Functional clusters
Information
- Type InterPro
- Description Polyketide synthase, type III
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_191 | 3 | 3 | 0.000000810447 |
| Brassica carinata | ChrC03 | 5 | CH_bca_651 | 3 | 3 | 0.000000383844 |
| Brassica oleracea | C2 | 5 | CH_bol_167 | 4 | 7 | 0.00000000500295 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_587 | 3 | 3 | 0.000000520419 |
| Coffea canephora | chr0 | 5 | CH_ccan_131 | 3 | 5 | 0.00000000952246 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_43 | 6 | 11 | 0.0000000000000101286 |
| Hydrangea macrophylla | Hma1.2p1_0691F.1 | 5 | CH_hma_385 | 2 | 2 | 0.000111086 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_64 | 7 | 12 | 3.19637e-16 |
| Physcomitrium patens | Chr19 | 5 | CH_ppa_33 | 4 | 4 | 0.0000000217164 |
| Physcomitrium patens | Chr02 | 5 | CH_ppa_7 | 7 | 16 | 0.000000000000124659 |
| Prunus persica | Pp04 | 5 | CH_ppe_299 | 4 | 11 | 0.000000028738 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_833 | 3 | 7 | 0.00000700561 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_86 | 7 | 8 | 1.5617e-19 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_281 | 3 | 3 | 0.000000500331 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_1890 | 3 | 5 | 0.0000547807 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_73 | 13 | 35 | 1.98754e-31 |
| Solanum tuberosum | ST4.03ch12 | 5 | CH_stu_122 | 6 | 15 | 0.0000000000000367302 |
| Utricularia gibba | unitig_26 | 5 | CH_ugi_76 | 4 | 53 | 0.00000241759 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_191 | 3 | 3 | 0.000000810447 |
| Brassica carinata | ChrC03 | 6 | CH_bca_651 | 3 | 3 | 0.000000383844 |
| Brassica oleracea | C2 | 6 | CH_bol_167 | 4 | 7 | 0.00000000500295 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_587 | 3 | 3 | 0.000000520419 |
| Coffea canephora | chr0 | 6 | CH_ccan_131 | 3 | 5 | 0.00000000952246 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_43 | 6 | 11 | 0.0000000000000101286 |
| Hydrangea macrophylla | Hma1.2p1_0691F.1 | 6 | CH_hma_385 | 2 | 2 | 0.000111086 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_64 | 7 | 12 | 3.19637e-16 |
| Physcomitrium patens | Chr19 | 6 | CH_ppa_33 | 4 | 4 | 0.0000000217164 |
| Physcomitrium patens | Chr02 | 6 | CH_ppa_7 | 7 | 16 | 0.000000000000124659 |
| Prunus persica | Pp04 | 6 | CH_ppe_299 | 4 | 11 | 0.000000028738 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_833 | 3 | 7 | 0.00000700561 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_86 | 7 | 8 | 1.5617e-19 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_281 | 3 | 3 | 0.000000500331 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_1890 | 3 | 5 | 0.0000547807 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_73 | 13 | 35 | 1.98754e-31 |
| Solanum tuberosum | ST4.03ch12 | 6 | CH_stu_122 | 6 | 15 | 0.0000000000000367302 |
| Utricularia gibba | unitig_26 | 6 | CH_ugi_76 | 4 | 53 | 0.00000241759 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |