Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.3e-305 1052.4 566 100.0
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 4.7e-183 645.2 504 71.2
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 2.7e-146 523.1 503 60.8
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.4e-133 479.6 511 57.1
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.4e-131 472.2 507 56.4
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 1.8e-121 440.7 506 52.8
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 3.4e-117 426.4 454 56.8
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 5.8e-117 425.6 493 52.3
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 7.6e-117 425.2 497 52.3
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 4.9e-116 422.5 506 51.6
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 2.5e-115 420.2 523 49.1
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 1.8e-113 414.1 494 50.8
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 2.0e-109 400.6 495 49.7
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.0e-108 398.3 493 50.1
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.7e-108 397.5 511 49.3
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.7e-108 397.5 493 49.7
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.2e-108 397.1 495 49.3
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 5.5e-107 392.5 492 49.6
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 9.3e-107 391.7 490 49.4
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.2e-106 391.3 505 48.9
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.1e-106 390.6 507 48.5
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 6.7e-105 385.6 493 49.5
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 3.3e-104 383.3 506 45.5
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 5.7e-104 382.5 492 50.0
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 9.7e-104 381.7 492 49.8
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.2e-103 380.6 495 49.1
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 2.2e-103 380.6 495 48.5
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 1.1e-102 378.3 498 48.4
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.4e-102 377.9 492 50.8
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.7e-100 370.9 498 48.0
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 3.8e-100 369.8 489 47.6
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.5e-100 368.6 498 47.6
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.4e-99 367.9 499 47.7
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.4e-99 367.9 501 46.7
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.9e-99 367.5 492 46.5
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.5e-99 367.1 498 47.6
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 4.2e-99 366.3 494 48.6
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 4.2e-99 366.3 504 45.0
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.4e-97 361.3 499 47.3
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.0e-97 360.1 501 46.3
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 3.0e-97 360.1 509 45.4
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 6.7e-97 359.0 515 45.4
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 8.8e-97 358.6 500 47.0
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 5.7e-96 355.9 505 43.8
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 9.7e-96 355.1 492 45.9
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.7e-95 354.4 502 45.0
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.8e-95 353.6 491 45.2
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 6.3e-95 352.4 506 46.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 8.2e-95 352.1 506 45.8
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 2.4e-94 350.5 506 43.9
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 4.1e-94 349.7 545 42.9
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 6.9e-94 349.0 495 44.4
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 9.1e-94 348.6 495 44.4
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-92 345.1 499 46.3
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.3e-92 344.7 500 43.8
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 1.4e-91 341.3 497 43.9
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 2.5e-91 340.5 496 42.7
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 7.2e-91 339.0 502 44.2
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 7.2e-91 339.0 529 41.6
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 2.1e-90 337.4 496 42.3
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 2.1e-90 337.4 499 42.9
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.7e-90 337.0 520 41.2
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.7e-90 337.0 499 43.1
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 3.6e-90 336.7 491 44.4
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 3.6e-90 336.7 503 43.5
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.8e-89 334.3 450 46.9
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 6.7e-89 332.4 496 42.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 6.7e-89 332.4 496 42.7
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.0e-88 330.9 495 44.4
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 2.6e-88 330.5 488 45.7
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 5.7e-88 329.3 495 43.4
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.8e-87 327.0 458 44.8
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.8e-87 327.0 463 47.1
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 6.3e-87 325.9 451 46.6
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 3.1e-86 323.6 458 46.5
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 6.5e-84 315.8 480 43.8
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.1e-83 315.1 511 41.3
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.6e-82 311.2 497 42.9
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 8.0e-82 308.9 324 59.0
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.2e-80 305.1 495 41.8
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.2e-80 305.1 511 41.9
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 9.1e-78 295.4 497 40.6
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.2e-77 295.0 495 42.0
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 4.5e-77 293.1 496 41.1
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 2.9e-76 290.4 455 42.6
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.2e-74 285.0 492 40.4
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 8.0e-74 282.3 493 40.2
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.7e-68 264.6 314 52.9
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.5e-67 261.5 490 38.6
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.2e-67 260.4 513 37.0
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.1e-66 257.7 495 37.4
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.1e-62 245.4 306 48.0
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 6.6e-60 236.1 515 34.8
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.1e-59 235.3 328 44.5
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.1e-59 235.3 616 32.0
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.5e-59 234.2 505 34.9
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 9.5e-59 232.3 310 48.4
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 4.0e-57 226.9 549 32.8
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.7e-52 211.5 183 66.7
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 7.5e-48 196.1 467 33.4
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 2.9e-47 194.1 499 33.3
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 4.9e-47 193.4 500 32.6
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 4.6e-45 186.8 499 33.9
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.1e-43 182.2 305 41.0
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 1.9e-43 181.4 496 31.7
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 5.6e-43 179.9 462 31.4
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.1e-41 175.6 345 34.5
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.8e-41 174.9 489 32.1
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.0e-40 171.4 284 43.3
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 9.9e-40 169.1 476 30.9
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.7e-39 168.3 178 48.3
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.9e-39 167.5 257 41.6
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 5.4e-38 163.3 454 32.8
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 8.4e-31 139.4 172 54.7
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 4.1e-30 137.1 151 51.0
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 5.1e-28 130.2 397 28.7
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.5e-24 118.6 163 44.2
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 2.0e-24 118.2 283 32.9
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 2.6e-24 117.9 103 69.9
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 5.1e-20 103.6 399 27.8
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 6.6e-20 103.2 196 35.7
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 4.8e-18 97.1 416 26.2
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 9.0e-17 92.8 133 44.4
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 2.0e-16 91.7 174 35.1
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 2.0e-16 91.7 172 34.9
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.7e-15 88.6 96 53.1
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 6.4e-15 86.7 142 40.8
Cfa024412 Carpinus fangiana HOM05D000237 ORTHO05D006530 1.3e-12 79.0 101 37.6
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 3.0e-12 77.8 189 33.3
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 7.6e-08 63.2 229 27.9
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 3.2e-06 57.8 111 36.0
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.5e-06 57.0 151 27.8


User provided reference genes

Program Settings