Gene: AT3G11910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G11910
  • Transcript Identifier AT3G11910.2
  • Gene Type Coding gene
  • Location Chr3 : 3761758-3770290 : negative

Gene Family Information

  • ID HOM05D000279
  • #Genes/#Species 1569/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G11910.2
  • symbol UBP13
  • Alias AtUBP13
  • uniprot Q84WU2

Descriptions

  • Description ubiquitin-specific protease 13
  • Computational description ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).
  • Computational description ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.2).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000280
IMP
GOA Databaseregulation of root development
GO:0006508
IEA
GOA Databaseproteolysis
GO:0070646
IMP
GOA Databaseprotein modification by small protein removal
GO:0010078
IMP
GOA Databasemaintenance of root meristem identity
GO:0031647
IMP
GOA Databaseregulation of protein stability
GO:0031647
IBA
Gene Ontologyregulation of protein stability1
GO:0016579
IMP
GOA Databaseprotein deubiquitination
GO:0016579
IDA
IBA
IEA
Gene Ontologyprotein deubiquitination1 2
GO:0016579
IEA
InterProprotein deubiquitination
GO:0009867
IMP
Gene Ontologyjasmonic acid mediated signaling pathway3
GO:0006511
IEA
Gene Ontologyubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008234
IEA
GOA Databasecysteine-type peptidase activity
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0004843
IMP
GOA Databasethiol-dependent deubiquitinase
GO:0004843
IDA
IBA
IEA
Gene Ontologythiol-dependent deubiquitinase1 3
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0005515
IEA
InterProprotein binding
GO:0004197
IBA
Gene Ontologycysteine-type endopeptidase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
IBA
Gene Ontologycytosol1 5
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma6
GO:0005634
IPI
ISM, IBA
Gene Ontologynucleus1 3
GO:0005737
IPI
Gene Ontologycytoplasm3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR024729 Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
IPR002083 MATH/TRAF domain
IPR029346 Ubiquitin carboxyl-terminal hydrolase, C-terminal
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR008974 TRAF-like
IPR038765 Papain-like cysteine peptidase superfamily
Mapman id Description
14.6.2.3 DNA damage response.nucleotide excision repair (NER).transcription-coupled nucleotide excision repair (TC-NER).deubiquitinase (UBP12-13)
19.2.3.1.1.5 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.ubiquitin deconjugation.UBP deubiquitinase activities.deubiquitinase (UBP12-13)