Gene: vmacro01626

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro01626
  • Transcript Identifier vmacro01626-RA
  • Gene Type Coding gene
  • Location chr1_Vaccinium_macrocarpon_Stevens_v1 : 9617636-9625231 : negative

Gene Family Information

  • ID HOM05D000544
  • #Genes/#Species 1005/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro01626_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to AL6: PHD finger protein ALFIN-LIKE 6 (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0055065
ISO
PLAZA Integrative Orthologymetal ion homeostasis AT2G02470
GO:0048767
ISO
PLAZA Integrative Orthologyroot hair elongation AT2G02470
GO:0016036
ISO
PLAZA Integrative Orthologycellular response to phosphate starvation AT2G02470

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042393
IEA
InterProhistone binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G02470
GO:0035064
ISO
PLAZA Integrative Orthologymethylated histone binding AT1G14510
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G14510

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G14510
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G02470

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021998 Alfin, N-terminal
IPR044104 Alfin1-like, PHD finger
IPR011011 Zinc finger, FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
IPR019787 Zinc finger, PHD-finger
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR045104 Alfin
Mapman id Description
12.3.6.2.2 Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.associated factors.methylation reader (Alfin)