5_0000706g0010' => 'nta', 'Nitab4.5_0001026g0030' => 'nta', 'Nitab4.5_0001026g0040' => 'nta', 'Nitab4.5_0002579g0090' => 'nta', 'Nitab4.5_0004636g0020' => 'nta', 'Nn1g05565' => 'nnu', 'Nn4g22805' => 'nnu', 'Nn5g29887' => 'nnu', 'Oeu010529.1' => 'oeu', 'Oeu024827.1' => 'oeu', 'Oeu025935.3' => 'oeu', 'Oeu029680.1' => 'oeu', 'Oeu032041.1' => 'oeu', 'Oeu034571.1' => 'oeu', 'Oeu034572.1' => 'oeu', 'Oeu041818.1' => 'oeu', 'Oeu056395.2' => 'oeu', 'Os01g0738100' => 'osa', 'Os05g0207900' => 'osa', 'Os06g0487900' => 'osa', 'Os12g0606900' => 'osa', 'Peaxi162Scf00299g00715' => 'pax', 'Peaxi162Scf00299g00720' => 'pax', 'Peaxi162Scf00338g00116' => 'pax', 'Peaxi162Scf00495g00216' => 'pax', 'PGR031G1992' => 'pgr', 'PGR119G2170' => 'pgr', 'PGSC0003DMG400006817' => 'stu', 'PGSC0003DMG400023378' => 'stu', 'PGSC0003DMG400030989' => 'stu', 'PGSC0003DMG400033572' => 'stu', 'PGSC0003DMG401009214' => 'stu', 'PGSC0003DMG402009214' => 'stu', 'PGSC0003DMG402009344' => 'stu', 'Phvul.003G052200' => 'pvu', 'Phvul.006G202100' => 'pvu', 'Phvul.009G037600' => 'pvu', 'Potri.002G105700' => 'ptr', 'Potri.005G155600' => 'ptr', 'Potri.007G115400' => 'ptr', 'Potri.010G040600' => 'ptr', 'Potri.017G044000' => 'ptr', 'Pp3c15_7620' => 'ppa', 'Pp3c17_2400' => 'ppa', 'Pp3c25_3200' => 'ppa', 'Pp3c25_7310' => 'ppa', 'Pp3c5_19870' => 'ppa', 'Pp3c9_4420' => 'ppa', 'Pp3c9_9780' => 'ppa', 'Pp3c9_9860' => 'ppa', 'PRCOL_00000994' => 'pco', 'Prupe.1G254600' => 'ppe', 'Prupe.6G149300' => 'ppe', 'Prupe.8G069500' => 'ppe', 'Psat0s1668g0040' => 'psa', 'Psat1g095800' => 'psa', 'Psat1g215560' => 'psa', 'Psat2g064720' => 'psa', 'Psat4g125280' => 'psa', 'Psat5g046880' => 'psa', 'PSO063G2616' => 'pso', 'PSO063G4088' => 'pso', 'PSO170G5589' => 'pso', 'PSO210G3238' => 'pso', 'PSO541G4975' => 'pso', 'PSO675G2554' => 'pso', 'PSO832G2131' => 'pso', 'QL01p018445' => 'qlo', 'QL03p061415' => 'qlo', 'QL09p017743' => 'qlo', 'RcHm_v2.0_Chr3g0455541' => 'rch', 'RcHm_v2.0_Chr4g0443941' => 'rch', 'RcHm_v2.0_Chr6g0271021' => 'rch', 'RcHm_v2.0_Chr7g0236781' => 'rch', 'Rhsim07G0211800' => 'rsi', 'Rhsim12G0121000' => 'rsi', 'Sabra02G0083000' => 'sbr', 'Sabra07G0094200' => 'sbr', 'Sabra10G0026500' => 'sbr', 'Sabra17G0029900' => 'sbr', 'Sc01g0001150' => 'sci', 'Sc11g0001210' => 'sci', 'Sed0002698' => 'sed', 'Sed0011755' => 'sed', 'Sed0021630' => 'sed', 'Sed0022127' => 'sed', 'SEGI_02443' => 'sgi', 'SEGI_12549' => 'sgi', 'SEGI_13379' => 'sgi', 'SEGI_20117' => 'sgi', 'SEGI_23287' => 'sgi', 'SEGI_36476' => 'sgi', 'SGA_v2.0_scaffold165G38250' => 'sas', 'SGA_v2.0_scaffold48G17832' => 'sas', 'SGA_v2.0_scaffold83G26374' => 'sas', 'SGA_v2.0_scaffold8G04226' => 'sas', 'SGA_v2.0_scaffold8G04227' => 'sas', 'SHI27221' => 'shi', 'SMO347G0330' => 'smo', 'SMO361G0085' => 'smo', 'SMO367G0188' => 'smo', 'Solyc01g105820.3' => 'sly', 'Solyc04g026200.3' => 'sly', 'Solyc04g026220.4' => 'sly', 'Solyc05g005630.4' => 'sly', 'Solyc11g017040.2' => 'sly', 'Solyc11g017060.2' => 'sly', 'Sopen00g006460' => 'spe', 'Sopen01g048280' => 'spe', 'Sopen04g014190' => 'spe', 'Sopen04g014200' => 'spe', 'Sopen04g014280' => 'spe', 'Sopen05g001630' => 'spe', 'Sopen11g009030' => 'spe', 'Sopen11g009050' => 'spe', 'Sp1g08320' => 'spa', 'Sp1g09220' => 'spa', 'Sp2g04460' => 'spa', 'Sp7g31340' => 'spa', 'SpUn0106_0010' => 'spa', 'TAR374G1183' => 'tar', 'TAR381G0500' => 'tar', 'TAR381G1516' => 'tar', 'TAR625G0946' => 'tar', 'THA.LOC104807180' => 'tha', 'THA.LOC104816798' => 'tha', 'THA.LOC104820191' => 'tha', 'THA.LOC104823662' => 'tha', 'Thecc.02G129400' => 'tca', 'Thecc.02G248100' => 'tca', 'Thecc.08G070600' => 'tca', 'Thhalv10006645m.g' => 'esa', 'Thhalv10007260m.g' => 'esa', 'Thhalv10023376m.g' => 'esa', 'Thhalv10024447m.g' => 'esa', 'TPR.G12734' => 'tpr', 'TPR.G13778' => 'tpr', 'TPR.G32100' => 'tpr', 'TPR.G34572' => 'tpr', 'TPR.G36050' => 'tpr', 'TPR.G39555' => 'tpr', 'TPR.G6330' => 'tpr', 'TPR.G6333' => 'tpr', 'TPR.G9503' => 'tpr', 'TWI12G0821' => 'twi', 'TWI18G1467' => 'twi', 'TWI56G0043' => 'twi', 