InterPro domain: IPR011141

General Information

  • Identifier IPR011141
  • Description Polyketide synthase, type III
  • Number of genes 1156
  • Gene duplication stats Loading...
  • Associated GO terms GO:0016747   GO:0009058  

Abstract

Type III polyketide synthases include plant naringenin-chalcone synthases (CHSs) [ 1 , 2 ] and stilbene synthases (STSs) (resveratrol synthases) [ 3 , 4 ]. This group also includes CHS-related enzymes such as bibenzyl synthase (BBS) [ 5 ] and acridone synthase (ACS) [ 6 ] that share a common chemical mechanism but differ from CHS in their substrate specificity and/or in the stereochemistry of the polyketide cyclisation reaction. It also includes prokaryotic type III polyketide synthases (PKSs).

Type III polyketide synthases catalyse formation of structurally diverse polyketides. They are homodimeric iterative PKSs and contain two independent active sites each of which catalyses single or multiple condensation reactions to generate polyketides of different lengths [ 7 ]. CHS and STS are plant-specific polyketide synthases. With a starter CoA-ester they perform three sequential condensation steps with acetate units from malonyl-CoA to form a tetraketide intermediate that is folded to the ring systems specific to the different products. Each monomer subunit is capable of performing all three condensation steps, and malonyl-CoA is the direct donor of the acetate units. The structure of the Medicago sativa (Alfalfa) CHS2 has the active site architecture that defines the sequence and chemistry of multiple decarboxylation and condensation reactions [ 8 ].

CHSs ( 2.3.1.74 ) are key enzymes in flavonoid assembly. They synthesize naringenin chalcone, the precursor for a large number of flavonoids. CHS is essential for formation of 4,2',4',6'-tetrahydroxychalcone, a plant secondary metabolite that sits at a critical metabolic branch point leading to the biosynthesis of anthocyanin pigments, anti-microbial phytoalexins, and flavonoid inducers of Rhizobium nodulation genes. STSs ( 2.3.1.95 ) occur in a limited number of unrelated plants and synthesize the backbone of the stilbene phytoalexins that have antifungal properties and contribute to pathogen defence.

This group also contains prokaryotic type III PKSs [ 9 ]. They have been shown to be responsible for the biosynthesis of natural products such as 1,3,6,8-tetrahydroxynaphthalene (THN) (produced by RppA protein) [ 10 ] and for the formation of key components of more complex molecules such as the antimicrobial agent vancomycin (produced by DpgA protein) [ 11 ]. Streptomyces coelicolor THN synthase (THNS) is believed to be involved in the biosynthesis of the prenylated naphthoquinone cytotoxin marinone in a marine sediment-derived actinomycete [ 12 ]. PKS11 from Mycobacterium tuberculosis is involved in the biosynthesis of methyl-branched alkylpyrones and catalyses the extension of medium- and long-chain aliphatic acyl-CoA substrates by using malonyl-CoA and methylmalonyl-CoA as extender molecules to synthesize polyketide products [ 13 ].


1. Plant polyketide synthases: a chalcone synthase-type enzyme which performs a condensation reaction with methylmalonyl-CoA in the biosynthesis of C-methylated chalcones. Biochemistry 37, 8417-25
2. Enzymatic reactions by five chalcone synthase homologs from hop (Humulus lupulus L.). Biosci Biotechnol Biochem 68, 1142-5
3. Stilbene synthase from Scots pine (Pinus sylvestris). FEBS Lett. 313, 71-4
4. Expression of the grapevine stilbene synthase gene VST1 in papaya provides increased resistance against diseases caused by Phytophthora palmivora. Planta 220, 241-50
5. The inducible 9, 10-dihydrophenanthrene pathway: characterization and expression of bibenzyl synthase and S-adenosylhomocysteine hydrolase. Arch. Biochem. Biophys. 317, 201-7
6. Molecular cloning and heterologous expression of acridone synthase from elicited Ruta graveolens L. cell suspension cultures. Plant Mol. Biol. 27, 681-92
7. Structure-guided programming of polyketide chain-length determination in chalcone synthase. Biochemistry 40, 14829-38
8. Structure of chalcone synthase and the molecular basis of plant polyketide biosynthesis. Nat. Struct. Biol. 6, 775-84
9. Discovery of a new bacterial polyketide biosynthetic pathway. Chembiochem 2, 35-8
10. A new pathway for polyketide synthesis in microorganisms. Nature 400, 897-9
11. Glycopeptide antibiotic biosynthesis: enzymatic assembly of the dedicated amino acid monomer (S)-3,5-dihydroxyphenylglycine. Proc. Natl. Acad. Sci. U.S.A. 98, 14901-6
12. Plant-like biosynthetic pathways in bacteria: from benzoic acid to chalcone. J. Nat. Prod. 65, 1956-62
13. Crystal structure of Mycobacterium tuberculosis polyketide synthase 11 (PKS11) reveals intermediates in the synthesis of methyl-branched alkylpyrones. J Biol Chem 288, 16484-94

Species distribution

Gene table

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