Gene: vmacro15780

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro15780
  • Transcript Identifier vmacro15780-RA
  • Gene Type Coding gene
  • Location chr4_Vaccinium_macrocarpon_Stevens_v1 : 26564021-26567335 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro15780_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to Os03g0708600: DEAD-box ATP-dependent RNA helicase 21 (Oryza sativa subsp. japonica OX=39947)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc02g068190.1
GO:2000636
ISO
PLAZA Integrative Orthologypositive regulation of primary miRNA processing AT2G33730
GO:1903800
ISO
PLAZA Integrative Orthologypositive regulation of production of miRNAs involved in gene silencing by miRNA AT2G33730
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT2G33730

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0005515
IEA
InterProprotein binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc02g068190.1
GO:0140223
ISO
PLAZA Integrative Orthologygeneral transcription initiation factor activity AT2G33730

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G33730
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G33730

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR002885 Pentatricopeptide repeat
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR001650 Helicase, C-terminal
Mapman id Description
35.1 not assigned.annotated