'TWI59G0076' => 'twi', 'unitig_26.g10341' => 'ugi', 'unitig_744.g24188' => 'ugi', 'unitig_8.g4849' => 'ugi', 'unitig_8.g4850' => 'ugi', 'vmacro04653' => 'vma', 'vmacro04654' => 'vma', 'vmacro16254' => 'vma', 'VMungo0251G2116' => 'vmu', 'VMungo0540G0648' => 'vmu', 'VMungo1309G1057' => 'vmu', 'Zm00001eb031350' => 'zma', 'Zm00001eb153850' => 'zma', 'Zm00001eb208510' => 'zma', 'Zm00001eb367170' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001292' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001292' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001292' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001292' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001292', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '485', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04700' => 'bna', 'A02p26940' => 'bna', 'A06p06410' => 'bna', 'A06p07320' => 'bna', 'A06p07350' => 'bna', 'A08p34390' => 'bna', 'A09p17630' => 'bna', 'Aa31LG1G4360' => 'aar', 'Aa31LG1G5260' => 'aar', 'Aa31LG2G10070' => 'aar', 'Aa31LG2G10100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.75' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2545' => 'aag', 'Actinidia00305' => 'ach', 'Actinidia01160' => 'ach', 'Actinidia13513' => 'ach', 'Actinidia15043' => 'ach', 'Actinidia19631' => 'ach', 'Actinidia29624' => 'ach', 'Ah.02g129890' => 'amhyb', 'Ah.02g129900' => 'amhyb', 'Ah.03g132660' => 'amhyb', 'Ah.05g170840' => 'amhyb', 'AL1G20280' => 'aly', 'AL1G21390' => 'aly', 'AL2G16440' => 'aly', 'AL7G17890' => 'aly', 'Aqoxy3G02988' => 'aox', 'Aqoxy5G04000' => 'aox', 'Aqoxy6G00877' => 'aox', 'arahy.Tifrunner.gnm1.ann1.31UHS4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V6D2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72ZBT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK27YN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4Q9CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYF69H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAFC77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95VYD' => 'arhy', 'AT1G09730' => 'ath', 'AT1G10570' => 'ath', 'AT1G60220' => 'ath', 'AT2G10625' => 'ath', 'AT4G33620' => 'ath', 'ATR0730G146' => 'atr', 'ATR0767G167' => 'atr', 'ATR0824G075' => 'atr', 'Atru.chr11.2015' => 'acertr', 'Atru.chr13.1015' => 'acertr', 'Atru.chr13.1016' => 'acertr', 'Atru.chr6.1255' => 'acertr', 'AUR62005372' => 'cqu', 'AUR62014034' => 'cqu', 'AUR62019044' => 'cqu', 'AUR62027883' => 'cqu', 'AUR62027884' => 'cqu', 'BcaB07g31205' => 'bca', 'BcaC02g09016' => 'bca', 'BcaC02g09020' => 'bca', 'BcaC04g22220' => 'bca', 'BcaC05g24868' => 'bca', 'BcaC05g24936' => 'bca', 'BcaC09g52173' => 'bca', 'BcaNung06983' => 'bca', 'BcaNung06984' => 'bca', 'BolC1t00491H' => 'bol', 'BolC4t25507H' => 'bol', 'BolC4t25531H' => 'bol', 'BolC5t29532H' => 'bol', 'BolC5t29630H' => 'bol', 'BolC5t29631H' => 'bol', 'BolC8t48942H' => 'bol', 'BolC9t55101H' => 'bol', 'BraA01t00453Z' => 'bra', 'BraA02t07707Z' => 'bra', 'BraA06t23852Z' => 'bra', 'BraA06t23937Z' => 'bra', 'BraA08t35351Z' => 'bra', 'BraA09t37393Z' => 'bra', 'C01p05090' => 'bna', 'C04p39420' => 'bna', 'C04p39640' => 'bna', 'C05p07810' => 'bna', 'C05p08830' => 'bna', 'C08p13140' => 'bna', 'C09p21960' => 'bna', 'CAN.G376.11' => 'can', 'CAN.G523.11' => 'can', 'CAN.G60.9' => 'can', 'CAN.G61.18' => 'can', 'CANSAT01G2663' => 'cansat', 'CANSAT25G2063' => 'cansat', 'CANSAT54G0160' => 'cansat', 'CARHR009700' => 'chi', 'CARHR010730' => 'chi', 'CARHR052740' => 'chi', 'CARHR056550' => 'chi', 'CARHR221040' => 'chi', 'CARHR241710' => 'chi', 'Carub.0001s0907' => 'cru', 'Carub.0001s1001' => 'cru', 'Carub.0002s0503' => 'cru', 'Carub.0007s0682' => 'cru', 'Ca_00162_v3' => 'car', 'Ca_11800_v3' => 'car', 'Ca_16000_v3' => 'car', 'Ca_22729_v3' => 'car', 'Ca_30959_v3' => 'car', 'CBR_g17607' => 'cbr', 'CBR_g31692' => 'cbr', 'CBR_g324' => 'cbr', 'Cc00_g07670' => 'ccan', 'Cc02_g20940' => 'ccan', 'Cc11_g14630' => 'ccan', 'CDE01G0247' => 'cde', 'CDE01G0387' => 