Gene: AT2G02470

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G02470
  • Transcript Identifier AT2G02470.2
  • Gene Type Coding gene
  • Location Chr2 : 652837-654621 : positive

Gene Family Information

  • ID HOM05D000544
  • #Genes/#Species 1005/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G02470.2
  • symbol AL6
  • uniprot Q8S8M9

Descriptions

  • Description alfin-like 6
  • Computational description alfin-like 6 (AL6); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 7 (TAIR:AT1G14510.1); Has 1820 Blast hits to 1777 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 798; Fungi - 350; Plants - 563; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
  • Computational description alfin-like 6 (AL6); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 7 (TAIR:AT1G14510.1).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006325
IEA
GOA Databasechromatin organization
GO:0055065
IMP
Gene Ontologymetal ion homeostasis1
GO:0048767
IMP
Gene Ontologyroot hair elongation1
GO:0016036
IMP
Gene Ontologycellular response to phosphate starvation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0042393
IEA
Gene Ontologyhistone binding
GO:0042393
IEA
InterProhistone binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003712
IBA
Gene Ontologytranscription coregulator activity3
GO:0000976
IPI
IBA
Gene Ontologytranscription cis-regulatory region binding3 4
GO:0035064
ISS
Gene Ontologymethylated histone binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus3 5
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021998 Alfin, N-terminal
IPR011011 Zinc finger, FYVE/PHD-type
IPR044104 Alfin1-like, PHD finger
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
IPR019787 Zinc finger, PHD-finger
IPR045104 Alfin
Mapman id Description
12.3.6.2.2 Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.associated factors.methylation reader (Alfin)