Gene: vmacro21123
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro21123
- Transcript Identifier vmacro21123-RA
- Gene Type Coding gene
- Location chr10_Vaccinium_macrocarpon_Stevens_v1 : 20021115-20027092 : positive
Gene Family Information
- ID HOM05D000237
- #Genes/#Species 1765/99
- Phylogenetic origin
- ID ORTHO05D006530
- #Genes/#Species 141/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id vmacro21123_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to At1g21570: Zinc finger CCCH domain-containing protein 7 (Arabidopsis thaliana OX=3702)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043484 | ISO | PLAZA Integrative Orthology | regulation of RNA splicing | AT1G21580 |
| GO:0006468 | ISO | PLAZA Homology (enrichment) | protein phosphorylation | HOM05D000237 |
| GO:0060149 | ISO | PLAZA Integrative Orthology | negative regulation of posttranscriptional gene silencing | AT1G21580 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D000237 |
| GO:0004672 | ISO | PLAZA Homology (enrichment) | protein kinase activity | HOM05D000237 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016607 | ISO | PLAZA Integrative Orthology | nuclear speck | AT1G21580 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000571 | Zinc finger, CCCH-type |
| Mapman id | Description |
|---|---|
| 16.4.1.2.4 | RNA processing.RNA surveillance.exosome complex.associated co-factor activities.RNA degradation surveillance factor (SOP1) |