Gene: Zm00001eb237040
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb237040
- Transcript Identifier Zm00001eb237040_T001
- Gene Type Coding gene
- Location 5 : 133456378-133461279 : positive
Gene Family Information
- ID HOM05D001696
- #Genes/#Species 382/99
- Phylogenetic origin
- ID ORTHO05D001746
- #Genes/#Species 360/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Zm00001eb237040_T001
- pid Zm00001eb237040_P001
- uniprot A0A1D6H4Q1
- uniprot A0A1D6H4Q2
- uniprot A0A3L6EQ28
- uniprot B7ZYG5
- uniprot A0A1D6H4Q4
- uniprot C0PDG9
- uniprot A0A1D6H4Q6
- entrez 100279503
- refseq NP_001145976.1
- refseq NM_001152504.1
- V4_identifier Zm00001d015955
Descriptions
- Description Zm00001e014153
- Description Topoisomerase II-associated protein PAT1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000290 | IBA IEA | GOA Database | deadenylation-dependent decapping of nuclear-transcribed mRNA | |
| GO:0000290 | IEA | InterPro | deadenylation-dependent decapping of nuclear-transcribed mRNA | |
| GO:0033962 | IBA | GOA Database | P-body assembly | |
| GO:0019827 | ISO | PLAZA Integrative Orthology | stem cell population maintenance | AT3G22270 |
| GO:0045087 | ISO | PLAZA Integrative Orthology | innate immune response | AT1G79090 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016853 | IEA | GOA Database | isomerase activity | |
| GO:0003723 | IBA | GOA Database | RNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G22270 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G79090 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000932 | IBA | GOA Database | P-body | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G22270 |
| GO:0005783 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum | AT3G22270 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR039900 | Pat1-like |
| Mapman id | Description |
|---|---|
| 16.4.2.5 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decay factor (PAT1) |