Gene: vmacro10336

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro10336
  • Transcript Identifier vmacro10336-RA
  • Gene Type Coding gene
  • Location chr8_Vaccinium_macrocarpon_Stevens_v1 : 7362840-7389837 : positive

Gene Family Information

  • ID HOM05D000279
  • #Genes/#Species 1569/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro10336_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to UBP12: Ubiquitin carboxyl-terminal hydrolase 12 (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IEA
InterProprotein deubiquitination
GO:2000280
ISO
PLAZA Integrative Orthologyregulation of root development AT5G06600
GO:0031647
ISO
PLAZA Integrative Orthologyregulation of protein stability AT5G06600
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT5G06600
GO:0010078
ISO
PLAZA Integrative Orthologymaintenance of root meristem identity AT5G06600
GO:0070646
ISO
PLAZA Integrative Orthologyprotein modification by small protein removal AT5G06600

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0004843
IEA
InterProthiol-dependent deubiquitinase

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G06600
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G11910
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G06600
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G06600

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008974 TRAF-like
IPR002083 MATH/TRAF domain
IPR038765 Papain-like cysteine peptidase superfamily
IPR024729 Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
Mapman id Description
14.6.2.3 DNA damage response.nucleotide excision repair (NER).transcription-coupled nucleotide excision repair (TC-NER).deubiquitinase (UBP12-13)