'cde', 'CDE02G3610' => 'cde', 'CDE04G0851' => 'cde', 'CDE04G1081' => 'cde', 'CDE04G3345' => 'cde', 'CDE06G2008' => 'cde', 'Cfa009140' => 'cfa', 'Cfa013790' => 'cfa', 'Cfa013791' => 'cfa', 'Ciclev10000201m.g' => 'ccl', 'Ciclev10029286m.g' => 'ccl', 'Ciclev10031081m.g' => 'ccl', 'CiPaw.05G150600' => 'cil', 'CiPaw.07G165900' => 'cil', 'CiPaw.08G055500' => 'cil', 'ClCG05G025290' => 'cla', 'ClCG08G011690' => 'cla', 'ClCG09G016070' => 'cla', 'COL.COLO4_32386' => 'col', 'COL.COLO4_35242' => 'col', 'COL.COLO4_36969' => 'col', 'Cpa.g.sc21.12' => 'cpa', 'Cpa.g.sc21.13' => 'cpa', 'Cpa.g.sc42.3' => 'cpa', 'Cpa.g.sc42.5' => 'cpa', 'Cpa.g.sc69.20' => 'cpa', 'Cpa.g.sc69.25' => 'cpa', 'Cre06.g278197' => 'cre', 'CsaV3_2G030290' => 'csa', 'CsaV3_5G031600' => 'csa', 'CsaV3_7G006900' => 'csa', 'CSS0010703' => 'camsi', 'CSS0024382' => 'camsi', 'CSS0029667' => 'camsi', 'CSS0039925' => 'camsi', 'CSS0046510' => 'camsi', 'CSS0049204' => 'camsi', 'DCAR_007092' => 'dca', 'DCAR_009562' => 'dca', 'DCAR_009563' => 'dca', 'DCAR_009566' => 'dca', 'DCAR_012858' => 'dca', 'DCAR_018007' => 'dca', 'DCAR_021913' => 'dca', 'DCAR_021914' => 'dca', 'Dinv15305' => 'din', 'Dinv15996' => 'din', 'Dinv24863' => 'din', 'Dinv44858' => 'din', 'Duzib052G0393' => 'dzi', 'Duzib248G0868' => 'dzi', 'Duzib248G1000' => 'dzi', 'ECA232G4048' => 'eca', 'ECA232G4484' => 'eca', 'ECA233G2320' => 'eca', 'ECA234G2749' => 'eca', 'ECA246G0922' => 'eca', 'ECA246G3273' => 'eca', 'EL10Ac1g01055' => 'bvu', 'EL10Ac6g13669' => 'bvu', 'Eucgr.F02147' => 'egr', 'Eucgr.H02612' => 'egr', 'FAN04G0518' => 'fan', 'FAN07G2035' => 'fan', 'FAN08G0616' => 'fan', 'FAN12G1507' => 'fan', 'FAN13G3173' => 'fan', 'FAN15G0696' => 'fan', 'FAN17G1642' => 'fan', 'FAN18G2083' => 'fan', 'FAN20G2933' => 'fan', 'FAN22G1387' => 'fan', 'FAN24G0423' => 'fan', 'FvH4_2g11700' => 'fve', 'FvH4_3g25421' => 'fve', 'FvH4_4g34560' => 'fve', 'FvH4_5g35390' => 'fve', 'Glyma.02G214000' => 'gma', 'Glyma.02G214100' => 'gma', 'Glyma.04G093800' => 'gma', 'Glyma.06G095600' => 'gma', 'Glyma.08G287700' => 'gma', 'Glyma.08G287800' => 'gma', 'Glyma.12G161850' => 'gma', 'Glyma.13G256800' => 'gma', 'Glyma.15G058100' => 'gma', 'Glyma.18G137700' => 'gma', 'Glyma.18G280300' => 'gma', 'Glyma.18G281500' => 'gma', 'Glyma.18G281600' => 'gma', 'Glyma.18G281700' => 'gma', 'Gohir.A01G132400' => 'ghi', 'Gohir.A03G177400' => 'ghi', 'Gohir.A04G115400' => 'ghi', 'Gohir.A04G135200' => 'ghi', 'Gohir.A05G219700' => 'ghi', 'Gohir.D01G117200' => 'ghi', 'Gohir.D02G201100' => 'ghi', 'Gohir.D04G156900' => 'ghi', 'Gohir.D04G178300' => 'ghi', 'Gohir.D05G222200' => 'ghi', 'Gorai.002G142500' => 'gra', 'Gorai.005G225700' => 'gra', 'Gorai.009G229600' => 'gra', 'Gorai.012G143900' => 'gra', 'Gorai.012G171400' => 'gra', 'GSVIVG01009172001' => 'vvi', 'GSVIVG01009173001' => 'vvi', 'GSVIVG01020234001' => 'vvi', 'GSVIVG01020235001' => 'vvi', 'HanXRQChr03g0063601' => 'han', 'HanXRQChr03g0065741' => 'han', 'HanXRQChr05g0157911' => 'han', 'HanXRQChr05g0163371' => 'han', 'HanXRQChr10g0289961' => 'han', 'HanXRQChr12g0368581' => 'han', 'HanXRQChr15g0484871' => 'han', 'HanXRQChr15g0490121' => 'han', 'Haze_12172' => 'cav', 'Haze_22451' => 'cav', 'Hma1.2p1_0010F.1_g006660' => 'hma', 'Hma1.2p1_0125F.1_g058890' => 'hma', 'HPP92_006224' => 'vpl', 'HPP92_008297' => 'vpl', 'HPP92_008298' => 'vpl', 'HPP92_020276' => 'vpl', 'HPP92_024212' => 'vpl', 'HPP92_027860' => 'vpl', 'Hund16858' => 'sun', 'Hund25343' => 'sun', 'Hund27020' => 'sun', 'Hund27770' => 'sun', 'Hund27774' => 'sun', 'Lalb_Chr08g0242481' => 'lal', 'Lalb_Chr09g0335011' => 'lal', 'Lalb_Chr11g0065021' => 'lal', 'Lalb_Chr18g0060411' => 'lal', 'Lj1g0015973' => 'lja', 'Lj4A718G40' => 'lonja', 'Lj4A737G51' => 'lonja', 'Lj4g0026951' => 'lja', 'Lj5A230G42' => 'lonja', 'Lj5A230G43' => 'lonja', 'Lj5A230T38' => 'lonja', 'Lj6g0027662' => 'lja', 'LjContig00408g0003702' => 'lja', 'Lsat_1_v5_gn_1_8661' => 'lsa', 'Lsat_1_v5_gn_1_98460' => 'lsa', 'Lsat_1_v5_gn_2_62680' => 'lsa', 'Lsat_1_v5_gn_3_45040' => 'lsa', 'Lsat_1_v5_gn_3_48100' => 'lsa', 'Lsat_1_v5_gn_3_95181' => 'lsa', 'Lsat_1_v5_gn_4_183321' => 'lsa', 'Lsat_1_v5_gn_5_109800' => 'lsa', 'Lsat_1_v5_gn_6_105041' => 'lsa', 'Lsat_1_v5_gn_6_56301' => 'lsa', 'Lsat_1_v5_gn_7_76281' => 'lsa', 'Lsat_1_v5_gn_8_157321' => 'lsa', 'Lsat_1_v5_gn_9_75061' => 'lsa', 'Lsat_1_v5_gn_9_77261' => 'lsa', 'Lsat_1_v5_gn_9_81600' => 'lsa', 'Manes.02G145000' => 'mes', 'Manes.07G038300' => 'mes', 'Manes.10G098700' => 'mes', 'Manes.12G029500' => 'mes', 'Manes.13G030900' => 'mes', 'Manes.18G059001' => 'mes', 'Mapoly0025s0054' => 'mpo', 'MBI01_g24502_MAGBIO' => 'mbi', 'MBI01_g42165_MAGBIO' => 'mbi', 'MBI02_g05218_MAGBIO' => 'mbi', 'MBI02_g18696_MAGBIO' => 'mbi', 'MBI02_g18697_MAGBIO' => 'mbi', 'MBI02_g18698_MAGBIO' => 'mbi', 'MBI02_g25595_MAGBIO' => 'mbi', 'MBI07_g34624_MAGBIO' => 'mbi', 'MBI16_g27584_MAGBIO' => 'mbi', 'MBI16_g36056_MAGBIO' => 'mbi', 'MBI18_g28166_MAGBIO' => 'mbi', 'MD08G1197400' => 'mdo', 'MD13G1091500' => 'mdo', 'MD15G1385000' => 'mdo', 'Medtr2g009580' => 'mtr', 'Medtr3g100390' => 'mtr', 'Medtr5g066230' => 'mtr', 'Medtr5g066240' => 'mtr', 'Medtr5g066530' => 'mtr', 'Medtr8g064370' => 'mtr', 'Medtr8g064470' => 'mtr', 'MELO3C011091.2' => 'cme', 'MELO3C012000.2' => 'cme', 'MELO3C018604.2' => 'cme', 'Migut.B00556' => 'egut', 'Migut.D01607' => 'egut', 'Migut.L01018' => 'egut', 'Migut.L01409' => 'egut', 'Migut.N02858' => 'egut', 'MSTRG.22177' => 'ama', 'MSTRG.24428' => 'ama', 'MSTRG.597' => 'ama', 'MSTRG.7894' => 'ama', 'Nitab4.5_0000034g0260' => 'nta', 'Nitab4.5_0000034g0270' => 'nta', 'Nitab4.5_0000113g0260' => 'nta', 'Nitab4.5_0000159g0110' => 'nta', 'Nitab4.5_0000531g0050' => 'nta', 'Nitab4.5_0000706g0010' => 'nta', 'Nitab4.5_0001026g0030' => 'nta', 'Nitab4.5_0001026g0040' => 'nta', 'Nitab4.5_0002579g0090' => 'nta', 'Nitab4.5_0004636g0020' => 'nta', 'Nn1g05565' => 'nnu', 'Nn4g22805' => 'nnu', 'Nn5g29887' => 'nnu', 'Oeu010529.1' => 'oeu', 'Oeu024827.1' => 'oeu', 'Oeu025935.3' => 'oeu', 'Oeu029680.1' => 'oeu', 'Oeu032041.1' => 'oeu', 'Oeu034571.1' => 'oeu', 'Oeu034572.1' => 'oeu', 'Oeu041818.1' => 'oeu', 'Oeu056395.2' => 'oeu', 'Os01g0738100' => 'osa', 'Os05g0207900' => 'osa', 'Os06g0487900' => 'osa', 'Os12g0606900' => 'osa', 'Peaxi162Scf00299g00715' => 'pax', 'Peaxi162Scf00299g00720' => 'pax', 'Peaxi162Scf00338g00116' => 'pax', 'Peaxi162Scf00495g00216' => 'pax', 'PGR031G1992' => 'pgr', 'PGR119G2170' => 'pgr', 'PGSC0003DMG400006817' => 'stu', 'PGSC0003DMG400023378' => 'stu', 'PGSC0003DMG400030989' => 'stu', 'PGSC0003DMG400033572' => 'stu', 'PGSC0003DMG401009214' => 'stu', 'PGSC0003DMG402009214' => 'stu', 'PGSC0003DMG402009344' => 'stu', 'Phvul.003G052200' => 'pvu', 'Phvul.006G202100' => 'pvu', 'Phvul.009G037600' => 'pvu', 'Potri.002G105700' => 'ptr', 'Potri.005G155600' => 'ptr', 'Potri.007G115400' => 'ptr', 'Potri.010G040600' => 'ptr', 'Potri.017G044000' => 'ptr', 'Pp3c15_7620' => 'ppa', 'Pp3c17_2400' => 'ppa', 'Pp3c25_3200' => 'ppa', 'Pp3c25_7310' => 'ppa', 'Pp3c5_19870' => 'ppa', 'Pp3c9_4420' => 'ppa', 'Pp3c9_9780' => 'ppa', 'Pp3c9_9860' => 'ppa', 'PRCOL_00000994' => 'pco', 'Prupe.1G254600' => 'ppe', 'Prupe.6G149300' => 'ppe', 'Prupe.8G069500' => 'ppe', 'Psat0s1668g0040' => 'psa', 'Psat1g095800' => 'psa', 'Psat1g215560' => 'psa', 'Psat2g064720' => 'psa', 'Psat4g125280' => 'psa', 'Psat5g046880' => 'psa', 'PSO063G2616' => 'pso', 'PSO063G4088' => 'pso', 'PSO170G5589' => 'pso', 'PSO210G3238' => 'pso', 'PSO541G4975' => 'pso', 'PSO675G2554' => 'pso', 'PSO832G2131' => 'pso', 'QL01p018445' => 'qlo', 'QL03p061415' => 'qlo', 'QL09p017743' => 'qlo', 'RcHm_v2.0_Chr3g0455541' => 'rch', 'RcHm_v2.0_Chr4g0443941' => 'rch', 'RcHm_v2.0_Chr6g0271021' => 'rch', 'RcHm_v2.0_Chr7g0236781' => 'rch', 'Rhsim07G0211800' => 'rsi', 'Rhsim12G0121000' => 'rsi', 'Sabra02G0083000' => 'sbr', 'Sabra07G0094200' => 'sbr', 'Sabra10G0026500' => 'sbr', 'Sabra17G0029900' => 'sbr', 'Sc01g0001150' => 'sci', 'Sc11g0001210' => 'sci', 'Sed0002698' => 'sed', 'Sed0011755' => 