Gene: Thecc.01G302300

General Information

Structural Information

  • Species Theobroma cacao
  • Gene Identifier Thecc.01G302300
  • Transcript Identifier Thecc.01G302300.1
  • Gene Type Coding gene
  • Location Chromosome_1 : 33633951-33635967 : negative

Gene Family Information

  • ID HOM05D001072
  • #Genes/#Species 571/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Thecc.01G302300.v2.1
  • pacid 42018363
  • ancestorIdentifier Thecc1EG004680.CGDv1.1
  • ancestorIdentifier Thecc1EG004680t1.CGDv1.1

Descriptions

  • Description Ribosomal protein S4 (RPS4A) family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G07090
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G07090

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
InterProribosome
GO:0022626
ISO
PLAZA Integrative Orthologycytosolic ribosome AT5G07090
GO:0022627
ISO
PLAZA Integrative Orthologycytosolic small ribosomal subunit AT2G17360
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G17360
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT5G07090
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G58420
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT2G17360

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000876 Ribosomal protein S4e
IPR041982 Ribosomal protein S4, KOW domain
IPR032277 40S ribosomal protein S4, C-terminal domain
IPR002942 RNA-binding S4 domain
IPR013845 Ribosomal protein S4e, central region
IPR014722 Ribosomal protein L2, domain 2
IPR005824 KOW
IPR038237 Ribosomal protein S4e, central domain superfamily
IPR036986 RNA-binding S4 domain superfamily
IPR013843 Ribosomal protein S4e, N-terminal
Mapman id Description
17.1.3.1.5 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS4