Gene: vmacro02372

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro02372
  • Transcript Identifier vmacro02372-RA
  • Gene Type Coding gene
  • Location chr9_Vaccinium_macrocarpon_Stevens_v1 : 622598-628026 : negative

Gene Family Information

  • ID HOM05D006460
  • #Genes/#Species 123/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro02372_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to TRM13: tRNA:m(4)X modification enzyme TRM13 (Oryza sativa subsp. japonica OX=39947)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008033
IEA
InterProtRNA processing
GO:0030488
IEA
InterProtRNA methylation
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress Os03g0833200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008168
IEA
InterPromethyltransferase activity
GO:0106050
IEA
InterProtRNA 2'-O-methyltransferase activity
GO:0008175
ISO
PLAZA Integrative OrthologytRNA methyltransferase activity Os03g0833200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus Os03g0833200
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Os03g0833200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022776 TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR021721 Zinc finger, CCCH-type, TRM13
IPR007871 Methyltransferase TRM13
IPR039044 tRNA:m(4)X modification enzyme Trm13
Mapman id Description
16.5.7.12 RNA processing.RNA modification.tRNA methylation.tRNA adenosine-methyltransferase (TRM13)