'sed', 'Sed0021630' => 'sed', 'Sed0022127' => 'sed', 'SEGI_02443' => 'sgi', 'SEGI_12549' => 'sgi', 'SEGI_13379' => 'sgi', 'SEGI_20117' => 'sgi', 'SEGI_23287' => 'sgi', 'SEGI_36476' => 'sgi', 'SGA_v2.0_scaffold165G38250' => 'sas', 'SGA_v2.0_scaffold48G17832' => 'sas', 'SGA_v2.0_scaffold83G26374' => 'sas', 'SGA_v2.0_scaffold8G04226' => 'sas', 'SGA_v2.0_scaffold8G04227' => 'sas', 'SHI27221' => 'shi', 'SMO347G0330' => 'smo', 'SMO361G0085' => 'smo', 'SMO367G0188' => 'smo', 'Solyc01g105820.3' => 'sly', 'Solyc04g026200.3' => 'sly', 'Solyc04g026220.4' => 'sly', 'Solyc05g005630.4' => 'sly', 'Solyc11g017040.2' => 'sly', 'Solyc11g017060.2' => 'sly', 'Sopen00g006460' => 'spe', 'Sopen01g048280' => 'spe', 'Sopen04g014190' => 'spe', 'Sopen04g014200' => 'spe', 'Sopen04g014280' => 'spe', 'Sopen05g001630' => 'spe', 'Sopen11g009030' => 'spe', 'Sopen11g009050' => 'spe', 'Sp1g08320' => 'spa', 'Sp1g09220' => 'spa', 'Sp2g04460' => 'spa', 'Sp7g31340' => 'spa', 'SpUn0106_0010' => 'spa', 'TAR374G1183' => 'tar', 'TAR381G0500' => 'tar', 'TAR381G1516' => 'tar', 'TAR625G0946' => 'tar', 'THA.LOC104807180' => 'tha', 'THA.LOC104816798' => 'tha', 'THA.LOC104820191' => 'tha', 'THA.LOC104823662' => 'tha', 'Thecc.02G129400' => 'tca', 'Thecc.02G248100' => 'tca', 'Thecc.08G070600' => 'tca', 'Thhalv10006645m.g' => 'esa', 'Thhalv10007260m.g' => 'esa', 'Thhalv10023376m.g' => 'esa', 'Thhalv10024447m.g' => 'esa', 'TPR.G12734' => 'tpr', 'TPR.G13778' => 'tpr', 'TPR.G32100' => 'tpr', 'TPR.G34572' => 'tpr', 'TPR.G36050' => 'tpr', 'TPR.G39555' => 'tpr', 'TPR.G6330' => 'tpr', 'TPR.G6333' => 'tpr', 'TPR.G9503' => 'tpr', 'TWI12G0821' => 'twi', 'TWI18G1467' => 'twi', 'TWI56G0043' => 'twi', 'TWI59G0076' => 'twi', 'unitig_26.g10341' => 'ugi', 'unitig_744.g24188' => 'ugi', 'unitig_8.g4849' => 'ugi', 'unitig_8.g4850' => 'ugi', 'vmacro04653' => 'vma', 'vmacro04654' => 'vma', 'vmacro16254' => 'vma', 'VMungo0251G2116' => 'vmu', 'VMungo0540G0648' => 'vmu', 'VMungo1309G1057' => 'vmu', 'Zm00001eb031350' => 'zma', 'Zm00001eb153850' => 'zma', 'Zm00001eb208510' => 'zma', 'Zm00001eb367170' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001292', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001292' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001292', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '485', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001292' ) ), 'genes' => array( 'A01p04700' => 'bna', 'A02p26940' => 'bna', 'A06p06410' => 'bna', 'A06p07320' => 'bna', 'A06p07350' => 'bna', 'A08p34390' => 'bna', 'A09p17630' => 'bna', 'Aa31LG1G4360' => 'aar', 'Aa31LG1G5260' => 'aar', 'Aa31LG2G10070' => 'aar', 'Aa31LG2G10100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.75' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2545' => 'aag', 'Actinidia00305' => 'ach', 'Actinidia01160' => 'ach', 'Actinidia13513' => 'ach', 'Actinidia15043' => 'ach', 'Actinidia19631' => 'ach', 'Actinidia29624' => 'ach', 'Ah.02g129890' => 'amhyb', 'Ah.02g129900' => 'amhyb', 'Ah.03g132660' => 'amhyb', 'Ah.05g170840' => 'amhyb', 'AL1G20280' => 'aly', 'AL1G21390' => 'aly', 'AL2G16440' => 'aly', 'AL7G17890' => 'aly', 'Aqoxy3G02988' => 'aox', 'Aqoxy5G04000' => 'aox', 'Aqoxy6G00877' => 'aox', 'arahy.Tifrunner.gnm1.ann1.31UHS4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V6D2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72ZBT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK27YN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4Q9CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYF69H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAFC77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95VYD' => 'arhy', 'AT1G09730' => 'ath', 'AT1G10570' => 'ath', 'AT1G60220' => 'ath', 'AT2G10625' => 'ath', 'AT4G33620' => 'ath', 'ATR0730G146' => 'atr', 'ATR0767G167' => 'atr', 'ATR0824G075' => 'atr', 'Atru.chr11.2015' => 'acertr', 'Atru.chr13.1015' => 'acertr', 'Atru.chr13.1016' => 'acertr', 'Atru.chr6.1255' => 'acertr', 