Gene: vmacro16300
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro16300
- Transcript Identifier vmacro16300-RA
- Gene Type Coding gene
- Location chr4_Vaccinium_macrocarpon_Stevens_v1 : 11193226-11195007 : negative
Gene Family Information
- ID HOM05D001007
- #Genes/#Species 602/100
- Phylogenetic origin
- ID ORTHO05D008005
- #Genes/#Species 124/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id vmacro16300_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to ISE2: DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (Arabidopsis thaliana OX=3702)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006401 | ISO | PLAZA Homology (enrichment) | RNA catabolic process | HOM05D001007 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | ISO | PLAZA Homology (enrichment) | nucleic acid binding | HOM05D001007 |
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D001007 |
| GO:0003723 | ISO | PLAZA Homology (enrichment) | RNA binding | HOM05D001007 |
| GO:0003724 | ISO | PLAZA Homology (enrichment) | RNA helicase activity | HOM05D001007 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012961 | ATP-dependent RNA helicase Ski2, C-terminal |
| Mapman id | Description |
|---|---|
| 16.11.4.1.1.3 | RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.RNA helicase (ISE2) |