Gene: Solyc02g068190.1

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g068190.1
  • Transcript Identifier Solyc02g068190.1.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 36224088-36226076 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g068190.1.1
  • uniprot A0A3Q7F0N6
  • gene_id Solyc02g068190

Descriptions

  • Description RNA helicase DEAD6
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1903800
ISO
PLAZA Integrative Orthologypositive regulation of production of miRNAs involved in gene silencing by miRNA AT2G33730
GO:2000636
ISO
PLAZA Integrative Orthologypositive regulation of primary miRNA processing AT2G33730
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0016070
IDA
Gene OntologyRNA metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0140223
ISO
PLAZA Integrative Orthologygeneral transcription initiation factor activity AT2G33730
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G33730
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IDA
Gene OntologyRNA helicase activity1
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G33730
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G33730
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.2.7.1.3 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp28)