'AUR62005372' => 'cqu', 'AUR62014034' => 'cqu', 'AUR62019044' => 'cqu', 'AUR62027883' => 'cqu', 'AUR62027884' => 'cqu', 'BcaB07g31205' => 'bca', 'BcaC02g09016' => 'bca', 'BcaC02g09020' => 'bca', 'BcaC04g22220' => 'bca', 'BcaC05g24868' => 'bca', 'BcaC05g24936' => 'bca', 'BcaC09g52173' => 'bca', 'BcaNung06983' => 'bca', 'BcaNung06984' => 'bca', 'BolC1t00491H' => 'bol', 'BolC4t25507H' => 'bol', 'BolC4t25531H' => 'bol', 'BolC5t29532H' => 'bol', 'BolC5t29630H' => 'bol', 'BolC5t29631H' => 'bol', 'BolC8t48942H' => 'bol', 'BolC9t55101H' => 'bol', 'BraA01t00453Z' => 'bra', 'BraA02t07707Z' => 'bra', 'BraA06t23852Z' => 'bra', 'BraA06t23937Z' => 'bra', 'BraA08t35351Z' => 'bra', 'BraA09t37393Z' => 'bra', 'C01p05090' => 'bna', 'C04p39420' => 'bna', 'C04p39640' => 'bna', 'C05p07810' => 'bna', 'C05p08830' => 'bna', 'C08p13140' => 'bna', 'C09p21960' => 'bna', 'CAN.G376.11' => 'can', 'CAN.G523.11' => 'can', 'CAN.G60.9' => 'can', 'CAN.G61.18' => 'can', 'CANSAT01G2663' => 'cansat', 'CANSAT25G2063' => 'cansat', 'CANSAT54G0160' => 'cansat', 'CARHR009700' => 'chi', 'CARHR010730' => 'chi', 'CARHR052740' => 'chi', 'CARHR056550' => 'chi', 'CARHR221040' => 'chi', 'CARHR241710' => 'chi', 'Carub.0001s0907' => 'cru', 'Carub.0001s1001' => 'cru', 'Carub.0002s0503' => 'cru', 'Carub.0007s0682' => 'cru', 'Ca_00162_v3' => 'car', 'Ca_11800_v3' => 'car', 'Ca_16000_v3' => 'car', 'Ca_22729_v3' => 'car', 'Ca_30959_v3' => 'car', 'CBR_g17607' => 'cbr', 'CBR_g31692' => 'cbr', 'CBR_g324' => 'cbr', 'Cc00_g07670' => 'ccan', 'Cc02_g20940' => 'ccan', 'Cc11_g14630' => 'ccan', 'CDE01G0247' => 'cde', 'CDE01G0387' => 'cde', 'CDE02G3610' => 'cde', 'CDE04G0851' => 'cde', 'CDE04G1081' => 'cde', 'CDE04G3345' => 'cde', 'CDE06G2008' => 'cde', 'Cfa009140' => 'cfa', 'Cfa013790' => 'cfa', 'Cfa013791' => 'cfa', 'Ciclev10000201m.g' => 'ccl', 'Ciclev10029286m.g' => 'ccl', 'Ciclev10031081m.g' => 'ccl', 'CiPaw.05G150600' => 'cil', 'CiPaw.07G165900' => 'cil', 'CiPaw.08G055500' => 'cil', 'ClCG05G025290' => 'cla', 'ClCG08G011690' => 'cla', 'ClCG09G016070' => 'cla', 'COL.COLO4_32386' => 'col', 'COL.COLO4_35242' => 'col', 'COL.COLO4_36969' => 'col', 'Cpa.g.sc21.12' => 'cpa', 'Cpa.g.sc21.13' => 'cpa', 'Cpa.g.sc42.3' => 'cpa', 'Cpa.g.sc42.5' => 'cpa', 'Cpa.g.sc69.20' => 'cpa', 'Cpa.g.sc69.25' => 'cpa', 'Cre06.g278197' => 'cre', 'CsaV3_2G030290' => 'csa', 'CsaV3_5G031600' => 'csa', 'CsaV3_7G006900' => 'csa', 'CSS0010703' => 'camsi', 'CSS0024382' => 'camsi', 'CSS0029667' => 'camsi', 'CSS0039925' => 'camsi', 'CSS0046510' => 'camsi', 'CSS0049204' => 'camsi', 'DCAR_007092' => 'dca', 'DCAR_009562' => 'dca', 'DCAR_009563' => 'dca', 'DCAR_009566' => 'dca', 'DCAR_012858' => 'dca', 'DCAR_018007' => 'dca', 'DCAR_021913' => 'dca', 'DCAR_021914' => 'dca', 'Dinv15305' => 'din', 'Dinv15996' => 'din', 'Dinv24863' => 'din', 'Dinv44858' => 'din', 'Duzib052G0393' => 'dzi', 'Duzib248G0868' => 'dzi', 'Duzib248G1000' => 'dzi', 'ECA232G4048' => 'eca', 'ECA232G4484' => 'eca', 'ECA233G2320' => 'eca', 'ECA234G2749' => 'eca', 'ECA246G0922' => 'eca', 'ECA246G3273' => 'eca', 'EL10Ac1g01055' => 'bvu', 'EL10Ac6g13669' => 'bvu', 'Eucgr.F02147' => 'egr', 'Eucgr.H02612' => 'egr', 'FAN04G0518' => 'fan', 'FAN07G2035' => 'fan', 'FAN08G0616' => 'fan', 'FAN12G1507' => 'fan', 'FAN13G3173' => 'fan', 'FAN15G0696' => 'fan', 'FAN17G1642' => 'fan', 'FAN18G2083' => 'fan', 'FAN20G2933' => 'fan', 'FAN22G1387' => 'fan', 'FAN24G0423' => 'fan', 'FvH4_2g11700' => 'fve', 'FvH4_3g25421' => 'fve', 'FvH4_4g34560' => 'fve', 'FvH4_5g35390' => 'fve', 'Glyma.02G214000' => 'gma', 'Glyma.02G214100' => 'gma', 'Glyma.04G093800' => 'gma', 'Glyma.06G095600' => 'gma', 'Glyma.08G287700' => 'gma', 'Glyma.08G287800' => 'gma', 'Glyma.12G161850' => 'gma', 'Glyma.13G256800' => 'gma', 'Glyma.15G058100' => 'gma', 'Glyma.18G137700' => 'gma', 'Glyma.18G280300' => 'gma', 'Glyma.18G281500' => 'gma', 'Glyma.18G281600' => 'gma', 'Glyma.18G281700' => 'gma', 'Gohir.A01G132400' => 'ghi', 'Gohir.A03G177400' => 'ghi', 'Gohir.A04G115400' => 'ghi', 'Gohir.A04G135200' => 'ghi', 'Gohir.A05G219700' => 'ghi', 'Gohir.D01G117200' => 'ghi', 'Gohir.D02G201100' => 'ghi', 'Gohir.D04G156900' => 'ghi', 'Gohir.D04G178300' => 'ghi', 'Gohir.D05G222200' => 'ghi', 'Gorai.002G142500' => 'gra', 'Gorai.005G225700' => 'gra', 'Gorai.009G229600' => 'gra', 'Gorai.012G143900' => 'gra', 'Gorai.012G171400' => 'gra', 'GSVIVG01009172001' => 'vvi', 'GSVIVG01009173001' => 'vvi', 'GSVIVG01020234001' => 'vvi', 'GSVIVG01020235001' => 'vvi', 'HanXRQChr03g0063601' => 'han', 'HanXRQChr03g0065741' => 'han', 'HanXRQChr05g0157911' => 'han', 'HanXRQChr05g0163371' => 'han', 'HanXRQChr10g0289961' => 'han', 'HanXRQChr12g0368581' => 'han', 'HanXRQChr15g0484871' => 'han', 'HanXRQChr15g0490121' => 'han', 'Haze_12172' => 'cav', 'Haze_22451' => 'cav', 'Hma1.2p1_0010F.1_g006660' => 'hma', 'Hma1.2p1_0125F.1_g058890' => 'hma', 'HPP92_006224' => 'vpl', 'HPP92_008297' => 'vpl', 'HPP92_008298' => 'vpl', 'HPP92_020276' => 'vpl', 'HPP92_024212' => 'vpl', 'HPP92_027860' => 'vpl', 'Hund16858' => 'sun', 'Hund25343' => 'sun', 'Hund27020' => 'sun', 'Hund27770' => 'sun', 'Hund27774' => 'sun', 'Lalb_Chr08g0242481' => 'lal', 'Lalb_Chr09g0335011' => 'lal', 'Lalb_Chr11g0065021' => 'lal', 'Lalb_Chr18g0060411' => 'lal', 'Lj1g0015973' => 'lja', 'Lj4A718G40' => 'lonja', 'Lj4A737G51' => 'lonja', 'Lj4g0026951' => 'lja', 'Lj5A230G42' => 'lonja', 'Lj5A230G43' => 'lonja', 'Lj5A230T38' => 'lonja', 'Lj6g0027662' => 'lja', 'LjContig00408g0003702' => 'lja', 'Lsat_1_v5_gn_1_8661' => 'lsa', 'Lsat_1_v5_gn_1_98460' => 'lsa', 'Lsat_1_v5_gn_2_62680' => 'lsa', 'Lsat_1_v5_gn_3_45040' => 'lsa', 'Lsat_1_v5_gn_3_48100' => 'lsa', 'Lsat_1_v5_gn_3_95181' => 'lsa', 'Lsat_1_v5_gn_4_183321' => 'lsa', 'Lsat_1_v5_gn_5_109800' => 'lsa', 'Lsat_1_v5_gn_6_105041' => 'lsa', 'Lsat_1_v5_gn_6_56301' => 'lsa', 'Lsat_1_v5_gn_7_76281' => 'lsa', 'Lsat_1_v5_gn_8_157321' => 'lsa', 'Lsat_1_v5_gn_9_75061' => 'lsa', 'Lsat_1_v5_gn_9_77261' => 'lsa', 'Lsat_1_v5_gn_9_81600' => 'lsa', 'Manes.02G145000' => 'mes', 'Manes.07G038300' => 'mes', 'Manes.10G098700' => 'mes', 'Manes.12G029500' => 'mes', 'Manes.13G030900' => 'mes', 'Manes.18G059001' => 'mes', 'Mapoly0025s0054' => 'mpo', 'MBI01_g24502_MAGBIO' => 'mbi', 'MBI01_g42165_MAGBIO' => 'mbi', 'MBI02_g05218_MAGBIO' => 'mbi', 'MBI02_g18696_MAGBIO' => 'mbi', 'MBI02_g18697_MAGBIO' => 'mbi', 'MBI02_g18698_MAGBIO' => 'mbi', 'MBI02_g25595_MAGBIO' => 'mbi', 'MBI07_g34624_MAGBIO' => 'mbi', 'MBI16_g27584_MAGBIO' => 'mbi', 'MBI16_g36056_MAGBIO' => 'mbi', 'MBI18_g28166_MAGBIO' => 'mbi', 'MD08G1197400' => 'mdo', 'MD13G1091500' => 'mdo', 'MD15G1385000' => 'mdo', 'Medtr2g009580' => 'mtr', 'Medtr3g100390' => 'mtr', 'Medtr5g066230' => 'mtr', 'Medtr5g066240' => 'mtr', 'Medtr5g066530' => 'mtr', 'Medtr8g064370' => 'mtr', 'Medtr8g064470' => 'mtr', 'MELO3C011091.2' => 'cme', 'MELO3C012000.2' => 'cme', 'MELO3C018604.2' => 'cme', 'Migut.B00556' => 'egut', 'Migut.D01607' => 'egut', 'Migut.L01018' => 'egut', 'Migut.L01409' => 'egut', 'Migut.N02858' => 'egut', 'MSTRG.22177' => 'ama', 'MSTRG.24428' => 'ama', 'MSTRG.597' => 'ama', 'MSTRG.7894' => 'ama', 'Nitab4.5_0000034g0260' => 'nta', 'Nitab4.5_0000034g0270' => 'nta', 'Nitab4.5_0000113g0260' => 'nta', 'Nitab4.5_0000159g0110' => 'nta', 'Nitab4.5_0000531g0050' => 'nta', 'Nitab4.5_0000706g0010' => 'nta', 'Nitab4.5_0001026g0030' => 'nta', 'Nitab4.5_0001026g0040' => 'nta', 'Nitab4.5_0002579g0090' => 'nta', 'Nitab4.5_0004636g0020' => 'nta', 'Nn1g05565' => 'nnu', 'Nn4g22805' => 'nnu', 'Nn5g29887' => 'nnu', 'Oeu010529.1' => 'oeu', 'Oeu024827.1' => 'oeu', 'Oeu025935.3' => 'oeu', 'Oeu029680.1' => 'oeu', 'Oeu032041.1' => 'oeu', 'Oeu034571.1' => 'oeu', 'Oeu034572.1' => 'oeu', 'Oeu041818.1' => 'oeu', 'Oeu056395.2' => 'oeu', 'Os01g0738100' => 'osa', 'Os05g0207900' => 'osa', 'Os06g0487900' => 'osa', 'Os12g0606900' => 'osa', 'Peaxi162Scf00299g00715' => 'pax', 'Peaxi162Scf00299g00720' => 'pax', 'Peaxi162Scf00338g00116' => 'pax', 'Peaxi162Scf00495g00216' => 'pax', 'PGR031G1992' => 'pgr', 'PGR119G2170' => 'pgr', 'PGSC0003DMG400006817' => 'stu', 'PGSC0003DMG400023378' => 'stu', 'PGSC0003DMG400030989' => 'stu', 'PGSC0003DMG400033572' => 'stu', 'PGSC0003DMG401009214' => 'stu', 'PGSC0003DMG402009214' => 'stu', 'PGSC0003DMG402009344' => 'stu', 'Phvul.003G052200' => 'pvu', 'Phvul.006G202100' => 'pvu', 'Phvul.009G037600' => 'pvu', 'Potri.002G105700' => 'ptr', 'Potri.005G155600' => 'ptr', 'Potri.007G115400' => 'ptr', 'Potri.010G040600' => 'ptr', 'Potri.017G044000' => 'ptr', 'Pp3c15_7620' => 'ppa', 'Pp3c17_2400' => 'ppa', 'Pp3c25_3200' => 'ppa', 'Pp3c25_7310' => 'ppa', 'Pp3c5_19870' => 'ppa', 'Pp3c9_4420' => 'ppa', 'Pp3c9_9780' => 'ppa', 'Pp3c9_9860' => 'ppa', 'PRCOL_00000994' => 'pco', 'Prupe.1G254600' => 'ppe', 'Prupe.6G149300' => 'ppe', 'Prupe.8G069500' => 'ppe', 'Psat0s1668g0040' => 'psa', 'Psat1g095800' => 'psa', 'Psat1g215560' => 'psa', 'Psat2g064720' => 'psa', 'Psat4g125280' => 'psa', 'Psat5g046880' => 'psa', 'PSO063G2616' => 'pso', 'PSO063G4088' => 'pso', 'PSO170G5589' => 'pso', 'PSO210G3238' => 'pso', 'PSO541G4975' => 'pso', 'PSO675G2554' => 'pso', 'PSO832G2131' => 'pso', 'QL01p018445' => 'qlo', 'QL03p061415' => 'qlo', 'QL09p017743' => 'qlo', 'RcHm_v2.0_Chr3g0455541' => 'rch', 'RcHm_v2.0_Chr4g0443941' => 'rch', 'RcHm_v2.0_Chr6g0271021' => 'rch', 'RcHm_v2.0_Chr7g0236781' => 'rch', 'Rhsim07G0211800' => 'rsi', 'Rhsim12G0121000' => 'rsi', 'Sabra02G0083000' => 'sbr', 'Sabra07G0094200' => 'sbr', 'Sabra10G0026500' => 'sbr', 'Sabra17G0029900' => 'sbr', 'Sc01g0001150' => 'sci', 'Sc11g0001210' => 'sci', 'Sed0002698' => 'sed', 'Sed0011755' => 'sed', 'Sed0021630' => 'sed', 'Sed0022127' => 'sed', 'SEGI_02443' => 'sgi', 'SEGI_12549' => 'sgi', 'SEGI_13379' => 'sgi', 'SEGI_20117' => 'sgi', 'SEGI_23287' => 'sgi', 'SEGI_36476' => 'sgi', 'SGA_v2.0_scaffold165G38250' => 'sas', 'SGA_v2.0_scaffold48G17832' => 'sas', 'SGA_v2.0_scaffold83G26374' => 'sas', 'SGA_v2.0_scaffold8G04226' => 'sas', 'SGA_v2.0_scaffold8G04227' => 'sas', 'SHI27221' => 'shi', 'SMO347G0330' => 'smo', 'SMO361G0085' => 'smo', 'SMO367G0188' => 'smo', 'Solyc01g105820.3' => 'sly', 'Solyc04g026200.3' => 'sly', 'Solyc04g026220.4' => 'sly', 'Solyc05g005630.4' => 'sly', 'Solyc11g017040.2' => 'sly', 'Solyc11g017060.2' => 'sly', 'Sopen00g006460' => 'spe', 'Sopen01g048280' => 'spe', 'Sopen04g014190' => 'spe', 'Sopen04g014200' => 'spe', 'Sopen04g014280' => 'spe', 'Sopen05g001630' => 'spe', 'Sopen11g009030' => 'spe', 'Sopen11g009050' => 'spe', 'Sp1g08320' => 'spa', 'Sp1g09220' => 'spa', 'Sp2g04460' => 'spa', 'Sp7g31340' => 'spa', 'SpUn0106_0010' => 'spa', 'TAR374G1183' => 'tar', 'TAR381G0500' => 'tar', 'TAR381G1516' => 'tar', 'TAR625G0946' => 'tar', 'THA.LOC104807180' => 'tha', 'THA.LOC104816798' => 'tha', 'THA.LOC104820191' => 'tha', 'THA.LOC104823662' => 'tha', 'Thecc.02G129400' => 'tca', 'Thecc.02G248100' => 'tca', 'Thecc.08G070600' => 'tca', 'Thhalv10006645m.g' => 'esa', 'Thhalv10007260m.g' => 'esa', 'Thhalv10023376m.g' => 'esa', 'Thhalv10024447m.g' => 'esa', 'TPR.G12734' => 'tpr', 'TPR.G13778' => 'tpr', 'TPR.G32100' => 'tpr', 'TPR.G34572' => 'tpr', 'TPR.G36050' => 'tpr', 'TPR.G39555' => 'tpr', 'TPR.G6330' => 'tpr', 'TPR.G6333' => 'tpr', 'TPR.G9503' => 'tpr', 'TWI12G0821' => 'twi', 'TWI18G1467' => 'twi', 'TWI56G0043' => 'twi', 'TWI59G0076' => 'twi', 'unitig_26.g10341' => 'ugi', 'unitig_744.g24188' => 'ugi', 'unitig_8.g4849' => 'ugi', 'unitig_8.g4850' => 'ugi', 'vmacro04653' => 'vma', 'vmacro04654' => 'vma', 'vmacro16254' => 'vma', 'VMungo0251G2116' => 'vmu', 'VMungo0540G0648' => 'vmu', 'VMungo1309G1057' => 'vmu', 'Zm00001eb031350' => 'zma', 'Zm00001eb153850' => 'zma', 'Zm00001eb208510' => 'zma', 'Zm00001eb367170' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001292' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001292' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001292' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001292' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151